RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12789
(514 letters)
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 128 bits (324), Expect = 1e-33
Identities = 48/140 (34%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 291 CPNGCSGHGSCY-LGKCDCIDGYEGTDCSKSVCPVLCSNHGK-YGGGICHCENGWKGPEC 348
C C G C G C C G+ G +C K+ C C N G + G C C G +G +C
Sbjct: 183 CTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQC 242
Query: 349 DIPASDCQYSDCSGHGSCV-EGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCV 407
+I C C G C+ + C C G++G C + C C HGTC +E +C
Sbjct: 243 EIS--KCP-QPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTC---HEPNKCQ 296
Query: 408 CAEGWAGVDCNIKLEMSCND 427
C EGW G CN + E S
Sbjct: 297 CQEGWHGRHCNKRYEASLIG 316
Score = 98.4 bits (245), Expect = 8e-23
Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 281 IKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCE 340
I V+ S C+ +G V ++ ++ G + +
Sbjct: 82 IMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAF-EVDVIVMNSEG--NTILKTPQ 138
Query: 341 NGWKGPECDIPASDCQYSDCSGHGSCVE-GTCHCQSGWKGIGCQEAGCPNACNRHGTCAF 399
N C +C C G C E C C G+ G C++A C C G C
Sbjct: 139 NAIFFKTCQQA--EC-PGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLC-- 193
Query: 400 ENEEYQCVCAEGWAGVDCNI 419
C+C G+ GV+C+
Sbjct: 194 -VTPGFCICPPGFYGVNCDK 212
Score = 77.2 bits (190), Expect = 1e-15
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 291 CPNGCSGHGSCY-LGKCDCIDGYEGTDCSKSVCPVLCSNHGK-YGGGICHCENGWKGPEC 348
CP C G C KC C GY+G CSK VC C HG + C C+ GW G C
Sbjct: 247 CPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHC 306
Query: 349 DIPASDCQYSDCSGHG 364
+ H
Sbjct: 307 NKRYEASLIGTKHHHH 322
Score = 44.1 bits (104), Expect = 6e-05
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 290 TCPNGCSGHGSCY-LGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGG 334
C GC HG+C+ KC C +G+ G C+K L +
Sbjct: 278 VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 125 bits (314), Expect = 1e-30
Identities = 39/175 (22%), Positives = 57/175 (32%), Gaps = 26/175 (14%)
Query: 286 GVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCP--------VLCSNHGKYGGGIC 337
CSGHG C G C C + G C+ + +LCS GK G C
Sbjct: 527 SCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSC 586
Query: 338 HC-ENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGT 396
C + G G C+ + C C+ C C+ +G E C C
Sbjct: 587 VCIQPGSYGDTCEKCPT-CP-DACTFKKEC----VECKKFDRGALHDENTCNRYCRDEIE 640
Query: 397 CAFENEEYQCVCAEGWAGVDCNIKLEMSCND-----DTDNDKDGVTDCSDSDCCS 446
+ + G V+C K E C + + K + + +CC
Sbjct: 641 S------VKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECCK 689
Score = 89.8 bits (222), Expect = 4e-19
Identities = 40/187 (21%), Positives = 55/187 (29%), Gaps = 50/187 (26%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGP 346
V+ C C C + +G + G+C C GW G
Sbjct: 429 VTFDCDCACQAQAEP--NSHRC-----------------NNGNGTFECGVCRCGPGWLGS 469
Query: 347 ECDIPASDCQYS------------DCSGHGSCVEGTCHCQSGWKGIGCQEA--------- 385
+C+ D + S CS G C+ G C C S G +
Sbjct: 470 QCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCV 529
Query: 386 -GCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDC 444
C+ HG C C+C W G CN + DT +G+ CS
Sbjct: 530 RYKGEMCSGHGQC----SCGDCLCDSDWTGYYCNC----TTRTDTCMSSNGLL-CSGRGK 580
Query: 445 CSQPVCS 451
C C
Sbjct: 581 CECGSCV 587
Score = 72.0 bits (176), Expect = 2e-13
Identities = 31/190 (16%), Positives = 50/190 (26%), Gaps = 31/190 (16%)
Query: 285 EGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWK 344
E +S + C + G C+ G S S+ + + G+K
Sbjct: 364 EELSLSFNATCLNNEVI-PGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFK 422
Query: 345 GP-----------ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNR 393
C A + +G+G+ G C C GW G C+ + ++
Sbjct: 423 DSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQ 482
Query: 394 HGTCAFENEEY-----------QCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDS 442
C+ + QCVC G + D
Sbjct: 483 QDECSPREGQPVCSQRGECLCGQCVCHSSDFGKI--------TGKYCECDDFSCVRYKGE 534
Query: 443 DCCSQPVCSD 452
C CS
Sbjct: 535 MCSGHGQCSC 544
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 107 bits (268), Expect = 2e-27
Identities = 44/135 (32%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 291 CPNGCSGHGSC-YLGKCDCIDGYEGTDCSKSVCPVLCSNHGKY--GGGICHCENGWKGPE 347
+ HGS C D Y G C+K P G C GW GPE
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62
Query: 348 CDIPASDCQYSDCSGHGSCVE-GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQC 406
C+ C+ HGSC G C CQ GW+G+ C + C HG C NE +QC
Sbjct: 63 CNRA--ICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCV-HGIC---NEPWQC 116
Query: 407 VCAEGWAGVDCNIKL 421
+C W G C+ L
Sbjct: 117 LCETNWGGQLCDKDL 131
Score = 102 bits (256), Expect = 1e-25
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 290 TCPNGCSGHGSCYL-GKCDCIDGYEGTDCSKSVCPVLCS-NHGK-YGGGICHCENGWKGP 346
+ GH +C G C++G+ G +C++++C CS HG G C C+ GW+G
Sbjct: 35 RPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGL 94
Query: 347 ECDIPASDCQYSDCSGHGSCVEG-TCHCQSGWKGIGCQ----EAGCPNACNRHGTCAFEN 401
CD HG C E C C++ W G C G C GTC+
Sbjct: 95 YCDKCIPHP----GCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTG 150
Query: 402 E-EYQCVCAEGWAGVDCNI 419
+YQC C EG++G +C I
Sbjct: 151 PDKYQCSCPEGYSGPNCEI 169
Score = 78.9 bits (195), Expect = 2e-17
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 322 CPVLCSNHGK-YGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVE-GTCHCQSGWKG 379
+HG G C++ + G C+ D GH +C + G C GW G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPR--DDFFGHYACDQNGNKTCMEGWMG 60
Query: 380 IGCQEAGCPNACNR-HGTCAFENEEYQCVCAEGWAGVDCNIKLEMSC 425
C A C C+ HG+C C C GW G+ C+ +
Sbjct: 61 PECNRAICRQGCSPKHGSC---KLPGDCRCQYGWQGLYCDKCIPHPG 104
Score = 58.1 bits (141), Expect = 3e-10
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 355 CQYSDCSGHGSCV-EGTCHCQSGWKGIGC-QEAGCPNACNRHGTCAFENEEYQCVCAEGW 412
HGS C + G GC + + H C ++ C EGW
Sbjct: 2 RGSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYAC---DQNGNKTCMEGW 58
Query: 413 AGVDCNI 419
G +CN
Sbjct: 59 MGPECNR 65
Score = 38.1 bits (89), Expect = 0.002
Identities = 10/68 (14%), Positives = 15/68 (22%), Gaps = 21/68 (30%)
Query: 387 CPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCS 446
+ + HG+ C + + G CN C D
Sbjct: 3 GSHHHHHHGSI---EGRSAVTCDDYYYGFGCN------------------KFCRPRDDFF 41
Query: 447 QPVCSDQP 454
DQ
Sbjct: 42 GHYACDQN 49
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 110 bits (277), Expect = 6e-26
Identities = 37/176 (21%), Positives = 57/176 (32%), Gaps = 25/176 (14%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCP--------VLCSNHGKYGGGICHC 339
+ G G G C+ GKC C G+EG+ C V CS G+ +C C
Sbjct: 522 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCEC 581
Query: 340 ENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEA----GCPNACNRHG 395
+G++ P C S C + SC E + G G C A N +
Sbjct: 582 HSGYQLPLCQE--CPGCPSPCGKYISCAE-CLKFEKGPFGKNCSAACPGLQLSNNPVKGR 638
Query: 396 TCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDS-DCCSQPVC 450
TC + C + + ++ +C D C + +
Sbjct: 639 TCKERDS---EGCWVAYTLEQQDGM---DRYLIYVDES---RECVAGPDGCGENLY 685
Score = 101 bits (252), Expect = 8e-23
Identities = 36/164 (21%), Positives = 48/164 (29%), Gaps = 39/164 (23%)
Query: 291 CPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVC----------------PVLCSNHGKYGG 334
+ C G G G C C GY G +C ++CS G
Sbjct: 433 DRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC 492
Query: 335 GICHCENG------WKGPECDIPASDCQYSD-----CSGHGSCVEGTCHCQSGWKGIGCQ 383
G C C G C+ +C+ + G G C G C C G++G CQ
Sbjct: 493 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 552
Query: 384 EAGCP--------NACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
C+ G C C C G+ C
Sbjct: 553 CERTTEGCLNPRRVECSGRGRC----RCNVCECHSGYQLPLCQE 592
Score = 87.5 bits (216), Expect = 2e-18
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 286 GVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKS-VCPVLCSNHGKYGGGICHCENGWK 344
G + CSG G C C+C GY+ C + CP C + E G
Sbjct: 559 GCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAEC-LKFEKGPF 617
Query: 345 GPECDIPASDCQYSD-CSGHGSCVE-GTCHCQSGWKGIGCQEAGCPNA-CNRHGTC 397
G C Q S+ +C E + C + + C
Sbjct: 618 GKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESREC 673
Score = 70.5 bits (172), Expect = 5e-13
Identities = 28/180 (15%), Positives = 42/180 (23%), Gaps = 25/180 (13%)
Query: 287 VSSTCPNGCSG----HGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENG 342
S C NG + G C + + ++ + G
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 343 WKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ----------------EAG 386
EC S C G G G C C +G+ G C+ +
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN 479
Query: 387 CPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCS 446
C+ G C QC+C C+ +G C
Sbjct: 480 NSIICSGLGDC----VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNG-QVCGGPGRGL 534
Score = 38.5 bits (89), Expect = 0.006
Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 9/102 (8%)
Query: 358 SDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTC--------AFENEEYQCVCA 409
+ V C +G C E+ + A
Sbjct: 349 HNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRA 408
Query: 410 EGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCS 451
G+ + +++ C + + C +C
Sbjct: 409 LGFTDIVT-VQVLPQCECRCRDQSRDRSLCHGKGFLECGICR 449
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 90.5 bits (224), Expect = 8e-20
Identities = 40/192 (20%), Positives = 61/192 (31%), Gaps = 35/192 (18%)
Query: 286 GVSSTCPNGCSGHGSCYLGKC--DCIDGYEGTDCSKSVCPVLCSNHGK--YGGGICHCEN 341
GV S G + S + C G +C+ C N+G G C C
Sbjct: 165 GVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTA--CMNNGVCHEDTGECICPP 222
Query: 342 GWKGPECDIPASDCQY-----------SDCSGHGSCVE--GTCHCQSGWKGIGCQEA--- 385
G+ G C+ + C + C+ C C +GWKG+ C EA
Sbjct: 223 GFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHP 282
Query: 386 -------GCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTD 438
+CN C + C+C+ GW G+ C + + D
Sbjct: 283 GFYGPDCKLRCSCNNGEMC---DRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDH--- 336
Query: 439 CSDSDCCSQPVC 450
+ P+C
Sbjct: 337 IEVNSGKFNPIC 348
Score = 50.9 bits (121), Expect = 5e-07
Identities = 35/217 (16%), Positives = 62/217 (28%), Gaps = 39/217 (17%)
Query: 237 LSKRSDQTTETNFVEVQILKFLMSGKWFLSVY-NDDVKTHEIKLLIKEAEGVSSTCPNGC 295
+ + ++++ + ++V D+V K+LIKE + V NG
Sbjct: 81 EGRVRGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKEEDAV--IYKNGS 138
Query: 296 SGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDC 355
H + + D E P + G + +
Sbjct: 139 FIHSVP---RHEVPDILEVHLPH--AQPQDAGVYSARYIGGNLFTSAFTRLIV------- 186
Query: 356 QYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGV 415
C++ G C AC +G C + +C+C G+ G
Sbjct: 187 ---------------RRCEAQKWGPECNH--LCTACMNNGVC--HEDTGECICPPGFMGR 227
Query: 416 DCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSD 452
C E +C T + CS + C V
Sbjct: 228 TC----EKACELHTFG-RTCKERCSGQEGCKSYVFCL 259
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 82.4 bits (203), Expect = 4e-18
Identities = 29/125 (23%), Positives = 38/125 (30%), Gaps = 27/125 (21%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCS----------------KSVCPVLCSNHGK 331
S + C G G G C C GY G +C K ++CS G
Sbjct: 91 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGD 150
Query: 332 YGGGICHCENGWKGPEC-----------DIPASDCQYSDCSGHGSCVEGTCHCQSGWKGI 380
G C C + + + Q G G C G C C G++G
Sbjct: 151 CVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS 210
Query: 381 GCQEA 385
CQ
Sbjct: 211 ACQHH 215
Score = 78.9 bits (194), Expect = 6e-17
Identities = 31/141 (21%), Positives = 41/141 (29%), Gaps = 37/141 (26%)
Query: 304 GKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPAS---------- 353
+C+C + D S C G GIC C+ G+ G C+
Sbjct: 82 PQCECRCRDQSRDRSL------CHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGS 135
Query: 354 ---DCQYSDCSGHGSCVEGTCHCQSGWKGIGC--------------QEAGCPNACNRHGT 396
D CSG G CV G C C + + G G
Sbjct: 136 CRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGL 195
Query: 397 CAFENEEYQCVCAEGWAGVDC 417
C +C C G+ G C
Sbjct: 196 C----FCGKCRCHPGFEGSAC 212
Score = 56.2 bits (135), Expect = 3e-09
Identities = 21/113 (18%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ----------------EAGCPNA 390
EC S C G G G C C +G+ G C+ +
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII 144
Query: 391 CNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSD 443
C+ G C QC+C C+ +G C
Sbjct: 145 CSGLGDC----VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNG-QVCGGPG 192
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 69.3 bits (169), Expect = 5e-14
Identities = 33/168 (19%), Positives = 51/168 (30%), Gaps = 29/168 (17%)
Query: 286 GVSSTCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGW 343
G + CPN CS +G C +G C G + C S + C
Sbjct: 7 GSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQC------ 60
Query: 344 KGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFE--- 400
CS +G C G +C +G +G C+ + C
Sbjct: 61 ----------------CSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCC 104
Query: 401 NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQP 448
++ C + G C D G C+++ CCS+
Sbjct: 105 SQWGFCGLGSEFCGGGCQS--GACSTDKPCGKDAGGRVCTNNYCCSKW 150
Score = 57.3 bits (138), Expect = 5e-10
Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKG 345
+TC N CS +G C G C G +G C + + +C + G+ G
Sbjct: 52 GATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCG 111
Query: 346 PECDIPASDCQYSDCSGHGSCVE----------------GTCHCQSGWKGIGCQEAGCP 388
+ CQ CS C + G+C G+ G GCQ GC
Sbjct: 112 LGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCD 170
Score = 43.9 bits (103), Expect = 2e-05
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 353 SDCQYSD------CSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFEN---EE 403
+ CS +G C G +C G + C + + TC +
Sbjct: 5 EQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQY 64
Query: 404 YQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQP 448
C + G C D + G C ++ CCSQ
Sbjct: 65 GYCGFGAEYCGAGCQGGP--CRADIKCGSQAGGKLCPNNLCCSQW 107
Score = 31.9 bits (72), Expect = 0.24
Identities = 13/88 (14%), Positives = 17/88 (19%), Gaps = 20/88 (22%)
Query: 291 CPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDI 350
+G C C G+ C C + C G C
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGF--CGLGSEFCGGGCQSGACSTDKPCGK--DAGGRVCTN 143
Query: 351 PA----------------SDCQYSDCSG 362
+ CQ C G
Sbjct: 144 NYCCSKWGSCGIGPGYCGAGCQSGGCDG 171
Score = 29.2 bits (65), Expect = 2.4
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSD 441
C E G C + C+ C + G C + G C++
Sbjct: 3 CGEQGSNMECPNNLCCSQYGY---CGMGGDYCGKGCQN--GACWTSKRCGSQAGGATCTN 57
Query: 442 SDCCSQP 448
+ CCSQ
Sbjct: 58 NQCCSQY 64
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 66.5 bits (163), Expect = 2e-13
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 328 NHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
++ + + + C+ S C G C +G TC C G++G C+
Sbjct: 18 SYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Query: 384 EA---GC-PNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCND 427
C + + C E C CA G+ D +C
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADN----GKACIP 121
Score = 58.1 bits (141), Expect = 2e-10
Identities = 22/122 (18%), Positives = 32/122 (26%), Gaps = 15/122 (12%)
Query: 291 CPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVL---CSNHG----KYGGGICHCENGW 343
C + D E + K C N G G C C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 344 KGPECDIPASD-CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA--GC-PNACNRHG 395
+G C++ C + C E C C G+ +A P C +
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQT 131
Query: 396 TC 397
Sbjct: 132 LE 133
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 68.2 bits (167), Expect = 2e-13
Identities = 28/178 (15%), Positives = 41/178 (23%), Gaps = 30/178 (16%)
Query: 292 PNGCSGHGSCYLGKCDCIDGYEGTDCSKSVC---PVLCSNHG----KYGGGICHCENGWK 344
CS + D E + K C N G G C C G++
Sbjct: 14 EETCS-YEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Query: 345 GPECDIPASD-CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA--GC-PNACNRHGT 396
G C++ C + C E C C G+ +A P C +
Sbjct: 73 GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL 132
Query: 397 CAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQP 454
+ Q + G A D + D
Sbjct: 133 ERRKRSVAQATSSSGEAPDSI-------TWKPYD-------AADLDPTENPFDLLDFN 176
Score = 62.8 bits (153), Expect = 1e-11
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 316 DCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEG----TC 371
+C + C ++ + + + C+ S C G C +G TC
Sbjct: 11 ECMEETC-----SYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTC 65
Query: 372 HCQSGWKGIGCQ----EAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCND 427
C G++G C+ + + + C E C CA G+ D +C
Sbjct: 66 TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADN----GKACIP 121
Score = 45.9 bits (109), Expect = 6e-06
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 354 DCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGC---PNACNRHGTCAFENEEYQCVCAE 410
+C CS + E + + G + C G C EY C C E
Sbjct: 11 ECMEETCS-YEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 411 GWAGVDCNIKLEMSCNDD 428
G+ G +C + C+ D
Sbjct: 70 GFEGKNCELFTRKLCSLD 87
Score = 35.9 bits (83), Expect = 0.014
Identities = 12/91 (13%), Positives = 17/91 (18%), Gaps = 12/91 (13%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVL---CSNHG----KYGGGICH 338
C + C C GY D K+ P C K
Sbjct: 86 LDNGDCDQFCHEEQNSV--VCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQAT 143
Query: 339 CENGWK-GPECDIPASDCQYSDCSGHGSCVE 368
+G P ++
Sbjct: 144 SSSGEAPDSITWKPYDAADLDPTENPFDLLD 174
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 64.9 bits (159), Expect = 6e-13
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 316 DCSKSVCPVLCSNHG----KYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEG-- 369
+CS P C + G G C C G+ GP C+I ++C + C +C++
Sbjct: 7 ECSLGANP--CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG 64
Query: 370 --TCHCQSGWKGIGCQEAG--C-PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
C C G++G+ C+ C + C +G C + E+QC C G+ G C +
Sbjct: 65 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 62.2 bits (152), Expect = 5e-12
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 281 IKEAEGVSSTCPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSV--C-PVLCSNHG--- 330
+ E ++ C + G C +C C+ GY G C V C C N
Sbjct: 5 VDECSLGANPCEHA----GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCL 60
Query: 331 -KYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
+ G C C G++G C++ +C S C +G C++ C C +G+ G CQ
Sbjct: 61 DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 48.4 bits (116), Expect = 3e-07
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA--GC-PNACNRHGTCAF 399
EC + A+ C+++ G C+ C C G+ G C+ C N C TC
Sbjct: 7 ECSLGANPCEHA-----GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 400 ENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQ 453
+ E+QC+C G+ GV C + +C+ S C C D+
Sbjct: 62 QIGEFQCICMPGYEGVHCEVN---------------TDECASSPCLHNGRCLDK 100
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 62.8 bits (153), Expect = 5e-12
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEAG--CP-N 389
+ E + + + C+ + C G C + C CQ G++G C+ N
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 390 ACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCND 427
+ + + C C G+ + SC
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPD----QKSCKP 126
Score = 58.1 bits (141), Expect = 2e-10
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 14/106 (13%)
Query: 306 CDCIDGYEGTDCSKSVCPVL---CSNHG----KYGGGICHCENGWKGPECDIPASDCQYS 358
+ E C N G C C+ G++G C++ A+ +
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 359 DCSGHGSCVEG----TCHCQSGWKGIGCQ---EAGCPNACNRHGTC 397
C C +G++ Q + P C R
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVS 138
Score = 43.1 bits (102), Expect = 3e-05
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 11/92 (11%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSV--CPVLCSNHG-----KYGGGICH 338
+ C NG C + Y +C C G+EG +C +C
Sbjct: 53 PNPCLNGGLCKDDINSY--ECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCS 110
Query: 339 CENGWKGPECDIPASDCQYSDCSGHGSCVEGT 370
C G++ C T
Sbjct: 111 CTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPT 142
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 62.7 bits (151), Expect = 1e-10
Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 15/151 (9%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDC-SKSVCPVLCSNHGKYGGGICHCENGWKGP 346
CS + + D + + S + + + W
Sbjct: 470 CLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAI- 528
Query: 347 ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCP----------NACNRHGT 396
++ D CSGHG CV+G+C C W G+ C E A +
Sbjct: 529 -DNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNW 587
Query: 397 CAFENEEYQCVCAEGWAGVDCNIKLEMSCND 427
+ VC G + C+
Sbjct: 588 LTVSGGKLSTVC--GAVASGLALHFSGGCSR 616
Score = 57.3 bits (137), Expect = 7e-09
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 262 KWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSV 321
+W D +T I + + C + CSGHG C G C C + + G C +
Sbjct: 513 RWHQPAPFDKQQTWAI-----DNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPE 567
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTC 371
+ + W ++ C G
Sbjct: 568 TSLPTQLKDNFNR--APSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCS 615
Score = 57.0 bits (136), Expect = 8e-09
Identities = 33/171 (19%), Positives = 50/171 (29%), Gaps = 14/171 (8%)
Query: 293 NGCSGHGSCYLGKCDC-IDG---YEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPEC 348
CS SCY + + +D + V CS + + N W
Sbjct: 440 ASCSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITL 499
Query: 349 DIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGC-QEAGCPNACNRHGTCAFENEEYQCV 407
+P+ S + Q W GC + C+ HG C + CV
Sbjct: 500 PLPSY--TRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCV 553
Query: 408 CAEGWAGVDCNIK---LEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPH 455
C E W G+ C+ L D+ + + S VC
Sbjct: 554 CDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVAS 604
Score = 36.2 bits (82), Expect = 0.028
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 322 CPVLCSNHGKY-GGGICHCENGWKGPECDIPASDCQY 357
C +C HG G C C+ G+ GP C I + +
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDF 224
Score = 35.0 bits (79), Expect = 0.069
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 262 KWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCY-LGKCDCIDGYEGTDCS 318
+W+ Y + + + + C C GHGSC KC C GY G C
Sbjct: 162 RWYQGFYPAGSQPVTWAI---DNVYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCK 216
Score = 32.3 bits (72), Expect = 0.41
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 386 GCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
C C HG+C +C+C G++G C I
Sbjct: 187 QCEEMCYGHGSC---INGTKCICDPGYSGPTCKI 217
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 60.3 bits (145), Expect = 3e-10
Identities = 30/149 (20%), Positives = 37/149 (24%), Gaps = 26/149 (17%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGK---YGGGICHCE--N 341
S C NG + G CD + V C G
Sbjct: 121 YDSFCSNGVTHRNQP-RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ 179
Query: 342 GWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ-----------EAGCPNA 390
EC S C G G G C C +G+ G C+ E C
Sbjct: 180 VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 239
Query: 391 -----CNRHGTCAFENEEYQCVCAEGWAG 414
C+ G C QC+C
Sbjct: 240 NNSIICSGLGDC----VCGQCLCHTSDVP 264
Score = 48.7 bits (115), Expect = 2e-06
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 17/88 (19%)
Query: 289 STCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVC----------------PVLCSNHGKY 332
S + C G G G C C GY G +C ++CS G
Sbjct: 192 SRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC 251
Query: 333 GGGICHCENGWKGPECDIPASDCQYSDC 360
G C C + I C++
Sbjct: 252 VCGQCLCHTSDVPGK-LIYGQYCEHHHH 278
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 57.0 bits (138), Expect = 5e-10
Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 26/125 (20%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA--GC-PN 389
E C S C GSC + C C ++G C+
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC 91
Query: 390 ACNRHGTCAF----ENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCC 445
G + + C C EG++ + +SC + C
Sbjct: 92 VNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD----GVSCT-----------PTVEYPCG 136
Query: 446 SQPVC 450
P+
Sbjct: 137 KIPIL 141
Score = 45.8 bits (109), Expect = 4e-06
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 18/94 (19%)
Query: 291 CPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSV------------CPVLCSNHGKYGG 334
+ C GSC C C+ +EG +C C CS+H
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG-TK 109
Query: 335 GICHCENGWKGPECDIPASDCQYSDCSGHGSCVE 368
C C G+ + + C G +E
Sbjct: 110 RSCRCHEGYSLLADGVSCTPTVEYPC-GKIPILE 142
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 55.9 bits (135), Expect = 6e-10
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 345 GPEC-DIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEAGCPNACNR-----H 394
G +C +P S C GHG+C++G +C C+SGW+G CQ C+
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 395 GTCAFENEEYQCVCAEGWAGVDCNIKLEMSCND 427
C E +C CA G+ D + C+
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDD----LLQCHP 94
Score = 45.9 bits (109), Expect = 2e-06
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 291 CPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSVCPVLCS--NHG-------KYGGGIC 337
C + C GHG+C G CDC G+EG C + V + CS N G + G C
Sbjct: 18 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRC 77
Query: 338 HCENGWKGPECDIPASDCQYSDCSGHGSCVE 368
C G+K + + C +E
Sbjct: 78 SCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 54.7 bits (132), Expect = 2e-09
Identities = 26/122 (21%), Positives = 33/122 (27%), Gaps = 26/122 (21%)
Query: 326 CSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGH------------GSCVEG---- 369
C G C C +G+ P C + G+C
Sbjct: 14 CLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYR 73
Query: 370 -------TCHCQSGWKGIGCQEA--GC-PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
C C G+ GI CQ C C G C Y C C + G +C
Sbjct: 74 GDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133
Query: 420 KL 421
K
Sbjct: 134 KG 135
Score = 33.2 bits (76), Expect = 0.074
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 388 PNACNRHGTC--AFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDC 444
PN C G C + + C C +G+ +C+ +E++ +++ C+ + C
Sbjct: 5 PNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAG---PCTPNPC 60
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 57.8 bits (139), Expect = 4e-09
Identities = 32/173 (18%), Positives = 43/173 (24%), Gaps = 29/173 (16%)
Query: 290 TCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECD 349
G G C +C G +C + P + + CE P
Sbjct: 334 FLATGNVSGGVC----DNCQHNTMGRNCEQC-KPFYFQHPERDIRDPNLCEPCTCDPAGS 388
Query: 350 IPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQE-------------AGC-PNACNRHG 395
C + G C C+ +G C GC ACN G
Sbjct: 389 ENGGICD-GYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLG 447
Query: 396 TCAFENEEY----QCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDC 444
T N C C G C+ C + + C DC
Sbjct: 448 TIPGGNPCDSETGYCYCKRLVTGQRCD-----QCLPQHWGLSNDLDGCRPCDC 495
Score = 56.2 bits (135), Expect = 1e-08
Identities = 30/165 (18%), Positives = 48/165 (29%), Gaps = 40/165 (24%)
Query: 291 CPNGCSGHGSCYLGKCD-CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECD 349
C+ C G++ +C G C C+ +G CD
Sbjct: 363 FYFQHPERDIRDPNLCEPCTCDPAGSENG-GICDGYTDFSVGLIAGQCRCKLHVEGERCD 421
Query: 350 I-----------PASDCQYSDCSGHGSCVE--------GTCHCQSGWKGIGCQE------ 384
+ C+ C+ G+ G C+C+ G C +
Sbjct: 422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHW 481
Query: 385 ------AGC-PNACNRHG----TCAFENEEYQCVCAEGWAGVDCN 418
GC P C+ G +C+ ++ QC C G CN
Sbjct: 482 GLSNDLDGCRPCDCDLGGALNNSCSEDS--GQCSCLPHMIGRQCN 524
Score = 47.4 bits (112), Expect = 9e-06
Identities = 28/135 (20%), Positives = 35/135 (25%), Gaps = 38/135 (28%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSK---------SVCPV-----LCSNHGKYG 333
C G+C C EG C + P C+ G
Sbjct: 391 GGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIP 450
Query: 334 G--------GICHCENGWKGPECD----------IPASDCQYSDCSGHGS----C--VEG 369
G G C+C+ G CD C+ DC G+ C G
Sbjct: 451 GGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSG 510
Query: 370 TCHCQSGWKGIGCQE 384
C C G C E
Sbjct: 511 QCSCLPHMIGRQCNE 525
Score = 39.7 bits (92), Expect = 0.002
Identities = 28/174 (16%), Positives = 45/174 (25%), Gaps = 42/174 (24%)
Query: 304 GKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECD-------------- 349
G C C G + + G C C + KG C+
Sbjct: 252 GNCFC----YGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPA 307
Query: 350 --IPASDCQYSDCSGHGSC--VEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEE-- 403
++ C+ +C+ H S + +G G C N C +H T E+
Sbjct: 308 EGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGV----CDN-C-QHNTMGRNCEQCK 361
Query: 404 ---YQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQP 454
+Q + C C D G + D +
Sbjct: 362 PFYFQHPERDIRDPNLCE-----PCTCDP----AGSENGGICDGYTDFSVGLIA 406
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 52.4 bits (126), Expect = 2e-08
Identities = 21/139 (15%), Positives = 32/139 (23%), Gaps = 21/139 (15%)
Query: 291 CPNGCSGHGSCY--LG--KCDCIDGYEGTDCSKS---VCPVLCSNHGKYGGGICHCENGW 343
C + +G C G C+C C G +
Sbjct: 7 CESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGAT 66
Query: 344 KGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ------EAGCPNACNRHGTC 397
+C S C+ C G+ I E ++G C
Sbjct: 67 LKSQCCSSLGAAWGSPCT-LCQV---DPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLC 122
Query: 398 AFENEE--YQCVCAEGWAG 414
N ++C C G
Sbjct: 123 --VNTRGSFKCQCPSGMTL 139
Score = 28.5 bits (64), Expect = 3.4
Identities = 18/95 (18%), Positives = 24/95 (25%), Gaps = 32/95 (33%)
Query: 290 TCPNGCSGHGSCYLG--KCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCE--NGWKG 345
G + C L C GY + CE +
Sbjct: 72 CSSLGAAWGSPCTLCQVDPICGKGYSRIKGT-------------------QCEDID---- 108
Query: 346 PECDIPASDCQYSDCS-GHGSCVEGTCHCQSGWKG 379
EC++ C+ C GS C C SG
Sbjct: 109 -ECEVFPGVCKNGLCVNTRGSF---KCQCPSGMTL 139
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 51.1 bits (122), Expect = 4e-07
Identities = 35/168 (20%), Positives = 50/168 (29%), Gaps = 24/168 (14%)
Query: 259 MSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGH---------GSCYLGKCDCI 309
+G + + K + K L G S +C SGH G Y+
Sbjct: 301 RNGNFLTLQQSPVTKQWQEKPLC---LGTSGSCRGYFSGHILGFGEDELGEVYI----LS 353
Query: 310 DGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEG 369
T + C + C+ C G
Sbjct: 354 SSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYC-----TPTG 408
Query: 370 TCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
C C GW+G C+ A C AC G C N +C+C +G+ G C
Sbjct: 409 KCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 40.0 bits (93), Expect = 0.002
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 284 AEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGK-YGGGICHCENG 342
A+ ++S C C GKC C G+EG C + C C + G C C+ G
Sbjct: 388 AQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG 447
Query: 343 WKGPECD 349
+ GP+C+
Sbjct: 448 YLGPQCE 454
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 49.1 bits (116), Expect = 5e-07
Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 7/87 (8%)
Query: 306 CDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGS 365
C+ +G + V+ S G C G
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSE------GNTILXTPQNAIFFKTCQQAECPGGCRNGGF 160
Query: 366 CVE-GTCHCQSGWKGIGCQEAGCPNAC 391
C E C C G+ G C+ +
Sbjct: 161 CNERRICECPDGFHGPHCEGTKHHHHH 187
Score = 30.3 bits (67), Expect = 1.1
Identities = 13/90 (14%), Positives = 19/90 (21%), Gaps = 25/90 (27%)
Query: 353 SDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFE------------ 400
+ S V+ C G+ E + T
Sbjct: 89 NVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQ 148
Query: 401 -------------NEEYQCVCAEGWAGVDC 417
NE C C +G+ G C
Sbjct: 149 AECPGGCRNGGFCNERRICECPDGFHGPHC 178
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 50.4 bits (119), Expect = 7e-07
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 240 RSDQTTETNFVEVQILKFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHG 299
+ E + + I + L S K + + + +S CP+ CSGHG
Sbjct: 143 YTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHG 202
Query: 300 SCYLGKCDCIDGYEGTDCSK-----SVCPVLCSNHGKYGGGICHCENGWKGPECD 349
C G C C GY + + + GK G G C
Sbjct: 203 DCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCG 257
Score = 43.1 bits (100), Expect = 1e-04
Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 4/93 (4%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGT 396
G + + C CSGHG C+ G C C G+ C + H
Sbjct: 176 SQKNVPPFGLDGVYISEPCPS-YCSGHGDCISGVCFCDLGYTAAQG---TCVSNTPNHSE 231
Query: 397 CAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDT 429
E G + +
Sbjct: 232 MFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRS 264
Score = 41.6 bits (96), Expect = 4e-04
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTC--HCQSGWKG 379
CP CS HG G+C C+ G+ + ++ +S+ G G
Sbjct: 194 CPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVG 253
Query: 380 IGCQEAG 386
GC
Sbjct: 254 TGCGTLN 260
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/143 (13%), Positives = 32/143 (22%), Gaps = 10/143 (6%)
Query: 315 TDCSKSVCPVLCSNHGKYGGGICHCENG----WKGPECDIPASDCQYSDCSGHGSCVEGT 370
C + C + + G W IP S +
Sbjct: 118 EGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIP-RSLASSKTRFRWIQESSS 176
Query: 371 CHCQSGWKGIGC-QEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDT 429
+ G CP+ C+ HG C C C G+ + +
Sbjct: 177 QKNVPPFGLDGVYISEPCPSYCSGHGDCISG----VCFCDLGYTAAQGTCVSNTPNHSEM 232
Query: 430 DNDKDGVTDCSDSDCCSQPVCSD 452
+ +G V +
Sbjct: 233 FDRFEGKLSPLWYKITGGQVGTG 255
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 48.6 bits (116), Expect = 2e-06
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 9/103 (8%)
Query: 291 CPNG-CSGHGSCYLG----KCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKG 345
C + C +GSC C C GYEG++C + C + G C G +
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNE--CHPE-RTDGCQHFCLPGQES 64
Query: 346 PECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCP 388
C D + C + P
Sbjct: 65 YTCSCAQGYRLGEDHKQCVPHDQCAC-GVLTSEKRAPDLQDLP 106
Score = 47.4 bits (113), Expect = 5e-06
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA-----GCPNACNRHGTCAFENEEYQ 405
C C +GSC + TC C G++G C+ A +H C E Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF-CLPGQESYT 66
Query: 406 CVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDC 444
C CA+G+ + + + D
Sbjct: 67 CSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCS 446
C +G+C Y C C+ G+ G +C + + TD + +S CS
Sbjct: 10 SQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCS 68
Score = 41.2 bits (97), Expect = 5e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 325 LCSNHGK----YGGGICHCENGWKGPECDIPASDCQYSDCSG-HGSCVEG----TCHCQS 375
C ++G G C C G++G C++ ++C G C+ G TC C
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQ 71
Query: 376 GWKGIGCQEAGCPNACNRHGTCAFENEE 403
G++ + P+ G E
Sbjct: 72 GYRLGEDHKQCVPHDQCACGVLTSEKRA 99
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 49.1 bits (116), Expect = 2e-06
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 14/134 (10%)
Query: 295 CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHG-----KYGGGICHCENGWKGPECD 349
G ++ + + K C+ H C CE+ GP+C
Sbjct: 268 RPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG 327
Query: 350 IPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEAGC-PNACNRHGTCAFENEEY 404
+ Q S GS + C IG C GTC +
Sbjct: 328 KCKKNYQGRPWS-PGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTC---HNNV 383
Query: 405 QCVCAEGWAGVDCN 418
+C+C + G+ C
Sbjct: 384 RCLCPAAYTGILCE 397
Score = 40.2 bits (93), Expect = 0.001
Identities = 16/97 (16%), Positives = 23/97 (23%), Gaps = 17/97 (17%)
Query: 290 TCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVC-PVLCSNHGK-YGGGICHCENGWKGPE 347
+ G CI + + C N G + C C + G
Sbjct: 342 SYLPIPKGA------ANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGIL 395
Query: 348 CDIPASDCQYSDCSGHGSC--VEGTCHCQSGWKGIGC 382
C+ + C GSC G G
Sbjct: 396 CE----KLR---CEEAGSCGSDSGQGAPPHGTHHHHH 425
Score = 32.5 bits (73), Expect = 0.36
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 6/81 (7%)
Query: 371 CHCQSGWKGIGCQEAGCPNACNRHG-TCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDT 429
H + I + CN H C ++N + C C G DC C +
Sbjct: 279 LHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG-----KCKKNY 333
Query: 430 DNDKDGVTDCSDSDCCSQPVC 450
+ C
Sbjct: 334 QGRPWSPGSYLPIPKGAANAC 354
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar
binding protein; 1.80A {Phytolacca americana} SCOP:
g.3.1.1 g.3.1.1 g.3.1.1
Length = 126
Score = 45.6 bits (107), Expect = 3e-06
Identities = 27/121 (22%), Positives = 37/121 (30%), Gaps = 18/121 (14%)
Query: 294 GCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPAS 353
+ C G C GY GT ++ C C + + G + +
Sbjct: 6 VRASGRVCPDGYCCSQWGYCGT--TEEYCGKGCQS------QCDYNRCGKEFGGKECHDE 57
Query: 354 DCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWA 413
C CS +G C HC G GCQ C + E+ C GW
Sbjct: 58 LC----CSQYGWCGNSDGHC-----GEGCQSQCSYWRCGKDFGGRLCTEDM-CCSQYGWC 107
Query: 414 G 414
G
Sbjct: 108 G 108
Score = 40.2 bits (93), Expect = 2e-04
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 25/123 (20%)
Query: 326 CSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEA 385
++ G C + G+ G + CQ C + G C +
Sbjct: 7 RASGRVCPDGYCCSQWGYCGTTEEYCGKGCQ---------SQCDYNRCGKEFGGKECHDE 57
Query: 386 GCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCC 445
C C+++G C ++G G C C+ G C++ CC
Sbjct: 58 LC---CSQYG---------WCGNSDGHCGEGCQ----SQCSYWRCGKDFGGRLCTEDMCC 101
Query: 446 SQP 448
SQ
Sbjct: 102 SQY 104
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 46.2 bits (110), Expect = 4e-06
Identities = 20/132 (15%), Positives = 29/132 (21%), Gaps = 28/132 (21%)
Query: 305 KCDCIDGYEGTDCSKS---------VCPVLCSNHGKYGGGICHCENGWK--GPECDIPAS 353
CDC +E + G C E G C
Sbjct: 25 ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRG--DNGDTACSNEIGVGVSKASCCCSLG 82
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ-------EAGCPNACNRHGTCAFENE 402
+ C + C G++ E + G C N
Sbjct: 83 KAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKC--INT 140
Query: 403 E--YQCVCAEGW 412
+QC C G+
Sbjct: 141 FGSFQCRCPTGY 152
Score = 39.3 bits (92), Expect = 7e-04
Identities = 14/107 (13%), Positives = 23/107 (21%), Gaps = 20/107 (18%)
Query: 355 CQYSDCSGHGSCV--EG--TCHCQSGWKGIGCQEA---GCPNACNRHGTCAFENEEYQCV 407
C G+CV G C C ++ + C +N + C
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACS 65
Query: 408 CAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQP 454
G + C + C P +
Sbjct: 66 NEIGVGVSKAS------CCCSLG-------KAWGTPCEMCPAVNTSE 99
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/115 (15%), Positives = 27/115 (23%), Gaps = 15/115 (13%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCV--EG--TCHCQSGW 377
C N G IC C ++ + D + +C G C + G
Sbjct: 13 ISGNCVN--TPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGV 70
Query: 378 KGIG---CQEAG--CPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCND 427
C G C + C EG+ + D
Sbjct: 71 GVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITV----ILED 121
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 47.1 bits (111), Expect = 9e-06
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 360 CSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
C C+E C + + C + C+ +G C + E +CVC W G DCN
Sbjct: 425 CGPQMMCLEHRCLPVASFNFSTCLSSKEGTICSGNGVC---SNELKCVCNRHWIGSDCNT 481
Query: 420 K 420
Sbjct: 482 Y 482
Score = 46.7 bits (110), Expect = 1e-05
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 295 CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGK-YGGGICHCENGWKGPECDIP 351
C C +C + + + C S +CS +G C C W G +C+
Sbjct: 425 CGPQMMCLEHRCLPVASFNFSTCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDCNTY 482
Score = 36.7 bits (84), Expect = 0.017
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 326 CSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCV-EGTCHCQSGWKGIGCQE 384
C C + C S + + CSG+G C E C C W G C
Sbjct: 425 CGPQMMCLEHRCLPVASFNFSTC---LSSKEGTICSGNGVCSNELKCVCNRHWIGSDCNT 481
Query: 385 AG 386
Sbjct: 482 YF 483
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 68/249 (27%)
Query: 22 LLRKQPPSVTASFY-QRVKFLVEENSVQSYAHMDE---YSERYFNSISNVTAGVSSSGPI 77
++ P ++T F ++ K + E S + + + +E+ F I+ + +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 78 GV---TDFSQVPDSFEEAPSVVELKDFNSLISATIPSFQFWNSDFNI------------E 122
G+ T F+Q P++ L+ F+ S I E
Sbjct: 1724 GLLSATQFTQ--------PALT-------LMEKAA--FEDLKSKGLIPADATFAGHSLGE 1766
Query: 123 QSA-----------------FFR---FNFDLPRG----SNFAVYGRR--NVAPSITNYDF 156
+A F+R +PR SN+ + VA S +
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 157 SEFIKDNTRTSAFFRF--NFDLPRGSNFAVYG-RRNV--APSITNYDFSEFIKGGKINQK 211
++ + + + N+++ + G R + ++ N+ + I ++ +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVE-NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 212 RSVDSILGH 220
S++ + GH
Sbjct: 1886 LSLEEVEGH 1894
Score = 38.1 bits (88), Expect = 0.009
Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 93/298 (31%)
Query: 17 DPVEVLLRKQPPS----VTASFYQRVKFLVEENSVQSYAH-----MDEYSERYF--NSIS 65
+P E P+ + F V LVE + V + + E+ Y N I
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 66 NVTAGVSSSGPIGVTDFSQVPDSFEEAPSVVELKDFNSLISATIPSFQFWNSDFNIEQSA 125
+ A + + ++ ++ + I A P SA
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNY-----------ITARIMAKRPF-------DKKSNSA 144
Query: 126 FFRFNFDLPRGSN--FAVYG-------------------RRNVAPSITNYD--FSEFIKD 162
FR + G+ A++G V I SE I+
Sbjct: 145 LFR---AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 163 NTRTSAFFRFNFDL----------PRGSNFAVYGRRNVA-PSITNYDFSEFIKGGKI--- 208
F ++ P ++ P I + ++ K+
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGF 258
Query: 209 ---NQKRSVDSILGHDDGV---SFTSHISNQHHTLSKRSDQTTETNFVE--VQILKFL 258
+ + GH G+ + +D + +F + + L
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAE-----------TD--SWESFFVSVRKAITVL 303
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 40.9 bits (96), Expect = 7e-05
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 305 KCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHG 364
+ C D + + C C +G +P C C G
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPVLRSN-RVEYCWCNSGRAQCHS-VPVKSCSEPRCFNGG 60
Query: 365 SCVEG------TCHCQSGWKGIGCQ 383
+C + C C G+ G C+
Sbjct: 61 TCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 371 CHCQSGWKGIGCQEA-GC-PNACNRHGTC--AFENEEYQCVCAEGWAGVDCNI 419
C C SG C C GTC A ++ C C EG+AG C I
Sbjct: 34 CWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 35.5 bits (82), Expect = 0.005
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 305 KCDCIDGYEGT------DCSKSVCPV--LCSNHGKYGGGICHCENGWKGPECDIPAS 353
C C G CS+ C C + +C C G+ G C+I
Sbjct: 33 YCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 43.7 bits (102), Expect = 2e-04
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Query: 331 KYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNA 390
K +KG D+ ++ G E G
Sbjct: 138 KLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGV 197
Query: 391 CNRHGTCAFENEEYQCVCAE-GWAGVDCNIKLEMSC 425
C G C+ +++ C C+ G+ G DC+ E
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYI 233
Score = 33.7 bits (76), Expect = 0.17
Identities = 10/85 (11%), Positives = 21/85 (24%), Gaps = 1/85 (1%)
Query: 285 EGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCEN-GW 343
++ +G G + VC +C C G+
Sbjct: 161 SSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGF 220
Query: 344 KGPECDIPASDCQYSDCSGHGSCVE 368
+G +C + + C +
Sbjct: 221 RGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 30.6 bits (68), Expect = 1.7
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 341 NGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHC-QSGWKGIGCQEAGCPNACNR 393
NG C+ P++ CQ CS G C++ +C C + + G C + G ++
Sbjct: 1006 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 1063
Score = 29.8 bits (66), Expect = 3.0
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHCQ-SGWKGIGCQEAGCPNAC 391
G K A C + C +G C +G C C +G+ G C+ +
Sbjct: 604 VQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
Query: 392 NRHGTCAFENEEYQC 406
+ +
Sbjct: 664 DGSMFMKIQLPVVMH 678
Score = 28.7 bits (63), Expect = 6.2
Identities = 7/74 (9%), Positives = 11/74 (14%)
Query: 304 GKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGH 363
G C + C + +C C + D S
Sbjct: 609 GVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF 668
Query: 364 GSCVEGTCHCQSGW 377
Sbjct: 669 MKIQLPVVMHTEAE 682
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 43.0 bits (100), Expect = 2e-04
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 305 KCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQY 357
CDC ++ P G G+C C G G C+ + Y
Sbjct: 454 LCDC-----NCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLENLY 501
Score = 39.9 bits (92), Expect = 0.002
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 8/47 (17%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383
C C P+ C G G G C C G G C+
Sbjct: 455 CDCNCSDTQPQA----PHC----SDGQGHLQCGVCSCAPGRLGRLCE 493
Score = 32.6 bits (73), Expect = 0.33
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 13/54 (24%)
Query: 367 VEGTCHCQSGWKGIGCQEAG--CPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
+ C C C + P+ + G + C CA G G C
Sbjct: 451 LHTLCDCN-------CSDTQPQAPHCSDGQGHL----QCGVCSCAPGRLGRLCE 493
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 41.6 bits (96), Expect = 2e-04
Identities = 26/143 (18%), Positives = 37/143 (25%), Gaps = 18/143 (12%)
Query: 290 TCPNGCSGHGSCYLGKCD-CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPEC 348
C G + + C G C + + + + C C G+ E
Sbjct: 28 MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED 87
Query: 349 DIPASDCQYSDCSGHGSCVEG--------TCHCQSGWKGIGCQEAGC---------PNAC 391
CQY +C G C+ C C G E C
Sbjct: 88 TCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCN 147
Query: 392 NRHGTCAFENEEYQCVCAEGWAG 414
+ C Y C C EG+
Sbjct: 148 TDNEVCXNVEGVYXCQCMEGFTF 170
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 40.2 bits (94), Expect = 4e-04
Identities = 27/146 (18%), Positives = 37/146 (25%), Gaps = 51/146 (34%)
Query: 286 GVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDC----------------SKSVC-PVLCSN 328
G SS + C C G G C +C P C++
Sbjct: 5 GGSSCAIVPKTKEVVC----THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 329 HGKYG--------GGIC-HCENGWKGPECD-------------IPASDCQYSDCSGHGSC 366
+ G C C G CD PA C+ C+ +G+
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 367 VE--------GTCHCQSGWKGIGCQE 384
+ G C C G C
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGT 146
Score = 39.0 bits (91), Expect = 0.001
Identities = 25/136 (18%), Positives = 35/136 (25%), Gaps = 43/136 (31%)
Query: 326 CSNHGKYGGGICHCENGWKGPECDI--------------PASDCQYSDCSGHGS-CVEGT 370
HC G G C++ P C+ C+ + G
Sbjct: 10 AIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGN 69
Query: 371 CH--------CQSGWKGIGCQ---------------EAGC-PNACNRHGTCAFEN----E 402
C+ C G C C ACN +GT ++
Sbjct: 70 CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV 129
Query: 403 EYQCVCAEGWAGVDCN 418
QC C +G DC
Sbjct: 130 TGQCQCLPHVSGRDCG 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 6e-04
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 47/74 (63%)
Query: 36 QRVKFLVEENSVQSYAHMDEYSERYFNSISNVTAGVSSSGPIGVTDFSQVPDSFEEAPSV 95
Q +K L + S++ YA DS AP++
Sbjct: 20 QALKKL--QASLKLYA----------------------------------DDS---APAL 40
Query: 96 VELKDFNSLISATI 109
I AT+
Sbjct: 41 A--------IKATM 46
Score = 28.8 bits (63), Expect = 2.5
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 482 QRVKFLVEENSVQSYA 497
Q +K L + S++ YA
Sbjct: 20 QALKKL--QASLKLYA 33
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 40.2 bits (93), Expect = 8e-04
Identities = 23/124 (18%), Positives = 31/124 (25%), Gaps = 17/124 (13%)
Query: 299 GSCYLGKC--DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQ 356
+C C DG C+ C + GG C C P
Sbjct: 2 ATCLSQYCADKARDGVCDEACNSHACQ--------WDGGDCSLTMENPWANCSSPLPCWD 53
Query: 357 YSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRH---GTCAFENEEYQCVCAEGWA 413
Y + C C + + C H C +C GW
Sbjct: 54 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEEC----GWD 109
Query: 414 GVDC 417
G+DC
Sbjct: 110 GLDC 113
Score = 32.9 bits (74), Expect = 0.21
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 291 CPNGCSGHGSCYLGKCDCID-GYEGTDCSKSVCPVLCSNHG-----KYGGGICH-----C 339
C + G C C+ ++G DCS ++ + Y C
Sbjct: 9 CADKA-RDGVCDEA-CNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTV 66
Query: 340 ENGWKGPECDIPASDCQYSDC----SGHGSCVEGTCHCQSGWKGIGCQEAGCPN 389
E + EC + C+Y C +G + GW G+ C N
Sbjct: 67 ECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPEN 120
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 40.2 bits (93), Expect = 8e-04
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 20/117 (17%)
Query: 291 CPNGCSGHGSCYLGKCDCID-GYEGTDCSKSV------CPVLCSNHGKYGGGICH----- 338
C G+ C +C+ G++G DCS + C + G C
Sbjct: 10 CQEDA-GNKVC-SLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNS 67
Query: 339 CENGWKGPECDIPASDC------QYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPN 389
+ G +C C D G C +G + W G+ C E
Sbjct: 68 AGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPER 124
Score = 29.4 bits (65), Expect = 2.1
Identities = 20/122 (16%), Positives = 23/122 (18%), Gaps = 28/122 (22%)
Query: 316 DCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDC---------------QYSDC 360
C C N C C DC Q
Sbjct: 4 ACELPECQEDAGN--------KVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKY 55
Query: 361 SGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQC-----VCAEGWAGV 415
G C + G CQ A C + C W G+
Sbjct: 56 FSDGHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGL 115
Query: 416 DC 417
DC
Sbjct: 116 DC 117
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 40.7 bits (94), Expect = 9e-04
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 295 CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECD 349
C C C ++ + +G + G+C C GW G +C+
Sbjct: 427 VQVTFDC---DCAC------QAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
Score = 39.5 bits (91), Expect = 0.002
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 332 YGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383
C C C A + +G+G+ G C C GW G C+
Sbjct: 428 QVTFDCDCA-------CQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
Score = 33.7 bits (76), Expect = 0.13
Identities = 17/82 (20%), Positives = 21/82 (25%), Gaps = 13/82 (15%)
Query: 336 ICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHG 395
+ C + P C C CQ+ E N +G
Sbjct: 403 VRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC---DCACQA------QAEPNSHRCNNGNG 453
Query: 396 TCAFENEEYQCVCAEGWAGVDC 417
T E C C GW G C
Sbjct: 454 TF----ECGVCRCGPGWLGSQC 471
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 39.6 bits (92), Expect = 0.002
Identities = 36/204 (17%), Positives = 51/204 (25%), Gaps = 34/204 (16%)
Query: 290 TCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGW------ 343
C G +G G G+ +DG+ VC + H +G
Sbjct: 132 ECQTGYAGDGLI-CGEDSDLDGWP---NLNLVCATNATYHCIKDNCPHLPNSGQEDFDKD 187
Query: 344 -KGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENE 402
G CD + +D + + +G + CP N N
Sbjct: 188 GIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNG 247
Query: 403 EYQCVCAEGWAGVDCNIKL----EMSCNDDTDNDKDGVTDCSD----------------- 441
C+ G D + + D D D DGV D D
Sbjct: 248 -EGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDL 306
Query: 442 -SDCCSQPVCSDQPHIMCLASNDP 464
D C D N P
Sbjct: 307 VGDQCDNNEDIDDDGHQNNQDNCP 330
Score = 39.2 bits (91), Expect = 0.003
Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 11/164 (6%)
Query: 292 PNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIP 351
+ C H C Y+ C + G G +GW +
Sbjct: 109 THNCHKHAECIYLGHFSDPMYKCE------CQTGYAGDG-LICGEDSDLDGW-PNLNLVC 160
Query: 352 ASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPN---ACNRHGTCAFENEEYQCVC 408
A++ Y + + + GIG + + C Q
Sbjct: 161 ATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADY 220
Query: 409 AEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSD 452
+ G C+ + D D +G D D V ++
Sbjct: 221 DKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNE 264
Score = 37.3 bits (86), Expect = 0.011
Identities = 33/167 (19%), Positives = 47/167 (28%), Gaps = 34/167 (20%)
Query: 307 DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQ-YSDCSGHGS 365
C Y G K +C EN C +C +++C G
Sbjct: 74 PCPPRYRGNQPVGV-----GLEAAKTEKQVCEPEN-----PCKDKTHNCHKHAECIYLGH 123
Query: 366 CVEG--TCHCQSGWKGIGCQEA------GCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
+ C CQ+G+ G G G PN CA
Sbjct: 124 FSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLV--------------CATNATYHCI 169
Query: 418 NIKLEMSCNDDT-DNDKDGVTDCSDSDCCSQPVCSDQPHIMCLASND 463
N D DKDG+ D D D + V ++ + L +
Sbjct: 170 KDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPR 216
Score = 36.5 bits (84), Expect = 0.019
Identities = 31/175 (17%), Positives = 47/175 (26%), Gaps = 46/175 (26%)
Query: 317 CSKSVCP--VLCSNHGKYGGGIC-HCENGWKG--------PECDIPASDCQYSDCSGHGS 365
C + C CS+ G C C G+ G EC + C +
Sbjct: 6 CLSNPCFPGAQCSSFP-DGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCV 64
Query: 366 CVEGTCHCQ---SGWKGIGCQEAGCPNACNRHGTCAFENE-------------------- 402
+ HC ++G G A C EN
Sbjct: 65 NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHF 124
Query: 403 ---EYQCVCAEGWAGVDCNIKLEMSCNDDTDND--KDGVTDCSDSDCCSQPVCSD 452
Y+C C G+AG C +D+D D + C+ + +
Sbjct: 125 SDPMYKCECQTGYAGDGLI------CGEDSDLDGWPNLNLVCATNATYHCIKDNC 173
Score = 35.0 bits (80), Expect = 0.059
Identities = 25/161 (15%), Positives = 38/161 (23%), Gaps = 29/161 (18%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGP 346
++ C + H G E D G
Sbjct: 156 LNLVCATNATYHCIKDNCPHLPNSGQEDFD------------------------KDGIGD 191
Query: 347 ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQC 406
CD + +D + + +G + CP N N
Sbjct: 192 ACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNN-GEGD 250
Query: 407 VCAEGWAGVDCNIKL----EMSCNDDTDNDKDGVTDCSDSD 443
C+ G D + + D D D DGV D D+
Sbjct: 251 ACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNC 291
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 36.0 bits (84), Expect = 0.002
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 355 CQYSDCSGHGSCV--EG--TCHCQSGWKGIGCQ-----EAGCPNACNRHGTCAFENEE-- 403
C+ D HG C+ +G C C G+ G + E N C +GTC +N
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-GNGTC--KNVIGG 64
Query: 404 YQCVCAEGWAGVD 416
++C C EG+
Sbjct: 65 FECTCEEGFEPGP 77
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A
{Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB:
1ulm_A* 1uln_A
Length = 82
Score = 35.9 bits (82), Expect = 0.003
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 307 DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSC 366
+C + G C C CS G G +C G C + G C
Sbjct: 3 ECGERASGKRCPNGKC---CSQWGYCGTTDNYC-----GQGCQSQCDYWRCGRDFGGRLC 54
Query: 367 VEGTCHCQSGWKGIGCQ--EAGCPNACN 392
E C + GW G E GC + C+
Sbjct: 55 EEDMCCSKYGWCGYSDDHCEDGCQSQCD 82
Score = 27.8 bits (61), Expect = 2.3
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
CPNG CS G C G D G +C + GW G
Sbjct: 12 RCPNGKCCSQWGYC--GTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYS 69
Query: 348 CDIPASDCQYSDC 360
D CQ S C
Sbjct: 70 DDHCEDGCQ-SQC 81
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 39.0 bits (90), Expect = 0.003
Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 25/186 (13%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
C + +C DC DG + V + HC +G
Sbjct: 133 QCNSSTCIPQLWACD-NDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 191
Query: 348 CDIPASDCQYSDCSGHGSCVEGTCH-----CQSGW---KGIGCQ----------EAGCPN 389
D S +C TC C G C E GC N
Sbjct: 192 SWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 251
Query: 390 ACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPV 449
G F+ +C+ + CN+ + D + G +C D++ V
Sbjct: 252 VTLCEGPNKFKCHSGECITLDKV----CNMARDCRDWSDEPIKECGTNECLDNNGGCSHV 307
Query: 450 CSDQPH 455
C+D
Sbjct: 308 CNDLKI 313
Score = 37.9 bits (87), Expect = 0.007
Identities = 22/165 (13%), Positives = 39/165 (23%), Gaps = 14/165 (8%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGK-------YGGGICHCE 340
C +G + C DC D + L +N G G C C
Sbjct: 262 KCHSGECITLDKVCN-MARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 320
Query: 341 NGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFE 400
+G++ C+ D C G C+E + +
Sbjct: 321 DGFQLVAQ----RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 376
Query: 401 NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCC 445
+ + S + N T+ + +
Sbjct: 377 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 421
Score = 36.7 bits (84), Expect = 0.017
Identities = 26/175 (14%), Positives = 39/175 (22%), Gaps = 10/175 (5%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWK--- 344
C +G G C + DC D + C V LC K+ C K
Sbjct: 221 QCSDGNCIHGSRQCD-REYDCKDMSDEVGC---VNVTLCEGPNKFKCHSGECITLDKVCN 276
Query: 345 GPECDIPASDCQYSDCS-GHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEE 403
SD +C G C IG + + +E
Sbjct: 277 MARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE 336
Query: 404 YQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMC 458
Q V+ + C + D + +
Sbjct: 337 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 391
Score = 34.8 bits (79), Expect = 0.080
Identities = 33/187 (17%), Positives = 48/187 (25%), Gaps = 37/187 (19%)
Query: 288 SSTCPNG----CSGHGSCYL------GKCDCIDGYEGTDCSKSVCPV---LCSN-----H 329
S TC +G C G+ DC +G + C C C +
Sbjct: 44 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISR 103
Query: 330 GKYGGGICHC-----ENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQE 384
C E C + C S C + C+ G +
Sbjct: 104 QFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 163
Query: 385 AGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDC 444
G C ++ C G +C I C+ D D SD +
Sbjct: 164 RGLYVFQGDSSPC----SAFEFHCLSG----EC-IHSSWRCDGGPDCK-----DKSDEEN 209
Query: 445 CSQPVCS 451
C+ C
Sbjct: 210 CAVATCR 216
Score = 33.6 bits (76), Expect = 0.18
Identities = 33/179 (18%), Positives = 47/179 (26%), Gaps = 29/179 (16%)
Query: 290 TCPNG-CSGHGSCYLGKCDCIDGYEGTD--CSKSVCPVLCSNHGKYGGGICHCENGWKGP 346
C +G C + G +C DG + + C C S GG + C +
Sbjct: 12 QCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCK---SGDFSCGGRVNRCIPQFW-- 66
Query: 347 ECDIPASDCQY-SDCSG--HGSCVEGTCHCQSG---WKGIGC-QEAGCPNACNRHGTCAF 399
CD DC SD G +C + C G + C + C + +
Sbjct: 67 RCDGQV-DCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVL 125
Query: 400 ENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMC 458
C I +C D DC D C
Sbjct: 126 TCGPASFQCNSST-----CIPQLWAC--------DNDPDCEDGSDEWPQRCRGLYVFQG 171
Score = 30.5 bits (68), Expect = 1.3
Identities = 18/153 (11%), Positives = 35/153 (22%), Gaps = 19/153 (12%)
Query: 274 THEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYG 333
+ E E + + + +C C DG++
Sbjct: 285 SDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR--------------- 329
Query: 334 GGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNR 393
CE+ + + D + C + C EG NR
Sbjct: 330 ----RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 385
Query: 394 HGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCN 426
H + + + E++ N
Sbjct: 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN 418
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 36.2 bits (84), Expect = 0.005
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 317 CSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCV---EGTCHC 373
C ++ C C +C C G+ + + + C + +C C
Sbjct: 7 CFRANCEYQCQPL-DQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCEC 65
Query: 374 QSGWKGIGCQEAGCPNACNRHGTCAFE--NEE--YQCVCAEGW 412
G+ + C G C+ N ++C+C
Sbjct: 66 PEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDS 108
Score = 35.8 bits (83), Expect = 0.006
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 24/101 (23%)
Query: 355 CQYSDCSGHGSCVEGT-----CHCQSGWKGIGCQEAGCPNACNRHGTCAFE---NEEYQC 406
C ++C C C C G+ I + C CN+ C + N + C
Sbjct: 7 CFRANCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTA-CPADCDPNTQASC 63
Query: 407 VCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQ 447
C EG+ D C D + +C + CS
Sbjct: 64 ECPEGYILDDGF-----ICTD--------IDECENGGFCSG 91
Score = 32.0 bits (73), Expect = 0.14
Identities = 18/96 (18%), Positives = 24/96 (25%), Gaps = 27/96 (28%)
Query: 305 KCDCIDGYEGTDCSKSVCPVLCSNHG------KYGGGICHCENGWKGP---------ECD 349
C C +G+ C + C+ C C G+ EC+
Sbjct: 25 LCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECE 84
Query: 350 IPASDCQYSDCSGHGSCV--EG--TCHCQSGWKGIG 381
CSG C G C C G
Sbjct: 85 NG------GFCSGV--CHNLPGTFECICGPDSALAG 112
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 38.7 bits (89), Expect = 0.005
Identities = 35/184 (19%), Positives = 47/184 (25%), Gaps = 23/184 (12%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
C +G C G DC D + +C+ + C C +G
Sbjct: 200 HCLSGECIHSSWRC-DGGPDCKDKSDEENCAVATCR----------PDEFQCSDGNCIHG 248
Query: 348 CDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGC---PNACNRHGTCAFENEEY 404
+ D S CV T C C CN C ++E
Sbjct: 249 SRQCDREYDCKDMSDEVGCVNVTLCEGPNK--FKCHSGECITLDKVCNMARDCRDWSDEP 306
Query: 405 QCVCAEGWAGVDCNIKLEMSCNDDTDNDK----DGVTDCSDSDCCSQPVCSDQPHIMCLA 460
C +D N CND + DG + C C D L
Sbjct: 307 IKECGT-NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLC 365
Query: 461 SNDP 464
N
Sbjct: 366 VNLE 369
Score = 37.9 bits (87), Expect = 0.008
Identities = 25/179 (13%), Positives = 40/179 (22%), Gaps = 14/179 (7%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
C +G + C DC D + L +N GG C + G E
Sbjct: 280 KCHSGECITLDKVCN-MARDCRDWSDEPIKECGTNECLDNN----GGCSHVCNDLKIGYE 334
Query: 348 CDIPASDC--QYSDCSGHGSCV-----EGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFE 400
C P C C C G C+E + +
Sbjct: 335 CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 394
Query: 401 NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCL 459
+ + S + N T+ + + + L
Sbjct: 395 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 453
Score = 37.1 bits (85), Expect = 0.013
Identities = 35/185 (18%), Positives = 52/185 (28%), Gaps = 33/185 (17%)
Query: 288 SSTCPNG----CSGHGSCYL------GKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGIC 337
S TC +G C G+ DC +G + C C + + G C
Sbjct: 62 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCS---QDEFRCHDGKC 118
Query: 338 HCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTC 397
+ D D +C + C S C AC+ C
Sbjct: 119 ISRQFVCDSDRDCL--DGSDEASCPVLTCGPASFQCNSST----CIPQ--LWACDNDPDC 170
Query: 398 AFENEEYQCVCAEGWA----GVDCNIKLEMSCNDDTDNDK----DGVTDC---SDSDCCS 446
++E+ C + C+ E C DG DC SD + C+
Sbjct: 171 EDGSDEWPQRCRGLYVFQGDSSPCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 229
Query: 447 QPVCS 451
C
Sbjct: 230 VATCR 234
Score = 36.0 bits (82), Expect = 0.033
Identities = 32/196 (16%), Positives = 59/196 (30%), Gaps = 25/196 (12%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGIC---------- 337
C +G G C + DC D + C +V N K G C
Sbjct: 239 QCSDGNCIHGSRQCD-REYDCKDMSDEVGCV-NVTLCEGPNKFKCHSGECITLDKVCNMA 296
Query: 338 -HCENGWKGPECDIPASDCQYSDCSGHGSCVE----GTCHCQSGWKGIGCQEAGCPNACN 392
C + P + ++C ++ C + C C G++ + + + C
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 356
Query: 393 RHGT----CAFENEEYQCVCAEGW--AGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCS 446
T C Y+C C EG+ K S ++ V +
Sbjct: 357 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 416
Query: 447 QPVCSDQPHIMCLASN 462
+ + +++ L +
Sbjct: 417 TSLIPNLRNVVALDTE 432
Score = 34.8 bits (79), Expect = 0.069
Identities = 34/187 (18%), Positives = 46/187 (24%), Gaps = 35/187 (18%)
Query: 290 TCPNG--CSGHGSCYLGKCDCIDGYEGTDCSKSVCPV--------LCSNHGKYGGGICHC 339
C +G S C DC+DG + C C C C
Sbjct: 112 RCHDGKCISRQFVC-DSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC 170
Query: 340 ENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGW---KGIGC-QEAGCPNACNRHG 395
E+G Y C HC SG C C + +
Sbjct: 171 EDGSDEWPQRCR---GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN 227
Query: 396 TCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSD----SDCCSQPVCS 451
+ C++G +C I C D DC D C + +C
Sbjct: 228 CAVATCRPDEFQCSDG----NC-IHGSRQC--------DREYDCKDMSDEVGCVNVTLCE 274
Query: 452 DQPHIMC 458
C
Sbjct: 275 GPNKFKC 281
Score = 31.0 bits (69), Expect = 1.2
Identities = 23/118 (19%), Positives = 31/118 (26%), Gaps = 21/118 (17%)
Query: 345 GPECDIPASDCQYSDCSGHGS-CVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEE 403
G + + + + G C CQ G C C+ C ++E
Sbjct: 2 GWKLRWTVALLLAAAGTAVGDRCERNEFQCQDG----KCISYKW--VCDGSAECQDGSDE 55
Query: 404 YQCVCAEGWAGVDCNIKLEMSCNDDT----DNDK--DGVTDC---SDSDCCSQPVCSD 452
Q C + SC DG DC SD C CS
Sbjct: 56 SQETCLSVTCKSG-----DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQ 108
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 38.4 bits (89), Expect = 0.006
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 386 GCPNACNRHGTCAFENE-EYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSD 443
G P+ C+ H C E + CVCA GWAG C DTD DG D
Sbjct: 24 GSPSECHEHADCVLERDGSRSCVCAVGWAGNGIL------CGRDTDL--DGFPDEKLRC 74
Score = 32.6 bits (74), Expect = 0.34
Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 354 DCQYSDCSGHGSCVE-----GTCHCQSGWKGIGCQEA------GCPNACNRHGTCAFENE 402
D S+C H CV +C C GW G G G P+ R +
Sbjct: 23 DGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEKLRCPERQCRKD 82
Query: 403 EYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSD 441
V G VD + + D D D DGV + D
Sbjct: 83 NCVTVPNSGQEDVDRD---GIGDACDPDADGDGVPNEKD 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.006
Identities = 39/250 (15%), Positives = 72/250 (28%), Gaps = 62/250 (24%)
Query: 81 DFSQVPDSFEEAPSVVELKDFNSLISATIPS---FQFW---NSDFNIEQSAFF----RFN 130
D V D + S E+ ++S S FW + + Q F R N
Sbjct: 34 DCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRIN 90
Query: 131 FDLPRGSNFAV--YGRRNVAPSITNYDFSE-----------FIKDN-TRTSAFFRFN--- 173
+ F + PS+ + E F K N +R + +
Sbjct: 91 YK------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 174 FDLPRGSNFAVYGRRN------VAPSITNYDFSEFIKGG----KINQKRSVDSILGHDDG 223
+L N + G +Y + + S +++L +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EML 202
Query: 224 VSFTSHISNQHHTLSKRSDQTTETNFVEVQI-LKFLMSGKWF---LSVYNDDVKTHEI-- 277
I + S S + +Q L+ L+ K + L V +V+ +
Sbjct: 203 QKLLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWN 260
Query: 278 ------KLLI 281
K+L+
Sbjct: 261 AFNLSCKILL 270
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 37.7 bits (87), Expect = 0.007
Identities = 19/136 (13%), Positives = 30/136 (22%), Gaps = 22/136 (16%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSK-SVCPVLCSNHGKYGGGICHCENG-WKG 345
P +C+ G E + C VC L + G +C +
Sbjct: 222 PEELPGQTYDAT----QQCNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVE 277
Query: 346 PECDIPASDCQYSDCSGHGSCVEGTCHCQSGW--------------KGIGCQEAGCPNAC 391
C C + W G+ C N
Sbjct: 278 GTPCGKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPA 337
Query: 392 NRHGT--CAFENEEYQ 405
R+ C + Y+
Sbjct: 338 PRNNGRYCTGKRAIYR 353
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 37.6 bits (87), Expect = 0.009
Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 352 ASDCQYSDCSGHGSCV------EGTCHCQSGWKGIGCQEAGCP---NACNRHGTCAFENE 402
A C + CSGHG CV + I G P A
Sbjct: 336 ALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAV 395
Query: 403 EYQCVCAEGWAGVDC 417
E++C C GW C
Sbjct: 396 EFKCRCYPGWQAPWC 410
Score = 33.8 bits (77), Expect = 0.15
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 14/78 (17%)
Query: 317 CSKSVCPVLCSNHGK------YGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEG- 369
CS++ LCS HG+ + + + +
Sbjct: 339 CSQA----LCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMA 394
Query: 370 ---TCHCQSGWKGIGCQE 384
C C GW+ C+
Sbjct: 395 VEFKCRCYPGWQAPWCER 412
Score = 29.9 bits (67), Expect = 2.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 337 CHCENGWKGPECDIPA 352
C C GW+ P C+ +
Sbjct: 399 CRCYPGWQAPWCERKS 414
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 35.6 bits (82), Expect = 0.017
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEAGC 387
CQ CSGHG CVE TC+C G+ G CQ
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
Score = 34.8 bits (80), Expect = 0.027
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 372 HCQSGWKGIGCQ-EAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
C + C + P +C+ HG C Y C C G+ G C
Sbjct: 108 ACHKLKAAL-CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 32.5 bits (74), Expect = 0.18
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 288 SSTCPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSVC 322
+S P CSGHG C C+C GY G C
Sbjct: 120 ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
Score = 27.1 bits (60), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 320 SVCPVLCSNHG----KYGGGICHCENGWKGPEC 348
S P CS HG C+C+ G+ GP+C
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 36.6 bits (84), Expect = 0.019
Identities = 18/144 (12%), Positives = 31/144 (21%), Gaps = 23/144 (15%)
Query: 289 STCPNGCSGHGSCYLG-----KCDCIDGYEGTDCSK--SVCPV---LCSNHGKYGGGI-- 336
+T P C G + + G C + P +
Sbjct: 244 TTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDEN 303
Query: 337 -CHCENGWKGPEC--DIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNR 393
C +G + P C +Y C +C A
Sbjct: 304 YCRNPDGKRAPWCHTTNSQVRWEY--------CKIPSCDSSPVSTEQLAPTAPPELTPVV 355
Query: 394 HGTCAFENEEYQCVCAEGWAGVDC 417
+ + Y+ + G C
Sbjct: 356 QDCYHGDGQSYRGTSSTTTTGKKC 379
Score = 33.5 bits (76), Expect = 0.17
Identities = 29/143 (20%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 326 CSNHGKYGGGICHCENG-WKGPECDIPASDCQYSDCSGHGSCVEGT-----CHCQSGWKG 379
C N + C + + CDIP C++GT + G
Sbjct: 215 CRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSG 274
Query: 380 IGCQE--AGCPNACNRHGTCAFEN--EEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDG 435
CQ A P+ NR +E C +G C T N +
Sbjct: 275 HTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWC----------HTTNSQVR 324
Query: 436 VTDCSDSDCCSQPVCSDQPHIMC 458
C C S PV ++Q
Sbjct: 325 WEYCKIPSCDSSPVSTEQLAPTA 347
Score = 30.0 bits (67), Expect = 2.2
Identities = 18/106 (16%), Positives = 26/106 (24%), Gaps = 14/106 (13%)
Query: 287 VSSTCPNGCSGHGSCYLGK------CDCIDGYEGTDC---SKSVCPVLCSNHGKYGGGIC 337
S+ P+ + + K C DG C + V C +
Sbjct: 280 WSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVS 339
Query: 338 HCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383
+ P P G G GT + G CQ
Sbjct: 340 TEQLAPTAPPELTPVVQD---CYHGDGQSYRGTS--STTTTGKKCQ 380
Score = 28.9 bits (64), Expect = 4.5
Identities = 22/114 (19%), Positives = 29/114 (25%), Gaps = 17/114 (14%)
Query: 288 SSTCPNGCSGHGSCYLGKC-------DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCE 340
+ + G G Y G C T P N+ G + +C
Sbjct: 352 TPVVQDCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTP---ENYPNAGLTMNYCR 408
Query: 341 N--GWKGPEC-----DIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGC 387
N KGP C + C CSG + V E C
Sbjct: 409 NPDADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEEDC 462
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 34.7 bits (80), Expect = 0.024
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 382 CQ-EAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
C A +C+ HG C Y C C G++G+ C
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 34.4 bits (79), Expect = 0.031
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA 385
C + CSGHG CVE TC C G+ G+ C++
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI 156
Score = 30.5 bits (69), Expect = 0.60
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 288 SSTCPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSV 321
++ CSGHG C C C G+ G C + V
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 34.4 bits (79), Expect = 0.027
Identities = 28/153 (18%), Positives = 37/153 (24%), Gaps = 49/153 (32%)
Query: 291 CPNGCSGHGSCYLG-KCDCIDGYEGTDCSKSVCPVLCS--NHGKYGGGICHCENGWKGPE 347
C C SC C C G+ + C N E
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDIN------------------E 46
Query: 348 CDIPASDCQYSDCSGHGSCV--EG--TCHCQSGWK------------GIGCQE----AGC 387
C + C C EG C C G++ CQ+ +
Sbjct: 47 CATLSKVS----CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 388 PNACNRHGTCAFENEE--YQCVCAEGWAGVDCN 418
+ C+ C N Y C C GW
Sbjct: 103 QHQCDSSTVC--FNTVGSYSCRCRPGWKPRHGI 133
Score = 30.6 bits (69), Expect = 0.55
Identities = 25/106 (23%), Positives = 32/106 (30%), Gaps = 31/106 (29%)
Query: 360 CSGHGSCVEG-TCHCQSGWKGIG---------------CQEAGCPNACNRHGTCAFENEE 403
C SCV C C G+ C +C + C N E
Sbjct: 9 CPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLS-KVSCGKFSDC--WNTE 65
Query: 404 --YQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQ 447
Y CVC+ G+ E T ++ T C D D CS
Sbjct: 66 GSYDCVCSPGY---------EPVSGAKTFKNESENT-CQDVDECSS 101
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.6 bits (81), Expect = 0.034
Identities = 43/243 (17%), Positives = 65/243 (26%), Gaps = 23/243 (9%)
Query: 249 FVEVQILKFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDC 308
+ L +L + W S D V+ + I L + E CP G +C +
Sbjct: 119 IEKNNELCYLATIDW--SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVING 176
Query: 309 IDGYEGTDCSK--SVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGH--- 363
S VCP +C +HG G+C C P + C
Sbjct: 177 QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGN--CSQPDDPTKCVACRNFYLD 234
Query: 364 GSCVE----GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFEN---EEYQCV--CAEGWAG 414
G CVE H Q + C +C+ C G+
Sbjct: 235 GRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTM 294
Query: 415 VDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCLASNDPVEVLLRKQPP 474
N + C + + V S Q C N + + +R
Sbjct: 295 NSSN----LLCTPCLGPCPKVCHLL-EGEKTIDSVTSAQELRGCTVINGSLIINIRGGNN 349
Query: 475 SVT 477
Sbjct: 350 LAA 352
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin
VI; hevein domain, superantigen, saccharide binding
binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP:
g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A*
1iqb_A
Length = 89
Score = 32.8 bits (74), Expect = 0.038
Identities = 20/89 (22%), Positives = 25/89 (28%), Gaps = 11/89 (12%)
Query: 295 CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASD 354
G +C +C I G+ G + C P C
Sbjct: 6 QGGGSTCPGLRCCSIWGWCGDS-EPYCGRTCENKCWSGERSDHRCGAAVGNPPC--GQDR 62
Query: 355 CQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383
C CS HG C G +C G CQ
Sbjct: 63 C----CSVHGWCGGGNDYCSGG----NCQ 83
Score = 32.8 bits (74), Expect = 0.043
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 308 CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCV 367
C G+ C C CS G G +C + SD + G+ C
Sbjct: 3 CGSQGGGSTCPGLRC---CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCG 59
Query: 368 EGTCHCQSGWKGIG---CQEAGCPNACN 392
+ C GW G G C C C+
Sbjct: 60 QDRCCSVHGWCGGGNDYCSGGNCQYRCS 87
Score = 27.4 bits (60), Expect = 3.7
Identities = 9/58 (15%), Positives = 12/58 (20%)
Query: 360 CSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
G +C C GW G G ++ V C
Sbjct: 6 QGGGSTCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRC 63
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.3 bits (80), Expect = 0.050
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 7/104 (6%)
Query: 291 CPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDI 350
C H C C + D K C C C + +
Sbjct: 50 SLVWCQNHKQCSKCLEPCKESG---DLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLV 106
Query: 351 PASDCQYSDCSG--HGSCVEGTCHCQSGWKGI-GCQEAGCPNAC 391
DC + + +CVE +C + G+ C GC + C
Sbjct: 107 KQGDCPAPEKASGFAAACVE-SCEVDNECSGVKKCCSNGCGHTC 149
Score = 34.2 bits (77), Expect = 0.11
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 359 DCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C H C + C+ ++ C + C F + Y+C+ + +
Sbjct: 53 WCQNHKQCSKCLEPCKESGD---LRKHQCQSFC----EPLFPKKSYECLTSCEFLKYILL 105
Query: 419 IKLEMSCNDDTDNDKDG--VTDCSDSDCCS--QPVCSDQPHIMCLASNDPVEVLLRKQPP 474
+K + + V C + CS + CS+ C + + K
Sbjct: 106 VKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRK 165
Query: 475 SVTAS 479
+ +
Sbjct: 166 ELRFT 170
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 34.9 bits (80), Expect = 0.073
Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 21/153 (13%)
Query: 314 GTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSD--CSGHGSCVE--- 368
G + S + C + + C +D D +G +
Sbjct: 170 GLETSLAECT--------FTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMK 221
Query: 369 ---GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSC 425
G C + C+ + G C Q C + ++ +
Sbjct: 222 ACDGINDCGDQSDELCCKACQGKGFHCKSGVCI----PSQYQCNGEVDCITGEDEVGCAG 277
Query: 426 NDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMC 458
++ + +D D + + S P + C
Sbjct: 278 FASVAQEETEIL-TADMDAERRRIKSLLPKLSC 309
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 34.5 bits (79), Expect = 0.073
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 282 KEAEGVSSTCPNGCSGHGSCYLG--------KCDCIDGYEGTDCSK 319
+EAE V++ CS HG +L KC+C Y G DCS+
Sbjct: 10 EEAEAVANI---NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSE 52
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 31.9 bits (73), Expect = 0.082
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 22/80 (27%)
Query: 347 ECDIPASDCQYSDCSGHGSCV--EG--TCHCQSGWKGIGCQEAGC--------PNACNRH 394
EC I C G G CV G C C G++ C R
Sbjct: 5 ECRISPDLC------GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG 58
Query: 395 GTCAFENEE--YQCVCAEGW 412
G C N E Y+C C G
Sbjct: 59 GVC--HNTEGSYRCECPPGH 76
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 34.2 bits (78), Expect = 0.095
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 341 NGWKGPECDIPASDCQYSDCSGHGSCVEG----TCHC-QSGWKGIGCQEAGCPNACNRHG 395
NG C+ P++ CQ CS G C++ +C C + + G C + G ++ G
Sbjct: 174 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
Query: 396 TC 397
Sbjct: 234 GQ 235
Score = 29.6 bits (66), Expect = 2.4
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 358 SDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAE-GWAGVD 416
SD +E C S CQ ++C+ G C + + + C C+ ++G
Sbjct: 168 SDALFCNGQIERGCEGPSTT----CQ----EDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
Query: 417 CNIKLEMSC 425
CN
Sbjct: 220 CNDPGTTYI 228
Score = 28.0 bits (62), Expect = 9.2
Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 313 EGTDCSKSVC-PVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTC 371
G + + C CSN G C W G C DC + SG GT
Sbjct: 179 RGCEGPSTTCQEDSCSNQGV-------CLQQWDGFSC-----DCSMTSFSGPLCNDPGTT 226
Query: 372 HCQSGWKG 379
+ S G
Sbjct: 227 YIFSKGGG 234
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 30.1 bits (69), Expect = 0.096
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
N C G+C + Y+C C G+ G +C +
Sbjct: 8 SNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
C+ + C GSC + C C G++G C+
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 26.7 bits (60), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 288 SSTCPNGCSGHGSCYLG----KCDCIDGYEGTDC 317
S+ C NG GSC +C C G+EG +C
Sbjct: 8 SNPCLNG----GSCKDDINSYECWCPFGFEGKNC 37
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 34.1 bits (77), Expect = 0.12
Identities = 32/186 (17%), Positives = 49/186 (26%), Gaps = 31/186 (16%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSK--SVCPVLCSNHGKYG-GGICH--CENG 342
CP G +C + S VCP +C +HG G CH C
Sbjct: 156 GDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGN 215
Query: 343 WKGPECDIPASDCQYSDCSGH---GSCVEGTCHCQSGW----KGIGCQEAGCPNACNRHG 395
P+ + C C G CVE C + + C + ++
Sbjct: 216 CSQPDD---PTKCV--ACRNFYLDGRCVE---TCPPPYYHFQDWRCVNFSFCQDLHHKCK 267
Query: 396 TCAFEN------EEYQCV--CAEGWAGVDCN---IKLEMSCNDDTDNDKDGVTDCSDSDC 444
+ +C+ C G+ N C + T S +
Sbjct: 268 NSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSA 327
Query: 445 CSQPVC 450
C
Sbjct: 328 QELRGC 333
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 33.5 bits (76), Expect = 0.17
Identities = 24/145 (16%), Positives = 35/145 (24%), Gaps = 43/145 (29%)
Query: 286 GVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKG 345
G + C + C +C L C C C K C
Sbjct: 234 GSPADCQSACCNATTCKL--------QHEAQCDSEECCEKCKF--KGARAECRAAKD--- 280
Query: 346 PECDIPAS-DCQYSDC-------------SGHGSCVEGTCH-----CQSGWKGIGCQEAG 386
+CD+P Q ++C + G C G C C +
Sbjct: 281 -DCDLPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALRGPGVK---V 336
Query: 387 CPNAC-------NRHGTCAFENEEY 404
++C G C E
Sbjct: 337 SRDSCFTLNQRTRGCGLCRMEYGRK 361
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.2 bits (70), Expect = 0.17
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 14/75 (18%)
Query: 354 DCQYSDCSGHGSCVEG-----TCHCQSGWKGIG--CQEAGCPNACNRHGTCA-------F 399
C ++ + +C C +K C A +++G CA
Sbjct: 6 RCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMN 65
Query: 400 ENEEYQCVCAEGWAG 414
+ E C C + +
Sbjct: 66 DKNEIVCKCTKEGSE 80
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 32.1 bits (73), Expect = 0.25
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 382 CQ-EAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
C + +C++ G C Y C C G+ G +C
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 30.5 bits (69), Expect = 0.70
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
CQ CS G C+E TC C G+ G C+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 288 SSTCPNGCSGHGSCYLG----KCDCIDGYEGTDC 317
+S CS G C C C G+ G +C
Sbjct: 120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 27.1 bits (60), Expect = 9.2
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 320 SVCPVLCSNHGK----YGGGICHCENGWKGPECDIPASDCQ 356
S + CS G+ G C C G+ GPEC+ D
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 32.2 bits (73), Expect = 0.25
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 2/53 (3%)
Query: 289 STCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCEN 341
+ CP+ C C+ + + K C C N
Sbjct: 157 ADCPSACVN--RLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCFCHN 207
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 32.9 bits (75), Expect = 0.31
Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 46/202 (22%)
Query: 281 IKEAEGVSSTCPNGCSGHGSCYLGKCDCI-DGYEGTDCSKS-----------VCPVLCSN 328
I + + V S G S SC L CI D + T + S VC +C++
Sbjct: 178 ITKLDKVVS----GFS-LKSCALSNLACIRDIFPNTVFADSNIDSVMAPDAFVCGRICTH 232
Query: 329 HGKYGGGICHCENGWKGPEC-DIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGC 387
H P C ++ S C+ T +SG +
Sbjct: 233 H----------------PGCLFFTFFSQEWPKESQRNLCLLKTS--ESGLPSTRIK---- 270
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDK-----DGVTDCSD- 441
+ + C + + E+ ++ C
Sbjct: 271 KSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFF 330
Query: 442 SDCCSQPVCSDQPHIMCLASND 463
+ +Q C++ L +
Sbjct: 331 TYTPAQASCNEGKGKCYLKLSS 352
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 32.2 bits (72), Expect = 0.46
Identities = 20/169 (11%), Positives = 38/169 (22%), Gaps = 9/169 (5%)
Query: 298 HGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQY 357
SC G C +K +C CS + C +C + +
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCH-----NQCAAGCTGPRE 221
Query: 358 SDC-SGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVD 416
SDC E TC + + + + V
Sbjct: 222 SDCLVCRKFRDEATCKDTCPPLMLYNPTTYQ---MDVNPEGKYSFGATCVKKCPRNYVVT 278
Query: 417 CNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCLASNDPV 465
+ +C D+ ++ + I + +
Sbjct: 279 DHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSI 327
Score = 28.4 bits (62), Expect = 6.1
Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 11/120 (9%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLC-SNHGKYGGGICHCENGWKGP 346
+TC + C EG + C C N+ G C
Sbjct: 233 EATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSC--------- 283
Query: 347 ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQC 406
+D + G C + C+ GIG E + N F+N
Sbjct: 284 -VRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 31.8 bits (71), Expect = 0.65
Identities = 24/150 (16%), Positives = 36/150 (24%), Gaps = 28/150 (18%)
Query: 285 EGVSSTCPNGCSGHGSCYLGKCDCIDG------YEGTDCSKSVCPVLCSNHG---KYGGG 335
E + TCP G G + C C K L + K G
Sbjct: 705 ESIELTCPKGFVVAGPS---RYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGS 761
Query: 336 ICHCENGWKGPECDIP-------ASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCP 388
C C + PE D D +D +C C + +
Sbjct: 762 ECICMS----PEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFL----HI 813
Query: 389 NACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
+C + E + + C
Sbjct: 814 GSCQDGRQLEWGLERTRL-SSNSTKKESCG 842
Score = 31.4 bits (70), Expect = 0.80
Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 5/91 (5%)
Query: 326 CSNHGKYGGGICHCENGWK-----GPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGI 380
++GG C C I +DC+ G C+ C
Sbjct: 85 VLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCG 144
Query: 381 GCQEAGCPNACNRHGTCAFENEEYQCVCAEG 411
+ T + + G
Sbjct: 145 DNSDERDCGRTKAVCTRKYNPIPSVQLMGNG 175
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 29.7 bits (66), Expect = 0.75
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 355 CQYSDCSGHGSCVE-----GTCHCQSGWKGIG--CQEAGCP-----NACNRHGTCAFENE 402
C ++ + +C C G+K +G C A C C +++
Sbjct: 13 CIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDK 72
Query: 403 -EYQCVCAEGWAG 414
E +C C + +
Sbjct: 73 KEVECKCTKEGSE 85
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 28.9 bits (64), Expect = 0.85
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 378 KGIGCQEAGCPNACNR---HGTCAF--ENEEYQCVCAEGWAGVDC 417
KG+G + C HG C + E C+C G+ G C
Sbjct: 31 KGLGKKRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERC 75
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 31.0 bits (69), Expect = 0.87
Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 11/157 (7%)
Query: 291 CPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDI 350
C + C+ Y +C C DG++ + C + C N G +C
Sbjct: 10 CSHVCNDLKIGY--ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ---LCVNLEGGYKCQC 64
Query: 351 PASDCQYSD---CSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCV 407
C GS + + + + + + E
Sbjct: 65 EEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN 124
Query: 408 CAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDC 444
W+ D + ++ S D + D
Sbjct: 125 R-IYWS--DLSQRMICSTQLDRAHGVSSYDTVISRDI 158
Score = 31.0 bits (69), Expect = 0.93
Identities = 18/140 (12%), Positives = 32/140 (22%), Gaps = 10/140 (7%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIG 381
C +C++ G C C +G++ C+ D C G G
Sbjct: 10 CSHVCND--LKIGYECLCPDGFQLV----AQRRCEDIDECQDPDTCSQLCVNLEG--GYK 61
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAG--VDCNIKLEMSCNDDTDNDKDGVTDC 439
CQ C + + S + N T+
Sbjct: 62 CQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV 121
Query: 440 SDSDCCSQPVCSDQPHIMCL 459
+ + + L
Sbjct: 122 ASNRIYWSDLSQRMICSTQL 141
Score = 29.4 bits (65), Expect = 3.0
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCA--FENEE- 403
EC C + C+ E C C G++ + + + C TC+ N E
Sbjct: 2 ECLDNNGGCSH-VCNDLKIGYE--CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEG 58
Query: 404 -YQCVCAEGWA----GVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMC 458
Y+C C EG+ C ++ T+ + S+ S +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 30.8 bits (69), Expect = 0.89
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 22/77 (28%)
Query: 372 HCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDN 431
+ G GC + C + YQC C G
Sbjct: 262 RQPNATNPCGIDNGGCSHLC----LMSPVKPFYQCACPTGVKL----------------- 300
Query: 432 DKDGVTDCSDSDCCSQP 448
++G T C D +
Sbjct: 301 LENGKT-CKDGNSHHHH 316
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 31.1 bits (70), Expect = 1.0
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 307 DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSC 366
C +E D PVL G+ + H E C P +C+ +
Sbjct: 561 GCSSHWEVEDLGTHKPPVL-RPRGQPNQCVGHREASIHASCCHAPGLECKVKEHGIPAPQ 619
Query: 367 VEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFEN 401
+ T C+ GW GC + P + G A +N
Sbjct: 620 EQVTVACEEGWTLTGC--SALPGTSHVLGAYAVDN 652
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 11/138 (7%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
++T S K G + VC LCS G +G C +
Sbjct: 448 ANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSR 507
Query: 348 C-----DIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENE 402
+ + + + C++ C I C G N CA +
Sbjct: 508 GRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCI----QCAHYID 563
Query: 403 EYQCV--CAEGWAGVDCN 418
CV C G G +
Sbjct: 564 GPHCVKTCPAGVMGENNT 581
Score = 28.1 bits (61), Expect = 9.4
Identities = 22/177 (12%), Positives = 39/177 (22%), Gaps = 3/177 (1%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
+ C C G C T +S C ++C C
Sbjct: 192 AQQCSGRCRGKSPSD--CCHNQCAAGCTGPRESDC-LVCRKFRDEATCKDTCPPLMLYNP 248
Query: 348 CDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCV 407
S +CV+ C A ++ + ++ +
Sbjct: 249 TTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGP 308
Query: 408 CAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCLASNDP 464
C + G+ + + T+ D PV DP
Sbjct: 309 CRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDP 365
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 30.3 bits (67), Expect = 1.3
Identities = 27/181 (14%), Positives = 46/181 (25%), Gaps = 21/181 (11%)
Query: 299 GSCYL-----GKCDCIDGYEGT--DCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIP 351
G C+L C + + T +C S ++ + G + C
Sbjct: 1 GVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPC 60
Query: 352 ASDCQYSDCSGHGSCV--EGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVC- 408
C +C +C G C+ C C R C + Y+ C
Sbjct: 61 KDSCDGVECGPGKACRMLGGRPRCE-------CAPD-CSGLPARLQVCGSDGATYRDECE 112
Query: 409 ---AEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCLASNDPV 465
A D ++ C ++ D C C + P
Sbjct: 113 LRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPG 172
Query: 466 E 466
+
Sbjct: 173 Q 173
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.4 bits (68), Expect = 1.3
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 363 HGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGW 412
+ + G C+ G GC C + ++ C C +G
Sbjct: 260 NLTQPRGVNWCERTTLSNG----GCQYLCLPAPQINPHSPKFTCACPDGM 305
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 29.9 bits (67), Expect = 1.6
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 289 STCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSN--HGKYGGGICHCEN 341
CP+ C C + T+C + C + C C N
Sbjct: 168 GDCPSACDN--GLCTNPCTIYNKL--TNCDSLLKQSSCQDDWIKSNCPASCFCRN 218
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 29.8 bits (66), Expect = 1.7
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 17/158 (10%)
Query: 340 ENGWKGPECDIPASDCQYSDCSGHGSCVE--GTCHCQSGWKGIGCQEAGCPNACNRHGTC 397
E + PEC A + S + +C G C C ++ G C
Sbjct: 2 EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHC 61
Query: 398 AFENEEYQCVCAEGWAGVD-------CNIKLEMSCNDDTDNDK-DGVTDCSDSDCCSQPV 449
+ C + G D CN + C D + D C+ ++C +
Sbjct: 62 DSQCNSAGC----LFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCD--QGCNSAECEWDGL 115
Query: 450 CSDQPHIMCLASNDPVEVLLRKQPPSVTASFYQRVKFL 487
+ LA+ + V++ P + S + ++ L
Sbjct: 116 DCAEHVPERLAAGT-LVVVVLMPPEQLRNSSFHFLREL 152
Score = 27.5 bits (60), Expect = 9.3
Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 13/97 (13%)
Query: 290 TCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYG---------GGICHCE 340
C + C + C C G +C+
Sbjct: 34 DCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCK 93
Query: 341 NGWKGPECDIPASDCQYSDCS-GHGSCVEGTCHCQSG 376
+ + CD C ++C C E +
Sbjct: 94 DHFSDGHCD---QGCNSAECEWDGLDCAEHVPERLAA 127
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/186 (13%), Positives = 43/186 (23%), Gaps = 19/186 (10%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLC-SNHGKYGGGICH--CENGWK 344
++ +C C + + ++C C G+ CH C G
Sbjct: 165 TNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCT 224
Query: 345 GPECDIPASDCQ-----------YSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNR 393
GP+ SDC C + T +G A C C
Sbjct: 225 GPK----HSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPY 280
Query: 394 HGTCAFENE-EYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSD 452
+ C + + C+ G+ + +
Sbjct: 281 NYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNV 340
Query: 453 QPHIMC 458
Q C
Sbjct: 341 QEFDGC 346
Score = 28.4 bits (62), Expect = 7.0
Identities = 20/169 (11%), Positives = 38/169 (22%), Gaps = 13/169 (7%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
S C C + + + EG + C C + E G
Sbjct: 240 SGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNY------LSTEVGSCTLV 293
Query: 348 CDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFE-----NE 402
C P ++ + + G C + + C G+G + A F+
Sbjct: 294 C--PPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFG 351
Query: 403 EYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCS 451
+ I + +T +
Sbjct: 352 SLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRD 400
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 30.5 bits (68), Expect = 1.8
Identities = 21/170 (12%), Positives = 30/170 (17%), Gaps = 6/170 (3%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGP 346
VS C G GS + + C N G P
Sbjct: 1241 VSFVCDEGFRLKGSSVSHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIP 1300
Query: 347 ECDIPASDCQYSDCSGHGSCVEG--TCHCQSGWKGI----GCQEAGCPNACNRHGTCAFE 400
+ C G + G T C S G + H +
Sbjct: 1301 YGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQ 1360
Query: 401 NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVC 450
L C ++ + S
Sbjct: 1361 FPFASPTIPINDFEFPVGTSLNYECRPGYFGKMFSISCLENLVWSSVEDN 1410
Score = 29.4 bits (65), Expect = 4.3
Identities = 24/196 (12%), Positives = 45/196 (22%), Gaps = 28/196 (14%)
Query: 286 GVSSTCPNGCSGHGSCYLGKCD----CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCEN 341
G + P G CD ++ S C +G + C
Sbjct: 839 GRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGI 898
Query: 342 GWKGPECDIPASDCQYSDCSG----HGSCVEGTCHCQSGWKGIG----CQEAG---CPNA 390
D + + G+ + C+ + G C + P
Sbjct: 899 LGHCQAPDHFLFAKLKTQTNASDFPIGTSL--KYECRPEYYGRPFSITCLDNLVWSSPKD 956
Query: 391 CNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSD------- 443
+ +C + + + ++ SC +C S
Sbjct: 957 VCKRKSCKTPPDPVNGMV-HVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNTAHWST 1015
Query: 444 ---CCSQPVCSDQPHI 456
C + C P I
Sbjct: 1016 KPPICQRIPCGLPPTI 1031
Score = 28.2 bits (62), Expect = 9.2
Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 286 GVSSTCPNGCSGHGSCYLGKCD----CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCEN 341
G + P G +G CD + S C +G + CE
Sbjct: 1742 GRHTGTPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQGNGVWSSPAPRCEL 1801
Query: 342 GWKGPECDIPASDCQYSDCSGHGSCVEG---TCHCQSGWKGIGCQEAGC 387
P + + G + C G+ +G C
Sbjct: 1802 SVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFIFC 1850
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 30.3 bits (68), Expect = 1.9
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 308 CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCV 367
C +E D PVL G+ + H E C P +C+ +
Sbjct: 410 CSSHWEVEDLGTHKPPVL-RPRGQPNQCVGHREASIHASCCHAPGLECKVKEHGIPAPQE 468
Query: 368 EGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFEN 401
+ T C+ GW GC + P + G A +N
Sbjct: 469 QVTVACEEGWTLTGC--SALPGTSHVLGAYAVDN 500
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 27.2 bits (60), Expect = 2.0
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 382 CQEAGCPNACNRHGTCAF----ENEEYQCVCAEGWAGVDC 417
C E C C + Y C CA G+ G C
Sbjct: 7 CPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 29.8 bits (66), Expect = 2.2
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 7/108 (6%)
Query: 316 DCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASD-----CQYSDCSGHGSCVEGT 370
C + C C++ G CD + + C
Sbjct: 267 VCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCN 326
Query: 371 CHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
CH + +++ ++ C G++C
Sbjct: 327 CHGHA--YDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCE 372
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.8 bits (66), Expect = 2.2
Identities = 17/167 (10%), Positives = 31/167 (18%), Gaps = 25/167 (14%)
Query: 298 HGSCYLGKCDCIDGYEGTDCSKS---VCPVLCSNHGKYGGGICHCENGWKGPECDIPASD 354
+ L +D D + V G G + + + +
Sbjct: 114 EKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNY 173
Query: 355 CQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHG------TCAFENEEYQCVC 408
++ C C C +C+ C CV
Sbjct: 174 RCWTTNRCQKMCPSTCGKRACTENNECCHPE-CLGSCSAPDNDTACVACRHYYYAGVCVP 232
Query: 409 AEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPH 455
+C +T + D S
Sbjct: 233 ---------------ACPPNTYRFEGWRCVDRDFCANILSAESSDSE 264
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 29.7 bits (66), Expect = 2.6
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 48/151 (31%)
Query: 293 NGCSGHGSCYLGKCDCIDGYEGTDCSKSVCP-VLCSNHG------KYGGGICHCENGWKG 345
N + G + + Y +V C+ H ++ +C+C++ G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 346 PECD----------------IPASDCQYSDCSGHG------------SCVEGTC-HCQSG 376
+C+ AS+C DC+G + G C +C+
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 377 WKGIGCQE-----------AGC-PNACNRHG 395
G C+ C P A + H
Sbjct: 343 TDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
Score = 29.7 bits (66), Expect = 2.6
Identities = 22/127 (17%), Positives = 31/127 (24%), Gaps = 49/127 (38%)
Query: 286 GVSSTCPNGCSGHGSC------YLGKCDCIDGYEGTDCSK-------------------S 320
V C C+GH S C+C G DC K
Sbjct: 250 AVGGRCK--CNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASE 307
Query: 321 VCPVLCSNHGKY------------GGGIC-HCENGWKGPECDI---------PASDCQYS 358
P C+ + GG C +C + G +C+ C +
Sbjct: 308 CLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPA 367
Query: 359 DCSGHGS 365
H
Sbjct: 368 AAHHHHH 374
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 29.4 bits (66), Expect = 2.6
Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 12/68 (17%)
Query: 306 CDCIDGYEGTDCSK--SVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGH 363
C G + C S C L G +C P +D + C
Sbjct: 236 CQFTFGEDSKHCPDAASTCSTLWCTGTSGGVLVCQ--------TKHFPWAD--GTSCGEG 285
Query: 364 GSCVEGTC 371
C+ G C
Sbjct: 286 KWCINGKC 293
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 29.6 bits (65), Expect = 2.6
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 3/147 (2%)
Query: 262 KWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSV 321
+ + ++ + L +T + + + EG C+
Sbjct: 424 QSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC 483
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIG 381
C G C + + D ++ + CVE C+ G+
Sbjct: 484 SSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLL 543
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVC 408
P+ C C+ + CV
Sbjct: 544 TCHGPGPDNCT---KCSHFKDGPNCVE 567
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 29.9 bits (66), Expect = 2.7
Identities = 23/126 (18%), Positives = 34/126 (26%), Gaps = 31/126 (24%)
Query: 291 CPNGCSGHGSCYLGKCD-CIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECD 349
C N C + SC + C+ G +C+K C + CHC
Sbjct: 40 CDNLCKSYSSCCHDFDELCLKTARGWECTKDRC-----GEVRNEENACHCS--------- 85
Query: 350 IPASDCQYSDCSGHGSCV---EGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQC 406
DC G C + C +S W + C F
Sbjct: 86 --------EDCLSRGDCCTNYQVVCKGESHW-----VDDDCEEIRVPECPAGFVRPPLII 132
Query: 407 VCAEGW 412
+G+
Sbjct: 133 FSVDGF 138
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 26.4 bits (58), Expect = 3.2
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 382 CQEAGCPNACNRHGTCAF----ENEEYQCVCAEGWAGVDCNIK 420
C E C C + Y C CA G+ G C K
Sbjct: 7 CPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 29.4 bits (65), Expect = 3.4
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 10/156 (6%)
Query: 292 PNGCSGHGSCYLG--KCDCIDGYEGTDCSKSVCPVL-CSNHGKYGGGIC--HCENGWKGP 346
GC+ G +C C GY T+ ++ V C+ G C C N
Sbjct: 10 NGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEG-----YCSQGCTNSEGAF 64
Query: 347 ECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQC 406
+C A D + + I
Sbjct: 65 QCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFH 124
Query: 407 VCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDS 442
E D + + N + N ++ V+ +S
Sbjct: 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 160
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.4 bits (66), Expect = 3.4
Identities = 18/106 (16%), Positives = 22/106 (20%), Gaps = 10/106 (9%)
Query: 360 CSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVD--- 416
C S S + N C Y + D
Sbjct: 36 CLAWASA---QAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNY 92
Query: 417 CNIKLEMSCNDDTDNDKD----GVTDCSDSDCCSQPVCSDQPHIMC 458
C +E D D D D G T S+ P C
Sbjct: 93 CEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADC 138
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 29.1 bits (64), Expect = 3.5
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 371 CHCQSGWKGIGCQEAGCPNACNRHG-TCAFENEEYQCVCAEGWAGVDCN 418
+ + I E CN H C+ QC C G DC
Sbjct: 252 ENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCG 300
>1jia_A Phospholipase A2; agkistrodon haLys pallas; 2.13A {Gloydius halys}
SCOP: a.133.1.2 PDB: 1b4w_A 1c1j_A*
Length = 122
Score = 27.7 bits (61), Expect = 4.3
Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 9/87 (10%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIG 381
Y C+C +G +G D C DC C E C W
Sbjct: 11 KMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDC-----CYEKVTGCDPKWDDYT 65
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVC 408
C C ++ C C
Sbjct: 66 YSWKNGTIVCGGDDPC----KKEVCEC 88
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 28.6 bits (61), Expect = 5.6
Identities = 23/175 (13%), Positives = 39/175 (22%), Gaps = 9/175 (5%)
Query: 289 STCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPEC 348
T + G + +C P G CH G K
Sbjct: 291 GTVDVNWAAAGPGPVAFDHKAHEGFVGNCVTCHHPTQTGGSLAACGVACHTTTGSKDGNF 350
Query: 349 D-------IPASDCQYSDCSGHGSCVEGTCH-CQSGWKGIGCQEAGCPNACNRHGTCAFE 400
C + C C + + + C C+ G
Sbjct: 351 VTTAQSAHQLGVTTSCVGCHTTQANARKECAGCHAPMQKTALSQNSC-IQCHEAGFPTSG 409
Query: 401 NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPH 455
+ E A K E +N + +T + + ++ PH
Sbjct: 410 TQTLGKEEREATAAKILAAKDEKPKTVPLENVPEKLTLNYMDEKGDEWQAAEFPH 464
>3vbz_A Phospholipase A2 homolog, taipoxin beta chain; phospholipase A2
fold, PLA2 fold, neurotoxin, binding; 1.76A {Oxyuranus
scutellatus scutellatus} PDB: 3vc0_A
Length = 118
Score = 27.3 bits (60), Expect = 6.2
Identities = 20/92 (21%), Positives = 24/92 (26%), Gaps = 16/92 (17%)
Query: 373 CQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDND 432
C G G G C H C Y G C L
Sbjct: 27 CYCGTVGRGTPVDDLDRCCQVHDEC------YATAEKHG-----CYPSLTTY----QWEC 71
Query: 433 KDGVTDCSDSDCCSQPVCS-DQPHIMCLASND 463
+ +C+ C VC+ D CLA D
Sbjct: 72 RQVGNECNSKTQCEVFVCACDLAAAKCLAQED 103
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 25.5 bits (56), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 394 HGTCAF--ENEEYQCVCAEGWAGVDC 417
HGTC F + ++ CVC G+ G C
Sbjct: 18 HGTCRFLVQEDKPACVCHSGYVGARC 43
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 28.6 bits (63), Expect = 6.9
Identities = 28/184 (15%), Positives = 43/184 (23%), Gaps = 16/184 (8%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPE 347
P G + +C G + + S C G + G C+ +
Sbjct: 523 LEDFPYGTTVTYTCNPG-PERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQ 581
Query: 348 CDIPASDCQYSDCSGHGSCVEG---TCHCQSGWKGIGCQEAGCPNACNRHG---TCAFEN 401
C Y T C SG+ G + C C E
Sbjct: 582 CSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKET 641
Query: 402 EEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSD---------CCSQPVCSD 452
++ + + SC D C D++ C C
Sbjct: 642 CQHVRQSLQELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHP 701
Query: 453 QPHI 456
P I
Sbjct: 702 PPVI 705
>1m8r_A Phospholipase A2; phopholipase A2-metal cation complex, three
alpha, two beta, hydrolase; 1.90A {Gloydius halys} SCOP:
a.133.1.2 PDB: 1m8s_A 1bk9_A* 1psj_A 1ijl_A 1pp2_R
Length = 124
Score = 27.2 bits (60), Expect = 7.5
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 26/98 (26%)
Query: 371 CHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLE---MSCND 427
C+C GW G G + C H C Y V C+ K++ S
Sbjct: 26 CYC--GWGGQGRPQDATDRCCFVHDCC------YGKV-------TGCDPKMDVYSFSE-- 68
Query: 428 DTDNDKDGVTDCSDSDCCSQPVCS-DQPHIMCLASNDP 464
++G C D C + +C D+ +C N
Sbjct: 69 -----ENGDIVCGGDDPCKKEICECDRAAAICFRDNLN 101
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 27.9 bits (63), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 349 DIPASDCQYSDCSGHGSCVEGT 370
D +D +DC+GHG+ V GT
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGT 79
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 25.5 bits (56), Expect = 7.7
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 386 GCP----NACNRHGTCAF--ENEEYQCVCAEGWAGVDC 417
GCP C G C + Y C C G++G C
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>1zlb_A Hypotensive phospholipase A2; Asp49-PLA2, toxin, snake venom,
hydrolase; 0.97A {Bothrops jararacussu} SCOP: a.133.1.2
PDB: 1umv_X 1zl7_A 1z76_A* 1u73_A* 1vap_A 3r0l_A
Length = 122
Score = 27.0 bits (59), Expect = 7.8
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 20/95 (21%)
Query: 371 CHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTD 430
C+C G G G C H C Y V CN K++ T
Sbjct: 26 CYC--GLGGQGQPTDATDRCCFVHDCC------YGKV-------TGCNPKIDSY----TY 66
Query: 431 NDKDGVTDCSDSDCCSQPVCS-DQPHIMCLASNDP 464
+ K+G C + C + +C D+ C N
Sbjct: 67 SKKNGDVVCGGDNPCKKQICECDRVATTCFRDNKD 101
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 27.8 bits (61), Expect = 8.2
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 391 CNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVC 450
C+ H C + C C + G + + + G S
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTG-NGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFEN 73
Query: 451 SD 452
+D
Sbjct: 74 TD 75
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 25.6 bits (56), Expect = 8.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 391 CNRHGTCAF--ENEEYQCVCAEGWAGVDC 417
C G C + ++Y C C G+ G C
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERC 42
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars,
hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A
{Daboia russellii pulchella} SCOP: a.133.1.2 PDB: 1cl5_A
1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A* 1q7a_A
1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A* 1tg4_A
1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ...
Length = 121
Score = 26.9 bits (59), Expect = 9.1
Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 26/98 (26%)
Query: 371 CHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLE---MSCND 427
C+C GW G G + C H C Y + DCN K +
Sbjct: 26 CYC--GWGGKGTPKDATDRCCFVHDCC------YGNL-------PDCNPKSDRYKYKR-- 68
Query: 428 DTDNDKDGVTDCSDSDCCSQPVCS-DQPHIMCLASNDP 464
+G C C +C D+ +C N
Sbjct: 69 -----VNGAIVCEKGTSCENRICECDKAAAICFRQNLN 101
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 27.7 bits (61), Expect = 9.5
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 20/108 (18%)
Query: 286 GVSSTCPNG--------CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGIC 337
G S+ C + + +G CY GKC + C L C
Sbjct: 293 GRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQ---------CIALFGPGATVSQDAC 343
Query: 338 HCEN--GWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383
N G C + + + C C S C
Sbjct: 344 FQFNREGNHYGYCRKE-QNTKIACEPQDVKCGRLYCFPNSPENKNPCN 390
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.428
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,805,311
Number of extensions: 471823
Number of successful extensions: 2734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 507
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)