Query psy12790
Match_columns 98
No_of_seqs 120 out of 704
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:42:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vpu_A VPU protein, VPU(39-81) 9.5 1.1E+02 0.0036 17.5 0.9 14 81-94 4-17 (45)
2 4gqb_C Histone H4 peptide; TIM 9.0 1E+02 0.0035 15.5 0.6 8 35-42 8-15 (26)
3 2cpw_A CBL-interacting protein 8.5 3.5E+02 0.012 15.6 3.5 26 8-34 7-32 (64)
4 2ort_A Nitric oxide synthase, 7.8 2.2E+02 0.0075 22.9 2.4 29 9-37 150-180 (389)
5 3emf_A HIA (adhesin); binding 6.7 78 0.0027 21.5 -0.6 9 26-34 61-69 (116)
6 2p57_A GTPase-activating prote 6.5 4E+02 0.014 18.2 3.0 26 69-94 114-139 (144)
7 2dyo_B Autophagy protein 16; u 6.2 3.9E+02 0.013 15.8 2.4 16 77-92 22-37 (57)
8 3da7_A Barnase circular permut 5.8 1.9E+02 0.0065 19.4 0.9 21 17-37 64-85 (111)
9 1whz_A Hypothetical protein; a 5.5 2.4E+02 0.0081 16.1 1.1 10 25-34 11-20 (70)
10 2jvf_A De novo protein M7; tet 5.3 2.4E+02 0.008 18.0 1.1 12 24-35 69-80 (96)
No 1
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=9.45 E-value=1.1e+02 Score=17.51 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhh
Q psy12790 81 QAFISRMKERQEHT 94 (98)
Q Consensus 81 ~~f~~r~k~r~~~~ 94 (98)
...+.||++|++.+
T Consensus 4 d~li~RIreRaEDS 17 (45)
T 1vpu_A 4 DRLIDRITERAEDS 17 (45)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhcC
Confidence 45688999998754
No 2
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=9.01 E-value=1e+02 Score=15.48 Aligned_cols=8 Identities=50% Similarity=0.879 Sum_probs=5.7
Q ss_pred CCCCCCCC
Q psy12790 35 GAGLGAKE 42 (98)
Q Consensus 35 G~GLG~~~ 42 (98)
|+|||+-+
T Consensus 8 gkglgkgg 15 (26)
T 4gqb_C 8 GKGLGKGG 15 (26)
T ss_pred CcccCccc
Confidence 78888743
No 3
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=8.50 E-value=3.5e+02 Score=15.63 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=12.8
Q ss_pred CCcCCCCCCCCCCCCHHHHHHHhcCCC
Q psy12790 8 GAYGKSGVEKLDESNKGHQMLKRMGWG 34 (98)
Q Consensus 8 ~~~~~~~~~~i~~~n~G~kmL~KMGW~ 34 (98)
+-|...+...+.....= +.|.-|||.
T Consensus 7 ~r~~t~~ya~~~~e~~i-~~L~~MGF~ 32 (64)
T 2cpw_A 7 GRNRQQRPGTIKHGSAL-DVLLSMGFP 32 (64)
T ss_dssp SCCSCCSSCSSSCCCHH-HHHHHHTCC
T ss_pred cchhhhcccccCCHHHH-HHHHHcCCC
Confidence 34444444444444443 444559885
No 4
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=7.79 E-value=2.2e+02 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=16.1
Q ss_pred CcCCCCCCCC-CCCCHHH-HHHHhcCCCCCC
Q psy12790 9 AYGKSGVEKL-DESNKGH-QMLKRMGWGGAG 37 (98)
Q Consensus 9 ~~~~~~~~~i-~~~n~G~-kmL~KMGW~G~G 37 (98)
+|+++...-| |+.|+-+ .+.+++||+|.|
T Consensus 150 GY~~~dGsiiGDPa~ve~T~~c~~lGW~~~~ 180 (389)
T 2ort_A 150 GYQMPDGTIRGDAATLEFTQLCIDLGWKPRY 180 (389)
T ss_dssp BC-----CCCBCGGGHHHHHHHHHTTCCCCC
T ss_pred CccCCCCCccCCccchHHHHHHHhCCCCCCC
Confidence 4555555445 6677765 467889999653
No 5
>3emf_A HIA (adhesin); binding domain, autotransporter, trimeric, cell adhesion; 2.00A {Haemophilus influenzae}
Probab=6.71 E-value=78 Score=21.53 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=7.3
Q ss_pred HHHHhcCCC
Q psy12790 26 QMLKRMGWG 34 (98)
Q Consensus 26 kmL~KMGW~ 34 (98)
.=|++|||-
T Consensus 61 gDL~nmGWV 69 (116)
T 3emf_A 61 GNLRKLGWV 69 (116)
T ss_dssp HHHTTCEEE
T ss_pred hhHhhCCeE
Confidence 458999996
No 6
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=6.53 E-value=4e+02 Score=18.22 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=19.3
Q ss_pred CchhHHHHHhHHHHHHHHHHHHHHhh
Q psy12790 69 NDPYENFRKSKKQAFISRMKERQEHT 94 (98)
Q Consensus 69 ~d~~e~~rk~~~~~f~~r~k~r~~~~ 94 (98)
.+..+.|..+-...|+++++.+.++.
T Consensus 114 ~~~~~KY~s~aA~~Yr~~l~~~~~~~ 139 (144)
T 2p57_A 114 NDANTKYNSRAAQMYREKIRQLGSAA 139 (144)
T ss_dssp CSHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred CchhhccCcHHHHHHHHHHHHHHHHH
Confidence 35556777777788999999887653
No 7
>2dyo_B Autophagy protein 16; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_B
Probab=6.18 E-value=3.9e+02 Score=15.77 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHHHHHH
Q psy12790 77 KSKKQAFISRMKERQE 92 (98)
Q Consensus 77 k~~~~~f~~r~k~r~~ 92 (98)
.+|-..|++|+++|.+
T Consensus 22 ~~MD~~lLdRL~qRD~ 37 (57)
T 2dyo_B 22 DSMDDLLIRRLTDRND 37 (57)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 4566779999999976
No 8
>3da7_A Barnase circular permutant; circular permutant, protein-protein complex, endonuclease, cytoplasm, protein binding; 2.25A {Bacillus amyloliquefaciens}
Probab=5.78 E-value=1.9e+02 Score=19.36 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHhcCCC-CCC
Q psy12790 17 KLDESNKGHQMLKRMGWG-GAG 37 (98)
Q Consensus 17 ~i~~~n~G~kmL~KMGW~-G~G 37 (98)
.|++.=+-.+-.+++||. ++|
T Consensus 64 ~LP~nyITK~eA~~~GW~~~kg 85 (111)
T 3da7_A 64 KLPDNYITKSEAQALGWVASKG 85 (111)
T ss_dssp SCCTTEECHHHHHHTTCCTTTT
T ss_pred cCCcceeeHHHHHHcCCCCCCC
Confidence 456666777788999999 774
No 9
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=5.48 E-value=2.4e+02 Score=16.09 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=8.5
Q ss_pred HHHHHhcCCC
Q psy12790 25 HQMLKRMGWG 34 (98)
Q Consensus 25 ~kmL~KMGW~ 34 (98)
-++|++.||.
T Consensus 11 ik~L~~~G~~ 20 (70)
T 1whz_A 11 ARKLRRLGFV 20 (70)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCE
Confidence 4789999997
No 10
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=5.29 E-value=2.4e+02 Score=18.00 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=9.3
Q ss_pred HHHHHHhcCCCC
Q psy12790 24 GHQMLKRMGWGG 35 (98)
Q Consensus 24 G~kmL~KMGW~G 35 (98)
-.++|+|+||+.
T Consensus 69 iarllqklgykd 80 (96)
T 2jvf_A 69 IARLLQKLGYKD 80 (96)
T ss_dssp HHHHHHHHTCSE
T ss_pred HHHHHHHhCCCc
Confidence 357899999973
Done!