Query psy12790
Match_columns 98
No_of_seqs 120 out of 704
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:42:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0965|consensus 99.6 5.4E-16 1.2E-20 134.8 3.2 80 13-95 898-985 (988)
2 PF01585 G-patch: G-patch doma 99.5 1.1E-14 2.4E-19 86.6 4.1 44 20-67 1-45 (45)
3 KOG4368|consensus 99.5 1.4E-14 3.1E-19 123.6 3.3 76 15-91 681-756 (757)
4 smart00443 G_patch glycine ric 99.4 2.5E-13 5.3E-18 80.6 4.0 45 18-66 1-46 (47)
5 KOG2809|consensus 99.1 1.1E-10 2.3E-15 93.9 3.7 49 16-68 21-70 (326)
6 KOG2184|consensus 98.8 2.1E-09 4.6E-14 94.0 2.9 44 19-66 114-158 (767)
7 PF12656 G-patch_2: DExH-box s 98.7 8.8E-09 1.9E-13 67.6 2.8 51 15-69 24-75 (77)
8 KOG2384|consensus 98.4 1.4E-07 2.9E-12 72.4 2.3 49 17-69 124-173 (223)
9 KOG3673|consensus 98.3 2.2E-07 4.8E-12 80.3 2.4 45 20-68 82-127 (845)
10 KOG2185|consensus 98.3 3.4E-07 7.4E-12 76.3 2.0 33 20-52 296-329 (486)
11 KOG1994|consensus 98.1 1.8E-06 3.8E-11 67.6 2.8 51 13-67 73-127 (268)
12 KOG1996|consensus 98.1 3.5E-06 7.6E-11 68.3 4.0 38 22-63 213-251 (378)
13 KOG0154|consensus 98.0 2.8E-06 6E-11 71.5 2.4 49 15-67 506-555 (573)
14 KOG4315|consensus 97.0 0.00055 1.2E-08 57.4 2.9 48 15-67 148-196 (455)
15 KOG2138|consensus 94.8 0.016 3.5E-07 51.6 1.9 20 20-39 147-167 (883)
16 KOG1994|consensus 88.1 0.27 5.9E-06 38.9 1.4 45 20-68 37-82 (268)
17 KOG0524|consensus 46.6 11 0.00023 31.1 1.2 30 46-76 139-168 (359)
18 PF15337 Vasculin: Vascular pr 27.1 35 0.00075 23.6 1.1 11 24-34 12-22 (97)
19 PF08373 RAP: RAP domain; Int 25.9 41 0.00089 19.5 1.1 19 16-34 15-33 (58)
20 PF08648 DUF1777: Protein of u 25.1 51 0.0011 23.7 1.7 21 25-45 127-149 (180)
21 KOG4779|consensus 20.7 90 0.002 20.8 2.1 23 25-47 25-50 (82)
No 1
>KOG0965|consensus
Probab=99.59 E-value=5.4e-16 Score=134.83 Aligned_cols=80 Identities=38% Similarity=0.597 Sum_probs=67.1
Q ss_pred CCCCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC-------CchhHHHHHhHHHHHH
Q psy12790 13 SGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL-------NDPYENFRKSKKQAFI 84 (98)
Q Consensus 13 ~~~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~-------~d~~e~~rk~~~~~f~ 84 (98)
..+..|.++|+||+||+||||+ |.|||..++||.+||....++. +..|+|.+. +|.|++|||+||.+|+
T Consensus 898 yke~KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~---~g~G~G~s~pael~peDdeYeayrKRMMLaYr 974 (988)
T KOG0965|consen 898 YKEQKLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGS---LGWGWGGSQPAELQPEDDEYEAYRKRMMLAYR 974 (988)
T ss_pred HHHhhccccchHHHHHHHhCccccccccccCcccccchhhccccc---CCcccccCCccccCchhhHHHHHHHHHHHhhh
Confidence 3467899999999999999999 9999999999999999876664 358888763 7899999999999999
Q ss_pred HHHHHHHHhhc
Q psy12790 85 SRMKERQEHTR 95 (98)
Q Consensus 85 ~r~k~r~~~~~ 95 (98)
.|---..+.+|
T Consensus 975 fRPNPLnNPRR 985 (988)
T KOG0965|consen 975 FRPNPLNNPRR 985 (988)
T ss_pred cCCCcCCCccc
Confidence 98654444433
No 2
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.52 E-value=1.1e-14 Score=86.60 Aligned_cols=44 Identities=41% Similarity=0.782 Sum_probs=38.5
Q ss_pred CCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccC
Q psy12790 20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVS 67 (98)
Q Consensus 20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~ 67 (98)
+++||++||++|||+ |+|||++.+||++||.+. .+. .+.|||+.
T Consensus 1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~-~~~---~~~GlG~~ 45 (45)
T PF01585_consen 1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVK-KKK---DRKGLGAE 45 (45)
T ss_pred CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEe-eEc---CCccccCC
Confidence 478999999999999 999999999999999984 443 47899973
No 3
>KOG4368|consensus
Probab=99.48 E-value=1.4e-14 Score=123.57 Aligned_cols=76 Identities=70% Similarity=1.170 Sum_probs=71.2
Q ss_pred CCCCCCCCHHHHHHHhcCCCCCCCCCCCCccccceecceeeccCCCcceeccCCCchhHHHHHhHHHHHHHHHHHHH
Q psy12790 15 VEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRKSKKQAFISRMKERQ 91 (98)
Q Consensus 15 ~~~i~~~n~G~kmL~KMGW~G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~~d~~e~~rk~~~~~f~~r~k~r~ 91 (98)
...|.++|+|.+||.||||.|.|||..++||.+||...++++...-..|+|... |+|++|||+++.+|.+|++.+.
T Consensus 681 s~~lse~NKGhQml~KMGWsG~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l-DP~E~FRKnK~g~f~~Rm~~rd 756 (757)
T KOG4368|consen 681 SAPLGEENKGHQMLVKMGWSGSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL-DPYENFRKNKSYSFIARMKARD 756 (757)
T ss_pred CCccccccchhhhHhhcCcccCCcccccccccCcccCccccchhhhhcccCccc-CcHHHHHHhhchhhhhcccccC
Confidence 345999999999999999999999999999999999999999888889999988 9999999999999999998764
No 4
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.41 E-value=2.5e-13 Score=80.59 Aligned_cols=45 Identities=47% Similarity=0.897 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceecc
Q psy12790 18 LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGV 66 (98)
Q Consensus 18 i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~ 66 (98)
++++++|++||.+|||+ |.|||++.+||++||.+. .+. .+.|||+
T Consensus 1 ~~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~-~~~---~~~GlG~ 46 (47)
T smart00443 1 ISTSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAE-IKK---DRKGLGA 46 (47)
T ss_pred CCcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEe-ecc---CCcCcCC
Confidence 46789999999999999 999999999999999974 442 4789986
No 5
>KOG2809|consensus
Probab=99.06 E-value=1.1e-10 Score=93.93 Aligned_cols=49 Identities=39% Similarity=0.710 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC
Q psy12790 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL 68 (98)
Q Consensus 16 ~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~ 68 (98)
-.++++.+|++||++|||+ |.|||++.||++.||.+. ++ + +..|||++.
T Consensus 21 w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs-~K--~-d~~GLGa~~ 70 (326)
T KOG2809|consen 21 WSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVS-LK--N-DTLGLGADK 70 (326)
T ss_pred hcccchHHHHHHHHHcCCccCCcccccccCCccceEEE-ec--c-CCcccCccc
Confidence 3568899999999999999 999999999999999974 54 3 468999975
No 6
>KOG2184|consensus
Probab=98.81 E-value=2.1e-09 Score=93.98 Aligned_cols=44 Identities=39% Similarity=0.730 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceecc
Q psy12790 19 DESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGV 66 (98)
Q Consensus 19 ~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~ 66 (98)
...+||.+||++|||+ |.|||++.|||++||+++ +|.+ +.|+|+
T Consensus 114 ~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq-~Rp~---rgg~Ga 158 (767)
T KOG2184|consen 114 GTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQ-LRPG---RGGLGA 158 (767)
T ss_pred cccchhHHHHHHcCCccccccCccccccccHHhcc-cCcc---Cccccc
Confidence 5789999999999999 999999999999999995 8864 789997
No 7
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.71 E-value=8.8e-09 Score=67.60 Aligned_cols=51 Identities=25% Similarity=0.506 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCCC
Q psy12790 15 VEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN 69 (98)
Q Consensus 15 ~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~~ 69 (98)
...++.+.||..||.-|||+ |+++|++.++.+.|+... .|.. +.|||++..
T Consensus 24 Y~~vPVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~-~Rp~---~lGLGA~~~ 75 (77)
T PF12656_consen 24 YEAVPVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPK-RRPK---GLGLGAKPA 75 (77)
T ss_pred hhhCCHHHHHHHHHHHcCCCCCCCCCCCcccccCccccc-cccc---CcCCCcCCC
Confidence 34677889999999999999 999999999999999874 6643 799998753
No 8
>KOG2384|consensus
Probab=98.41 E-value=1.4e-07 Score=72.44 Aligned_cols=49 Identities=31% Similarity=0.630 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCCC
Q psy12790 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN 69 (98)
Q Consensus 17 ~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~~ 69 (98)
.|+.+|+|+++|-+.||+ +.|||.+++|+..||.+ +..+ ++.|||++..
T Consensus 124 ~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrT--vlkk--dr~GLG~e~~ 173 (223)
T KOG2384|consen 124 LIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRT--VLKK--DRIGLGTEID 173 (223)
T ss_pred cCCCCCchHHHHHhcCCCcccCCCccccCcccchhH--HHhh--cccccchhhc
Confidence 468999999999999999 99999999999999997 4435 4899999753
No 9
>KOG3673|consensus
Probab=98.34 E-value=2.2e-07 Score=80.26 Aligned_cols=45 Identities=31% Similarity=0.582 Sum_probs=39.9
Q ss_pred CCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC
Q psy12790 20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL 68 (98)
Q Consensus 20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~ 68 (98)
.+++..+||.|||++ |+|||+.+||+.+||.+..++ .|.|||+..
T Consensus 82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~----GRrGlGl~l 127 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQR----GRRGLGLNL 127 (845)
T ss_pred cchHHHHHHHHhCccccccccccCCCccchhhhhhhc----cccccCccc
Confidence 678999999999999 999999999999999986433 489999864
No 10
>KOG2185|consensus
Probab=98.28 E-value=3.4e-07 Score=76.28 Aligned_cols=33 Identities=36% Similarity=0.710 Sum_probs=30.9
Q ss_pred CCCHHHHHHHhcCCC-CCCCCCCCCccccceecc
Q psy12790 20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGG 52 (98)
Q Consensus 20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~ 52 (98)
+-.||.+||.||||. |.|||+.++||++||.+.
T Consensus 296 TRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~ 329 (486)
T KOG2185|consen 296 TRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAK 329 (486)
T ss_pred cchHHHHHHHHhchhhccccCcCCCccccchhhh
Confidence 447999999999999 999999999999999986
No 11
>KOG1994|consensus
Probab=98.11 E-value=1.8e-06 Score=67.65 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHhcCCC-CCCCCCCCCc---cccceecceeeccCCCcceeccC
Q psy12790 13 SGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQG---IEAPISGGEVREREDLYKGVGVS 67 (98)
Q Consensus 13 ~~~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qG---i~ePI~~~~~r~~~~~r~GlG~~ 67 (98)
++..+|..+++||.+|.+|||+ |.-||++..+ |++||+. .++. +|.|+|.+
T Consensus 73 ~~~~~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~-dI~~---~r~g~G~e 127 (268)
T KOG1994|consen 73 TKRRGIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWY-DIQV---AREGMGDE 127 (268)
T ss_pred hccccccccCcChHHHHHhCCCccchhccccccccccccceee-hHHH---HhhccCcc
Confidence 4566777999999999999999 9999999988 9999998 4774 59999985
No 12
>KOG1996|consensus
Probab=98.08 E-value=3.5e-06 Score=68.29 Aligned_cols=38 Identities=29% Similarity=0.622 Sum_probs=32.0
Q ss_pred CHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcce
Q psy12790 22 NKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKG 63 (98)
Q Consensus 22 n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~G 63 (98)
.+.++||+||||+ |+|||+++||+..|+.+. +.+-|.|
T Consensus 213 tvA~~im~k~G~keGqGLGKsEQGlsTalsve----KT~~rgG 251 (378)
T KOG1996|consen 213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVE----KTSKRGG 251 (378)
T ss_pred hHHHHHHHHhCcccccCcCccccccccceeee----eccccCc
Confidence 4778999999999 999999999999999874 2334666
No 13
>KOG0154|consensus
Probab=98.02 E-value=2.8e-06 Score=71.50 Aligned_cols=49 Identities=45% Similarity=0.809 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccC
Q psy12790 15 VEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVS 67 (98)
Q Consensus 15 ~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~ 67 (98)
..+|+.+|+|.+||++|||. |.|||...+||++||++. .+. .+.|||..
T Consensus 506 ~~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~-~~~---~~~~lg~~ 555 (573)
T KOG0154|consen 506 EPPIDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAE-GRD---RGAGLGAK 555 (573)
T ss_pred cccCCCCccchhhhhccCcccccccccccCCCccccccc-ccc---cCCCCCcc
Confidence 34578999999999999999 999999999999999985 554 37899987
No 14
>KOG4315|consensus
Probab=96.99 E-value=0.00055 Score=57.41 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccC
Q psy12790 15 VEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVS 67 (98)
Q Consensus 15 ~~~i~~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~ 67 (98)
...|+...||..||.-|||+ |.|+|+++|+..--+. ..|.+ ..|||++
T Consensus 148 yeaiPVe~FGlAmLrG~GWkpg~gigk~~q~v~~~~~--~~rpk---glGLGa~ 196 (455)
T KOG4315|consen 148 YEAIPVEGFGLAMLRGMGWKPGPGIGKNKQDVKIKEP--FLRPK---GLGLGAD 196 (455)
T ss_pred cccCchhHHHHHHHhcCCCCCCCCcCcCCcccccccc--ccCCC---CcccCCC
Confidence 45778899999999999999 9999999777544333 35655 5899987
No 15
>KOG2138|consensus
Probab=94.78 E-value=0.016 Score=51.64 Aligned_cols=20 Identities=40% Similarity=1.022 Sum_probs=18.5
Q ss_pred CCCHHHHHHHhcCCC-CCCCC
Q psy12790 20 ESNKGHQMLKRMGWG-GAGLG 39 (98)
Q Consensus 20 ~~n~G~kmL~KMGW~-G~GLG 39 (98)
...||.+||.+|||+ |+|+|
T Consensus 147 s~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 147 SDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhHHHHHHHHhcCccCCCcC
Confidence 467999999999999 99999
No 16
>KOG1994|consensus
Probab=88.08 E-value=0.27 Score=38.92 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhcCCC-CCCCCCCCCccccceecceeeccCCCcceeccCC
Q psy12790 20 ESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL 68 (98)
Q Consensus 20 ~~n~G~kmL~KMGW~-G~GLG~~~qGi~ePI~~~~~r~~~~~r~GlG~~~ 68 (98)
...++++||+-|||+ |.-||....-+.+|+++- .+.. +.||+++.
T Consensus 37 ~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~l-a~~~---~~~i~~e~ 82 (268)
T KOG1994|consen 37 IMRREYKMMENMGYKEGRTLGSNESALEEPIKVL-ANTK---RRGIRAEK 82 (268)
T ss_pred hhhhHHHHHHhcCCCCCCccchhhhhhcchHHHh-hhhc---cccccccC
Confidence 355889999999999 999999999999999873 4433 67999865
No 17
>KOG0524|consensus
Probab=46.57 E-value=11 Score=31.08 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=18.7
Q ss_pred ccceecceeeccCCCcceeccCCCchhHHHH
Q psy12790 46 EAPISGGEVREREDLYKGVGVSLNDPYENFR 76 (98)
Q Consensus 46 ~ePI~~~~~r~~~~~r~GlG~~~~d~~e~~r 76 (98)
..||.+. +|-.|+-..|++++++..|..|-
T Consensus 139 ~~~~piV-fRGPnG~~~gv~AqHSQ~f~~wy 168 (359)
T KOG0524|consen 139 QQPVPIV-FRGPNGAAAGVAAQHSQDFASWY 168 (359)
T ss_pred ceeccEE-EeCCCCcccchhhhhhhhhHHHh
Confidence 3444443 67666666788887766666553
No 18
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=27.07 E-value=35 Score=23.58 Aligned_cols=11 Identities=55% Similarity=1.217 Sum_probs=9.5
Q ss_pred HHHHHHhcCCC
Q psy12790 24 GHQMLKRMGWG 34 (98)
Q Consensus 24 G~kmL~KMGW~ 34 (98)
-+++|+-|||.
T Consensus 12 EhRLLk~MGWq 22 (97)
T PF15337_consen 12 EHRLLKAMGWQ 22 (97)
T ss_pred HHHHHHHhccc
Confidence 47899999997
No 19
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=25.88 E-value=41 Score=19.48 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHhcCCC
Q psy12790 16 EKLDESNKGHQMLKRMGWG 34 (98)
Q Consensus 16 ~~i~~~n~G~kmL~KMGW~ 34 (98)
........-.++|++|||.
T Consensus 15 ~~~g~t~lk~r~L~~~G~~ 33 (58)
T PF08373_consen 15 NLTGSTKLKHRHLKALGYK 33 (58)
T ss_pred ccchHHHHHHHHHHHCCCE
Confidence 3345666778999999985
No 20
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=25.12 E-value=51 Score=23.66 Aligned_cols=21 Identities=43% Similarity=0.745 Sum_probs=14.9
Q ss_pred HHHHHhcCCC--CCCCCCCCCcc
Q psy12790 25 HQMLKRMGWG--GAGLGAKEQGI 45 (98)
Q Consensus 25 ~kmL~KMGW~--G~GLG~~~qGi 45 (98)
..||+.|||. |.--|+.-.|.
T Consensus 127 ~~mmk~MGf~gF~TTKgK~v~gn 149 (180)
T PF08648_consen 127 EEMMKMMGFGGFGTTKGKKVPGN 149 (180)
T ss_pred HHHHHhhcccccccCCCCccCCC
Confidence 4899999998 56566654443
No 21
>KOG4779|consensus
Probab=20.65 E-value=90 Score=20.75 Aligned_cols=23 Identities=35% Similarity=0.901 Sum_probs=14.9
Q ss_pred HHHHHhcCCC-CCCCC--CCCCcccc
Q psy12790 25 HQMLKRMGWG-GAGLG--AKEQGIEA 47 (98)
Q Consensus 25 ~kmL~KMGW~-G~GLG--~~~qGi~e 47 (98)
.+.|.+.||+ .+|+| .+..+|+.
T Consensus 25 eRFL~riGws~d~~~gFG~~q~tiKS 50 (82)
T KOG4779|consen 25 ERFLKRIGWSTDQGIGFGEDQPTIKS 50 (82)
T ss_pred HHHHHHhCcCcccCcccCCCCccHHH
Confidence 4678899998 55554 44555543
Done!