RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12789
(514 letters)
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 42.1 bits (99), Expect = 2e-06
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 347 ECDI---PASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQ 383
ECD + Q G G C G C C G++G CQ
Sbjct: 1 ECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 40
Score = 35.1 bits (81), Expect = 8e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 294 GCSGHGSCYLGKCDCIDGYEGTDCS 318
G G G C+ GKC C G+EG+ C
Sbjct: 16 GGPGRGLCFCGKCRCHPGFEGSACQ 40
Score = 34.4 bits (79), Expect = 0.001
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 310 DGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPEC 348
+ Y G C G G C C G++G C
Sbjct: 8 ERYNGQVCG-------GPGRGLCFCGKCRCHPGFEGSAC 39
Score = 27.8 bits (62), Expect = 0.25
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 391 CNRHGTCAFENEEYQCVCAEGWAGVDC 417
G C +C C G+ G C
Sbjct: 17 GPGRGLC----FCGKCRCHPGFEGSAC 39
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 36.7 bits (85), Expect = 3e-04
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 353 SDCQYSD---CSGHGSCVEGTCHC-QSGWKGIGCQEAGCPN 389
C S+ CSG G C G+C C Q G G C++ CP
Sbjct: 3 DTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEK--CPT 41
Score = 32.4 bits (74), Expect = 0.006
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 295 CSGHGSCYLGKCDCID-GYEGTDCSKSVCP 323
CSG G C G C CI G G C K CP
Sbjct: 13 CSGRGKCECGSCVCIQPGSYGDTCEK--CP 40
Score = 28.6 bits (64), Expect = 0.19
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 324 VLCSNHGKYGGGICHC-ENGWKGPECDI 350
+LCS GK G C C + G G C+
Sbjct: 11 LLCSGRGKCECGSCVCIQPGSYGDTCEK 38
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 33.1 bits (76), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
+ C G C EY C C EG+ G +C +
Sbjct: 5 TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36
Score = 30.4 bits (69), Expect = 0.035
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
C+ S C G C +G TC C G++G C+
Sbjct: 2 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
Score = 25.4 bits (56), Expect = 2.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDC 317
+S C N C Y C C++G+EG +C
Sbjct: 5 TSPCQNQGKCKDGLGEY--TCTCLEGFEGKNC 34
Score = 25.0 bits (55), Expect = 3.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 326 CSNHG----KYGGGICHCENGWKGPECDI 350
C N G G C C G++G C++
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 33.1 bits (76), Expect = 0.004
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
N C G+C + Y+C C G+ G +C +
Sbjct: 8 SNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 30.8 bits (70), Expect = 0.023
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
C+ + C GSC + C C G++G C+
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.4 bits (56), Expect = 1.8
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDC 317
S+ C NG C + Y +C C G+EG +C
Sbjct: 8 SNPCLNGGSCKDDINSY--ECWCPFGFEGKNC 37
Score = 25.4 bits (56), Expect = 1.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 326 CSNHG----KYGGGICHCENGWKGPECDI 350
C N G C C G++G C++
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 32.7 bits (75), Expect = 0.006
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
N C TC + E+QC+C G+ GV C +
Sbjct: 6 SNPCQNDATCLDQIGEFQCICMPGYEGVHCEV 37
Score = 30.8 bits (70), Expect = 0.023
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
+C + C +C++ C C G++G+ C+
Sbjct: 3 ECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE 36
Score = 25.0 bits (55), Expect = 2.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDC 317
S+ C N C + +C C+ GYEG C
Sbjct: 6 SNPCQNDATCLDQIGEF--QCICMPGYEGVHC 35
Score = 24.6 bits (54), Expect = 4.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 326 CSNHG----KYGGGICHCENGWKGPECDI 350
C N + G C C G++G C++
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCEV 37
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 31.7 bits (72), Expect = 0.009
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 360 CSGHGSCVEGTCHCQSGWKGIGCQ 383
CSGHG C G C C S W G C
Sbjct: 5 CSGHGQCSCGDCLCDSDWTGYYCN 28
Score = 30.9 bits (70), Expect = 0.019
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 295 CSGHGSCYLGKCDCIDGYEGTDC 317
CSGHG C G C C + G C
Sbjct: 5 CSGHGQCSCGDCLCDSDWTGYYC 27
Score = 29.4 bits (66), Expect = 0.056
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 324 VLCSNHGKYGGGICHCENGWKGPECD 349
+CS HG+ G C C++ W G C+
Sbjct: 3 EMCSGHGQCSCGDCLCDSDWTGYYCN 28
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 32.0 bits (73), Expect = 0.009
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 385 AGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
+ N C G C ++C C +G+ G C I
Sbjct: 7 SLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI 41
Score = 28.5 bits (64), Expect = 0.15
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
EC + A+ C++ G C+ C C G+ G C+
Sbjct: 5 ECSLGANPCEH-----AGKCINTLGSFECQCLQGYTGPRCE 40
Score = 26.2 bits (58), Expect = 1.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 281 IKEAEGVSSTCPNG--CSGHGSCYLGKCDCIDGYEGTDC 317
+ E ++ C + C + +C C+ GY G C
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSF--ECQCLQGYTGPRC 39
Score = 25.1 bits (55), Expect = 3.0
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 326 CSNHG----KYGGGICHCENGWKGPECDI 350
C + G G C C G+ GP C+I
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEI 41
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 31.7 bits (72), Expect = 0.015
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 382 CQEAGCPNACN----RHGTCAFENEEYQCVCAEGWAGVDCNI 419
C + C HGTC + C C GW G C
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR 43
Score = 30.2 bits (68), Expect = 0.050
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
C C GHG+C++G +C C+SGW+G CQ
Sbjct: 3 LVLPLEHPCASLCC-GHGTCIDGIGSFSCDCRSGWEGRFCQR 43
Score = 25.9 bits (57), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 291 CPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSV 321
C + C GHG+C G CDC G+EG C + V
Sbjct: 11 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREV 45
Score = 24.8 bits (54), Expect = 4.0
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 331 KYGGGICHCENGWKGPECDI 350
G C C +GW+G C
Sbjct: 24 GIGSFSCDCRSGWEGRFCQR 43
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 31.2 bits (71), Expect = 0.018
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
+ C G+C + + Y C C + G +C
Sbjct: 7 SSPCQNGGSCKDQLQSYICFCLPAFEGRNC 36
Score = 30.0 bits (68), Expect = 0.041
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
C S C GSC + C C ++G C+
Sbjct: 4 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37
Score = 25.0 bits (55), Expect = 2.7
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDC 317
SS C NG C Y C C+ +EG +C
Sbjct: 7 SSPCQNGGSCKDQLQSY--ICFCLPAFEGRNC 36
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 30.8 bits (70), Expect = 0.020
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
+ C +G C + E+QC C G+ G C
Sbjct: 5 SSPCLHNGRCLDKINEFQCECPTGFTGHLC 34
Score = 29.6 bits (67), Expect = 0.063
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 354 DCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQ 383
+C S C +G C++ C C +G+ G CQ
Sbjct: 2 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35
Score = 24.6 bits (54), Expect = 3.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 288 SSTCPNG--CSGHGSCYLGKCDCIDGYEGTDC 317
SS C + C + + +C+C G+ G C
Sbjct: 5 SSPCLHNGRCLDKINEF--QCECPTGFTGHLC 34
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 34.3 bits (77), Expect = 0.023
Identities = 28/197 (14%), Positives = 44/197 (22%), Gaps = 9/197 (4%)
Query: 292 PNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCEN--GWKGPECD 349
+GHG+ G VL N I + +
Sbjct: 63 SRDGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRN 122
Query: 350 IPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCA 409
P G S + + G+ A N + V A
Sbjct: 123 CPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGA 182
Query: 410 EGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSD-QPHIMCLASNDPVEVL 468
+ S D D ++ S S PH+ LA+
Sbjct: 183 SDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAA------Y 236
Query: 469 LRKQPPSVTASFYQRVK 485
L + AS + +
Sbjct: 237 LMTLGKTTAASACRYIA 253
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 30.1 bits (68), Expect = 0.042
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
+C++ G C Y C C G+ G +C
Sbjct: 6 DMSCSKQGECLETIGNYTCSCYPGFYGPEC 35
Score = 29.0 bits (65), Expect = 0.12
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 353 SDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
+ CQ CS G C+E TC C G+ G C+
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 37
Score = 25.1 bits (55), Expect = 2.9
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 292 PNGCSGHGSCYLG----KCDCIDGYEGTDC 317
CS G C C C G+ G +C
Sbjct: 6 DMSCSKQGECLETIGNYTCSCYPGFYGPEC 35
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 30.1 bits (68), Expect = 0.047
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 353 SDCQYSDCSGHGSCVEG----TCHCQSGWKGIGCQEA 385
+ C + CSGHG CVE TC C G+ G+ C++
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI 38
Score = 29.7 bits (67), Expect = 0.054
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 PNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
+C+ HG C Y C C G++G+ C
Sbjct: 6 NTSCSGHGECVETINNYTCKCDPGFSGLKC 35
Score = 25.5 bits (56), Expect = 2.2
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 292 PNGCSGHGSCYLG----KCDCIDGYEGTDCSKSV 321
CSGHG C C C G+ G C + V
Sbjct: 6 NTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 33.5 bits (76), Expect = 0.058
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 282 KEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCEN 341
+EAE V++ CS HG +L DG G C C
Sbjct: 10 EEAEAVANI---NCSEHGRAFL------DGIISE-----------------GSPKCECNT 43
Query: 342 GWKGPECDIPASDC 355
+ GP+C C
Sbjct: 44 CYTGPDCSEKIQGC 57
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 30.0 bits (67), Expect = 0.082
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 382 CQEAGCPN-ACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDK 433
++ C N Y C C G+ G C + M + ++
Sbjct: 9 KEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAEE 61
Score = 26.5 bits (58), Expect = 1.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 350 IPASDCQYSDCSGHGSCVEG---------TCHCQSGWKGIGCQE 384
+ ++ + + C G C C CQ G+ G C E
Sbjct: 4 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47
Score = 25.3 bits (55), Expect = 4.2
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 316 DCSKSVCP-----VLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSG 362
+ K+ C + + +C C+ G+ G C +
Sbjct: 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59
Score = 25.0 bits (54), Expect = 5.5
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 280 LIKEAEGVSSTCPNGCSGHGSCYLGK-----CDCIDGYEGTDCSKSVCP 323
L+K AE + C NG L C C G+ G C+++V
Sbjct: 3 LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM 51
>d1n2za_ c.92.2.2 (A:) Vitamin B12 binding protein BtuF {Escherichia
coli [TaxId: 562]}
Length = 245
Score = 32.7 bits (73), Expect = 0.086
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 75 GPIGVTDFSQVPDSFEEAPSVVELKDFN-SLISATIPSFQFWNSDFNIEQSAFFRFNF 131
P+GV+ +S P ++ V + N I A P N E+ +
Sbjct: 22 TPVGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASL 79
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 28.7 bits (64), Expect = 0.21
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 388 PNACNRHGTCAFENE--EYQCVCAEGWAGVDCNIK 420
C G C Y C C G++G C +
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
Score = 24.8 bits (54), Expect = 5.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 353 SDCQYSDCSGHGSCVEG------TCHCQSGWKGIGCQ 383
C G C+ TC+C G+ G CQ
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 29.6 bits (65), Expect = 0.77
Identities = 21/204 (10%), Positives = 39/204 (19%), Gaps = 20/204 (9%)
Query: 319 KSVCPVLCSNHGKYGG-GICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGW 377
+ PVL N G+ G E E + + +G GW
Sbjct: 93 NASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGW 152
Query: 378 KGIGCQEAGCPNACNRHGTCAFENEEYQ-----CVCAEGWAGVDCNIKLEMSCNDDTDND 432
P + V G D +
Sbjct: 153 ALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLE 212
Query: 433 KDGVTDCSDSDCCSQPVCSDQPHIMCLASNDPVEVLLRKQPPSVTASFYQRVKFLVEENS 492
V + + M + + + + R + L+ S
Sbjct: 213 AILVVPNN--------AHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGS 264
Query: 493 V------QSYAHMDEYSESEFWNS 510
+ + F +
Sbjct: 265 RLEVTRCVTSVKWARLDSAPFTDR 288
>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor
receptor Cys-rich domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 150
Score = 28.8 bits (63), Expect = 0.97
Identities = 20/145 (13%), Positives = 34/145 (23%), Gaps = 8/145 (5%)
Query: 291 CPNGCSGHGSCYLGKCDCIDGYE--GTDCSKSVCPVLCSNHGKYGGGIC---HCENGWKG 345
CP C + Y T+ + +CP C C C
Sbjct: 3 CPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSA 62
Query: 346 PECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGC--QEAGCPNACNRHGTCAF-ENE 402
P+ D C++ +G + A +A + +
Sbjct: 63 PDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDG 122
Query: 403 EYQCVCAEGWAGVDCNIKLEMSCND 427
E C G+ + C
Sbjct: 123 ECMQECPSGFIRNGSQSMYCIPCEG 147
>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 28.7 bits (62), Expect = 1.2
Identities = 14/143 (9%), Positives = 27/143 (18%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIG 381
C C ++ +G C+ A C +
Sbjct: 9 CAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLA 68
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSD 441
C C H G ++ + +
Sbjct: 69 CLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLV 128
Query: 442 SDCCSQPVCSDQPHIMCLASNDP 464
+Q V ++ C + P
Sbjct: 129 CPPNNQEVTAEDGTQRCEKCSKP 151
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 26.4 bits (58), Expect = 1.2
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 384 EAGCP----NACNRHGTCAFENE--EYQCVCAEGWAGVDC 417
++ CP C G C + +Y C C G+ G C
Sbjct: 1 DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40
Score = 26.4 bits (58), Expect = 1.3
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 349 DIPASDCQYSDCSGHGSCVEG------TCHCQSGWKGIGCQEA 385
D C G C+ C+C G+ G CQ
Sbjct: 1 DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli
[TaxId: 562]}
Length = 288
Score = 29.0 bits (63), Expect = 1.3
Identities = 30/266 (11%), Positives = 62/266 (23%), Gaps = 40/266 (15%)
Query: 182 FAVYGRRNVAPSITNYDFSEFIKGGKINQKRSVDSILGHDDGVSFTSHISNQHHTLSKRS 241
+AV V +++N + + KG I + GVS S
Sbjct: 4 YAV-----VLKTLSNPFWVDMKKG--IEDE-------AKTLGVSVDIFASPSEG------ 43
Query: 242 DQTTETNFVEVQILKFLMSGKWFLSVYNDDVKTHEIKL------LIKEAEGVSSTCPNGC 295
D ++ E + G F + + ++ + L+ E +
Sbjct: 44 DFQSQLQLFE-DLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKA 102
Query: 296 SGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDC 355
G+ ++ + G +G + GG G G +
Sbjct: 103 GGNVEAFVTTDNVAVGAKGASF--------IIDKLGAEGGEVAIIEGKAGNASGEARRNG 154
Query: 356 QYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEG---W 412
+ A N + + + +
Sbjct: 155 ATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVAN 214
Query: 413 AGVDCNIKLEMSCNDDTDNDKDGVTD 438
AG + + D + V
Sbjct: 215 AGKTGKVLV--VGTDGIPEARKMVEA 238
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 25.6 bits (56), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 388 PNACNRHGTC--AFENEEYQCVCAEGWAGVDCNI 419
C GTC A ++ C C EG+AG C I
Sbjct: 3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36
Score = 24.4 bits (53), Expect = 4.2
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 355 CQYSDCSGHGSCVEG------TCHCQSGWKGIGCQ 383
C C G+C + C C G+ G C+
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 35
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 50
Score = 25.6 bits (56), Expect = 2.3
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 394 HGTCAF--ENEEYQCVCAEGWAGVDC 417
G C F + CVC EG+ G C
Sbjct: 18 KGRCRFVVAEQTPSCVCDEGYIGARC 43
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 49
Score = 25.6 bits (56), Expect = 2.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 394 HGTCAF--ENEEYQCVCAEGWAGVDC 417
HGTC F + ++ CVC G+ G C
Sbjct: 17 HGTCRFLVQEDKPACVCHSGYVGARC 42
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 28.6 bits (61), Expect = 2.4
Identities = 17/179 (9%), Positives = 36/179 (20%), Gaps = 6/179 (3%)
Query: 288 SSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWK--G 345
TC + +G+ D +S + + CH
Sbjct: 277 IDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIKPTKSD 336
Query: 346 PECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQ 405
+C + D + + + + P +
Sbjct: 337 AQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVI 396
Query: 406 CVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCLASNDP 464
A+ + + T G + + + H AS P
Sbjct: 397 GSIAKEYQPSEFPH----RKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTP 451
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 28.0 bits (61), Expect = 2.5
Identities = 9/97 (9%), Positives = 13/97 (13%), Gaps = 2/97 (2%)
Query: 324 VLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSC--VEGTCHCQSGWKGIG 381
V C G + Y + G C
Sbjct: 54 VDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVPF 113
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C E A + +
Sbjct: 114 CNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGP 150
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 418
Score = 27.7 bits (61), Expect = 3.5
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 36 QRVKFLVEENSVQSYAHMDEYSERYFNSISNVTAGVSSS 74
Q +F EE + H E YF+ I+ SS+
Sbjct: 377 QEREFAAEERGYTATKHQREVGAGYFDRIATTVDPNSST 415
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 6/122 (4%)
Query: 341 NGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFE 400
N G + Q + + HG+ V GT + +G+ PN
Sbjct: 43 NNVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEGVV---GVMPNQNANIHIVKVF 99
Query: 401 NEEYQCVCAEGWAGVDCNIKLEMSCNDDTDNDKDGVTDCSDSDCCSQPVCSDQPHIMCLA 460
NE + A +D + + G + + ++ + + ++ A
Sbjct: 100 NEAGWGYSSSLVAAIDTCVNSGGAN---VVTMSLGGSGSTTTERNALNTHYNNGVLLIAA 156
Query: 461 SN 462
+
Sbjct: 157 AG 158
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 24.4 bits (53), Expect = 5.2
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 389 NACNRHGTCAFENEEYQCVCAEGWAG 414
+ C+ H C + C C + G
Sbjct: 7 HQCSVHAECRDYATGFCCRCVANYTG 32
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain)
{Escherichia coli [TaxId: 562]}
Length = 271
Score = 27.1 bits (58), Expect = 5.3
Identities = 11/191 (5%), Positives = 41/191 (21%), Gaps = 3/191 (1%)
Query: 190 VAPSITNYDFSEFIKG-GKINQKRSVDSILGHDDGVSFTSHISNQHHTLSKRSD--QTTE 246
S+ + S+ + + ++ + + + H+ L++R
Sbjct: 6 ATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 65
Query: 247 TNFVEVQILKFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKC 306
+ I + +T ++ +G + +
Sbjct: 66 PLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLA 125
Query: 307 DCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSC 366
+ L N + + G + + + + +
Sbjct: 126 GPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVAN 185
Query: 367 VEGTCHCQSGW 377
+
Sbjct: 186 DQMALGAMRAI 196
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 27.1 bits (59), Expect = 6.0
Identities = 10/73 (13%), Positives = 17/73 (23%)
Query: 325 LCSNHGKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVEGTCHCQSGWKGIGCQE 384
+HG + + A + + GHG V + K
Sbjct: 209 SVRDHGLHLTVHAGEDATLPNLNTLYTAINILNVERIGHGIRVSESDELIELVKKKDILL 268
Query: 385 AGCPNACNRHGTC 397
CP +
Sbjct: 269 EVCPISNLLLNNV 281
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 24.3 bits (53), Expect = 6.2
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIG 381
C+ D HG C+ C C G+ G
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAG 38
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 24.0 bits (52), Expect = 6.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 351 PASDCQYSDCSGHGSCVEG-----TCHC-QSGWKGIGCQ 383
P + C Y C G CV C C ++G+ G C
Sbjct: 1 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
Score = 24.0 bits (52), Expect = 7.5
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 316 DCSKSVCP--VLCSNHGKYGGGICHC-ENGWKGPECDIP 351
C C +C G C C G+ GP C IP
Sbjct: 4 PCCYYPCQHQGICVRFG-LDRYQCDCTRTGYSGPNCTIP 41
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu
(Bothrops jararacussu) [TaxId: 8726]}
Length = 122
Score = 25.7 bits (56), Expect = 7.0
Identities = 12/45 (26%), Positives = 14/45 (31%)
Query: 295 CSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHC 339
C H CY C + SK V+C IC C
Sbjct: 44 CFVHDCCYGKVTGCNPKIDSYTYSKKNGDVVCGGDNPCKKQICEC 88
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 26.1 bits (56), Expect = 9.9
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 359 DCSGHGSCVEGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVC 408
C+ C+ TC C + + R A+ ++ +
Sbjct: 43 SCASDEECMYSTCQC---LDEMAPDSDEEADPYTRKKRFAYYSQGAKKGL 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.428
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,997,699
Number of extensions: 102445
Number of successful extensions: 714
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 207
Length of query: 514
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 425
Effective length of database: 1,185,626
Effective search space: 503891050
Effective search space used: 503891050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)