Query psy12790
Match_columns 98
No_of_seqs 120 out of 704
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 19:43:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pcsa1 d.129.3.10 (A:1-147) H 9.7 1.4E+02 0.0099 16.7 3.2 24 71-94 124-147 (147)
2 d1vpua_ g.34.1.1 (A:) HIV-1 VP 9.6 49 0.0036 17.6 0.9 14 81-94 4-17 (45)
3 d2vy4a1 g.37.1.7 (A:53-87) U11 8.9 54 0.004 16.5 0.9 8 27-34 27-34 (35)
4 d2fsra1 d.108.1.1 (A:4-167) Pr 8.2 82 0.006 17.9 1.7 16 19-34 130-145 (164)
5 d3e7ma1 d.174.1.1 (A:77-497) N 7.3 78 0.0057 23.9 1.5 28 10-37 188-217 (421)
6 d1q2oa_ d.174.1.1 (A:) Nitric 7.2 78 0.0057 23.9 1.5 28 10-37 190-219 (416)
7 d1om4a_ d.174.1.1 (A:) Nitric 7.0 78 0.0057 23.9 1.4 28 10-37 187-216 (418)
8 d1l6ja1 a.20.1.2 (A:29-105) Ge 5.4 86 0.0062 17.5 0.6 31 10-40 3-34 (77)
9 d1s7ma_ b.144.1.1 (A:) Autotra 4.9 63 0.0046 21.3 -0.3 8 27-34 102-109 (158)
10 d2crna1 a.5.2.1 (A:8-58) Suppr 4.8 1.4E+02 0.01 15.4 1.2 9 26-34 7-15 (51)
No 1
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=9.68 E-value=1.4e+02 Score=16.73 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=18.2
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhh
Q psy12790 71 PYENFRKSKKQAFISRMKERQEHT 94 (98)
Q Consensus 71 ~~e~~rk~~~~~f~~r~k~r~~~~ 94 (98)
.++..-+++..+|..|++++-.++
T Consensus 124 li~~~~~~~~~~f~~~~~~~l~~s 147 (147)
T d2pcsa1 124 MLGGVAKLLISDFFKKIQKEIAKS 147 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345555788999999999987653
No 2
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=9.56 E-value=49 Score=17.63 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhh
Q psy12790 81 QAFISRMKERQEHT 94 (98)
Q Consensus 81 ~~f~~r~k~r~~~~ 94 (98)
...++||++|++.+
T Consensus 4 drLi~RIrERAEDS 17 (45)
T d1vpua_ 4 DRLIDRITERAEDS 17 (45)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcccC
Confidence 45788999998754
No 3
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.86 E-value=54 Score=16.48 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=5.9
Q ss_pred HHHhcCCC
Q psy12790 27 MLKRMGWG 34 (98)
Q Consensus 27 mL~KMGW~ 34 (98)
-|.||||+
T Consensus 27 rLRklgYs 34 (35)
T d2vy4a1 27 RLRKMGYT 34 (35)
T ss_dssp HHHHCSSC
T ss_pred hHhhcccC
Confidence 47888875
No 4
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.20 E-value=82 Score=17.86 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHhcCCC
Q psy12790 19 DESNKGHQMLKRMGWG 34 (98)
Q Consensus 19 ~~~n~G~kmL~KMGW~ 34 (98)
..+-...++++|+||+
T Consensus 130 ~~N~~S~rl~ek~GF~ 145 (164)
T d2fsra1 130 PQNRKSAAVAERIGGT 145 (164)
T ss_dssp TTCHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHCCCE
Confidence 3444568999999997
No 5
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.27 E-value=78 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=18.1
Q ss_pred cCCCCCCCC-CCCCHHH-HHHHhcCCCCCC
Q psy12790 10 YGKSGVEKL-DESNKGH-QMLKRMGWGGAG 37 (98)
Q Consensus 10 ~~~~~~~~i-~~~n~G~-kmL~KMGW~G~G 37 (98)
|+++...-| |+.|+.+ ++.+++||+|.|
T Consensus 188 Y~~~DGsiiGDPa~vefT~~c~~lGW~~~~ 217 (421)
T d3e7ma1 188 YQMPDGTIRGDAATLEFTQLCIDLGWKPRY 217 (421)
T ss_dssp EECTTSCEEECGGGHHHHHHHHHTTCCCCC
T ss_pred ccCCCCcccCChhhhHHHHHHHHcCCCCCC
Confidence 454444444 6677776 467889999653
No 6
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.24 E-value=78 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=18.3
Q ss_pred cCCCCCCCC-CCCCHHH-HHHHhcCCCCCC
Q psy12790 10 YGKSGVEKL-DESNKGH-QMLKRMGWGGAG 37 (98)
Q Consensus 10 ~~~~~~~~i-~~~n~G~-kmL~KMGW~G~G 37 (98)
|+++...-| |+.|+.+ +...++||+|.|
T Consensus 190 Y~~~dGsiiGDPa~vefT~~c~~lGW~~~~ 219 (416)
T d1q2oa_ 190 YRQQDGSVRGDPANVEITELCIQHGWTPGN 219 (416)
T ss_dssp EECTTSCEEECGGGHHHHHHHHHTTCCCCC
T ss_pred cCCCCCCcccCcchhHHHHHHHHcCCCCCC
Confidence 445444444 6677776 467899999654
No 7
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.98 E-value=78 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=18.6
Q ss_pred cCCCCCCCC-CCCCHHH-HHHHhcCCCCCC
Q psy12790 10 YGKSGVEKL-DESNKGH-QMLKRMGWGGAG 37 (98)
Q Consensus 10 ~~~~~~~~i-~~~n~G~-kmL~KMGW~G~G 37 (98)
|+++..+-| |+.|+.+ ++..++||+|.+
T Consensus 187 Y~~~dGsiiGDPa~vefT~~c~~lGW~~~~ 216 (418)
T d1om4a_ 187 YKQPDGSTLGDPANVQFTEICIQQGWKAPR 216 (418)
T ss_dssp EECTTSCEEECGGGHHHHHHHHTTTCCCCC
T ss_pred ccCCCCCccCCcchHHHHHHHHHcCCCCCC
Confidence 455544444 6777777 467899999653
No 8
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=86 Score=17.51 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=17.7
Q ss_pred cCCCCCCCCCCCCHHHHHHHhcCCC-CCCCCC
Q psy12790 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGA 40 (98)
Q Consensus 10 ~~~~~~~~i~~~n~G~kmL~KMGW~-G~GLG~ 40 (98)
|.-.+...+.+-.+....|++.||- ....+.
T Consensus 3 fpg~~~~~~~d~~~a~~yL~~fGYl~~~~~~~ 34 (77)
T d1l6ja1 3 FPGDLRTNLTDRQLAEEYLYRYGYTRVAEMRG 34 (77)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHTTCC-------
T ss_pred CCcccccccchHHHHHHHHHHcCCCCCCCccc
Confidence 3334455555556788999999997 544433
No 9
>d1s7ma_ b.144.1.1 (A:) Autotransporter Hia {Haemophilus influenzae [TaxId: 727]}
Probab=4.94 E-value=63 Score=21.35 Aligned_cols=8 Identities=38% Similarity=0.958 Sum_probs=6.8
Q ss_pred HHHhcCCC
Q psy12790 27 MLKRMGWG 34 (98)
Q Consensus 27 mL~KMGW~ 34 (98)
=|++|||-
T Consensus 102 DLr~lGWV 109 (158)
T d1s7ma_ 102 DLRGLGWV 109 (158)
T ss_dssp HHHTCEEE
T ss_pred hhhcCceE
Confidence 48999995
No 10
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.85 E-value=1.4e+02 Score=15.43 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHhcCCC
Q psy12790 26 QMLKRMGWG 34 (98)
Q Consensus 26 kmL~KMGW~ 34 (98)
.+|.-|||.
T Consensus 7 ~~L~~MGF~ 15 (51)
T d2crna1 7 EPLLAMGFP 15 (51)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHcCCC
Confidence 456678775
Done!