Query psy12789
Match_columns 514
No_of_seqs 441 out of 2431
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:40:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1225|consensus 99.9 1.9E-21 4E-26 208.9 15.1 303 27-416 52-365 (525)
2 KOG1225|consensus 99.6 1.1E-14 2.4E-19 157.0 11.9 110 304-420 234-343 (525)
3 KOG3512|consensus 99.6 1.9E-14 4.2E-19 149.5 12.2 248 10-319 28-310 (592)
4 KOG1226|consensus 99.5 1.4E-13 3E-18 150.9 15.6 177 240-420 409-622 (783)
5 KOG1219|consensus 99.5 6.6E-14 1.4E-18 163.2 13.0 95 325-419 3871-3978(4289)
6 KOG4289|consensus 99.2 1.4E-11 3.1E-16 140.1 8.4 78 305-382 1223-1315(2531)
7 KOG1219|consensus 99.2 4E-11 8.6E-16 140.8 8.3 110 348-471 3860-3978(4289)
8 KOG1226|consensus 99.0 3.8E-10 8.2E-15 124.3 8.2 121 293-419 514-652 (783)
9 KOG4289|consensus 99.0 1E-09 2.2E-14 125.5 8.6 98 353-463 1180-1308(2531)
10 KOG1214|consensus 98.8 2.7E-08 5.9E-13 109.7 11.3 124 293-416 700-860 (1289)
11 KOG4260|consensus 98.3 4.7E-07 1E-11 89.5 4.2 113 293-412 150-303 (350)
12 KOG4260|consensus 98.2 1.3E-06 2.9E-11 86.4 5.0 103 308-414 132-269 (350)
13 KOG1217|consensus 98.2 1.1E-05 2.3E-10 85.8 12.5 155 294-463 178-385 (487)
14 KOG1214|consensus 98.2 7.3E-06 1.6E-10 91.1 9.7 119 334-467 715-859 (1289)
15 KOG1217|consensus 98.2 1.5E-05 3.4E-10 84.6 12.1 153 303-468 109-305 (487)
16 KOG0994|consensus 97.7 0.00016 3.4E-09 83.1 9.8 132 291-422 767-952 (1758)
17 KOG0994|consensus 97.4 0.00013 2.8E-09 83.7 3.9 112 305-418 999-1146(1758)
18 PF00008 EGF: EGF-like domain 97.3 0.00016 3.5E-09 49.5 2.3 28 388-415 3-31 (32)
19 smart00179 EGF_CA Calcium-bind 97.1 0.00058 1.3E-08 47.7 3.9 35 384-418 2-39 (39)
20 PF07974 EGF_2: EGF-like domai 97.1 0.00053 1.2E-08 47.0 3.2 25 293-317 6-32 (32)
21 KOG4659|consensus 97.0 0.00011 2.3E-09 85.3 -1.2 53 12-65 3-55 (1899)
22 PF07645 EGF_CA: Calcium-bindi 97.0 0.00061 1.3E-08 49.4 2.7 30 384-413 2-34 (42)
23 cd00054 EGF_CA Calcium-binding 96.7 0.002 4.4E-08 44.2 3.9 34 385-418 3-38 (38)
24 PF07974 EGF_2: EGF-like domai 96.6 0.0027 5.8E-08 43.6 3.3 26 390-417 7-32 (32)
25 KOG1836|consensus 96.3 0.0091 2E-07 73.5 8.0 36 387-422 777-816 (1705)
26 cd00053 EGF Epidermal growth f 96.1 0.0075 1.6E-07 40.6 3.5 29 389-417 6-35 (36)
27 smart00181 EGF Epidermal growt 95.7 0.012 2.6E-07 40.2 3.3 28 389-417 6-34 (35)
28 PF12947 EGF_3: EGF domain; I 95.0 0.017 3.6E-07 40.7 2.1 28 389-416 6-33 (36)
29 KOG1836|consensus 94.7 0.2 4.4E-06 62.1 11.6 51 333-383 743-812 (1705)
30 PF12661 hEGF: Human growth fa 94.7 0.017 3.6E-07 31.7 1.1 13 405-417 1-13 (13)
31 PF00008 EGF: EGF-like domain 94.5 0.016 3.5E-07 39.5 1.0 26 355-380 1-31 (32)
32 smart00179 EGF_CA Calcium-bind 94.3 0.056 1.2E-06 37.4 3.4 32 352-383 2-39 (39)
33 smart00051 DSL delta serrate l 94.1 0.052 1.1E-06 43.1 3.2 42 372-417 20-63 (63)
34 PF12661 hEGF: Human growth fa 94.0 0.028 6E-07 30.8 1.0 13 305-317 1-13 (13)
35 smart00136 LamNT Laminin N-ter 93.9 0.044 9.5E-07 54.8 3.1 72 111-211 72-143 (238)
36 KOG1218|consensus 93.6 0.65 1.4E-05 47.3 11.1 45 368-414 161-209 (316)
37 PF06247 Plasmod_Pvs28: Plasmo 93.5 0.022 4.8E-07 54.3 0.1 116 298-416 10-163 (197)
38 KOG1218|consensus 92.8 0.48 1E-05 48.2 8.8 80 300-379 118-209 (316)
39 cd00054 EGF_CA Calcium-binding 92.7 0.14 3.1E-06 34.7 3.3 31 352-382 2-37 (38)
40 smart00051 DSL delta serrate l 91.5 0.23 5.1E-06 39.4 3.6 22 361-382 41-63 (63)
41 cd00053 EGF Epidermal growth f 88.8 0.53 1.1E-05 31.2 3.2 26 357-382 5-35 (36)
42 cd00055 EGF_Lam Laminin-type e 88.8 0.47 1E-05 35.6 3.1 16 303-318 18-33 (50)
43 PF12662 cEGF: Complement Clr- 87.9 0.43 9.4E-06 30.6 2.0 10 335-344 2-11 (24)
44 smart00180 EGF_Lam Laminin-typ 85.7 1.2 2.6E-05 32.9 3.7 19 300-318 12-32 (46)
45 PF00053 Laminin_EGF: Laminin 85.5 0.42 9.1E-06 35.5 1.2 20 300-319 12-33 (49)
46 PF07645 EGF_CA: Calcium-bindi 85.4 0.43 9.3E-06 34.4 1.2 28 351-378 1-34 (42)
47 smart00181 EGF Epidermal growt 83.6 1.4 3E-05 29.7 3.1 24 358-382 6-34 (35)
48 PHA02887 EGF-like protein; Pro 81.2 1.4 3E-05 39.1 2.9 26 394-419 96-123 (126)
49 PF14670 FXa_inhibition: Coagu 81.1 1.1 2.3E-05 31.6 1.8 20 395-414 10-29 (36)
50 KOG3512|consensus 80.2 3.1 6.6E-05 45.1 5.5 53 364-420 407-480 (592)
51 PHA02887 EGF-like protein; Pro 78.7 1.7 3.6E-05 38.7 2.5 31 288-319 83-123 (126)
52 PF12947 EGF_3: EGF domain; I 77.0 1.3 2.9E-05 31.1 1.2 23 293-315 6-32 (36)
53 KOG3607|consensus 76.8 2 4.4E-05 49.5 3.3 34 385-421 626-659 (716)
54 PF12955 DUF3844: Domain of un 76.2 2 4.4E-05 37.4 2.4 32 389-420 13-62 (103)
55 cd00055 EGF_Lam Laminin-type e 75.4 2.6 5.6E-05 31.5 2.5 22 396-419 13-34 (50)
56 PF00053 Laminin_EGF: Laminin 75.3 1.9 4.2E-05 31.9 1.8 23 395-419 11-33 (49)
57 PF00055 Laminin_N: Laminin N- 73.9 0.53 1.1E-05 47.1 -2.1 28 112-139 69-96 (237)
58 KOG3514|consensus 73.1 1.6 3.4E-05 51.3 1.2 30 290-319 625-660 (1591)
59 PHA03099 epidermal growth fact 72.4 2.8 6.1E-05 37.8 2.3 30 390-420 52-83 (139)
60 PF04863 EGF_alliinase: Alliin 70.3 2.5 5.5E-05 32.5 1.4 32 390-421 18-53 (56)
61 PF01414 DSL: Delta serrate li 69.4 1.5 3.3E-05 34.7 0.0 44 370-417 18-63 (63)
62 KOG3516|consensus 68.8 3.7 8E-05 49.0 2.9 43 385-427 546-591 (1306)
63 PF01683 EB: EB module; Inter 67.9 13 0.00029 27.7 4.9 19 360-378 28-46 (52)
64 KOG3607|consensus 66.6 3.8 8.2E-05 47.3 2.4 51 295-350 606-657 (716)
65 cd01475 vWA_Matrilin VWA_Matri 63.8 6.5 0.00014 38.4 3.2 20 395-414 199-218 (224)
66 PHA03099 epidermal growth fact 63.2 5.5 0.00012 36.0 2.3 16 304-319 67-82 (139)
67 PF01414 DSL: Delta serrate li 61.9 2.4 5.3E-05 33.6 -0.2 13 370-382 51-63 (63)
68 PF12955 DUF3844: Domain of un 61.3 5.7 0.00012 34.7 2.0 20 293-312 13-41 (103)
69 PF06247 Plasmod_Pvs28: Plasmo 60.6 1.5 3.3E-05 42.1 -1.8 116 333-465 18-160 (197)
70 KOG3514|consensus 56.3 6.6 0.00014 46.5 2.0 36 386-421 625-662 (1591)
71 smart00180 EGF_Lam Laminin-typ 54.2 13 0.00028 27.3 2.6 22 396-419 12-33 (46)
72 PF01683 EB: EB module; Inter 48.3 14 0.00029 27.6 2.0 21 293-313 26-46 (52)
73 PF09064 Tme5_EGF_like: Thromb 48.0 15 0.00032 25.6 1.9 26 382-414 3-28 (34)
74 PF00954 S_locus_glycop: S-loc 47.9 89 0.0019 26.9 7.4 22 293-314 84-108 (110)
75 PF00954 S_locus_glycop: S-loc 46.8 19 0.00041 31.2 3.0 26 353-378 78-107 (110)
76 KOG3516|consensus 46.8 15 0.00033 44.1 2.9 33 389-421 961-994 (1306)
77 PF04863 EGF_alliinase: Alliin 42.5 8.4 0.00018 29.7 0.0 26 294-319 18-51 (56)
78 KOG0196|consensus 39.1 45 0.00097 39.1 5.0 19 295-313 248-268 (996)
79 PF12946 EGF_MSP1_1: MSP1 EGF 37.7 21 0.00046 25.4 1.4 26 389-414 5-31 (37)
80 KOG4680|consensus 28.6 63 0.0014 29.8 3.3 47 93-139 96-150 (153)
81 PF04386 SspB: Stringent starv 22.1 1.2E+02 0.0027 28.2 4.2 43 104-146 56-104 (155)
82 PF05629 Nanovirus_C8: Nanovir 20.6 48 0.001 30.0 1.0 30 7-36 26-60 (153)
83 KOG1388|consensus 20.4 95 0.0021 30.7 3.0 68 295-384 54-127 (217)
No 1
>KOG1225|consensus
Probab=99.86 E-value=1.9e-21 Score=208.95 Aligned_cols=303 Identities=24% Similarity=0.341 Sum_probs=216.5
Q ss_pred CCccchhhheeeeeEEeeCccchhhhhhhhhhhhhhhccccccCcCCCCCcccccCCCCCC------CCCCCCceeeecc
Q psy12789 27 PPSVTASFYQRVKFLVEENSVQSYAHMDEYSERYFNSISNVTAGVSSSGPIGVTDFSQVPD------SFEEAPSVVELKD 100 (514)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 100 (514)
++-+++.|-+++-++.--|.. +=.|+-+...+-.++.|...+.....+..-...-.-... ....|.=.....+
T Consensus 52 ~a~~~~~~~~~~~~~~~~ni~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~c~~~~~~ 130 (525)
T KOG1225|consen 52 AAGFGSDFGTPTGLNHLYNIG-VPNPQLCALGSARAALSRLVALGLCLGGGICSLGKCELFFGDTGSDCPVRKCENDSST 130 (525)
T ss_pred ccccchhccCeeeeeeeeccC-CCcchhhccccchhhhhhcccccccccccccccceeeeeeccchhcCCcccCCcCchh
Confidence 566788888888877766655 556777777666677766655554444222211111111 0112211111112
Q ss_pred ccc-----eeeeeeCCcceecceeccccceeeEEeeecCCCCceeEeeccCCCCCcccceeEEEeeCccccccccccCCC
Q psy12789 101 FNS-----LISATIPSFQFWNSDFNIEQSAFFRFNFDLPRGSNFAVYGRRNVAPSITNYDFSEFIKDNTRTSAFFRFNFD 175 (514)
Q Consensus 101 ~~~-----~~~~~ipp~~fW~~~~~~~~p~~~~fn~tl~~~a~~~vygrr~~~ps~tqydf~Ell~G~~~~~~~~~~~~~ 175 (514)
+++ .-...|++...|.+++++.-.+++.+=-+.+.+|.+|+|++++.-+.|.+|-|-+.|++.. .+.+.-.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~~~~~~~~~~hg~~~~~~~l~~~~-~s~~~~~--- 206 (525)
T KOG1225|consen 131 QGVCDELLFRIDCIESLLSEDCLVRILCKNGVCSLKPNPFGAECGQYKCPNDGSGHGRYYFGNCLSGIS-ASGETCN--- 206 (525)
T ss_pred hhhhhhhhcccchhhhhhhhhhcchhhhhcccccccCCccccccceecCCcCCCCCccceecccccccC-cchhhhh---
Confidence 211 2344788889999999999999999999999999999999999999999999999999985 1110000
Q ss_pred CCCCCcceecCccccCCCcCccceeeeeeCCcccCccccccccCCCcceeeeeccCccccceeeccCCCeeeEEEEEEEE
Q psy12789 176 LPRGSNFAVYGRRNVAPSITNYDFSEFIKGGKINQKRSVDSILGHDDGVSFTSHISNQHHTLSKRSDQTTETNFVEVQIL 255 (514)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~ 255 (514)
|. + ........
T Consensus 207 -------------~~---------------~-----------------------------------------~~~~~~~~ 217 (525)
T KOG1225|consen 207 -------------QL---------------G-----------------------------------------CNDDCFRT 217 (525)
T ss_pred -------------cc---------------c-----------------------------------------CCccceec
Confidence 00 0 00001112
Q ss_pred EeecCCeEEEeEecCCcceeEEEEEEeccccccCCCCCCCCCCcEEeCCeEecCCCCcCCCCCCCCCCCCCCCCCeecCc
Q psy12789 256 KFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGG 335 (514)
Q Consensus 256 ~~l~~G~~~l~~~nd~~~~~~v~~~~~~~~~~~~~Cp~~C~~~G~C~~g~C~C~~Gf~G~~Ce~~~C~~~C~~~G~c~~~ 335 (514)
.+...++|+...+.++.. ...........+....|++.|.++|.|+.|+|+|++||+|.+|++..|+..|+.++.+..+
T Consensus 218 ~r~~~~~~~~~~~~~~~i-c~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g 296 (525)
T KOG1225|consen 218 GRCREGRCFCTAGFFDGI-CECPEGYFGPLCSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDELVCPVDCSGGGVCVDG 296 (525)
T ss_pred cccccCcccccccccCce-eecCCceeCCccccccCCCCCcccceEeCCeEeCCCCCcCCCCCcccCCcccCCCceecCC
Confidence 355566776555554441 1111112223345678999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCCCCCCceeeCCceecCCCCCccccCCCCCCCCCCCCCeeeccCCceeeecCCCcccC
Q psy12789 336 ICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGV 415 (514)
Q Consensus 336 ~C~C~~G~~G~~Ce~~i~eC~~~~C~~~G~C~~~~C~C~~Gy~G~~C~~~~C~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~ 415 (514)
.|.|++||+|..|+.. .| +.+|.++|.|++++|.|.+||+|..|... .|.++|.|++ .|.|..||.|.
T Consensus 297 ~CiC~~g~~G~dCs~~--~c-padC~g~G~Ci~G~C~C~~Gy~G~~C~~~----~C~~~g~cv~-----gC~C~~Gw~G~ 364 (525)
T KOG1225|consen 297 ECICNPGYSGKDCSIR--RC-PADCSGHGKCIDGECLCDEGYTGELCIQR----ACSGGGQCVN-----GCKCKKGWRGP 364 (525)
T ss_pred EeecCCCccccccccc--cC-CccCCCCCcccCCceEeCCCCcCCccccc----ccCCCceecc-----CceeccCccCC
Confidence 9999999999999743 46 57899999999999999999999999876 3999999985 29999999998
Q ss_pred C
Q psy12789 416 D 416 (514)
Q Consensus 416 ~ 416 (514)
+
T Consensus 365 d 365 (525)
T KOG1225|consen 365 D 365 (525)
T ss_pred C
Confidence 8
No 2
>KOG1225|consensus
Probab=99.57 E-value=1.1e-14 Score=157.02 Aligned_cols=110 Identities=40% Similarity=1.042 Sum_probs=101.4
Q ss_pred CeEecCCCCcCCCCCCCCCCCCCCCCCeecCceeecCCCCCCCCCCCCCCCCCCCCCCCCceeeCCceecCCCCCccccC
Q psy12789 304 GKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383 (514)
Q Consensus 304 g~C~C~~Gf~G~~Ce~~~C~~~C~~~G~c~~~~C~C~~G~~G~~Ce~~i~eC~~~~C~~~G~C~~~~C~C~~Gy~G~~C~ 383 (514)
+.|.|..+|+|..|+...|+..|.++|.|..+.|.|++||.|..|+. -.|... |++++.|+++.|.|++||+|..|+
T Consensus 234 ~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~g~CiC~~g~~G~dCs 310 (525)
T KOG1225|consen 234 GICECPEGYFGPLCSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDE--LVCPVD-CSGGGVCVDGECICNPGYSGKDCS 310 (525)
T ss_pred ceeecCCceeCCccccccCCCCCcccceEeCCeEeCCCCCcCCCCCc--ccCCcc-cCCCceecCCEeecCCCccccccc
Confidence 48999999999999988999999999999999999999999999974 357544 999999999999999999999999
Q ss_pred CCCCCCCCCCCCeeeccCCceeeecCCCcccCCCCcc
Q psy12789 384 EAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIK 420 (514)
Q Consensus 384 ~~~C~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~Ce~~ 420 (514)
+..|+..|.++|.|+ .| +|.|.+||+|..|+..
T Consensus 311 ~~~cpadC~g~G~Ci--~G--~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 311 IRRCPADCSGHGKCI--DG--ECLCDEGYTGELCIQR 343 (525)
T ss_pred cccCCccCCCCCccc--CC--ceEeCCCCcCCccccc
Confidence 999999999999999 33 8999999999999875
No 3
>KOG3512|consensus
Probab=99.56 E-value=1.9e-14 Score=149.53 Aligned_cols=248 Identities=19% Similarity=0.198 Sum_probs=143.3
Q ss_pred eEEeccCCceeee----eccCCCccchhhheeeeeEEee--CccchhhhhhhhhhhhhhhccccccCcCCCCCcccccCC
Q psy12789 10 IMCLASNDPVEVL----LRKQPPSVTASFYQRVKFLVEE--NSVQSYAHMDEYSERYFNSISNVTAGVSSSGPIGVTDFS 83 (514)
Q Consensus 10 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (514)
.||.+.+||-+-- .+=||-.|.|.||..|.--.-= ---.-++|.++|.+++ .-++|.
T Consensus 28 ~~~~s~~dpc~~e~g~p~~C~P~~vnaa~g~~V~as~TCGdrPe~~c~~~~~~~~~~---------eCdAs~-------- 90 (592)
T KOG3512|consen 28 DGCKSQVDPCEDETGEPRACQPEFVNAAFGKKVPASSTCGDRPETFCSVENPYLCSN---------ECDASN-------- 90 (592)
T ss_pred ccccCCCCCccCCCCCeeecChhhhhhhhCCccCCccccCCCccceeeecCCCcccc---------cccCCC--------
Confidence 4788888886543 5679999999999887210000 0112345555554433 001111
Q ss_pred CCCCCCCCCCceeeeccccceeeeeeCCcceecceeccccceeeEEeeecCCCCceeEeeccCCCCCcccceeEEEeeCc
Q psy12789 84 QVPDSFEEAPSVVELKDFNSLISATIPSFQFWNSDFNIEQSAFFRFNFDLPRGSNFAVYGRRNVAPSITNYDFSEFIKDN 163 (514)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~ipp~~fW~~~~~~~~p~~~~fn~tl~~~a~~~vygrr~~~ps~tqydf~Ell~G~ 163 (514)
++..-+..=|.++|..+ +.+||+|+.|..+|.++.+|||||||+.| ||+ .
T Consensus 91 -----p~~AHpPalltD~n~~~-----n~TcWqS~tw~~~~~PlnVtlTLSlgKkf------------------ELT--~ 140 (592)
T KOG3512|consen 91 -----PDLAHPPALLTDLNGPG-----NATCWQSETWSRYPSPLNVTLTLSLGKKF------------------ELT--Y 140 (592)
T ss_pred -----ccccCChHHhcCCCCCC-----CcceeeccccCCCCCCceEEEEEecCcEE------------------EEE--E
Confidence 11111122245566544 56899999999999999999999999999 888 4
Q ss_pred cccccccccCCCCCCCCcceecCccccCCCcCccceeeeeeCCcccCccccccccCC------------------Cccee
Q psy12789 164 TRTSAFFRFNFDLPRGSNFAVYGRRNVAPSITNYDFSEFIKGGKINQKRSVDSILGH------------------DDGVS 225 (514)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~------------------~~~~~ 225 (514)
. +.+|.......+-+.....|||+|+ +|||++-.....+|+++....+..+ ...++
T Consensus 141 V-sl~FcS~rPdsmaL~KS~D~GrTWq-----PfQFYss~C~~~fgr~~~~a~isk~n~~Ea~Ct~s~~~~~~~~~~~~a 214 (592)
T KOG3512|consen 141 V-SLTFCSGRPDSMALEKSLDYGRTWQ-----PFQFYSSDCRKAFGRSPRRADISKSNEQEALCTESYSDGAGSGGGKIA 214 (592)
T ss_pred E-EEEEecCCCceeeeeeccccCCccc-----ccchhHHHHHHHhCCCCcccccccCCccceeeccccccCCCCCCceEE
Confidence 4 5555555555555555666999998 8998876655555553222111111 11222
Q ss_pred eeecc-----CccccceeeccCCCeeeEEEEEEEEEeecCCeEEEeEecCCcceeEEEEEEeccccccCCCCCCCCCCc-
Q psy12789 226 FTSHI-----SNQHHTLSKRSDQTTETNFVEVQILKFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHG- 299 (514)
Q Consensus 226 ~~~~~-----~~~~~~~~~R~~~~~~~~~~~~~~~~~l~~G~~~l~~~nd~~~~~~v~~~~~~~~~~~~~Cp~~C~~~G- 299 (514)
|-..+ .....+..+++. |+.+...+.++.+... ...+.|+.....+++.+++.. +...| .|++|+
T Consensus 215 f~~l~~Rps~~dldss~vLqDw-----vTaTDiRvvl~Rp~s~-G~~~dde~~l~rYfYAisdl~-VgGRC--KCNgHAs 285 (592)
T KOG3512|consen 215 FFELEDRPSAFDLDSSPVLQDW-----VTATDIRVVLLRPASL-GEEYDDEANLARYFYAISDLA-VGGRC--KCNGHAS 285 (592)
T ss_pred eeeecCCccccccccchhhhhh-----eeeeeeEEEEechhhc-CCcchhhhhhhhhheecccce-eeeee--eecCccc
Confidence 21110 011233334444 5555555666655421 122445555444667776554 22334 266663
Q ss_pred EEe-----CCeEecCCCCcCCCCCC
Q psy12789 300 SCY-----LGKCDCIDGYEGTDCSK 319 (514)
Q Consensus 300 ~C~-----~g~C~C~~Gf~G~~Ce~ 319 (514)
.|+ ...|.|..+..|++|+.
T Consensus 286 ~Cv~d~~~~ltCdC~HNTaGPdCgr 310 (592)
T KOG3512|consen 286 RCVMDESSHLTCDCEHNTAGPDCGR 310 (592)
T ss_pred eeeeccCCceEEecccCCCCCCccc
Confidence 676 25899999999999974
No 4
>KOG1226|consensus
Probab=99.52 E-value=1.4e-13 Score=150.91 Aligned_cols=177 Identities=27% Similarity=0.589 Sum_probs=129.6
Q ss_pred ccCCCeeeEEEEEEEEEeecCCeEEEeEecCCcceeEEEEEEe---cccccc--CCCCCCCCCCcEEeCCeEecCCCCcC
Q psy12789 240 RSDQTTETNFVEVQILKFLMSGKWFLSVYNDDVKTHEIKLLIK---EAEGVS--STCPNGCSGHGSCYLGKCDCIDGYEG 314 (514)
Q Consensus 240 R~~~~~~~~~~~~~~~~~l~~G~~~l~~~nd~~~~~~v~~~~~---~~~~~~--~~Cp~~C~~~G~C~~g~C~C~~Gf~G 314 (514)
+.+++.++|.+.++...+......+...+.+..-...+.+.+. ++.+.. ..=...|+++|.++.|.|.|.+||.|
T Consensus 409 i~~gd~v~f~v~~~~~~C~~~~~~~~~~i~pvgf~e~l~v~v~~~C~C~C~~~~e~~s~~C~g~G~~~CG~C~C~~G~~G 488 (783)
T KOG1226|consen 409 ITIGDEVTFEVSVTAKKCPPEDQKGSFIIRPVGFTETLEVIVQYNCECDCQDQGEPNSALCHGNGTFVCGQCRCDEGWLG 488 (783)
T ss_pred cccCceeEEEEecccccCCCccccceEEEccCCCCcceEEEeeccccccccccCCCCccccCCCCcEEecceecCCCCCC
Confidence 3556778899999888888332212222222222222333222 111111 12235699999999999999999999
Q ss_pred CCCCCC-----------CC-----CCCCCCCCeecCceeecCCCCC----CCCCCCCCCCCCCC---CCCCCceeeCCce
Q psy12789 315 TDCSKS-----------VC-----PVLCSNHGKYGGGICHCENGWK----GPECDIPASDCQYS---DCSGHGSCVEGTC 371 (514)
Q Consensus 315 ~~Ce~~-----------~C-----~~~C~~~G~c~~~~C~C~~G~~----G~~Ce~~i~eC~~~---~C~~~G~C~~~~C 371 (514)
..|+-+ .| ...|+++|.|..|.|.|.+... |+.|+.+...|... .|.++|.|..++|
T Consensus 489 ~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG~C 568 (783)
T KOG1226|consen 489 KKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECGRC 568 (783)
T ss_pred CcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCCcE
Confidence 998631 24 2489999999999999999877 99999887777543 6999999999999
Q ss_pred ecCCCCCccccC----CCCCC----CCCCCCCeeeccCCceeeecCCC-cccCCCCcc
Q psy12789 372 HCQSGWKGIGCQ----EAGCP----NACNRHGTCAFENEEYQCVCAEG-WAGVDCNIK 420 (514)
Q Consensus 372 ~C~~Gy~G~~C~----~~~C~----~~C~~~G~C~~~~Gsy~C~C~~G-y~G~~Ce~~ 420 (514)
+|.+||+|..|+ .+.|. ..|+++|+|... +|.|... |.|..|+..
T Consensus 569 vC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~~sG~~CE~c 622 (783)
T KOG1226|consen 569 VCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKCTDPPYSGEFCEKC 622 (783)
T ss_pred EcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEcCCCCcCcchhhcC
Confidence 999999999986 45673 369999999876 8999765 999999965
No 5
>KOG1219|consensus
Probab=99.52 E-value=6.6e-14 Score=163.21 Aligned_cols=95 Identities=29% Similarity=0.831 Sum_probs=85.3
Q ss_pred CCCCCCee-----cCceeecCCCCCCCCCCCCCCCCCCCCCCCCceeeC----CceecCCCCCccccCC---CCCC-CCC
Q psy12789 325 LCSNHGKY-----GGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVE----GTCHCQSGWKGIGCQE---AGCP-NAC 391 (514)
Q Consensus 325 ~C~~~G~c-----~~~~C~C~~G~~G~~Ce~~i~eC~~~~C~~~G~C~~----~~C~C~~Gy~G~~C~~---~~C~-~~C 391 (514)
+|.++|.| ++|.|.|++-|.|.+|+.++..|.++||..+|+|+. ..|.|+.||+|..|+. ++|. +.|
T Consensus 3871 pCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~C 3950 (4289)
T KOG1219|consen 3871 PCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGISECSKNVC 3950 (4289)
T ss_pred cccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecccccccccccc
Confidence 45666666 678999999999999999999999999999999985 3899999999999985 5696 899
Q ss_pred CCCCeeeccCCceeeecCCCcccCCCCc
Q psy12789 392 NRHGTCAFENEEYQCVCAEGWAGVDCNI 419 (514)
Q Consensus 392 ~~~G~C~~~~Gsy~C~C~~Gy~G~~Ce~ 419 (514)
.++|.|++..|+|.|.|.+||.|..|..
T Consensus 3951 ~~gg~C~n~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3951 GTGGQCINIPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred cCCceeeccCCceEeccChhHhcccCcc
Confidence 9999999999999999999999999853
No 6
>KOG4289|consensus
Probab=99.23 E-value=1.4e-11 Score=140.12 Aligned_cols=78 Identities=35% Similarity=0.992 Sum_probs=67.1
Q ss_pred eEecCCCCcCCCCCC--CCC-CCCCCCCCee----cCceeecCCCCCCCCCCCCC--CCCCCCCCCCCceeeCC-----c
Q psy12789 305 KCDCIDGYEGTDCSK--SVC-PVLCSNHGKY----GGGICHCENGWKGPECDIPA--SDCQYSDCSGHGSCVEG-----T 370 (514)
Q Consensus 305 ~C~C~~Gf~G~~Ce~--~~C-~~~C~~~G~c----~~~~C~C~~G~~G~~Ce~~i--~eC~~~~C~~~G~C~~~-----~ 370 (514)
.|+|++||+|+.|+. ..| ..+|+++|.| ++|+|.|.+||+|.+|+.+. ..|.+..|.++|+|++- .
T Consensus 1223 rCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~ 1302 (2531)
T KOG4289|consen 1223 RCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFC 1302 (2531)
T ss_pred eEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCcee
Confidence 799999999999975 458 5689999999 78999999999999998654 35888899999999862 7
Q ss_pred eecCCC-CCcccc
Q psy12789 371 CHCQSG-WKGIGC 382 (514)
Q Consensus 371 C~C~~G-y~G~~C 382 (514)
|+|+.| |.++.|
T Consensus 1303 c~Cp~ge~e~prC 1315 (2531)
T KOG4289|consen 1303 CHCPYGEFEDPRC 1315 (2531)
T ss_pred ccCCCcccCCCce
Confidence 899988 567778
No 7
>KOG1219|consensus
Probab=99.17 E-value=4e-11 Score=140.78 Aligned_cols=110 Identities=25% Similarity=0.687 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCCCCCceeeC-----CceecCCCCCccccCC--CCC-CCCCCCCCeeeccCCceeeecCCCcccCCCCc
Q psy12789 348 CDIPASDCQYSDCSGHGSCVE-----GTCHCQSGWKGIGCQE--AGC-PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419 (514)
Q Consensus 348 Ce~~i~eC~~~~C~~~G~C~~-----~~C~C~~Gy~G~~C~~--~~C-~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~Ce~ 419 (514)
|..-.+.|..+||.++|+|.. +.|.|++-|.|..|++ ..| +++|..+|+|+...++|.|.|+.||+|..|+.
T Consensus 3860 C~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~ 3939 (4289)
T KOG1219|consen 3860 CSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEA 3939 (4289)
T ss_pred ccccccccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeec
Confidence 433336788999999999985 3999999999999985 478 69999999999999999999999999999985
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCeEecCCCc-eeecCCCCceeeccc
Q psy12789 420 KLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHI-MCLASNDPVEVLLRK 471 (514)
Q Consensus 420 ~~~~~C~d~~~~d~~g~~eC~d~~C~~~~~C~n~~g~-~C~~~~~p~~~~l~~ 471 (514)
. |+.+|+-.+|..++.|.|.+|. .|.|+++..+..+..
T Consensus 3940 ~--------------Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3940 R--------------GISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred c--------------cccccccccccCCceeeccCCceEeccChhHhcccCcc
Confidence 4 5789999999999999999986 699999877655543
No 8
>KOG1226|consensus
Probab=99.04 E-value=3.8e-10 Score=124.34 Aligned_cols=121 Identities=36% Similarity=0.921 Sum_probs=98.5
Q ss_pred CCCCCCcEEeCCeEecCCCCc----CCCCCC--CCCCC----CCCCCCeecCceeecCCCCCCCCCCCC--CCCCCCC--
Q psy12789 293 NGCSGHGSCYLGKCDCIDGYE----GTDCSK--SVCPV----LCSNHGKYGGGICHCENGWKGPECDIP--ASDCQYS-- 358 (514)
Q Consensus 293 ~~C~~~G~C~~g~C~C~~Gf~----G~~Ce~--~~C~~----~C~~~G~c~~~~C~C~~G~~G~~Ce~~--i~eC~~~-- 358 (514)
..|+++|.|+.|+|.|.+... |..|+. ..|+. .|+++|.|..+.|+|.+||+|..|+.+ .+.|.+.
T Consensus 514 ~vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~~~G 593 (783)
T KOG1226|consen 514 PVCSGRGDCVCGQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECGRCVCNPGWTGSACNCPLSTDTCESSDG 593 (783)
T ss_pred CCcCCCCcEeCCceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCCcEEcCCCCccCCCCCCCCCccccCCCC
Confidence 379999999999999999887 888864 34653 599999999999999999999988754 4567644
Q ss_pred -CCCCCceeeCCceecCCC-CCccccCC-CCCCCCCCCCCeeeccCCceeee-cCCCcccCCCCc
Q psy12789 359 -DCSGHGSCVEGTCHCQSG-WKGIGCQE-AGCPNACNRHGTCAFENEEYQCV-CAEGWAGVDCNI 419 (514)
Q Consensus 359 -~C~~~G~C~~~~C~C~~G-y~G~~C~~-~~C~~~C~~~G~C~~~~Gsy~C~-C~~Gy~G~~Ce~ 419 (514)
.|+++|+|..++|.|... |.|..|+. +.|+.+|..+..|+ .|. +..|+.+..|..
T Consensus 594 ~iCSGrG~C~Cg~C~C~~~~~sG~~CE~cptc~~~C~~~~~Cv------eC~~~~~g~~~~~C~~ 652 (783)
T KOG1226|consen 594 QICSGRGTCECGRCKCTDPPYSGEFCEKCPTCPDPCAENKSCV------ECQAFETGPVGDTCVE 652 (783)
T ss_pred ceeCCCceeeCCceEcCCCCcCcchhhcCCCCCCcccccccch------hhcccccccccchHHH
Confidence 599999999999999876 99999995 57888898888776 332 455677777654
No 9
>KOG4289|consensus
Probab=98.98 E-value=1e-09 Score=125.50 Aligned_cols=98 Identities=24% Similarity=0.670 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCceeeC-------------------------C-ceecCCCCCccccC--CCCC-CCCCCCCCeeeccCCc
Q psy12789 353 SDCQYSDCSGHGSCVE-------------------------G-TCHCQSGWKGIGCQ--EAGC-PNACNRHGTCAFENEE 403 (514)
Q Consensus 353 ~eC~~~~C~~~G~C~~-------------------------~-~C~C~~Gy~G~~C~--~~~C-~~~C~~~G~C~~~~Gs 403 (514)
+-|...||.+...|+. + .|.|++||+|+.|+ +|.| .++|.++|+|....|+
T Consensus 1180 niClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEgg 1259 (2531)
T KOG4289|consen 1180 NICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGG 1259 (2531)
T ss_pred chhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCc
Confidence 4577778888888842 1 79999999999997 6899 6899999999999999
Q ss_pred eeeecCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCeEecCCCc--eeecCCC
Q psy12789 404 YQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHI--MCLASND 463 (514)
Q Consensus 404 y~C~C~~Gy~G~~Ce~~~~~~C~d~~~~d~~g~~eC~d~~C~~~~~C~n~~g~--~C~~~~~ 463 (514)
|+|.|.+||+|..|++... ..-|..+.|-++++|.+.... -|.|++.
T Consensus 1260 YtCeCrpg~tGehCEvs~~-------------agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1260 YTCECRPGFTGEHCEVSAR-------------AGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred eeEEecCCccccceeeecc-------------cCccccceecCCCEEeecCCCceeccCCCc
Confidence 9999999999999998754 346889999999999987643 5777765
No 10
>KOG1214|consensus
Probab=98.79 E-value=2.7e-08 Score=109.74 Aligned_cols=124 Identities=27% Similarity=0.728 Sum_probs=91.4
Q ss_pred CCCCCCcEEeC-----CeEecCCCCcCC--CCCC----CCCCCCCCCCCee----cCceeecCCCCC----CCCCCC---
Q psy12789 293 NGCSGHGSCYL-----GKCDCIDGYEGT--DCSK----SVCPVLCSNHGKY----GGGICHCENGWK----GPECDI--- 350 (514)
Q Consensus 293 ~~C~~~G~C~~-----g~C~C~~Gf~G~--~Ce~----~~C~~~C~~~G~c----~~~~C~C~~G~~----G~~Ce~--- 350 (514)
..|..+..|.. ++|.|..||.|+ .|.. ..|...|..+..| ++++|.|..||. +-+|-.
T Consensus 700 h~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~ 779 (1289)
T KOG1214|consen 700 HMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITP 779 (1289)
T ss_pred cccCCCccccCCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecC
Confidence 44666778874 499999999864 5642 2356778877777 678898888874 345631
Q ss_pred --CCCCCCCC--CCCCCcee--eC-----CceecCCCCCccc---cCCCCC-CCCCCCCCeeeccCCceeeecCCCcccC
Q psy12789 351 --PASDCQYS--DCSGHGSC--VE-----GTCHCQSGWKGIG---CQEAGC-PNACNRHGTCAFENEEYQCVCAEGWAGV 415 (514)
Q Consensus 351 --~i~eC~~~--~C~~~G~C--~~-----~~C~C~~Gy~G~~---C~~~~C-~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~ 415 (514)
..+.|+.. .|.-.|+| +. +.|.|.+||.|+. |+.|+| ++.|...++|.+++|++.|.|.+||.|+
T Consensus 780 pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 780 PAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred CCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccccccCccccCCCceEecCCCcceeecccCccCC
Confidence 23456433 56555544 32 3899999999874 567999 6899999999999999999999999975
Q ss_pred C
Q psy12789 416 D 416 (514)
Q Consensus 416 ~ 416 (514)
.
T Consensus 860 G 860 (1289)
T KOG1214|consen 860 G 860 (1289)
T ss_pred C
Confidence 4
No 11
>KOG4260|consensus
Probab=98.31 E-value=4.7e-07 Score=89.49 Aligned_cols=113 Identities=35% Similarity=0.897 Sum_probs=75.0
Q ss_pred CCCCCCcEEe-------CCeEecCCCCcCCCCCC--------------CC---CCC----CCCCCCeecCcee-ecCCCC
Q psy12789 293 NGCSGHGSCY-------LGKCDCIDGYEGTDCSK--------------SV---CPV----LCSNHGKYGGGIC-HCENGW 343 (514)
Q Consensus 293 ~~C~~~G~C~-------~g~C~C~~Gf~G~~Ce~--------------~~---C~~----~C~~~G~c~~~~C-~C~~G~ 343 (514)
..|.++|.|. +|+|.|.+||.|+.|.. .+ |.. .|+..+ +-.| .|+.||
T Consensus 150 r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~---~k~C~kCkkGW 226 (350)
T KOG4260|consen 150 RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGES---SKGCSKCKKGW 226 (350)
T ss_pred CCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCC---CCChhhhcccc
Confidence 4599999997 47999999999998742 01 211 222211 1123 377888
Q ss_pred CC--CCCCCCCCCCC--CCCCCCCceeeCC----ceecCCCCCccccCCCCC---CCCC-CCCCeeeccCCceeeecCCC
Q psy12789 344 KG--PECDIPASDCQ--YSDCSGHGSCVEG----TCHCQSGWKGIGCQEAGC---PNAC-NRHGTCAFENEEYQCVCAEG 411 (514)
Q Consensus 344 ~G--~~Ce~~i~eC~--~~~C~~~G~C~~~----~C~C~~Gy~G~~C~~~~C---~~~C-~~~G~C~~~~Gsy~C~C~~G 411 (514)
.- ..| .|+++|. +.+|..+..|+|. .|.+.+||.+. .++| ...| ..++.|.+..+.|+|+|..|
T Consensus 227 ~lde~gC-vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g---~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~ 302 (350)
T KOG4260|consen 227 KLDEEGC-VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG---VDECQFCADVCASKNRPCMNIDGQYRCVCFSG 302 (350)
T ss_pred eeccccc-ccHHHHhcCCCCCChhheeecCCCceEecccccccCC---hHHhhhhhhhcccCCCCcccCCccEEEEeccc
Confidence 63 346 5778883 5578888888873 78888888763 3344 2344 34577888888888888877
Q ss_pred c
Q psy12789 412 W 412 (514)
Q Consensus 412 y 412 (514)
+
T Consensus 303 ~ 303 (350)
T KOG4260|consen 303 L 303 (350)
T ss_pred c
Confidence 6
No 12
>KOG4260|consensus
Probab=98.22 E-value=1.3e-06 Score=86.41 Aligned_cols=103 Identities=37% Similarity=0.930 Sum_probs=73.0
Q ss_pred cCCCCcCCCCCCCCCC----CCCCCCCee-------cCceeecCCCCCCCCCCCCCC------------CCC--CCCCCC
Q psy12789 308 CIDGYEGTDCSKSVCP----VLCSNHGKY-------GGGICHCENGWKGPECDIPAS------------DCQ--YSDCSG 362 (514)
Q Consensus 308 C~~Gf~G~~Ce~~~C~----~~C~~~G~c-------~~~~C~C~~G~~G~~Ce~~i~------------eC~--~~~C~~ 362 (514)
|++|..|++|. .|+ ..|.++|.| +++.|.|..||.|+.|..-.. -|. ...|.
T Consensus 132 Cp~gtyGpdCl--~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~- 208 (350)
T KOG4260|consen 132 CPDGTYGPDCL--QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCL- 208 (350)
T ss_pred cCCCCcCCccc--cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhh-
Confidence 67888999985 342 457777776 678999999999999852110 011 01222
Q ss_pred CceeeC---Cce-ecCCCCCcc--cc-CCCCC---CCCCCCCCeeeccCCceeeecCCCccc
Q psy12789 363 HGSCVE---GTC-HCQSGWKGI--GC-QEAGC---PNACNRHGTCAFENEEYQCVCAEGWAG 414 (514)
Q Consensus 363 ~G~C~~---~~C-~C~~Gy~G~--~C-~~~~C---~~~C~~~G~C~~~~Gsy~C~C~~Gy~G 414 (514)
+.|.. ..| .|..||.-+ .| ++++| +.+|..+..|+|+.|+|.|.+.+||.+
T Consensus 209 -~~Csg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 209 -GVCSGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred -cccCCCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 24443 256 689999733 35 46788 578999999999999999999999976
No 13
>KOG1217|consensus
Probab=98.22 E-value=1.1e-05 Score=85.78 Aligned_cols=155 Identities=30% Similarity=0.839 Sum_probs=103.4
Q ss_pred CCCCCcEEeC----CeEecCCCCcCCCCCCC---------------------CCC---CCCCCC-Cee----cCceeecC
Q psy12789 294 GCSGHGSCYL----GKCDCIDGYEGTDCSKS---------------------VCP---VLCSNH-GKY----GGGICHCE 340 (514)
Q Consensus 294 ~C~~~G~C~~----g~C~C~~Gf~G~~Ce~~---------------------~C~---~~C~~~-G~c----~~~~C~C~ 340 (514)
.|.+.+.|.+ +.|.|.+||.|..|+.. .|. ..|... +.+ +++.|.|+
T Consensus 178 ~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~ 257 (487)
T KOG1217|consen 178 PCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCP 257 (487)
T ss_pred CcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCcccccccccCCCCcccccCCceeeeCC
Confidence 3777778863 57999999998887643 111 112111 332 45688888
Q ss_pred CCCCCCCC--CCCCCCCCCCC-CCCCceeeC----CceecCCCCCcccc----CCCCCC-----CCCCCCCeee--ccCC
Q psy12789 341 NGWKGPEC--DIPASDCQYSD-CSGHGSCVE----GTCHCQSGWKGIGC----QEAGCP-----NACNRHGTCA--FENE 402 (514)
Q Consensus 341 ~G~~G~~C--e~~i~eC~~~~-C~~~G~C~~----~~C~C~~Gy~G~~C----~~~~C~-----~~C~~~G~C~--~~~G 402 (514)
+||.+..+ ..++++|.... |.++++|.+ +.|.|++||.|..| +...|. ..|.+++.|. ...+
T Consensus 258 ~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~ 337 (487)
T KOG1217|consen 258 EGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFG 337 (487)
T ss_pred CCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCC
Confidence 88888762 34567786653 888888875 37889999998887 124552 4577777883 3335
Q ss_pred ceeeecCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCeEec-CC-CceeecCCC
Q psy12789 403 EYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSD-QP-HIMCLASND 463 (514)
Q Consensus 403 sy~C~C~~Gy~G~~Ce~~~~~~C~d~~~~d~~g~~eC~d~~C~~~~~C~n-~~-g~~C~~~~~ 463 (514)
.+.|.|..||.|..|+... ++|...+|..++.|.+ .. ...|.+..+
T Consensus 338 ~~~C~c~~~~~g~~C~~~~---------------~~C~~~~~~~~~~c~~~~~~~~~c~~~~~ 385 (487)
T KOG1217|consen 338 GFRCACGPGFTGRRCEDSN---------------DECASSPCCPGGTCVNETPGSYRCACPAG 385 (487)
T ss_pred CCCcCCCCCCCCCccccCC---------------ccccCCccccCCEeccCCCCCeEecCCCc
Confidence 6779999998888887542 3677777888888887 33 335666554
No 14
>KOG1214|consensus
Probab=98.16 E-value=7.3e-06 Score=91.14 Aligned_cols=119 Identities=24% Similarity=0.696 Sum_probs=87.5
Q ss_pred CceeecCCCCC--CCCCCCCCCCCCC--CCCCCCceeeC----CceecCCCCC--c--cccC-------CCCCC---CCC
Q psy12789 334 GGICHCENGWK--GPECDIPASDCQY--SDCSGHGSCVE----GTCHCQSGWK--G--IGCQ-------EAGCP---NAC 391 (514)
Q Consensus 334 ~~~C~C~~G~~--G~~Ce~~i~eC~~--~~C~~~G~C~~----~~C~C~~Gy~--G--~~C~-------~~~C~---~~C 391 (514)
.++|.|..||. |+.| .++++|.. ..|..+..|++ .+|.|..||. + ..|- .+.|. ..|
T Consensus 715 ~~tcecs~g~~gdgr~c-~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C 793 (1289)
T KOG1214|consen 715 DYTCECSSGYQGDGRNC-VDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTC 793 (1289)
T ss_pred ceEEEEeeccCCCCCCC-CChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCcccc
Confidence 45999999997 5688 46778853 46999999996 3788877764 3 3563 34563 568
Q ss_pred CCCCeee--cc-CCceeeecCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCeEecCCCc-eeecCCCCcee
Q psy12789 392 NRHGTCA--FE-NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHI-MCLASNDPVEV 467 (514)
Q Consensus 392 ~~~G~C~--~~-~Gsy~C~C~~Gy~G~~Ce~~~~~~C~d~~~~d~~g~~eC~d~~C~~~~~C~n~~g~-~C~~~~~p~~~ 467 (514)
.-.|+|. .. .++|.|.|.|||.|+.=. |.++++|....|...+.|.++++. .|+|.+++...
T Consensus 794 ~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~--------------c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 794 AIAGQARCVHHGGSTYSCACLPGFSGDGHQ--------------CTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred CcCCceEEEecCCceEEEeecCCccCCccc--------------cccccccCccccCCCceEecCCCcceeecccCccCC
Confidence 7666554 33 457999999999986522 234579999999999999999987 68888876643
No 15
>KOG1217|consensus
Probab=98.16 E-value=1.5e-05 Score=84.58 Aligned_cols=153 Identities=29% Similarity=0.723 Sum_probs=106.8
Q ss_pred CCeEecCCCCcCCCCCCC-CCCCC---CCCCCeec-------CceeecCCCCCCCCCCCCCCCCC--CCCCCCCceeeCC
Q psy12789 303 LGKCDCIDGYEGTDCSKS-VCPVL---CSNHGKYG-------GGICHCENGWKGPECDIPASDCQ--YSDCSGHGSCVEG 369 (514)
Q Consensus 303 ~g~C~C~~Gf~G~~Ce~~-~C~~~---C~~~G~c~-------~~~C~C~~G~~G~~Ce~~i~eC~--~~~C~~~G~C~~~ 369 (514)
.+.|.|.+||.|..|+.. .|... +...+.+. .+.|.|..||.+..|....++|. ..+|.+++.|.+.
T Consensus 109 ~~~c~c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~ 188 (487)
T KOG1217|consen 109 SYECTCPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNT 188 (487)
T ss_pred CceeeCCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCCcccccC
Confidence 367999999999988764 35322 22333332 57899999999999876556786 3358888999863
Q ss_pred ----ceecCCCCCccccCCC---------------------CCC---CCCCCC-CeeeccCCceeeecCCCcccCCCCcc
Q psy12789 370 ----TCHCQSGWKGIGCQEA---------------------GCP---NACNRH-GTCAFENEEYQCVCAEGWAGVDCNIK 420 (514)
Q Consensus 370 ----~C~C~~Gy~G~~C~~~---------------------~C~---~~C~~~-G~C~~~~Gsy~C~C~~Gy~G~~Ce~~ 420 (514)
.|.|++||.|..|+.. .|. ..|... ++|.+..+++.|.|++||.+..+.
T Consensus 189 ~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~-- 266 (487)
T KOG1217|consen 189 GGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACV-- 266 (487)
T ss_pred CCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCccccccc--
Confidence 6999999998877643 221 124333 889988888999999999988741
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC-CCCCCeEecCCC-ceeecCCCCceee
Q psy12789 421 LEMSCNDDTDNDKDGVTDCSDSD-CCSQPVCSDQPH-IMCLASNDPVEVL 468 (514)
Q Consensus 421 ~~~~C~d~~~~d~~g~~eC~d~~-C~~~~~C~n~~g-~~C~~~~~p~~~~ 468 (514)
.+..+++|.... |..+++|.+..+ ..|.+........
T Consensus 267 -----------~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~ 305 (487)
T KOG1217|consen 267 -----------TCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRL 305 (487)
T ss_pred -----------eeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCC
Confidence 123456777764 778888998776 5676666554433
No 16
>KOG0994|consensus
Probab=97.69 E-value=0.00016 Score=83.11 Aligned_cols=132 Identities=30% Similarity=0.814 Sum_probs=78.0
Q ss_pred CCCCCCCCcEEe--CCeEecCCCCcCCCCCC----------CCC-CCCCCCCCee------cCceeecCCCCCCCCCCCC
Q psy12789 291 CPNGCSGHGSCY--LGKCDCIDGYEGTDCSK----------SVC-PVLCSNHGKY------GGGICHCENGWKGPECDIP 351 (514)
Q Consensus 291 Cp~~C~~~G~C~--~g~C~C~~Gf~G~~Ce~----------~~C-~~~C~~~G~c------~~~~C~C~~G~~G~~Ce~~ 351 (514)
|.+.-+-.+.|. -|+|.|+|+-.|..|+. ..| +..|...|.. .+++|.|.+|..|..|...
T Consensus 767 CnptGSlS~vCn~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCnqC 846 (1758)
T KOG0994|consen 767 CNPTGSLSSVCNPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCNQC 846 (1758)
T ss_pred cCCCccccccccCCCceecccCccccccccccCCcccCcCCccCccccccccccccccccccccceeeccccchhhcccc
Confidence 333344456676 37999999999998863 112 1234333332 4689999999999888642
Q ss_pred ------CCCCCCCCCCCCc--------eeeC-------Cce-ecCCCCCcc-------ccCCCCCCC-CCCC---CCeee
Q psy12789 352 ------ASDCQYSDCSGHG--------SCVE-------GTC-HCQSGWKGI-------GCQEAGCPN-ACNR---HGTCA 398 (514)
Q Consensus 352 ------i~eC~~~~C~~~G--------~C~~-------~~C-~C~~Gy~G~-------~C~~~~C~~-~C~~---~G~C~ 398 (514)
..+|.+..|.+|+ .|++ ..| .|..||.|+ .|..-.||. +=++ .-.|.
T Consensus 847 qpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~ 926 (1758)
T KOG0994|consen 847 QPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCY 926 (1758)
T ss_pred CCCccCCCcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccchhcccccc
Confidence 2345555565553 3332 155 577787654 233333431 1111 12454
Q ss_pred ccC--CceeeecCCCcccCCCCcccc
Q psy12789 399 FEN--EEYQCVCAEGWAGVDCNIKLE 422 (514)
Q Consensus 399 ~~~--Gsy~C~C~~Gy~G~~Ce~~~~ 422 (514)
... ....|.|.+||.|..|+...+
T Consensus 927 ~d~~t~~ivC~C~~GY~G~RCe~CA~ 952 (1758)
T KOG0994|consen 927 LDTRTQQIVCHCQEGYSGSRCEICAD 952 (1758)
T ss_pred ccccccceeeecccCccccchhhhcc
Confidence 332 345899999999999986543
No 17
>KOG0994|consensus
Probab=97.37 E-value=0.00013 Score=83.69 Aligned_cols=112 Identities=33% Similarity=0.863 Sum_probs=72.2
Q ss_pred eE-ecCCCCcCC----CCCCCCCCCCCCC-CCee--cCceeecCCCCCCCCCCCCC---------CCCCCCCCCC--Cce
Q psy12789 305 KC-DCIDGYEGT----DCSKSVCPVLCSN-HGKY--GGGICHCENGWKGPECDIPA---------SDCQYSDCSG--HGS 365 (514)
Q Consensus 305 ~C-~C~~Gf~G~----~Ce~~~C~~~C~~-~G~c--~~~~C~C~~G~~G~~Ce~~i---------~eC~~~~C~~--~G~ 365 (514)
+| +|.+||.|+ +|..-.|.-+=.+ .+.| .+++|.|.+...|..|+... .-|++..|.. .-+
T Consensus 999 hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pq 1078 (1758)
T KOG0994|consen 999 HCEHCKDGFYGDALRQNCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQ 1078 (1758)
T ss_pred chhhccccchhHHHHhhhhhheccccccCCccccccccCcCCCCcccccccccccccchhccccCCCCCccCCCccCCcc
Confidence 45 578888886 3554344211111 1222 57899999999999987421 1244444543 236
Q ss_pred eeC--CceecCCCCCccccCC----------CCC-CCCCCCCC----eeeccCCceeeecCCCcccCCCC
Q psy12789 366 CVE--GTCHCQSGWKGIGCQE----------AGC-PNACNRHG----TCAFENEEYQCVCAEGWAGVDCN 418 (514)
Q Consensus 366 C~~--~~C~C~~Gy~G~~C~~----------~~C-~~~C~~~G----~C~~~~Gsy~C~C~~Gy~G~~Ce 418 (514)
|.. ++|+|.+||.|..|+. ..| .-.|...| +|....| +|.|.+|-.|..|+
T Consensus 1079 CN~ftGQCqCkpGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCdr~tG--~C~C~~Gv~G~rCd 1146 (1758)
T KOG0994|consen 1079 CNEFTGQCQCKPGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCDRATG--RCVCRPGVGGPRCD 1146 (1758)
T ss_pred ccccccceeccCCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCccccCC--ceeecCCCCCcchh
Confidence 754 6999999999999852 134 23455555 5766555 89999999999997
No 18
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.30 E-value=0.00016 Score=49.47 Aligned_cols=28 Identities=36% Similarity=0.839 Sum_probs=25.4
Q ss_pred CCCCCCCCeeeccC-CceeeecCCCcccC
Q psy12789 388 PNACNRHGTCAFEN-EEYQCVCAEGWAGV 415 (514)
Q Consensus 388 ~~~C~~~G~C~~~~-Gsy~C~C~~Gy~G~ 415 (514)
+++|.++|+|+... ++|.|.|++||+|.
T Consensus 3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 3 SNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 36899999999988 89999999999996
No 19
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.14 E-value=0.00058 Score=47.65 Aligned_cols=35 Identities=34% Similarity=0.938 Sum_probs=29.4
Q ss_pred CCCCC--CCCCCCCeeeccCCceeeecCCCcc-cCCCC
Q psy12789 384 EAGCP--NACNRHGTCAFENEEYQCVCAEGWA-GVDCN 418 (514)
Q Consensus 384 ~~~C~--~~C~~~G~C~~~~Gsy~C~C~~Gy~-G~~Ce 418 (514)
+++|. .+|.++|.|.+..|+|.|.|++||. |..|+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 35664 5798889999999999999999999 87774
No 20
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.10 E-value=0.00053 Score=47.03 Aligned_cols=25 Identities=60% Similarity=1.410 Sum_probs=22.1
Q ss_pred CCCCCCcEEe--CCeEecCCCCcCCCC
Q psy12789 293 NGCSGHGSCY--LGKCDCIDGYEGTDC 317 (514)
Q Consensus 293 ~~C~~~G~C~--~g~C~C~~Gf~G~~C 317 (514)
..|++||+|+ .++|.|.+||+|+.|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 3599999999 689999999999876
No 21
>KOG4659|consensus
Probab=97.02 E-value=0.00011 Score=85.31 Aligned_cols=53 Identities=43% Similarity=0.694 Sum_probs=48.0
Q ss_pred EeccCCceeeeeccCCCccchhhheeeeeEEeeCccchhhhhhhhhhhhhhhcc
Q psy12789 12 CLASNDPVEVLLRKQPPSVTASFYQRVKFLVEENSVQSYAHMDEYSERYFNSIS 65 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (514)
|.+.-+|++||+|++|+.. |+||||||||+-|.|+|+|+....+.|+|..-|-
T Consensus 3 c~~a~~pi~vl~r~~p~~~-a~f~~r~~fli~e~s~q~y~~~~~fne~~~~vIr 55 (1899)
T KOG4659|consen 3 CSTAASPIEVLMRMPPIFN-ANFAQRVKFLIMEKSVQSYTDSSQFNENRISVIR 55 (1899)
T ss_pred CCcccChHHHHhhcCCccc-hhHHHhhheeechhhhcccCchhhhccccceEEe
Confidence 5566789999999999998 9999999999999999999999999999876553
No 22
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.96 E-value=0.00061 Score=49.43 Aligned_cols=30 Identities=30% Similarity=0.882 Sum_probs=26.7
Q ss_pred CCCCC---CCCCCCCeeeccCCceeeecCCCcc
Q psy12789 384 EAGCP---NACNRHGTCAFENEEYQCVCAEGWA 413 (514)
Q Consensus 384 ~~~C~---~~C~~~G~C~~~~Gsy~C~C~~Gy~ 413 (514)
++||. +.|..++.|+|..|+|.|.|++||.
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 56773 5798899999999999999999997
No 23
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.75 E-value=0.002 Score=44.18 Aligned_cols=34 Identities=35% Similarity=1.001 Sum_probs=28.4
Q ss_pred CCCC--CCCCCCCeeeccCCceeeecCCCcccCCCC
Q psy12789 385 AGCP--NACNRHGTCAFENEEYQCVCAEGWAGVDCN 418 (514)
Q Consensus 385 ~~C~--~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~Ce 418 (514)
++|. .+|.+++.|.+..++|.|.|.+||.|..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 4564 478888999999999999999999997774
No 24
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.57 E-value=0.0027 Score=43.59 Aligned_cols=26 Identities=46% Similarity=1.172 Sum_probs=17.2
Q ss_pred CCCCCCeeeccCCceeeecCCCcccCCC
Q psy12789 390 ACNRHGTCAFENEEYQCVCAEGWAGVDC 417 (514)
Q Consensus 390 ~C~~~G~C~~~~Gsy~C~C~~Gy~G~~C 417 (514)
.|+++|+|+...+ +|.|.+||+|..|
T Consensus 7 ~C~~~G~C~~~~g--~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSPCG--RCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCCCC--EEECCCCCcCCCC
Confidence 4777777765422 7777777777665
No 25
>KOG1836|consensus
Probab=96.29 E-value=0.0091 Score=73.48 Aligned_cols=36 Identities=31% Similarity=0.831 Sum_probs=26.1
Q ss_pred C-CCCCCCCCeeeccC--Cceeee-cCCCcccCCCCcccc
Q psy12789 387 C-PNACNRHGTCAFEN--EEYQCV-CAEGWAGVDCNIKLE 422 (514)
Q Consensus 387 C-~~~C~~~G~C~~~~--Gsy~C~-C~~Gy~G~~Ce~~~~ 422 (514)
| +-+|.+++.|.... .+..|. |++||+|..|+...+
T Consensus 777 C~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~d 816 (1705)
T KOG1836|consen 777 CQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECAD 816 (1705)
T ss_pred CccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCC
Confidence 5 35676777776543 567898 999999999986543
No 26
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.08 E-value=0.0075 Score=40.59 Aligned_cols=29 Identities=41% Similarity=1.078 Sum_probs=25.5
Q ss_pred CCCCCCCeeeccCCceeeecCCCcccC-CC
Q psy12789 389 NACNRHGTCAFENEEYQCVCAEGWAGV-DC 417 (514)
Q Consensus 389 ~~C~~~G~C~~~~Gsy~C~C~~Gy~G~-~C 417 (514)
.+|.+++.|.+..++|.|.|+.||.|. .|
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence 578888999999899999999999997 55
No 27
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.74 E-value=0.012 Score=40.23 Aligned_cols=28 Identities=32% Similarity=0.922 Sum_probs=24.3
Q ss_pred CCCCCCCeeeccCCceeeecCCCccc-CCC
Q psy12789 389 NACNRHGTCAFENEEYQCVCAEGWAG-VDC 417 (514)
Q Consensus 389 ~~C~~~G~C~~~~Gsy~C~C~~Gy~G-~~C 417 (514)
.+|.++ +|.+..++|.|.|++||.| ..|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence 468777 9999999999999999999 665
No 28
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.00 E-value=0.017 Score=40.72 Aligned_cols=28 Identities=29% Similarity=0.833 Sum_probs=22.3
Q ss_pred CCCCCCCeeeccCCceeeecCCCcccCC
Q psy12789 389 NACNRHGTCAFENEEYQCVCAEGWAGVD 416 (514)
Q Consensus 389 ~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~ 416 (514)
..|+.++.|.+..++|.|.|.+||.|..
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCC
Confidence 4688999999999999999999999853
No 29
>KOG1836|consensus
Probab=94.73 E-value=0.2 Score=62.15 Aligned_cols=51 Identities=31% Similarity=0.864 Sum_probs=36.4
Q ss_pred cCceeecCCCCCCCCCCCCC------------CCCCCCCCCCCceeeC------Ccee-cCCCCCccccC
Q psy12789 333 GGGICHCENGWKGPECDIPA------------SDCQYSDCSGHGSCVE------GTCH-CQSGWKGIGCQ 383 (514)
Q Consensus 333 ~~~~C~C~~G~~G~~Ce~~i------------~eC~~~~C~~~G~C~~------~~C~-C~~Gy~G~~C~ 383 (514)
.++.|.|.+.-.|..|+... ..|.+.+|.+.+.|.. +.|. |++||+|..|+
T Consensus 743 ~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe 812 (1705)
T KOG1836|consen 743 RTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCE 812 (1705)
T ss_pred CCCceecccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccc
Confidence 45667776666666665321 2388888888887764 3787 99999999986
No 30
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=94.70 E-value=0.017 Score=31.71 Aligned_cols=13 Identities=46% Similarity=1.566 Sum_probs=8.0
Q ss_pred eeecCCCcccCCC
Q psy12789 405 QCVCAEGWAGVDC 417 (514)
Q Consensus 405 ~C~C~~Gy~G~~C 417 (514)
.|.|++||+|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3677777777665
No 31
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.53 E-value=0.016 Score=39.53 Aligned_cols=26 Identities=35% Similarity=1.069 Sum_probs=20.7
Q ss_pred CCCCCCCCCceeeC-----CceecCCCCCcc
Q psy12789 355 CQYSDCSGHGSCVE-----GTCHCQSGWKGI 380 (514)
Q Consensus 355 C~~~~C~~~G~C~~-----~~C~C~~Gy~G~ 380 (514)
|.+.+|.++|+|+. +.|.|++||+|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 44668899999975 279999999886
No 32
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=94.27 E-value=0.056 Score=37.40 Aligned_cols=32 Identities=31% Similarity=1.015 Sum_probs=23.5
Q ss_pred CCCCCC-CCCCCCceeeCC----ceecCCCCC-ccccC
Q psy12789 352 ASDCQY-SDCSGHGSCVEG----TCHCQSGWK-GIGCQ 383 (514)
Q Consensus 352 i~eC~~-~~C~~~G~C~~~----~C~C~~Gy~-G~~C~ 383 (514)
+++|.. .+|.+++.|++. .|.|++||. |..|+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 456765 678888888752 689999998 77663
No 33
>smart00051 DSL delta serrate ligand.
Probab=94.10 E-value=0.052 Score=43.08 Aligned_cols=42 Identities=36% Similarity=0.777 Sum_probs=22.8
Q ss_pred ecCCCCCccccCCCCC--CCCCCCCCeeeccCCceeeecCCCcccCCC
Q psy12789 372 HCQSGWKGIGCQEAGC--PNACNRHGTCAFENEEYQCVCAEGWAGVDC 417 (514)
Q Consensus 372 ~C~~Gy~G~~C~~~~C--~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~C 417 (514)
.|.++|.|..|+. .| .+.+.++.+|.. .| .|.|.+||+|..|
T Consensus 20 ~C~~~~yG~~C~~-~C~~~~d~~~~~~Cd~-~G--~~~C~~Gw~G~~C 63 (63)
T smart00051 20 TCDENYYGEGCNK-FCRPRDDFFGHYTCDE-NG--NKGCLEGWMGPYC 63 (63)
T ss_pred eCCCCCcCCccCC-EeCcCccccCCccCCc-CC--CEecCCCCcCCCC
Confidence 4556666666642 23 133455566643 22 5667777776655
No 34
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=93.97 E-value=0.028 Score=30.84 Aligned_cols=13 Identities=38% Similarity=1.324 Sum_probs=7.7
Q ss_pred eEecCCCCcCCCC
Q psy12789 305 KCDCIDGYEGTDC 317 (514)
Q Consensus 305 ~C~C~~Gf~G~~C 317 (514)
.|.|++||+|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3667777776655
No 35
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=93.94 E-value=0.044 Score=54.78 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=47.8
Q ss_pred CcceecceeccccceeeEEeeecCCCCceeEeeccCCCCCcccceeEEEeeCccccccccccCCCCCCCCcceecCcccc
Q psy12789 111 SFQFWNSDFNIEQSAFFRFNFDLPRGSNFAVYGRRNVAPSITNYDFSEFIKDNTRTSAFFRFNFDLPRGSNFAVYGRRNV 190 (514)
Q Consensus 111 p~~fW~~~~~~~~p~~~~fn~tl~~~a~~~vygrr~~~ps~tqydf~Ell~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (514)
+.++|+|+-+...|+ .+||||.+|+.| |+.. . .+.+...+.+.+..+.. .+|+.|+
T Consensus 72 ~~TwWQS~~~~~~~~--~VtitLdL~k~f------------------evty--i-~l~F~s~RPa~~i~erS-d~G~tW~ 127 (238)
T smart00136 72 NPTWWQSEPLSNGPQ--NVNLTLDLGKEF------------------HVTY--V-ILKFCSPRPSLWILERS-DFGKTWQ 127 (238)
T ss_pred CCceecCCCcCCCCc--cEEEEEecCCEE------------------EEEE--E-EEEecCCCCceEEEeec-CCCCCCc
Confidence 459999999988887 489999999988 4431 1 11111122222333333 5999998
Q ss_pred CCCcCccceeeeeeCCcccCc
Q psy12789 191 APSITNYDFSEFIKGGKINQK 211 (514)
Q Consensus 191 ~~~~~~~~~~~~i~~g~~~~~ 211 (514)
+|+|++..+...+++.
T Consensus 128 -----p~qyfa~dC~~~f~~~ 143 (238)
T smart00136 128 -----PWQYFSSDCRRTFGRP 143 (238)
T ss_pred -----EeeeeecchhhhcCCC
Confidence 8999888777666554
No 36
>KOG1218|consensus
Probab=93.58 E-value=0.65 Score=47.27 Aligned_cols=45 Identities=36% Similarity=0.922 Sum_probs=19.8
Q ss_pred CCceecCCCCCccccCCCC--CC--CCCCCCCeeeccCCceeeecCCCccc
Q psy12789 368 EGTCHCQSGWKGIGCQEAG--CP--NACNRHGTCAFENEEYQCVCAEGWAG 414 (514)
Q Consensus 368 ~~~C~C~~Gy~G~~C~~~~--C~--~~C~~~G~C~~~~Gsy~C~C~~Gy~G 414 (514)
++.|.|.+||.|..|.... |. ..|.+++.|....+ .|.+.+++.+
T Consensus 161 ~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~~~--~~~~~~~~~~ 209 (316)
T KOG1218|consen 161 NGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRSTG--SCLCYPGPSG 209 (316)
T ss_pred CCceeccCCcccccccccCCCcCCCcccCCCCeeecccc--ccccCCCCcc
Confidence 3455555555555554321 32 23444445544333 3444444433
No 37
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=93.46 E-value=0.022 Score=54.31 Aligned_cols=116 Identities=29% Similarity=0.743 Sum_probs=67.9
Q ss_pred CcEEe----CCeEecCCCCcC---CCCCCC-CCC------CCCCCCCee---------cCceeecCCCCC--CCCCCCCC
Q psy12789 298 HGSCY----LGKCDCIDGYEG---TDCSKS-VCP------VLCSNHGKY---------GGGICHCENGWK--GPECDIPA 352 (514)
Q Consensus 298 ~G~C~----~g~C~C~~Gf~G---~~Ce~~-~C~------~~C~~~G~c---------~~~~C~C~~G~~--G~~Ce~~i 352 (514)
+|... .+.|.|.+||.- +.|+.. .|. ..|...+.| ..+.|.|-.||. ...|- .
T Consensus 10 NG~LiQMSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCv--p 87 (197)
T PF06247_consen 10 NGYLIQMSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCV--P 87 (197)
T ss_dssp TEEEEEESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEE--E
T ss_pred CCEEEEccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEc--h
Confidence 45554 268999999963 345431 232 234444444 467899999996 34452 2
Q ss_pred CCCCCCCCCCCceeeC-------CceecCCCCC---ccccC---CCCCCCCCCCCCeeeccCCceeeecCCCcccCC
Q psy12789 353 SDCQYSDCSGHGSCVE-------GTCHCQSGWK---GIGCQ---EAGCPNACNRHGTCAFENEEYQCVCAEGWAGVD 416 (514)
Q Consensus 353 ~eC~~~~C~~~G~C~~-------~~C~C~~Gy~---G~~C~---~~~C~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~ 416 (514)
..|....|. .|.|+- ..|.|.-|+. +..|. ...|...|..+-.|....+-|.|.|.+|+.|..
T Consensus 88 ~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~LKCk~nE~CK~~~~~Y~C~~~~~~~~~~ 163 (197)
T PF06247_consen 88 NKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSLKCKENEECKLVDGYYKCVCKEGFPGDG 163 (197)
T ss_dssp GGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE--------TTTEEEEEETTEEEEEE-TT-EEET
T ss_pred hhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceeeecCCCcceeeeCcEEEeecCCCCCCCC
Confidence 456666775 789962 2899999987 33465 356888898889999999999999999997643
No 38
>KOG1218|consensus
Probab=92.84 E-value=0.48 Score=48.20 Aligned_cols=80 Identities=30% Similarity=0.759 Sum_probs=54.0
Q ss_pred EEeCC--eEecCCCCcCCCCCC-----CCCCCCC--CCCCeecCceeecCCCCCCCCCCCCCCCCCC-CCCCCCceeeCC
Q psy12789 300 SCYLG--KCDCIDGYEGTDCSK-----SVCPVLC--SNHGKYGGGICHCENGWKGPECDIPASDCQY-SDCSGHGSCVEG 369 (514)
Q Consensus 300 ~C~~g--~C~C~~Gf~G~~Ce~-----~~C~~~C--~~~G~c~~~~C~C~~G~~G~~Ce~~i~eC~~-~~C~~~G~C~~~ 369 (514)
+|.+. .|.|..+|.+..|.. ..|...| ........+.|.|.+||.|..|......|.. ..|.+++.|...
T Consensus 118 ~C~~~~~~c~~~~~~~~~~C~~~~~~g~~C~~~c~~~~~~~~~~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~ 197 (316)
T KOG1218|consen 118 TCANPRRECRCGGGYIGEQCGEENLVGLKCQRDCQCTGGCDCKNGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRS 197 (316)
T ss_pred ccCCCccceecCCcCccccccccCCCCCCccCCCCCccccCCCCCceeccCCcccccccccCCCcCCCcccCCCCeeecc
Confidence 56543 488999999888865 1255555 2223346788999999999999755444543 356666788763
Q ss_pred --ceecCCCCCc
Q psy12789 370 --TCHCQSGWKG 379 (514)
Q Consensus 370 --~C~C~~Gy~G 379 (514)
.+.+.+++.+
T Consensus 198 ~~~~~~~~~~~~ 209 (316)
T KOG1218|consen 198 TGSCLCYPGPSG 209 (316)
T ss_pred ccccccCCCCcc
Confidence 6777777766
No 39
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=92.74 E-value=0.14 Score=34.74 Aligned_cols=31 Identities=32% Similarity=1.023 Sum_probs=21.7
Q ss_pred CCCCCC-CCCCCCceeeCC----ceecCCCCCcccc
Q psy12789 352 ASDCQY-SDCSGHGSCVEG----TCHCQSGWKGIGC 382 (514)
Q Consensus 352 i~eC~~-~~C~~~G~C~~~----~C~C~~Gy~G~~C 382 (514)
+++|.. .+|.+++.|.+. .|.|++||.|..|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence 345654 567777788752 6888888888766
No 40
>smart00051 DSL delta serrate ligand.
Probab=91.53 E-value=0.23 Score=39.37 Aligned_cols=22 Identities=45% Similarity=0.960 Sum_probs=12.6
Q ss_pred CCCceeeC-CceecCCCCCcccc
Q psy12789 361 SGHGSCVE-GTCHCQSGWKGIGC 382 (514)
Q Consensus 361 ~~~G~C~~-~~C~C~~Gy~G~~C 382 (514)
.++..|.. +.|.|.+||+|..|
T Consensus 41 ~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 41 FGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred cCCccCCcCCCEecCCCCcCCCC
Confidence 44455542 45667777766655
No 41
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=88.83 E-value=0.53 Score=31.25 Aligned_cols=26 Identities=38% Similarity=0.991 Sum_probs=17.5
Q ss_pred CCCCCCCceeeC----CceecCCCCCcc-cc
Q psy12789 357 YSDCSGHGSCVE----GTCHCQSGWKGI-GC 382 (514)
Q Consensus 357 ~~~C~~~G~C~~----~~C~C~~Gy~G~-~C 382 (514)
..+|.+++.|.+ +.|.|+.||.|. .|
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence 345666677765 278888888776 44
No 42
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=88.82 E-value=0.47 Score=35.57 Aligned_cols=16 Identities=31% Similarity=0.962 Sum_probs=12.1
Q ss_pred CCeEecCCCCcCCCCC
Q psy12789 303 LGKCDCIDGYEGTDCS 318 (514)
Q Consensus 303 ~g~C~C~~Gf~G~~Ce 318 (514)
+|+|.|.+|+.|..|+
T Consensus 18 ~G~C~C~~~~~G~~C~ 33 (50)
T cd00055 18 TGQCECKPNTTGRRCD 33 (50)
T ss_pred CCEEeCCCcCCCCCCC
Confidence 4777788888887776
No 43
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=87.87 E-value=0.43 Score=30.63 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=6.4
Q ss_pred ceeecCCCCC
Q psy12789 335 GICHCENGWK 344 (514)
Q Consensus 335 ~~C~C~~G~~ 344 (514)
|.|.|++||.
T Consensus 2 y~C~C~~Gy~ 11 (24)
T PF12662_consen 2 YTCSCPPGYQ 11 (24)
T ss_pred EEeeCCCCCc
Confidence 5666666664
No 44
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=85.71 E-value=1.2 Score=32.88 Aligned_cols=19 Identities=32% Similarity=1.003 Sum_probs=13.9
Q ss_pred EEe--CCeEecCCCCcCCCCC
Q psy12789 300 SCY--LGKCDCIDGYEGTDCS 318 (514)
Q Consensus 300 ~C~--~g~C~C~~Gf~G~~Ce 318 (514)
.|. +|+|.|+++++|..|+
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~ 32 (46)
T smart00180 12 TCDPDTGQCECKPNVTGRRCD 32 (46)
T ss_pred cccCCCCEEECCCCCCCCCCC
Confidence 454 4778888888888776
No 45
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=85.52 E-value=0.42 Score=35.52 Aligned_cols=20 Identities=35% Similarity=0.979 Sum_probs=14.6
Q ss_pred EEe--CCeEecCCCCcCCCCCC
Q psy12789 300 SCY--LGKCDCIDGYEGTDCSK 319 (514)
Q Consensus 300 ~C~--~g~C~C~~Gf~G~~Ce~ 319 (514)
.|. +|+|.|.++|+|..|+.
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 12 TCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SEEETCEEESBSTTEESTTS-E
T ss_pred cccCCCCEEeccccccCCcCcC
Confidence 665 57888888888888863
No 46
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=85.40 E-value=0.43 Score=34.41 Aligned_cols=28 Identities=29% Similarity=0.970 Sum_probs=21.9
Q ss_pred CCCCCCCC--CCCCCceeeC----CceecCCCCC
Q psy12789 351 PASDCQYS--DCSGHGSCVE----GTCHCQSGWK 378 (514)
Q Consensus 351 ~i~eC~~~--~C~~~G~C~~----~~C~C~~Gy~ 378 (514)
|++||... .|..++.|++ +.|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 36777544 5888899997 3899999997
No 47
>smart00181 EGF Epidermal growth factor-like domain.
Probab=83.61 E-value=1.4 Score=29.72 Aligned_cols=24 Identities=38% Similarity=1.064 Sum_probs=14.6
Q ss_pred CCCCCCceeeC----CceecCCCCCc-ccc
Q psy12789 358 SDCSGHGSCVE----GTCHCQSGWKG-IGC 382 (514)
Q Consensus 358 ~~C~~~G~C~~----~~C~C~~Gy~G-~~C 382 (514)
.+|.++ .|++ ..|.|++||.| ..|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence 345555 6654 26777777777 544
No 48
>PHA02887 EGF-like protein; Provisional
Probab=81.25 E-value=1.4 Score=39.10 Aligned_cols=26 Identities=31% Similarity=0.900 Sum_probs=17.4
Q ss_pred CCeeeccC--CceeeecCCCcccCCCCc
Q psy12789 394 HGTCAFEN--EEYQCVCAEGWAGVDCNI 419 (514)
Q Consensus 394 ~G~C~~~~--Gsy~C~C~~Gy~G~~Ce~ 419 (514)
||+|.... ....|.|+.||+|..|+.
T Consensus 96 HG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 96 NGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred CCEEEccccCCCceeECCCCcccCCCCc
Confidence 45665332 346788888888888874
No 49
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=81.10 E-value=1.1 Score=31.60 Aligned_cols=20 Identities=25% Similarity=0.698 Sum_probs=16.5
Q ss_pred CeeeccCCceeeecCCCccc
Q psy12789 395 GTCAFENEEYQCVCAEGWAG 414 (514)
Q Consensus 395 G~C~~~~Gsy~C~C~~Gy~G 414 (514)
-.|++.+++|+|.|++||.-
T Consensus 10 h~C~~~~g~~~C~C~~Gy~L 29 (36)
T PF14670_consen 10 HICVNTPGSYRCSCPPGYKL 29 (36)
T ss_dssp SEEEEETTSEEEE-STTEEE
T ss_pred CCCccCCCceEeECCCCCEE
Confidence 37899999999999999963
No 50
>KOG3512|consensus
Probab=80.24 E-value=3.1 Score=45.13 Aligned_cols=53 Identities=26% Similarity=0.572 Sum_probs=34.3
Q ss_pred ceee--CCceecCCCCCccccCC------------CCC---C----CCCCCCCeeeccCCceeeecCCCcccCCCCcc
Q psy12789 364 GSCV--EGTCHCQSGWKGIGCQE------------AGC---P----NACNRHGTCAFENEEYQCVCAEGWAGVDCNIK 420 (514)
Q Consensus 364 G~C~--~~~C~C~~Gy~G~~C~~------------~~C---~----~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~Ce~~ 420 (514)
-+|. .++|.|.+|-+|..|.. ..| + ..++++++ ...+.|.|..++.|..++..
T Consensus 407 ktCNq~tGqCpCkeGvtG~tCnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve----~qd~~s~Ck~~~~~~r~n~k 480 (592)
T KOG3512|consen 407 KTCNQTTGQCPCKEGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVE----PQDQCSKCKASPGGKRLNQK 480 (592)
T ss_pred ccccccCCcccCCCCCcccccccccchhhcccCCCcCceecCCCCccccCCCCc----chhccccCCCCCcceecccc
Confidence 3565 36899999999988842 122 1 23555544 23357889999988887754
No 51
>PHA02887 EGF-like protein; Provisional
Probab=78.70 E-value=1.7 Score=38.66 Aligned_cols=31 Identities=35% Similarity=0.905 Sum_probs=19.9
Q ss_pred cCCCCCC----CCCCcEEe------CCeEecCCCCcCCCCCC
Q psy12789 288 SSTCPNG----CSGHGSCY------LGKCDCIDGYEGTDCSK 319 (514)
Q Consensus 288 ~~~Cp~~----C~~~G~C~------~g~C~C~~Gf~G~~Ce~ 319 (514)
..+|+.. |- ||.|. ...|.|+.||+|..|+.
T Consensus 83 f~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 83 FEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred ccccChHhhCEee-CCEEEccccCCCceeECCCCcccCCCCc
Confidence 4566543 54 67775 25778888888777763
No 52
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=77.04 E-value=1.3 Score=31.07 Aligned_cols=23 Identities=39% Similarity=0.989 Sum_probs=16.8
Q ss_pred CCCCCCcEEe----CCeEecCCCCcCC
Q psy12789 293 NGCSGHGSCY----LGKCDCIDGYEGT 315 (514)
Q Consensus 293 ~~C~~~G~C~----~g~C~C~~Gf~G~ 315 (514)
..|+.++.|. .+.|.|.+||.|+
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccC
Confidence 3588889998 3689999999875
No 53
>KOG3607|consensus
Probab=76.84 E-value=2 Score=49.48 Aligned_cols=34 Identities=44% Similarity=0.941 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCeeeccCCceeeecCCCcccCCCCccc
Q psy12789 385 AGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKL 421 (514)
Q Consensus 385 ~~C~~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~Ce~~~ 421 (514)
..|+..|+++|.|.+.. .|.|.+||.+++|+...
T Consensus 626 ~~~~~~C~g~GVCnn~~---~ChC~~gwapp~C~~~~ 659 (716)
T KOG3607|consen 626 SCCPTTCNGHGVCNNEL---NCHCEPGWAPPFCFIFG 659 (716)
T ss_pred cccccccCCCcccCCCc---ceeeCCCCCCCcccccc
Confidence 34667799999998764 89999999999998763
No 54
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=76.16 E-value=2 Score=37.41 Aligned_cols=32 Identities=34% Similarity=0.970 Sum_probs=22.5
Q ss_pred CCCCCCCeeeccC-----CceeeecCC-------------CcccCCCCcc
Q psy12789 389 NACNRHGTCAFEN-----EEYQCVCAE-------------GWAGVDCNIK 420 (514)
Q Consensus 389 ~~C~~~G~C~~~~-----Gsy~C~C~~-------------Gy~G~~Ce~~ 420 (514)
+.|++||.|.... .=|.|.|.+ .|.|..|+..
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKk 62 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKK 62 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccc
Confidence 5688888887662 347888877 5777777653
No 55
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=75.38 E-value=2.6 Score=31.52 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=16.5
Q ss_pred eeeccCCceeeecCCCcccCCCCc
Q psy12789 396 TCAFENEEYQCVCAEGWAGVDCNI 419 (514)
Q Consensus 396 ~C~~~~Gsy~C~C~~Gy~G~~Ce~ 419 (514)
.|....| +|.|.+||+|..|+.
T Consensus 13 ~C~~~~G--~C~C~~~~~G~~C~~ 34 (50)
T cd00055 13 QCDPGTG--QCECKPNTTGRRCDR 34 (50)
T ss_pred cccCCCC--EEeCCCcCCCCCCCC
Confidence 3654444 899999999999973
No 56
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=75.35 E-value=1.9 Score=31.89 Aligned_cols=23 Identities=39% Similarity=0.826 Sum_probs=17.5
Q ss_pred CeeeccCCceeeecCCCcccCCCCc
Q psy12789 395 GTCAFENEEYQCVCAEGWAGVDCNI 419 (514)
Q Consensus 395 G~C~~~~Gsy~C~C~~Gy~G~~Ce~ 419 (514)
..|....| +|.|.++|+|..|+.
T Consensus 11 ~~C~~~~G--~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 11 QTCDPSTG--QCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SSEEETCE--EESBSTTEESTTS-E
T ss_pred CcccCCCC--EEeccccccCCcCcC
Confidence 36776444 899999999999985
No 57
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=73.86 E-value=0.53 Score=47.08 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=19.4
Q ss_pred cceecceeccccceeeEEeeecCCCCce
Q psy12789 112 FQFWNSDFNIEQSAFFRFNFDLPRGSNF 139 (514)
Q Consensus 112 ~~fW~~~~~~~~p~~~~fn~tl~~~a~~ 139 (514)
.++|+|+....-+++-.+||||..++.|
T Consensus 69 ~TwWQS~~~~~g~~~~~VtitLdL~~~f 96 (237)
T PF00055_consen 69 STWWQSETLQNGVQYENVTITLDLGKEF 96 (237)
T ss_dssp ---EEB--STTTTSTT-EEEEEEEEEEE
T ss_pred CceecCCccCCCCcCcceEEEEcccceE
Confidence 7999999877777777999999999988
No 58
>KOG3514|consensus
Probab=73.14 E-value=1.6 Score=51.35 Aligned_cols=30 Identities=40% Similarity=0.996 Sum_probs=24.8
Q ss_pred CC-CCCCCCCcEEeC----CeEec-CCCCcCCCCCC
Q psy12789 290 TC-PNGCSGHGSCYL----GKCDC-IDGYEGTDCSK 319 (514)
Q Consensus 290 ~C-p~~C~~~G~C~~----g~C~C-~~Gf~G~~Ce~ 319 (514)
.| +++|.++|.|.. +.|.| ..||.|..|+.
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~Cer 660 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCER 660 (1591)
T ss_pred ccCCCcccCCCCccccccccccccccCcccCccccc
Confidence 45 578999999984 58999 56899999985
No 59
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=72.41 E-value=2.8 Score=37.84 Aligned_cols=30 Identities=27% Similarity=0.843 Sum_probs=22.9
Q ss_pred CCCCCCeeeccC--CceeeecCCCcccCCCCcc
Q psy12789 390 ACNRHGTCAFEN--EEYQCVCAEGWAGVDCNIK 420 (514)
Q Consensus 390 ~C~~~G~C~~~~--Gsy~C~C~~Gy~G~~Ce~~ 420 (514)
-|-+ |+|.... ..+.|.|..||+|..|+..
T Consensus 52 YClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh~ 83 (139)
T PHA03099 52 YCLH-GDCIHARDIDGMYCRCSHGYTGIRCQHV 83 (139)
T ss_pred EeEC-CEEEeeccCCCceeECCCCcccccccce
Confidence 4644 5886543 5689999999999999864
No 60
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=70.34 E-value=2.5 Score=32.53 Aligned_cols=32 Identities=25% Similarity=0.733 Sum_probs=18.3
Q ss_pred CCCCCCeeecc----CCceeeecCCCcccCCCCccc
Q psy12789 390 ACNRHGTCAFE----NEEYQCVCAEGWAGVDCNIKL 421 (514)
Q Consensus 390 ~C~~~G~C~~~----~Gsy~C~C~~Gy~G~~Ce~~~ 421 (514)
.|++||+.... .|.-.|.|..-|.|++|+..+
T Consensus 18 ~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~~ 53 (56)
T PF04863_consen 18 SCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTLI 53 (56)
T ss_dssp --TTSEE--TTS-EETTEE--EE-TTEESTTS-EE-
T ss_pred CcCCCCeeeeccccccCCccccccCCcCCCCcccCC
Confidence 58888877532 466789999999999998764
No 61
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=69.44 E-value=1.5 Score=34.73 Aligned_cols=44 Identities=34% Similarity=0.824 Sum_probs=16.4
Q ss_pred ceecCCCCCccccCCCCC-C-CCCCCCCeeeccCCceeeecCCCcccCCC
Q psy12789 370 TCHCQSGWKGIGCQEAGC-P-NACNRHGTCAFENEEYQCVCAEGWAGVDC 417 (514)
Q Consensus 370 ~C~C~~Gy~G~~C~~~~C-~-~~C~~~G~C~~~~Gsy~C~C~~Gy~G~~C 417 (514)
+-.|.+.|.|..|+. .| + ..-.++-+|.. .| .=.|.+||+|+.|
T Consensus 18 rv~C~~nyyG~~C~~-~C~~~~d~~ghy~Cd~-~G--~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 18 RVVCDENYYGPNCSK-FCKPRDDSFGHYTCDS-NG--NKVCLPGWTGPNC 63 (63)
T ss_dssp -----TTEETTTT-E-E---EEETTEEEEE-S-S----EEE-TTEESTTS
T ss_pred EEECCCCCCCccccC-CcCCCcCCcCCcccCC-CC--CCCCCCCCcCCCC
Confidence 445666666666653 12 1 11123345542 23 4456677777665
No 62
>KOG3516|consensus
Probab=68.81 E-value=3.7 Score=49.01 Aligned_cols=43 Identities=30% Similarity=0.977 Sum_probs=35.0
Q ss_pred CCC-CCCCCCCCeeeccCCceeeecC-CCcccCCCCcccc-CCCCC
Q psy12789 385 AGC-PNACNRHGTCAFENEEYQCVCA-EGWAGVDCNIKLE-MSCND 427 (514)
Q Consensus 385 ~~C-~~~C~~~G~C~~~~Gsy~C~C~-~Gy~G~~Ce~~~~-~~C~d 427 (514)
+.| |++|.++|.|......|.|.|. .||.|..|...+- .+|..
T Consensus 546 drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~e~SCea 591 (1306)
T KOG3516|consen 546 DRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIYELSCEA 591 (1306)
T ss_pred cccCCccccCCCcccccccceeEeccccccccccccCCCcchhhHH
Confidence 456 7999999999998888999997 8999999987653 34543
No 63
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=67.90 E-value=13 Score=27.66 Aligned_cols=19 Identities=42% Similarity=1.225 Sum_probs=13.4
Q ss_pred CCCCceeeCCceecCCCCC
Q psy12789 360 CSGHGSCVEGTCHCQSGWK 378 (514)
Q Consensus 360 C~~~G~C~~~~C~C~~Gy~ 378 (514)
|..+..|+++.|.|++||.
T Consensus 28 C~~~s~C~~g~C~C~~g~~ 46 (52)
T PF01683_consen 28 CIGGSVCVNGRCQCPPGYV 46 (52)
T ss_pred CCCcCEEcCCEeECCCCCE
Confidence 4466777777777777764
No 64
>KOG3607|consensus
Probab=66.63 E-value=3.8 Score=47.33 Aligned_cols=51 Identities=35% Similarity=0.840 Sum_probs=31.7
Q ss_pred CCCCcEEeCCeEecCCCCcCCCCCCCCCCCCCCCCCee-cCceeecCCCCCCCCCCC
Q psy12789 295 CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKY-GGGICHCENGWKGPECDI 350 (514)
Q Consensus 295 C~~~G~C~~g~C~C~~Gf~G~~Ce~~~C~~~C~~~G~c-~~~~C~C~~G~~G~~Ce~ 350 (514)
|..+-.|.+.+|.=.. ..+..| |+..|..+|.| ..+.|.|.+||.++.|+.
T Consensus 606 Cg~~~vC~~~~C~~~~-v~~~~~----~~~~C~g~GVCnn~~~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 606 CGPGMICINHRCLSAS-VLNSSC----CPTTCNGHGVCNNELNCHCEPGWAPPFCFI 657 (716)
T ss_pred cCCCceecCCcchhhh-hhcccc----cccccCCCcccCCCcceeeCCCCCCCcccc
Confidence 6666677776664333 333332 33447777777 356778888888777764
No 65
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=63.79 E-value=6.5 Score=38.38 Aligned_cols=20 Identities=35% Similarity=0.791 Sum_probs=17.6
Q ss_pred CeeeccCCceeeecCCCccc
Q psy12789 395 GTCAFENEEYQCVCAEGWAG 414 (514)
Q Consensus 395 G~C~~~~Gsy~C~C~~Gy~G 414 (514)
..|.+..|+|.|.|.+||+.
T Consensus 199 ~~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 199 QVCISTPGSYLCACTEGYAL 218 (224)
T ss_pred ceEEcCCCCEEeECCCCccC
Confidence 36899999999999999975
No 66
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=63.25 E-value=5.5 Score=36.00 Aligned_cols=16 Identities=38% Similarity=0.999 Sum_probs=11.9
Q ss_pred CeEecCCCCcCCCCCC
Q psy12789 304 GKCDCIDGYEGTDCSK 319 (514)
Q Consensus 304 g~C~C~~Gf~G~~Ce~ 319 (514)
..|.|..||+|..|+.
T Consensus 67 ~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 67 MYCRCSHGYTGIRCQH 82 (139)
T ss_pred ceeECCCCcccccccc
Confidence 5678888888877764
No 67
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=61.89 E-value=2.4 Score=33.60 Aligned_cols=13 Identities=38% Similarity=1.096 Sum_probs=5.8
Q ss_pred ceecCCCCCcccc
Q psy12789 370 TCHCQSGWKGIGC 382 (514)
Q Consensus 370 ~C~C~~Gy~G~~C 382 (514)
.-.|.+||+|+.|
T Consensus 51 ~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 51 NKVCLPGWTGPNC 63 (63)
T ss_dssp -EEE-TTEESTTS
T ss_pred CCCCCCCCcCCCC
Confidence 4455555555544
No 68
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=61.29 E-value=5.7 Score=34.70 Aligned_cols=20 Identities=50% Similarity=1.007 Sum_probs=14.7
Q ss_pred CCCCCCcEEeC---------CeEecCCCC
Q psy12789 293 NGCSGHGSCYL---------GKCDCIDGY 312 (514)
Q Consensus 293 ~~C~~~G~C~~---------g~C~C~~Gf 312 (514)
+.|++||.|+. +.|.|.+.+
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~ 41 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTV 41 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccc
Confidence 57999999983 357777643
No 69
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=60.57 E-value=1.5 Score=42.09 Aligned_cols=116 Identities=23% Similarity=0.600 Sum_probs=66.7
Q ss_pred cCceeecCCCCC---CCCCCCCCCCCC-----CCCCCCCceeeC---------CceecCCCCC--ccccCCCCCCC-CCC
Q psy12789 333 GGGICHCENGWK---GPECDIPASDCQ-----YSDCSGHGSCVE---------GTCHCQSGWK--GIGCQEAGCPN-ACN 392 (514)
Q Consensus 333 ~~~~C~C~~G~~---G~~Ce~~i~eC~-----~~~C~~~G~C~~---------~~C~C~~Gy~--G~~C~~~~C~~-~C~ 392 (514)
+.+.|.|.+||. -..|+. ..+|. ..+|...+.|++ ..|.|.+||. ...|-...|.+ .|.
T Consensus 18 NHfEC~Cnegfvl~~EntCE~-kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCvp~~C~~~~Cg 96 (197)
T PF06247_consen 18 NHFECKCNEGFVLKNENTCEE-KVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCVPNKCNNKDCG 96 (197)
T ss_dssp SEEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEEEGGGSS---T
T ss_pred CceEEEcCCCcEEcccccccc-ceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEchhhcCceecC
Confidence 568999999996 456753 33553 237888899974 2799999996 44566666753 575
Q ss_pred CCCeeeccC---CceeeecCCCcc---cCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCeEecCCCc-eeecCCCCc
Q psy12789 393 RHGTCAFEN---EEYQCVCAEGWA---GVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHI-MCLASNDPV 465 (514)
Q Consensus 393 ~~G~C~~~~---Gsy~C~C~~Gy~---G~~Ce~~~~~~C~d~~~~d~~g~~eC~d~~C~~~~~C~n~~g~-~C~~~~~p~ 465 (514)
.|.|+..+ ....|.|.-|+. ...|...-+ +.|+ ..|-.+..|....+. .|.+-....
T Consensus 97 -~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~--------------T~C~-LKCk~nE~CK~~~~~Y~C~~~~~~~ 160 (197)
T PF06247_consen 97 -SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGE--------------TKCS-LKCKENEECKLVDGYYKCVCKEGFP 160 (197)
T ss_dssp -TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE-----------------------TTTEEEEEETTEEEEEE-TT-E
T ss_pred -CCeEEecCCCCCCceeEeeeceEeccCCcccCCCc--------------ccee-eecCCCcceeeeCcEEEeecCCCCC
Confidence 79997553 345999999987 223433322 3333 236666778887765 477655443
No 70
>KOG3514|consensus
Probab=56.28 E-value=6.6 Score=46.50 Aligned_cols=36 Identities=28% Similarity=0.772 Sum_probs=31.0
Q ss_pred CC-CCCCCCCCeeeccCCceeeec-CCCcccCCCCccc
Q psy12789 386 GC-PNACNRHGTCAFENEEYQCVC-AEGWAGVDCNIKL 421 (514)
Q Consensus 386 ~C-~~~C~~~G~C~~~~Gsy~C~C-~~Gy~G~~Ce~~~ 421 (514)
.| +++|.|+|.|...-+.|.|.| ..||.|+.|+...
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE~ 662 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCEREA 662 (1591)
T ss_pred ccCCCcccCCCCccccccccccccccCcccCcccccee
Confidence 46 589999999998888999999 5699999998653
No 71
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=54.20 E-value=13 Score=27.31 Aligned_cols=22 Identities=32% Similarity=0.745 Sum_probs=16.2
Q ss_pred eeeccCCceeeecCCCcccCCCCc
Q psy12789 396 TCAFENEEYQCVCAEGWAGVDCNI 419 (514)
Q Consensus 396 ~C~~~~Gsy~C~C~~Gy~G~~Ce~ 419 (514)
.|....| +|.|.++|+|..|+.
T Consensus 12 ~C~~~~G--~C~C~~~~~G~~C~~ 33 (46)
T smart00180 12 TCDPDTG--QCECKPNVTGRRCDR 33 (46)
T ss_pred cccCCCC--EEECCCCCCCCCCCc
Confidence 4554434 899999999998873
No 72
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=48.32 E-value=14 Score=27.62 Aligned_cols=21 Identities=38% Similarity=1.015 Sum_probs=18.1
Q ss_pred CCCCCCcEEeCCeEecCCCCc
Q psy12789 293 NGCSGHGSCYLGKCDCIDGYE 313 (514)
Q Consensus 293 ~~C~~~G~C~~g~C~C~~Gf~ 313 (514)
..|..+..|..+.|.|++||.
T Consensus 26 ~qC~~~s~C~~g~C~C~~g~~ 46 (52)
T PF01683_consen 26 EQCIGGSVCVNGRCQCPPGYV 46 (52)
T ss_pred CCCCCcCEEcCCEeECCCCCE
Confidence 357788999999999999985
No 73
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=48.00 E-value=15 Score=25.65 Aligned_cols=26 Identities=35% Similarity=0.990 Sum_probs=16.8
Q ss_pred cCCCCCCCCCCCCCeeeccCCceeeecCCCccc
Q psy12789 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAG 414 (514)
Q Consensus 382 C~~~~C~~~C~~~G~C~~~~Gsy~C~C~~Gy~G 414 (514)
|....|+..|..+. .+.|.|++||.-
T Consensus 3 Cn~t~CpA~CDpn~-------~~~C~CPeGyIl 28 (34)
T PF09064_consen 3 CNQTECPADCDPNS-------PGQCFCPEGYIL 28 (34)
T ss_pred cccccCCCccCCCC-------CCceeCCCceEe
Confidence 55556766665421 248999999963
No 74
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=47.90 E-value=89 Score=26.92 Aligned_cols=22 Identities=36% Similarity=0.915 Sum_probs=17.8
Q ss_pred CCCCCCcEEeC---CeEecCCCCcC
Q psy12789 293 NGCSGHGSCYL---GKCDCIDGYEG 314 (514)
Q Consensus 293 ~~C~~~G~C~~---g~C~C~~Gf~G 314 (514)
..|+.+|.|.. ..|.|.+||.-
T Consensus 84 ~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 84 GFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cccCCccEeCCCCCCceECCCCcCC
Confidence 56999999973 47999999974
No 75
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=46.84 E-value=19 Score=31.18 Aligned_cols=26 Identities=31% Similarity=0.958 Sum_probs=16.2
Q ss_pred CCCC-CCCCCCCceeeC---CceecCCCCC
Q psy12789 353 SDCQ-YSDCSGHGSCVE---GTCHCQSGWK 378 (514)
Q Consensus 353 ~eC~-~~~C~~~G~C~~---~~C~C~~Gy~ 378 (514)
+.|. ...|...|.|.. ..|.|.+||.
T Consensus 78 d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSNNSPKCSCLPGFE 107 (110)
T ss_pred cCCCCccccCCccEeCCCCCCceECCCCcC
Confidence 3443 346777777753 2677777775
No 76
>KOG3516|consensus
Probab=46.77 E-value=15 Score=44.15 Aligned_cols=33 Identities=24% Similarity=0.680 Sum_probs=28.9
Q ss_pred CCCCCCCeeeccCCceeeec-CCCcccCCCCccc
Q psy12789 389 NACNRHGTCAFENEEYQCVC-AEGWAGVDCNIKL 421 (514)
Q Consensus 389 ~~C~~~G~C~~~~Gsy~C~C-~~Gy~G~~Ce~~~ 421 (514)
.+|.|+|+|+..-.+|.|.| ...|.|+.|...+
T Consensus 961 ~~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~ei 994 (1306)
T KOG3516|consen 961 YPCLNGGHCVERYDGYTCDCSRTAYDGPFCSKEI 994 (1306)
T ss_pred ccccCCCEEEEecCceeeccccCcCCCCcccccc
Confidence 57999999999988999999 4589999998664
No 77
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=42.49 E-value=8.4 Score=29.75 Aligned_cols=26 Identities=50% Similarity=1.193 Sum_probs=13.5
Q ss_pred CCCCCcEEe-C-----C--eEecCCCCcCCCCCC
Q psy12789 294 GCSGHGSCY-L-----G--KCDCIDGYEGTDCSK 319 (514)
Q Consensus 294 ~C~~~G~C~-~-----g--~C~C~~Gf~G~~Ce~ 319 (514)
.|++||... . | .|+|..-|.|++|+.
T Consensus 18 ~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~ 51 (56)
T PF04863_consen 18 SCSGHGRAFLDGLIADGSPVCECNSCYGGPDCST 51 (56)
T ss_dssp --TTSEE--TTS-EETTEE--EE-TTEESTTS-E
T ss_pred CcCCCCeeeeccccccCCccccccCCcCCCCccc
Confidence 588888876 2 2 688888888888863
No 78
>KOG0196|consensus
Probab=39.06 E-value=45 Score=39.06 Aligned_cols=19 Identities=53% Similarity=1.235 Sum_probs=15.3
Q ss_pred CCCCcEEe--CCeEecCCCCc
Q psy12789 295 CSGHGSCY--LGKCDCIDGYE 313 (514)
Q Consensus 295 C~~~G~C~--~g~C~C~~Gf~ 313 (514)
|++.|.-. .|.|.|.+||.
T Consensus 248 C~~dGeWlvpiG~C~C~aGye 268 (996)
T KOG0196|consen 248 CSGDGEWLVPIGGCVCKAGYE 268 (996)
T ss_pred EcCCCcEEEEcCceeecCCCC
Confidence 77767665 58999999996
No 79
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=37.69 E-value=21 Score=25.41 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=18.3
Q ss_pred CCCCCCCeeeccC-CceeeecCCCccc
Q psy12789 389 NACNRHGTCAFEN-EEYQCVCAEGWAG 414 (514)
Q Consensus 389 ~~C~~~G~C~~~~-Gsy~C~C~~Gy~G 414 (514)
..|..++.|.+.. |.+.|.|..||..
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~ 31 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKK 31 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCccc
Confidence 4577788898776 8999999999963
No 80
>KOG4680|consensus
Probab=28.64 E-value=63 Score=29.82 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=35.0
Q ss_pred Cceeeeccccceeeeee----CCccee-cceec---cccceeeEEeeecCCCCce
Q psy12789 93 PSVVELKDFNSLISATI----PSFQFW-NSDFN---IEQSAFFRFNFDLPRGSNF 139 (514)
Q Consensus 93 ~~~~~~~~~~~~~~~~i----pp~~fW-~~~~~---~~~p~~~~fn~tl~~~a~~ 139 (514)
.=.||.++|+.+|+|++ |||.|- -+..+ .++=.=|+|-+.++.|+.+
T Consensus 96 sCPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTCisfsf~i~~g~~v 150 (153)
T KOG4680|consen 96 SCPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTCISFSFDIGFGSSV 150 (153)
T ss_pred cCCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEEEEEEEEeecccee
Confidence 44699999999999986 688884 23333 3556678899998888765
No 81
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=22.12 E-value=1.2e+02 Score=28.18 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=32.2
Q ss_pred eeeeeeCCcceecceecccccee------eEEeeecCCCCceeEeeccC
Q psy12789 104 LISATIPSFQFWNSDFNIEQSAF------FRFNFDLPRGSNFAVYGRRN 146 (514)
Q Consensus 104 ~~~~~ipp~~fW~~~~~~~~p~~------~~fn~tl~~~a~~~vygrr~ 146 (514)
.+.-.|-|..||+.++..+.=.| +...|.+|++|-+|+|.|-|
T Consensus 56 ~ivlnI~~~a~~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~aiya~e~ 104 (155)
T PF04386_consen 56 QIVLNISPHAVRDLSVDNDAISFTARFGGVPESIYVPFSAVLAIYAREN 104 (155)
T ss_dssp EEEEEESSSSEEEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEEETTT
T ss_pred cEEEEECcCCcCCcEEECCEEEEEEEECCEEEEEEEhHHhhheeecccC
Confidence 44556889999999988876433 22357899999999999875
No 82
>PF05629 Nanovirus_C8: Nanovirus component 8 (C8) protein; InterPro: IPR008706 This family consists of a group of 17.4 kDa nanovirus proteins which are highly related to the Faba bean necrotic yellows virus component 8 protein whose function is unknown [].
Probab=20.57 E-value=48 Score=30.00 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=25.4
Q ss_pred CCceEEecc-----CCceeeeeccCCCccchhhhe
Q psy12789 7 QPHIMCLAS-----NDPVEVLLRKQPPSVTASFYQ 36 (514)
Q Consensus 7 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 36 (514)
|.-|||.-| |+|-.||||.---+.+.|||-
T Consensus 26 ~Q~~~C~DS~~gkl~~pRKVLL~S~~v~FnGSF~G 60 (153)
T PF05629_consen 26 QQEFTCCDSMKGKLKDPRKVLLVSCSVSFNGSFYG 60 (153)
T ss_pred eeEEEeeeccCCccCCCceEEEEEEEEEecceeec
Confidence 456888776 899999999998999999985
No 83
>KOG1388|consensus
Probab=20.42 E-value=95 Score=30.68 Aligned_cols=68 Identities=38% Similarity=0.954 Sum_probs=37.8
Q ss_pred CCCCcEEeC-CeE-ecCCCCcCCCCCCCCCCCCCCCCCeecCceeecCCCCCCCCCCCCCCCCCCCCCCCCc-eee--CC
Q psy12789 295 CSGHGSCYL-GKC-DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHG-SCV--EG 369 (514)
Q Consensus 295 C~~~G~C~~-g~C-~C~~Gf~G~~Ce~~~C~~~C~~~G~c~~~~C~C~~G~~G~~Ce~~i~eC~~~~C~~~G-~C~--~~ 369 (514)
|.+++.|.+ -.| .|..|-+|..|++ |..||.|.. ..-.|++..|.+++ .|+ .+
T Consensus 54 cNGh~~c~t~~v~~~~~N~~~g~~c~k-------------------c~~g~~Gdt---N~g~c~~~~~~g~~~~~~~~~~ 111 (217)
T KOG1388|consen 54 CNGHSDCNTQHVCWRCENGTTGAHCEK-------------------CIVGFYGDT---NGGKCQPCDCNGGASACVTLTG 111 (217)
T ss_pred hcCCCCcccceeeeeccCccccccCCc-------------------eEEEEEecC---CCCccCHhhhcCCeeeeeccCC
Confidence 556666653 233 3556666666553 667777741 12234443444332 232 25
Q ss_pred ceec-CCCCCccccCC
Q psy12789 370 TCHC-QSGWKGIGCQE 384 (514)
Q Consensus 370 ~C~C-~~Gy~G~~C~~ 384 (514)
+|.| ..|..|+.|..
T Consensus 112 ~c~c~~kgvvgd~c~~ 127 (217)
T KOG1388|consen 112 KCFCTTKGVVGDLCPK 127 (217)
T ss_pred ccccccceEecccCcc
Confidence 8888 56888888864
Done!