Your job contains 1 sequence.
>psy12790
MKAGHPGGAYGKSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDL
YKGVGVSLNDPYENFRKSKKQAFISRMKERQEHTRGAE
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12790
(98 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1305279 - symbol:Cherp "calcium homeostasis endoplasm... 275 9.2e-23 1
UNIPROTKB|F1S9W3 - symbol:CHERP "Uncharacterized protein"... 273 1.3e-22 1
UNIPROTKB|Q8IWX8 - symbol:CHERP "Calcium homeostasis endo... 273 1.4e-22 1
UNIPROTKB|J3QK89 - symbol:CHERP "Calcium homeostasis endo... 273 1.4e-22 1
MGI|MGI:106417 - symbol:Cherp "calcium homeostasis endopl... 273 1.5e-22 1
UNIPROTKB|F1NDZ9 - symbol:CHERP "Uncharacterized protein"... 272 1.8e-22 1
UNIPROTKB|A8E648 - symbol:CHERP "CHERP protein" species:9... 271 2.3e-22 1
UNIPROTKB|E2RHU5 - symbol:CHERP "Uncharacterized protein"... 271 2.4e-22 1
UNIPROTKB|J9NZK1 - symbol:CHERP "Uncharacterized protein"... 269 3.8e-22 1
FB|FBgn0261872 - symbol:scaf6 species:7227 "Drosophila me... 264 1.4e-21 1
ZFIN|ZDB-GENE-040407-1 - symbol:cherp "calcium homeostasi... 263 1.7e-21 1
WB|WBGene00006442 - symbol:tag-65 species:6239 "Caenorhab... 205 1.7e-15 1
TAIR|locus:2146839 - symbol:AT5G26610 species:3702 "Arabi... 124 2.1e-07 1
UNIPROTKB|Q6DDU9 - symbol:rbm5-b "RNA-binding protein 5-B... 119 3.2e-06 1
UNIPROTKB|A0JMV4 - symbol:rbm5-a "RNA-binding protein 5-A... 116 7.6e-06 1
UNIPROTKB|A4IGK4 - symbol:rbm5 "RNA-binding protein 5" sp... 116 7.7e-06 1
UNIPROTKB|E1BXK5 - symbol:E1BXK5 "Uncharacterized protein... 114 1.2e-05 1
UNIPROTKB|G3MYW2 - symbol:NKRF "Uncharacterized protein" ... 113 1.3e-05 1
UNIPROTKB|O15226 - symbol:NKRF "NF-kappa-B-repressing fac... 113 1.3e-05 1
UNIPROTKB|K7GNC7 - symbol:NKRF "Uncharacterized protein" ... 113 1.3e-05 1
UNIPROTKB|G3V1N1 - symbol:NKRF "NF-kappa-B-repressing fac... 113 1.3e-05 1
UNIPROTKB|E2RI67 - symbol:NKRF "Uncharacterized protein" ... 113 1.5e-05 1
UNIPROTKB|F1RUA0 - symbol:NKRF "Uncharacterized protein" ... 113 1.5e-05 1
UNIPROTKB|Q8IWZ8 - symbol:SUGP1 "SURP and G-patch domain-... 102 1.9e-05 2
MGI|MGI:1924536 - symbol:Nkrf "NF-kappaB repressing facto... 111 2.1e-05 1
RGD|1563950 - symbol:Nkrf "NFKB repressing factor" specie... 111 2.1e-05 1
UNIPROTKB|E2RCV3 - symbol:SUGP1 "Uncharacterized protein"... 101 2.3e-05 2
UNIPROTKB|J9P8U4 - symbol:SUGP1 "Uncharacterized protein"... 101 2.4e-05 2
MGI|MGI:2678085 - symbol:Sugp2 "SURP and G patch domain c... 112 2.7e-05 1
RGD|1306042 - symbol:Sugp2 "SURP and G patch domain conta... 112 2.7e-05 1
UNIPROTKB|A4FV64 - symbol:SF4 "SF4 protein" species:9913 ... 100 3.0e-05 2
FB|FBgn0051301 - symbol:CG31301 species:7227 "Drosophila ... 107 3.0e-05 1
UNIPROTKB|F1NL52 - symbol:NKRF "Uncharacterized protein" ... 110 3.0e-05 1
UNIPROTKB|E1BE55 - symbol:SUGP2 "Uncharacterized protein"... 111 3.6e-05 1
WB|WBGene00013224 - symbol:Y55D9A.2 species:6239 "Caenorh... 106 4.8e-05 1
UNIPROTKB|J9P3P4 - symbol:SUGP2 "Uncharacterized protein"... 109 5.6e-05 1
UNIPROTKB|E2RGL4 - symbol:SUGP2 "Uncharacterized protein"... 109 5.8e-05 1
UNIPROTKB|E2RGP1 - symbol:SUGP2 "Uncharacterized protein"... 109 5.9e-05 1
UNIPROTKB|I3LFJ5 - symbol:SUGP2 "Uncharacterized protein"... 109 5.9e-05 1
UNIPROTKB|Q8IX01 - symbol:SUGP2 "SURP and G-patch domain-... 108 7.4e-05 1
DICTYBASE|DDB_G0286951 - symbol:DDB_G0286951 species:4468... 108 7.7e-05 1
UNIPROTKB|Q1RMU5 - symbol:RBM5 "RNA-binding protein 5" sp... 105 0.00011 1
UNIPROTKB|E2QUP3 - symbol:RBM5 "Uncharacterized protein" ... 105 0.00011 1
UNIPROTKB|P52756 - symbol:RBM5 "RNA-binding protein 5" sp... 105 0.00011 1
MGI|MGI:1933204 - symbol:Rbm5 "RNA binding motif protein ... 105 0.00011 1
RGD|1305059 - symbol:Rbm5 "RNA binding motif protein 5" s... 105 0.00011 1
UNIPROTKB|F1NAQ9 - symbol:SUGP1 "Uncharacterized protein"... 103 0.00013 1
UNIPROTKB|F1NFM6 - symbol:PINX1 "Uncharacterized protein"... 92 0.00013 1
TAIR|locus:2083750 - symbol:AT3G52120 species:3702 "Arabi... 101 0.00013 1
UNIPROTKB|F1SPQ8 - symbol:RBM5 "Uncharacterized protein" ... 104 0.00014 1
ZFIN|ZDB-GENE-030616-73 - symbol:nkrf "NF-kappa B repress... 104 0.00015 1
TAIR|locus:505006587 - symbol:AT5G08535 species:3702 "Ara... 91 0.00017 1
MGI|MGI:1917866 - symbol:Sugp1 "SURP and G patch domain c... 101 0.00022 1
RGD|1310496 - symbol:Sugp1 "SURP and G patch domain conta... 101 0.00022 1
UNIPROTKB|E5RJG9 - symbol:PINX1 "PIN2/TERF1-interacting t... 89 0.00027 1
ZFIN|ZDB-GENE-070615-33 - symbol:sugp1 "SURP and G patch ... 99 0.00034 1
UNIPROTKB|F8WBT5 - symbol:PINX1 "PIN2/TERF1-interacting t... 89 0.00042 1
ZFIN|ZDB-GENE-060929-836 - symbol:aggf1 "angiogenic facto... 99 0.00046 1
UNIPROTKB|E1C5N4 - symbol:E1C5N4 "Uncharacterized protein... 100 0.00053 1
UNIPROTKB|E5RGR1 - symbol:PINX1 "PIN2/TERF1-interacting t... 89 0.00063 1
UNIPROTKB|F1MAK0 - symbol:F1MAK0 "Uncharacterized protein... 96 0.00085 1
UNIPROTKB|J9P453 - symbol:RBM10 "Uncharacterized protein"... 96 0.00095 1
UNIPROTKB|F1RWX6 - symbol:LOC100525622 "Uncharacterized p... 96 0.00098 1
UNIPROTKB|F1NWU4 - symbol:AGGF1 "Uncharacterized protein"... 95 0.00098 1
>RGD|1305279 [details] [associations]
symbol:Cherp "calcium homeostasis endoplasmic reticulum protein"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006396
"RNA processing" evidence=IEA] [GO:0006874 "cellular calcium ion
homeostasis" evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0033017 "sarcoplasmic reticulum
membrane" evidence=IDA] [GO:0044325 "ion channel binding"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=ISO] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 RGD:1305279
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0033017 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 IPI:IPI00362613
ProteinModelPortal:D3ZAX5 PRIDE:D3ZAX5 Ensembl:ENSRNOT00000017424
UCSC:RGD:1305279 Uniprot:D3ZAX5
Length = 946
Score = 275 (101.9 bits), Expect = 9.2e-23, P = 9.2e-23
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 857 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 916
Query: 76 RKSKKQAFISRMKERQEH-TRGA 97
R++K +FI+RMK R E T GA
Sbjct: 917 RRNKSYSFIARMKARDEFSTFGA 939
>UNIPROTKB|F1S9W3 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051533 "positive regulation of NFAT protein import
into nucleus" evidence=IEA] [GO:0051209 "release of sequestered
calcium ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0044325 "ion channel
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:CU929691
Ensembl:ENSSSCT00000015139 OMA:THELPTH Uniprot:F1S9W3
Length = 852
Score = 273 (101.2 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 774 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 833
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R E
Sbjct: 834 RRNKSYSFIARMKARDE 850
>UNIPROTKB|Q8IWX8 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0051209 "release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0051533
"positive regulation of NFAT protein import into nucleus"
evidence=IMP] [GO:0044325 "ion channel binding" evidence=IPI]
[GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS]
[GO:0007399 "nervous system development" evidence=TAS] [GO:0006874
"cellular calcium ion homeostasis" evidence=IDA] [GO:0008285
"negative regulation of cell proliferation" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
EMBL:AF536542 GO:GO:0048471 GO:GO:0008285 GO:GO:0007399
GO:GO:0051209 GO:GO:0003723 GO:GO:0006396 GO:GO:0051533
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0033017
EMBL:AC008764 EMBL:BC021294 EMBL:Y08265 EMBL:U94836 IPI:IPI00333010
RefSeq:NP_006378.3 UniGene:Hs.740364 HSSP:Q8CH02
ProteinModelPortal:Q8IWX8 SMR:Q8IWX8 IntAct:Q8IWX8
MINT:MINT-1637299 STRING:Q8IWX8 PhosphoSite:Q8IWX8 DMDM:296439404
PaxDb:Q8IWX8 PRIDE:Q8IWX8 Ensembl:ENST00000546361 GeneID:10523
KEGG:hsa:10523 UCSC:uc002nei.1 CTD:10523 GeneCards:GC19M016629
HGNC:HGNC:16930 HPA:HPA050647 neXtProt:NX_Q8IWX8 PharmGKB:PA26459
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InParanoid:Q8IWX8 KO:K12841 OrthoDB:EOG4BCDMG PhylomeDB:Q8IWX8
GenomeRNAi:10523 NextBio:39918 Bgee:Q8IWX8 CleanEx:HS_CHERP
Genevestigator:Q8IWX8 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
Uniprot:Q8IWX8
Length = 916
Score = 273 (101.2 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 838 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R E
Sbjct: 898 RRNKSYSFIARMKARDE 914
>UNIPROTKB|J3QK89 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 EMBL:AC008764 HGNC:HGNC:16930 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
ProteinModelPortal:J3QK89 Ensembl:ENST00000198939 OMA:FEGPWNS
Uniprot:J3QK89
Length = 927
Score = 273 (101.2 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 849 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 908
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R E
Sbjct: 909 RRNKSYSFIARMKARDE 925
>MGI|MGI:106417 [details] [associations]
symbol:Cherp "calcium homeostasis endoplasmic reticulum
protein" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006874 "cellular calcium ion homeostasis" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO] [GO:0033017 "sarcoplasmic reticulum membrane"
evidence=ISO] [GO:0044325 "ion channel binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051209 "release of sequestered calcium ion into cytosol"
evidence=ISO] [GO:0051533 "positive regulation of NFAT protein
import into nucleus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 MGI:MGI:106417
GO:GO:0005783 GO:GO:0048471 GO:GO:0008285 GO:GO:0051209
GO:GO:0003723 GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 HSSP:Q8CH02 CTD:10523
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716 KO:K12841
OrthoDB:EOG4BCDMG InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
EMBL:AF536541 EMBL:BC020488 IPI:IPI00229604 RefSeq:NP_613051.3
UniGene:Mm.30136 ProteinModelPortal:Q8CGZ0 SMR:Q8CGZ0 IntAct:Q8CGZ0
STRING:Q8CGZ0 PhosphoSite:Q8CGZ0 PaxDb:Q8CGZ0 PRIDE:Q8CGZ0
GeneID:27967 KEGG:mmu:27967 UCSC:uc009mga.1 InParanoid:Q8CGZ0
NextBio:306460 Bgee:Q8CGZ0 CleanEx:MM_CHERP Genevestigator:Q8CGZ0
Uniprot:Q8CGZ0
Length = 936
Score = 273 (101.2 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 847 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 906
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R E
Sbjct: 907 RRNKSYSFIARMKARDE 923
>UNIPROTKB|F1NDZ9 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AADN02061998 IPI:IPI00585527
Ensembl:ENSGALT00000006060 ArrayExpress:F1NDZ9 Uniprot:F1NDZ9
Length = 905
Score = 272 (100.8 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG++R++ D YKGVGV+L+DPYEN+
Sbjct: 828 RLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDIRDKWDQYKGVGVALDDPYENY 887
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R E
Sbjct: 888 RRNKSYSFIARMKARDE 904
>UNIPROTKB|A8E648 [details] [associations]
symbol:CHERP "CHERP protein" species:9913 "Bos taurus"
[GO:0051533 "positive regulation of NFAT protein import into
nucleus" evidence=IEA] [GO:0051209 "release of sequestered calcium
ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 CTD:10523 eggNOG:NOG267701 HOGENOM:HOG000010294
HOVERGEN:HBG052716 KO:K12841 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 GeneTree:ENSGT00600000084415 OMA:FEGPWNS
EMBL:DAAA02019093 EMBL:BC153841 IPI:IPI00871125
RefSeq:NP_001103268.1 UniGene:Bt.46185 Ensembl:ENSBTAT00000006959
GeneID:525110 KEGG:bta:525110 InParanoid:A8E648 NextBio:20874102
Uniprot:A8E648
Length = 916
Score = 271 (100.5 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LG KEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 838 RLGEENKGHQMLVKMGWSGSGGLGVKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R+E
Sbjct: 898 RRNKSYSFIARMKAREE 914
>UNIPROTKB|E2RHU5 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AAEX03012307 Ensembl:ENSCAFT00000024839
NextBio:20895802 Uniprot:E2RHU5
Length = 940
Score = 271 (100.5 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 50/80 (62%), Positives = 64/80 (80%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LG KEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 838 RLGEENKGHQMLVKMGWSGSGGLGVKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897
Query: 76 RKSKKQAFISRMKERQEHTR 95
R++K +FI+RMK R E R
Sbjct: 898 RRNKSYSFIARMKARDECNR 917
>UNIPROTKB|J9NZK1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
CTD:10523 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:AAEX03012307 RefSeq:XP_852773.2
ProteinModelPortal:J9NZK1 Ensembl:ENSCAFT00000050032 GeneID:610237
KEGG:cfa:610237 Uniprot:J9NZK1
Length = 916
Score = 269 (99.8 bits), Expect = 3.8e-22, P = 3.8e-22
Identities = 49/77 (63%), Positives = 63/77 (81%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LG KEQGI+ PI GG+VR++ D YKGVGV+L+DPYEN+
Sbjct: 838 RLGEENKGHQMLVKMGWSGSGGLGVKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENY 897
Query: 76 RKSKKQAFISRMKERQE 92
R++K +FI+RMK R E
Sbjct: 898 RRNKSYSFIARMKARDE 914
>FB|FBgn0261872 [details] [associations]
symbol:scaf6 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;NAS]
[GO:0005681 "spliceosomal complex" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 EMBL:AE014296
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 OMA:FEGPWNS FlyBase:FBgn0261872
GenomeRNAi:3346235 NextBio:849268 EMBL:BT031129
RefSeq:NP_001014589.1 UniGene:Dm.3754 SMR:Q59E33 STRING:Q59E33
EnsemblMetazoa:FBtr0091474 GeneID:3346235 KEGG:dme:Dmel_CG33522
UCSC:CG33522-RA CTD:3346235 OrthoDB:EOG4FN2ZV Uniprot:Q59E33
Length = 960
Score = 264 (98.0 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 7 GGAYGKSGVEKLDESNKGHQMLKRMGWGGAG--LGAKEQGIEAPISGGEVREREDLYKGV 64
G + K + ++ESNKGHQML +MGW G G LG+K QGI+ PISGGEVR+R ++YKGV
Sbjct: 872 GSTFAKPA-DFIEESNKGHQMLMKMGWAGTGTGLGSKNQGIDTPISGGEVRDRREMYKGV 930
Query: 65 GVSLNDPYENFRKSKKQAFISRMKERQE 92
G +++DP+E+FRK+K AF RM+ R +
Sbjct: 931 GANMHDPFESFRKNKGAAFAHRMRSRDD 958
>ZFIN|ZDB-GENE-040407-1 [details] [associations]
symbol:cherp "calcium homeostasis endoplasmic
reticulum protein" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-040407-1
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905
PROSITE:PS51391 EMBL:BC171627 IPI:IPI00490676 UniGene:Dr.75231
ArrayExpress:B7ZVL5 Bgee:B7ZVL5 Uniprot:B7ZVL5
Length = 910
Score = 263 (97.6 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 47/80 (58%), Positives = 65/80 (81%)
Query: 17 KLDESNKGHQMLKRMGWGGAG-LGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+L E NKGHQML +MGW G+G LGAKEQGI+ PI GG++R++ D YKGVGV+L+DPY N+
Sbjct: 822 RLGEENKGHQMLMKMGWSGSGGLGAKEQGIQDPIKGGDIRDKWDQYKGVGVALDDPYVNY 881
Query: 76 RKSKKQAFISRMKERQEHTR 95
R++K F++RMK R++ +R
Sbjct: 882 RRNKSYNFVARMKAREKVSR 901
>WB|WBGene00006442 [details] [associations]
symbol:tag-65 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000467
Pfam:PF01585 PROSITE:PS50174 SMART:SM00443 GO:GO:0003676
InterPro:IPR006569 PROSITE:PS51391 GeneTree:ENSGT00600000084415
EMBL:Z81094 EMBL:AF536544 PIR:T22938 RefSeq:NP_506386.1
UniGene:Cel.3320 ProteinModelPortal:G5ED97
EnsemblMetazoa:F58G11.5.1 EnsemblMetazoa:F58G11.5.2 GeneID:179857
KEGG:cel:CELE_F58G11.5 CTD:179857 WormBase:F58G11.5 OMA:NKGAQLM
NextBio:907146 Uniprot:G5ED97
Length = 675
Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 41/79 (51%), Positives = 52/79 (65%)
Query: 9 AYG-KSGVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVS 67
++G KS E L NKG Q++ +MGWGG GLGA E GI P+SGGEVR R + + G+G S
Sbjct: 592 SFGFKSAQEPLSYDNKGAQLMAKMGWGGKGLGANESGIVDPVSGGEVRNRNEQFMGLGRS 651
Query: 68 LNDPYENFRKSKKQAFISR 86
L DPYE FRK + + R
Sbjct: 652 L-DPYEQFRKQRSGTYHDR 669
>TAIR|locus:2146839 [details] [associations]
symbol:AT5G26610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR007087 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS00028
PROSITE:PS50174 SMART:SM00355 SMART:SM00443 EMBL:CP002688
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 InterPro:IPR022755
Pfam:PF12171 EMBL:BT026069 EMBL:AK229675 IPI:IPI00530429
RefSeq:NP_001190403.1 RefSeq:NP_850884.1 RefSeq:NP_850885.1
UniGene:At.43411 PRIDE:Q147M4 EnsemblPlants:AT5G26610.1
EnsemblPlants:AT5G26610.2 EnsemblPlants:AT5G26610.3 GeneID:832729
KEGG:ath:AT5G26610 TAIR:At5g26610 HOGENOM:HOG000083817
InParanoid:Q147M4 OMA:IRKVFYC PhylomeDB:Q147M4
ProtClustDB:CLSN2680285 Genevestigator:Q147M4 Uniprot:Q147M4
Length = 301
Score = 124 (48.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 17 KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPY---- 72
K+ SN G ++L++MGW G GLG +EQGI PI G +R+R G+G D Y
Sbjct: 63 KISSSNVGFRLLQKMGWKGKGLGKQEQGITEPIKSG-IRDRR---LGLGKQEEDDYFTAE 118
Query: 73 ENFRKSKKQAFISRMKE 89
EN ++ K I +E
Sbjct: 119 ENIQRKKLDIEIEETEE 135
>UNIPROTKB|Q6DDU9 [details] [associations]
symbol:rbm5-b "RNA-binding protein 5-B" species:8355
"Xenopus laevis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0043065 GO:GO:0000245 GO:GO:0000381 KO:K13094
EMBL:BC077408 RefSeq:NP_001086761.1 UniGene:Xl.19852 HSSP:O95218
ProteinModelPortal:Q6DDU9 GeneID:446596 KEGG:xla:446596 CTD:446596
Xenbase:XB-GENE-6256678 Uniprot:Q6DDU9
Length = 749
Score = 119 (46.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR R L KG
Sbjct: 667 YEQPTKDGIDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQA-QVRMRGAGLGAKGSSY 725
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
+N ++++ + K+A +R E +
Sbjct: 726 GVNTS-DSYKDAVKKAMFARFSEME 749
>UNIPROTKB|A0JMV4 [details] [associations]
symbol:rbm5-a "RNA-binding protein 5-A" species:8355
"Xenopus laevis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GO:GO:0000245 GO:GO:0000381 KO:K13094 EMBL:BC126019
RefSeq:NP_001090434.1 UniGene:Xl.7259 GeneID:779346 KEGG:xla:779346
CTD:779346 Xenbase:XB-GENE-494991 Uniprot:A0JMV4
Length = 833
Score = 116 (45.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR R L KG
Sbjct: 751 YEQPTKDGIDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQA-QVRMRGAGLGAKGSSY 809
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
+N ++++ + ++A +R E +
Sbjct: 810 GVNTS-DSYKDAVRKAMFARFSEME 833
>UNIPROTKB|A4IGK4 [details] [associations]
symbol:rbm5 "RNA-binding protein 5" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043065
"positive regulation of apoptotic process" evidence=ISS]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
eggNOG:NOG290849 KO:K13094 HOGENOM:HOG000046285 CTD:10181
OMA:TADSYKD EMBL:CR855749 EMBL:BC135140 RefSeq:NP_001017278.1
UniGene:Str.11018 ProteinModelPortal:A4IGK4 STRING:A4IGK4
Ensembl:ENSXETT00000015911 GeneID:550032 KEGG:xtr:550032
Xenbase:XB-GENE-494987 Bgee:A4IGK4 Uniprot:A4IGK4
Length = 838
Score = 116 (45.9 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR R L KG
Sbjct: 756 YEQPTKDGIDNSNIGNKMLQAMGWKEGSGLGRKSQGITAPIQA-QVRMRGAGLGAKGSSY 814
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
+N ++++ + ++A +R E +
Sbjct: 815 GVNTS-DSYKDAVRKAMFARFSEME 838
>UNIPROTKB|E1BXK5 [details] [associations]
symbol:E1BXK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
OMA:TADSYKD EMBL:AADN02056427 EMBL:AADN02056428 EMBL:AADN02056429
IPI:IPI00585702 Ensembl:ENSGALT00000007370 Uniprot:E1BXK5
Length = 810
Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRERED----LYKGV 64
Y + + LD SN G++ML+ MGW G+GLG K QGI API GG + +
Sbjct: 727 YEQPTKDGLDNSNIGNKMLQAMGWREGSGLGRKCQGITAPIEGGMAGFKPAAVGFVSSSY 786
Query: 65 GVSLNDPYENFRKSKKQAFISRMKERQ 91
GVS D Y++ + ++A +R E +
Sbjct: 787 GVSTADSYKD---AVRKAMFARFTEME 810
>UNIPROTKB|G3MYW2 [details] [associations]
symbol:NKRF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR001159 InterPro:IPR001374
Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174 PROSITE:PS51061
SMART:SM00358 SMART:SM00393 SMART:SM00443 InterPro:IPR014720
GO:GO:0005737 GO:GO:0045892 GO:GO:0005730 Gene3D:3.30.160.20
GO:GO:0003725 GeneTree:ENSGT00530000063234 OMA:SIQACKT
EMBL:DAAA02067142 EMBL:DAAA02067143 UniGene:Bt.2958
Ensembl:ENSBTAT00000065879 Uniprot:G3MYW2
Length = 690
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE G+G+ + +
Sbjct: 547 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKRE----GLGLDV-ERVNKI 601
Query: 76 RKSKKQAFISRMKERQEHT 94
K + I + HT
Sbjct: 602 AKRDIEQIIRNYARSESHT 620
>UNIPROTKB|O15226 [details] [associations]
symbol:NKRF "NF-kappa-B-repressing factor" species:9606
"Homo sapiens" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000467 InterPro:IPR001159 InterPro:IPR001374
Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174 PROSITE:PS51061
SMART:SM00358 SMART:SM00393 SMART:SM00443 InterPro:IPR014720
GO:GO:0005634 GO:GO:0045892 GO:GO:0005730 GO:GO:0003677
Gene3D:3.30.160.20 GO:GO:0006351 GO:GO:0003725 EMBL:AJ011812
EMBL:AY208891 EMBL:BC040379 EMBL:BC047878 EMBL:Y07707
IPI:IPI00005675 RefSeq:NP_001166958.1 RefSeq:NP_001166959.1
RefSeq:NP_060014.2 UniGene:Hs.437084 ProteinModelPortal:O15226
SMR:O15226 DIP:DIP-34570N IntAct:O15226 STRING:O15226
PhosphoSite:O15226 SWISS-2DPAGE:O15226 PaxDb:O15226
PeptideAtlas:O15226 PRIDE:O15226 Ensembl:ENST00000304449
Ensembl:ENST00000371527 GeneID:55922 KEGG:hsa:55922 UCSC:uc004erq.3
CTD:55922 GeneCards:GC0XM118722 HGNC:HGNC:19374 HPA:HPA001476
MIM:300440 neXtProt:NX_O15226 PharmGKB:PA134990602 eggNOG:NOG123689
HOGENOM:HOG000230930 HOVERGEN:HBG052630 InParanoid:O15226
OrthoDB:EOG4M65H5 PhylomeDB:O15226 ChEMBL:CHEMBL3163
GenomeRNAi:55922 NextBio:61327 ArrayExpress:O15226 Bgee:O15226
CleanEx:HS_NKRF Genevestigator:O15226 GermOnline:ENSG00000186416
Uniprot:O15226
Length = 690
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE G+G+ + +
Sbjct: 547 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKRE----GLGLDV-ERVNKI 601
Query: 76 RKSKKQAFISRMKERQEHT 94
K + I + HT
Sbjct: 602 AKRDIEQIIRNYARSESHT 620
>UNIPROTKB|K7GNC7 [details] [associations]
symbol:NKRF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR001159 InterPro:IPR001374
Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174 PROSITE:PS51061
SMART:SM00358 SMART:SM00393 SMART:SM00443 InterPro:IPR014720
Gene3D:3.30.160.20 GeneTree:ENSGT00530000063234 EMBL:CU467108
EMBL:CU915797 EMBL:GACC01000158 RefSeq:XP_001927218.3
Ensembl:ENSSSCT00000036344 GeneID:100155370 Uniprot:K7GNC7
Length = 690
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE G+G+ + +
Sbjct: 547 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKRE----GLGLDV-ERVNKI 601
Query: 76 RKSKKQAFISRMKERQEHT 94
K + I + HT
Sbjct: 602 AKRDIEQIIRNYARSESHT 620
>UNIPROTKB|G3V1N1 [details] [associations]
symbol:NKRF "NF-kappa-B-repressing factor" species:9606
"Homo sapiens" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR001159
InterPro:IPR001374 Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174
PROSITE:PS51061 SMART:SM00358 SMART:SM00393 SMART:SM00443
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:CH471161 RefSeq:NP_001166958.1 UniGene:Hs.437084 GeneID:55922
KEGG:hsa:55922 CTD:55922 HGNC:HGNC:19374 GenomeRNAi:55922
NextBio:61327 EMBL:AC004913 ProteinModelPortal:G3V1N1 SMR:G3V1N1
Ensembl:ENST00000542113 OMA:SIQACKT ArrayExpress:G3V1N1 Bgee:G3V1N1
Uniprot:G3V1N1
Length = 705
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE G+G+ + +
Sbjct: 562 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKRE----GLGLDV-ERVNKI 616
Query: 76 RKSKKQAFISRMKERQEHT 94
K + I + HT
Sbjct: 617 AKRDIEQIIRNYARSESHT 635
>UNIPROTKB|E2RI67 [details] [associations]
symbol:NKRF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR001159
InterPro:IPR001374 Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174
PROSITE:PS51061 SMART:SM00358 SMART:SM00393 SMART:SM00443
InterPro:IPR014720 GO:GO:0005737 GO:GO:0045892 GO:GO:0005730
Gene3D:3.30.160.20 GO:GO:0003725 GeneTree:ENSGT00530000063234
InterPro:IPR021859 Pfam:PF11952 OMA:SIQACKT EMBL:AAEX03026829
Ensembl:ENSCAFT00000029243 Uniprot:E2RI67
Length = 784
Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE G+G+ + +
Sbjct: 641 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKRE----GLGLDV-ERVNKI 695
Query: 76 RKSKKQAFISRMKERQEHT 94
K + I + HT
Sbjct: 696 AKRDIEQIIRNYARSESHT 714
>UNIPROTKB|F1RUA0 [details] [associations]
symbol:NKRF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR001159 InterPro:IPR001374
Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174 PROSITE:PS51061
SMART:SM00358 SMART:SM00393 SMART:SM00443 InterPro:IPR014720
GO:GO:0005737 GO:GO:0045892 GO:GO:0005730 Gene3D:3.30.160.20
GO:GO:0003725 GeneTree:ENSGT00530000063234 InterPro:IPR021859
Pfam:PF11952 OMA:SIQACKT EMBL:CU467108 EMBL:CU915797
Ensembl:ENSSSCT00000013799 Uniprot:F1RUA0
Length = 784
Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE G+G+ + +
Sbjct: 641 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKRE----GLGLDV-ERVNKI 695
Query: 76 RKSKKQAFISRMKERQEHT 94
K + I + HT
Sbjct: 696 AKRDIEQIIRNYARSESHT 714
>UNIPROTKB|Q8IWZ8 [details] [associations]
symbol:SUGP1 "SURP and G-patch domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701
EMBL:AF521128 EMBL:AY072916 EMBL:AY072917 EMBL:AC004475
EMBL:BC063784 EMBL:AL137286 EMBL:AL713757 IPI:IPI00103419
IPI:IPI00337787 PIR:T02299 RefSeq:NP_757386.2 UniGene:Hs.515274
ProteinModelPortal:Q8IWZ8 SMR:Q8IWZ8 IntAct:Q8IWZ8
MINT:MINT-3047702 STRING:Q8IWZ8 PhosphoSite:Q8IWZ8 DMDM:61216666
PaxDb:Q8IWZ8 PRIDE:Q8IWZ8 Ensembl:ENST00000247001
Ensembl:ENST00000334782 GeneID:57794 KEGG:hsa:57794 UCSC:uc002nmh.3
CTD:57794 GeneCards:GC19M019389 HGNC:HGNC:18643 HPA:HPA004890
MIM:607992 neXtProt:NX_Q8IWZ8 PharmGKB:PA165394338
HOVERGEN:HBG079172 InParanoid:Q8IWZ8 OMA:EKVAMEN OrthoDB:EOG4VX24Z
PhylomeDB:Q8IWZ8 ChiTaRS:SUGP1 GenomeRNAi:57794 NextBio:64730
ArrayExpress:Q8IWZ8 Bgee:Q8IWZ8 CleanEx:HS_SF4
Genevestigator:Q8IWZ8 GermOnline:ENSG00000105705 Uniprot:Q8IWZ8
Length = 645
Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG++ QGI+ P++ G G G ++ P E
Sbjct: 559 KLTVENIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTT-----VDGAGFGIDRPAELS 613
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 614 KEDDEYEAFRKRM 626
Score = 31 (16.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MKAGHPGGAYGKSGVEKL 18
+K P GA + +EKL
Sbjct: 178 IKVSPPEGAETRKVIEKL 195
>MGI|MGI:1924536 [details] [associations]
symbol:Nkrf "NF-kappaB repressing factor" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] InterPro:IPR000467
InterPro:IPR001159 InterPro:IPR001374 Pfam:PF01424 Pfam:PF01585
PROSITE:PS50174 PROSITE:PS51061 SMART:SM00358 SMART:SM00393
SMART:SM00443 InterPro:IPR014720 MGI:MGI:1924536 GO:GO:0005737
GO:GO:0045892 GO:GO:0005730 GO:GO:0003677 Gene3D:3.30.160.20
GO:GO:0006351 GO:GO:0003725 GeneTree:ENSGT00530000063234
EMBL:AL450399 CTD:55922 eggNOG:NOG123689 HOGENOM:HOG000230930
HOVERGEN:HBG052630 OrthoDB:EOG4M65H5 EMBL:AK020455 EMBL:AK042690
EMBL:AK079123 EMBL:BC138828 EMBL:BC138829 IPI:IPI00400329
RefSeq:NP_084167.2 UniGene:Mm.21649 ProteinModelPortal:Q8BY02
SMR:Q8BY02 STRING:Q8BY02 PhosphoSite:Q8BY02 PRIDE:Q8BY02
Ensembl:ENSMUST00000057093 GeneID:77286 KEGG:mmu:77286
InParanoid:A2A3V7 ChiTaRS:NKRF NextBio:346701 Bgee:Q8BY02
CleanEx:MM_NKRF Genevestigator:Q8BY02 GermOnline:ENSMUSG00000044149
Uniprot:Q8BY02
Length = 690
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDL 60
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE L
Sbjct: 547 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKREGL 591
>RGD|1563950 [details] [associations]
symbol:Nkrf "NFKB repressing factor" species:10116 "Rattus
norvegicus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
InterPro:IPR000467 InterPro:IPR001159 InterPro:IPR001374
Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174 PROSITE:PS51061
SMART:SM00358 SMART:SM00393 SMART:SM00443 InterPro:IPR014720
RGD:1563950 GO:GO:0005737 GO:GO:0045892 GO:GO:0005730
Gene3D:3.30.160.20 GO:GO:0003725 GeneTree:ENSGT00530000063234
OrthoDB:EOG4M65H5 IPI:IPI00358660 PRIDE:D3ZSG0
Ensembl:ENSRNOT00000016660 UCSC:RGD:1563950 Uniprot:D3ZSG0
Length = 690
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDL 60
+++ E N G+Q+L++MGW G GLG +GI PIS E +RE L
Sbjct: 547 QQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKREGL 591
>UNIPROTKB|E2RCV3 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585
Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 KO:K13096 CTD:57794 GeneTree:ENSGT00410000025695
EMBL:AAEX03012271 RefSeq:XP_864993.2 Ensembl:ENSCAFT00000022747
GeneID:476661 KEGG:cfa:476661 Uniprot:E2RCV3
Length = 636
Score = 101 (40.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG++ QGI+ P++ G G G ++ P E
Sbjct: 550 KLTVENIGYQMLMKMGWKEGDGLGSEGQGIKNPVNKGTTT-----VDGAGFGIDRPAELS 604
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 605 KEDDEYEAFRKRM 617
Score = 31 (16.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MKAGHPGGAYGKSGVEKL 18
+K P GA + +EKL
Sbjct: 169 IKVSPPEGAETRKVIEKL 186
>UNIPROTKB|J9P8U4 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:AAEX03012271
Ensembl:ENSCAFT00000049900 Uniprot:J9P8U4
Length = 640
Score = 101 (40.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG++ QGI+ P++ G G G ++ P E
Sbjct: 554 KLTVENIGYQMLMKMGWKEGDGLGSEGQGIKNPVNKGTTT-----VDGAGFGIDRPAELS 608
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 609 KEDDEYEAFRKRM 621
Score = 31 (16.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MKAGHPGGAYGKSGVEKL 18
+K P GA + +EKL
Sbjct: 173 IKVSPPEGAETRKVIEKL 190
>MGI|MGI:2678085 [details] [associations]
symbol:Sugp2 "SURP and G patch domain containing 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585
Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443
SMART:SM00648 MGI:MGI:2678085 GO:GO:0005634 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 SUPFAM:SSF109905
GeneTree:ENSGT00410000025695 CTD:10147 eggNOG:NOG313244
HOVERGEN:HBG079176 KO:K13166 OMA:IEIIKWA OrthoDB:EOG4QFWCG
ChiTaRS:SUGP2 EMBL:AF518875 EMBL:AK042293 EMBL:BC023276
EMBL:BC042763 EMBL:BC057305 IPI:IPI00405760 RefSeq:NP_001161762.1
RefSeq:NP_766343.3 UniGene:Mm.284505 ProteinModelPortal:Q8CH09
SMR:Q8CH09 STRING:Q8CH09 PhosphoSite:Q8CH09 PaxDb:Q8CH09
PRIDE:Q8CH09 Ensembl:ENSMUST00000093458 Ensembl:ENSMUST00000131489
Ensembl:ENSMUST00000164403 GeneID:234373 KEGG:mmu:234373
UCSC:uc009lzk.2 InParanoid:Q8CH09 NextBio:382135 Bgee:Q8CH09
CleanEx:MM_SFRS14 Genevestigator:Q8CH09
GermOnline:ENSMUSG00000036054 Uniprot:Q8CH09
Length = 1067
Score = 112 (44.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G + E E L D ++
Sbjct: 992 QKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGALSEGEGLGADGPEQKEDTFDV 1051
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1052 FRQRMMQMY 1060
>RGD|1306042 [details] [associations]
symbol:Sugp2 "SURP and G patch domain containing 2"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
RGD:1306042 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
EMBL:CH474031 GeneTree:ENSGT00410000025695 CTD:10147 KO:K13166
OMA:IEIIKWA OrthoDB:EOG4QFWCG IPI:IPI00364626 RefSeq:NP_001101867.1
UniGene:Rn.8664 Ensembl:ENSRNOT00000027457 GeneID:361126
KEGG:rno:361126 UCSC:RGD:1306042 NextBio:675301 Uniprot:D3ZJH2
Length = 1068
Score = 112 (44.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G + E E L D ++
Sbjct: 993 QKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTLSEGEGLGADGPEQKEDTFDV 1052
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1053 FRQRMMQMY 1061
>UNIPROTKB|A4FV64 [details] [associations]
symbol:SF4 "SF4 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
KO:K13096 eggNOG:NOG299701 CTD:57794 HOVERGEN:HBG079172 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:DAAA02019030 EMBL:BC123792
IPI:IPI00838095 RefSeq:NP_001096748.1 UniGene:Bt.61513 SMR:A4FV64
STRING:A4FV64 Ensembl:ENSBTAT00000049124 GeneID:533971
KEGG:bta:533971 HOGENOM:HOG000253953 NextBio:20876213
Uniprot:A4FV64
Length = 635
Score = 100 (40.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG++ QGI+ P++ G G G ++ P E
Sbjct: 549 KLTIENIGYQMLMKMGWKEGDGLGSEGQGIKNPVNKGTTT-----VDGAGFGIDRPAELS 603
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 604 KEDDEYEAFRKRM 616
Score = 31 (16.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MKAGHPGGAYGKSGVEKL 18
+K P GA + +EKL
Sbjct: 168 IKVSPPEGAETRKVIEKL 185
>FB|FBgn0051301 [details] [associations]
symbol:CG31301 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR001374 Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174
PROSITE:PS51061 SMART:SM00443 EMBL:AE014297 GO:GO:0003676
GeneTree:ENSGT00530000063234 InterPro:IPR021859 Pfam:PF11952
eggNOG:NOG123689 EMBL:AY051823 RefSeq:NP_650449.1 UniGene:Dm.1210
SMR:Q9VF83 STRING:Q9VF83 EnsemblMetazoa:FBtr0083087 GeneID:41865
KEGG:dme:Dmel_CG31301 UCSC:CG31301-RA FlyBase:FBgn0051301
InParanoid:Q9VF83 OMA:EEHWELR OrthoDB:EOG44F4S1 GenomeRNAi:41865
NextBio:825993 Uniprot:Q9VF83
Length = 439
Score = 107 (42.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 17 KLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPI 49
KLD SNKG++M++ MGW G GLG +QG E P+
Sbjct: 279 KLDPSNKGYRMMRLMGWTGGGLGRLKQGREEPV 311
>UNIPROTKB|F1NL52 [details] [associations]
symbol:NKRF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000467 InterPro:IPR001159 InterPro:IPR001374
Pfam:PF01424 Pfam:PF01585 PROSITE:PS50174 PROSITE:PS51061
SMART:SM00358 SMART:SM00393 SMART:SM00443 InterPro:IPR014720
GO:GO:0005737 GO:GO:0045892 GO:GO:0005730 Gene3D:3.30.160.20
GO:GO:0003725 GeneTree:ENSGT00530000063234 InterPro:IPR021859
Pfam:PF11952 OMA:SIQACKT EMBL:AADN02013623 IPI:IPI00578901
Ensembl:ENSGALT00000014085 Uniprot:F1NL52
Length = 766
Score = 110 (43.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 16 EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDL 60
+K+ E N G+Q+L++MGW G GLG +GI PIS E +RE L
Sbjct: 623 QKIKEDNIGNQILRKMGWTGGGLGKDGEGIREPISVKEQFKREGL 667
>UNIPROTKB|E1BE55 [details] [associations]
symbol:SUGP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000467
Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174
SMART:SM00443 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 GeneTree:ENSGT00410000025695 CTD:10147 KO:K13166
OMA:IEIIKWA EMBL:DAAA02019034 IPI:IPI00729451 RefSeq:XP_002688569.1
RefSeq:XP_884815.4 Ensembl:ENSBTAT00000017672 GeneID:516567
KEGG:bta:516567 NextBio:20872261 Uniprot:E1BE55
Length = 1096
Score = 111 (44.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G E E L D ++
Sbjct: 1021 QKLTDKNLGFQMLQKMGWKEGHGLGSCGKGIREPVSVGSASEGEGLGADGQEHKEDTFDV 1080
Query: 75 FRKSKKQAFISR 86
FR+ Q + R
Sbjct: 1081 FRQRMMQMYRHR 1092
>WB|WBGene00013224 [details] [associations]
symbol:Y55D9A.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF01585 PROSITE:PS50174
SMART:SM00443 GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
eggNOG:NOG270400 GeneTree:ENSGT00510000046476 EMBL:AL032649
PIR:T27191 RefSeq:NP_502415.1 ProteinModelPortal:Q95Q15 SMR:Q95Q15
IntAct:Q95Q15 STRING:Q95Q15 PaxDb:Q95Q15 PRIDE:Q95Q15
EnsemblMetazoa:Y55D9A.2b GeneID:178216 KEGG:cel:CELE_Y55D9A.2
UCSC:Y55D9A.2a CTD:178216 WormBase:Y55D9A.2b HOGENOM:HOG000020034
InParanoid:Q95Q15 OMA:FKLLKSM NextBio:900202 ArrayExpress:Q95Q15
Uniprot:Q95Q15
Length = 511
Score = 106 (42.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 18 LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFR 76
LD N G ++LK MGW G GLG ++QG P++ EV+ KG+G + +P
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVAT-EVKNNR---KGLGANEKEPPT--- 483
Query: 77 KSKKQAFISRMKERQEHTRGAE 98
KS K + + K+R R E
Sbjct: 484 KSYKDQVLEKTKQRFNEVRKCE 505
>UNIPROTKB|J9P3P4 [details] [associations]
symbol:SUGP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 GeneTree:ENSGT00410000025695
EMBL:AAEX03012272 EMBL:AAEX03012273 Ensembl:ENSCAFT00000043444
Uniprot:J9P3P4
Length = 1043
Score = 109 (43.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G E E L D ++
Sbjct: 968 QKLTDKNLGFQMLQKMGWKEGHGLGSCGKGIREPVSVGTASEGEGLGADGQEHKEDTFDV 1027
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1028 FRQRMMQMY 1036
>UNIPROTKB|E2RGL4 [details] [associations]
symbol:SUGP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 GeneTree:ENSGT00410000025695
EMBL:AAEX03012272 EMBL:AAEX03012273 Ensembl:ENSCAFT00000022960
Uniprot:E2RGL4
Length = 1082
Score = 109 (43.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G E E L D ++
Sbjct: 1007 QKLTDKNLGFQMLQKMGWKEGHGLGSCGKGIREPVSVGTASEGEGLGADGQEHKEDTFDV 1066
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1067 FRQRMMQMY 1075
>UNIPROTKB|E2RGP1 [details] [associations]
symbol:SUGP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 GeneTree:ENSGT00410000025695
CTD:10147 KO:K13166 OMA:IEIIKWA EMBL:AAEX03012272 EMBL:AAEX03012273
RefSeq:XP_852169.1 Ensembl:ENSCAFT00000022946 GeneID:487882
KEGG:cfa:487882 Uniprot:E2RGP1
Length = 1095
Score = 109 (43.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G E E L D ++
Sbjct: 1020 QKLTDKNLGFQMLQKMGWKEGHGLGSCGKGIREPVSVGTASEGEGLGADGQEHKEDTFDV 1079
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1080 FRQRMMQMY 1088
>UNIPROTKB|I3LFJ5 [details] [associations]
symbol:SUGP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000467
Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174
SMART:SM00443 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 GeneTree:ENSGT00410000025695 CTD:10147 KO:K13166
OMA:IEIIKWA EMBL:CU640483 RefSeq:XP_003123593.3
Ensembl:ENSSSCT00000025508 GeneID:100511863 KEGG:ssc:100511863
Uniprot:I3LFJ5
Length = 1095
Score = 109 (43.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G E E L D ++
Sbjct: 1020 QKLTDKNLGFQMLQKMGWKEGHGLGSCGKGIREPVSVGTASEGEGLGADGQEHKEDTFDV 1079
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1080 FRQRMMQMY 1088
>UNIPROTKB|Q8IX01 [details] [associations]
symbol:SUGP2 "SURP and G-patch domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
SUPFAM:SSF109905 EMBL:AF518874 EMBL:AB002363 EMBL:BX647813
EMBL:AL832488 EMBL:AC004447 EMBL:BC020586 IPI:IPI00158020
IPI:IPI00293162 IPI:IPI00554438 PIR:T03030 RefSeq:NP_001017392.2
RefSeq:NP_055699.2 UniGene:Hs.515271 PDB:1X4P PDBsum:1X4P
ProteinModelPortal:Q8IX01 SMR:Q8IX01 IntAct:Q8IX01
MINT:MINT-2867991 STRING:Q8IX01 PhosphoSite:Q8IX01 DMDM:308153496
PaxDb:Q8IX01 PRIDE:Q8IX01 Ensembl:ENST00000330854
Ensembl:ENST00000337018 Ensembl:ENST00000452918 GeneID:10147
KEGG:hsa:10147 UCSC:uc002nkx.2 CTD:10147 GeneCards:GC19M019103
H-InvDB:HIX0014931 HGNC:HGNC:18641 HPA:HPA041557 MIM:607993
neXtProt:NX_Q8IX01 PharmGKB:PA165394371 eggNOG:NOG313244
HOGENOM:HOG000168519 HOVERGEN:HBG079176 InParanoid:Q8IX01 KO:K13166
OMA:IEIIKWA OrthoDB:EOG4QFWCG PhylomeDB:Q8IX01 ChiTaRS:SUGP2
EvolutionaryTrace:Q8IX01 GenomeRNAi:10147 NextBio:38397
ArrayExpress:Q8IX01 Bgee:Q8IX01 CleanEx:HS_SFRS14
Genevestigator:Q8IX01 GermOnline:ENSG00000064607 Uniprot:Q8IX01
Length = 1082
Score = 108 (43.1 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYEN 74
+KL + N G QML++MGW G GLG+ +GI P+S G E E L D ++
Sbjct: 1007 QKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHKEDTFDV 1066
Query: 75 FRKSKKQAF 83
FR+ Q +
Sbjct: 1067 FRQRMMQMY 1075
>DICTYBASE|DDB_G0286951 [details] [associations]
symbol:DDB_G0286951 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
dictyBase:DDB_G0286951 GO:GO:0003676 EMBL:AAFI02000092
RefSeq:XP_637483.1 EnsemblProtists:DDB0187208 GeneID:8625882
KEGG:ddi:DDB_G0286951 InParanoid:Q54L20 OMA:PLWPMSK Uniprot:Q54L20
Length = 1110
Score = 108 (43.1 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 14 GVEKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDL 60
G+ + +N G +LK+MGW G GLG QG+E PI +ER L
Sbjct: 1061 GIAAIPSTNIGSSLLKKMGWSGGGLGVNGQGLEEPIKAVVKKERSGL 1107
>UNIPROTKB|Q1RMU5 [details] [associations]
symbol:RBM5 "RNA-binding protein 5" species:9913 "Bos
taurus" [GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0043065 "positive
regulation of apoptotic process" evidence=ISS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS00028 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0005634 GO:GO:0006915
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381
eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094 HOGENOM:HOG000046285
EMBL:BC114706 IPI:IPI00731526 RefSeq:NP_001039839.1
UniGene:Bt.76139 ProteinModelPortal:Q1RMU5 STRING:Q1RMU5
PRIDE:Q1RMU5 Ensembl:ENSBTAT00000008305 GeneID:534216
KEGG:bta:534216 CTD:10181 InParanoid:Q1RMU5 OMA:TADSYKD
OrthoDB:EOG4VT5WV NextBio:20876310 Uniprot:Q1RMU5
Length = 815
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR + L KG
Sbjct: 733 YEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEA-QVRLKGAGLGAKGSAY 791
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
L+ ++++ + ++A +R E +
Sbjct: 792 GLSGA-DSYKDAVRKAMFARFTEME 815
>UNIPROTKB|E2QUP3 [details] [associations]
symbol:RBM5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0043065
GeneTree:ENSGT00510000046476 GO:GO:0000245 GO:GO:0000381 KO:K13094
CTD:10181 OMA:TADSYKD EMBL:AAEX03012225 RefSeq:XP_861224.2
ProteinModelPortal:E2QUP3 Ensembl:ENSCAFT00000017309 GeneID:476618
KEGG:cfa:476618 NextBio:20852241 Uniprot:E2QUP3
Length = 815
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR + L KG
Sbjct: 733 YEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEA-QVRLKGAGLGAKGSAY 791
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
L+ ++++ + ++A +R E +
Sbjct: 792 GLSGA-DSYKDAVRKAMFARFTEME 815
>UNIPROTKB|P52756 [details] [associations]
symbol:RBM5 "RNA-binding protein 5" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=TAS] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA;TAS] [GO:0005681 "spliceosomal complex"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0003677
"DNA binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR007087
InterPro:IPR012677 InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585
PROSITE:PS00028 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157
PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355 SMART:SM00360
SMART:SM00443 SMART:SM00547 GO:GO:0006915 GO:GO:0008285
GO:GO:0005654 GO:GO:0000166 EMBL:CH471055 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065 GO:GO:0000245
GO:GO:0000381 eggNOG:NOG290849 HOVERGEN:HBG000318 KO:K13094
CTD:10181 OMA:TADSYKD OrthoDB:EOG4VT5WV EMBL:U23946 EMBL:AF091263
EMBL:AF103802 EMBL:AF107493 EMBL:AK297249 EMBL:AK297445
EMBL:AK302766 EMBL:AK314032 EMBL:U73168 IPI:IPI00005036
IPI:IPI00796867 IPI:IPI00927051 IPI:IPI00930333 IPI:IPI00930619
RefSeq:NP_005769.1 UniGene:Hs.439480 PDB:2LK0 PDB:2LK1 PDB:2LKZ
PDBsum:2LK0 PDBsum:2LK1 PDBsum:2LKZ ProteinModelPortal:P52756
SMR:P52756 DIP:DIP-47277N IntAct:P52756 MINT:MINT-1406668
STRING:P52756 PhosphoSite:P52756 DMDM:13124794 PaxDb:P52756
PRIDE:P52756 Ensembl:ENST00000347869 Ensembl:ENST00000469838
GeneID:10181 KEGG:hsa:10181 UCSC:uc003cyg.3 GeneCards:GC03P050101
HGNC:HGNC:9902 HPA:HPA017335 HPA:HPA018011 MIM:606884
neXtProt:NX_P52756 PharmGKB:PA34267 InParanoid:P52756
PhylomeDB:P52756 ChiTaRS:RBM5 GenomeRNAi:10181 NextBio:38542
ArrayExpress:P52756 Bgee:P52756 Genevestigator:P52756
GermOnline:ENSG00000003756 Uniprot:P52756
Length = 815
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR + L KG
Sbjct: 733 YEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEA-QVRLKGAGLGAKGSAY 791
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
L+ ++++ + ++A +R E +
Sbjct: 792 GLSGA-DSYKDAVRKAMFARFTEME 815
>MGI|MGI:1933204 [details] [associations]
symbol:Rbm5 "RNA binding motif protein 5" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
PROSITE:PS50199 SMART:SM00355 SMART:SM00360 SMART:SM00443
SMART:SM00547 MGI:MGI:1933204 GO:GO:0005634 GO:GO:0006915
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043065
GeneTree:ENSGT00510000046476 PDB:2CLV PDB:2OL3 PDBsum:2CLV
PDBsum:2OL3 GO:GO:0000245 GO:GO:0000381 eggNOG:NOG290849
HOVERGEN:HBG000318 KO:K13094 HOGENOM:HOG000046285 CTD:10181
OMA:TADSYKD OrthoDB:EOG4VT5WV EMBL:AJ309168 EMBL:AK134183
EMBL:AK146880 EMBL:BC003988 EMBL:BC023854 EMBL:BC031899
EMBL:BC043058 EMBL:BC054729 IPI:IPI00130160 IPI:IPI00798508
RefSeq:NP_683732.1 UniGene:Mm.259197 ProteinModelPortal:Q91YE7
SMR:Q91YE7 STRING:Q91YE7 PhosphoSite:Q91YE7 PaxDb:Q91YE7
PRIDE:Q91YE7 Ensembl:ENSMUST00000035199 GeneID:83486 KEGG:mmu:83486
UCSC:uc009rmv.2 UCSC:uc009rmw.2 InParanoid:Q91YE7
EvolutionaryTrace:Q91YE7 NextBio:350596 Bgee:Q91YE7 CleanEx:MM_RBM5
Genevestigator:Q91YE7 GermOnline:ENSMUSG00000032580 Uniprot:Q91YE7
Length = 815
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR + L KG
Sbjct: 733 YEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEA-QVRLKGAGLGAKGSAY 791
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
L+ ++++ + ++A +R E +
Sbjct: 792 GLSGA-DSYKDAVRKAMFARFTEME 815
>RGD|1305059 [details] [associations]
symbol:Rbm5 "RNA binding motif protein 5" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=ISO;ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS00028 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547 RGD:1305059
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043065 EMBL:CH473954 GeneTree:ENSGT00510000046476
GO:GO:0000245 GO:GO:0000381 eggNOG:NOG290849 KO:K13094
HOGENOM:HOG000046285 CTD:10181 OrthoDB:EOG4VT5WV EMBL:BC166477
IPI:IPI00193008 RefSeq:NP_001094018.1 UniGene:Rn.17033
ProteinModelPortal:B2GV05 STRING:B2GV05 PhosphoSite:B2GV05
PRIDE:B2GV05 Ensembl:ENSRNOT00000024529 GeneID:300996
KEGG:rno:300996 UCSC:RGD:1305059 NextBio:647878 ArrayExpress:B2GV05
Genevestigator:B2GV05 Uniprot:B2GV05
Length = 815
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR + L KG
Sbjct: 733 YEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEA-QVRLKGAGLGAKGSAY 791
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
L+ ++++ + ++A +R E +
Sbjct: 792 GLSGA-DSYKDAVRKAMFARFTEME 815
>UNIPROTKB|F1NAQ9 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
OMA:EKVAMEN GeneTree:ENSGT00410000025695 EMBL:AADN02071815
IPI:IPI00580066 Ensembl:ENSGALT00000004744 Uniprot:F1NAQ9
Length = 619
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG+ QGI+ P+S G G G ++ P E
Sbjct: 533 KLTVENIGYQMLMKMGWKEGEGLGSDGQGIKNPVSKGTTA-----VDGAGFGIDRPAELT 587
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 588 KEDDEYEAFRKRM 600
>UNIPROTKB|F1NFM6 [details] [associations]
symbol:PINX1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0007080 "mitotic metaphase plate congression"
evidence=IEA] [GO:0070034 "telomeric RNA binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0005739 GO:GO:0005730 GO:GO:0000776 GO:GO:0005819
GO:GO:0000781 GO:GO:0000228 GO:GO:0007004 GO:GO:0007080
GO:GO:0070034 GeneTree:ENSGT00450000040279 EMBL:AADN02018316
EMBL:AADN02018314 EMBL:AADN02018315 IPI:IPI00598699
Ensembl:ENSGALT00000026871 OMA:QGNTEHI Uniprot:F1NFM6
Length = 99
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 19 DESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFRK 77
DES G +ML++MGW G GLGA+EQG I +V+ + ++ G+G S+ YE+
Sbjct: 23 DESKFGQRMLEKMGWSKGKGLGAQEQGNTEHI---KVQVKNNML-GLGASIK--YEDSWI 76
Query: 78 SKKQAFISRMKERQE-HTRG 96
+ + F + E + H +G
Sbjct: 77 AHQDDFNQLLAELNDCHGQG 96
>TAIR|locus:2083750 [details] [associations]
symbol:AT3G52120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA;ISS] InterPro:IPR000061 InterPro:IPR000467
Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174
SMART:SM00443 SMART:SM00648 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
EMBL:AL049711 SUPFAM:SSF109905 PIR:T49091 KO:K13096 EMBL:AY037259
EMBL:AY094004 IPI:IPI00529054 RefSeq:NP_566957.1 UniGene:At.53
UniGene:At.63607 ProteinModelPortal:Q94C11 SMR:Q94C11 STRING:Q94C11
PRIDE:Q94C11 EnsemblPlants:AT3G52120.1 GeneID:824376
KEGG:ath:AT3G52120 TAIR:At3g52120 eggNOG:NOG299701
HOGENOM:HOG000064592 InParanoid:Q94C11 OMA:TRQRNPG PhylomeDB:Q94C11
ProtClustDB:CLSN2917419 Genevestigator:Q94C11 GermOnline:AT3G52120
Uniprot:Q94C11
Length = 443
Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSL------- 68
K+ N GH++L +MGW G G+G+ +G+ PI G+V+ GVG S
Sbjct: 357 KIQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNN---LGVGASAPGEVKPE 413
Query: 69 NDPYENFRK 77
+D YE ++K
Sbjct: 414 DDIYEQYKK 422
>UNIPROTKB|F1SPQ8 [details] [associations]
symbol:RBM5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199 SMART:SM00355
SMART:SM00360 SMART:SM00443 SMART:SM00547 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043065 GeneTree:ENSGT00510000046476 GO:GO:0000245
GO:GO:0000381 KO:K13094 CTD:10181 OMA:TADSYKD EMBL:CU861627
RefSeq:XP_003132269.3 UniGene:Ssc.49591 Ensembl:ENSSSCT00000012473
GeneID:100515237 KEGG:ssc:100515237 Uniprot:F1SPQ8
Length = 815
Score = 104 (41.7 bits), Expect = 0.00014, P = 0.00014
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 10 YGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVRER-EDL-YKGVGV 66
Y + + +D SN G++ML+ MGW G+GLG K QGI API +VR + L KG
Sbjct: 733 YEQPTKDGIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEA-QVRLKGAGLGAKGSAY 791
Query: 67 SLNDPYENFRKSKKQAFISRMKERQ 91
L ++++ + ++A +R E +
Sbjct: 792 GLTGA-DSYKDAVRKAMFARFTEME 815
>ZFIN|ZDB-GENE-030616-73 [details] [associations]
symbol:nkrf "NF-kappa B repressing factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR001159
InterPro:IPR001374 Pfam:PF00035 Pfam:PF01424 Pfam:PF01585
PROSITE:PS50174 PROSITE:PS51061 SMART:SM00358 SMART:SM00443
InterPro:IPR014720 ZFIN:ZDB-GENE-030616-73 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 InterPro:IPR021859 Pfam:PF11952
eggNOG:NOG123689 HOGENOM:HOG000230930 HOVERGEN:HBG052630
OrthoDB:EOG4M65H5 EMBL:BC163533 IPI:IPI00500526 UniGene:Dr.116757
UniGene:Dr.52876 ArrayExpress:B3DJM2 Uniprot:B3DJM2
Length = 861
Score = 104 (41.7 bits), Expect = 0.00015, P = 0.00015
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 11 GKSGV-EKLDESNKGHQMLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN 69
G+ V +++ E N G+Q+L++MGW G GLG + GI PI E RE G+G+ ++
Sbjct: 711 GEEAVRQEIKEDNIGNQLLRKMGWTGGGLGREGDGIAEPIKVKEQFTRE----GLGMDMD 766
Query: 70 DPYENFRKSKKQAFISRM--KERQEHTR 95
K + I ERQ+ R
Sbjct: 767 RHGSQLTKRDIEDIIRNYASSERQDDLR 794
>TAIR|locus:505006587 [details] [associations]
symbol:AT5G08535 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000467
Pfam:PF01585 PROSITE:PS50174 SMART:SM00443 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003676 EMBL:AK118260
IPI:IPI00521879 RefSeq:NP_568199.1 UniGene:At.28760 PRIDE:Q8GXG0
EnsemblPlants:AT5G08535.1 GeneID:830753 KEGG:ath:AT5G08535
TAIR:At5g08535 eggNOG:NOG301240 HOGENOM:HOG000077546
InParanoid:Q8GXG0 OMA:FFREFWP PhylomeDB:Q8GXG0
ProtClustDB:CLSN2717629 Genevestigator:Q8GXG0 Uniprot:Q8GXG0
Length = 141
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 30/101 (29%), Positives = 47/101 (46%)
Query: 4 GHPGGAYGKSGVEKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYK 62
G G+ S + ++ SN G Q+LK+ GW G GLG EQGI P+ E + + +
Sbjct: 27 GESSGS--SSSLAAINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNK---R 80
Query: 63 GVGVS------LNDPYENFRKSKKQA--FISRMKERQEHTR 95
GVG + P + KQ+ +M++ EH +
Sbjct: 81 GVGAKQPAKRKVAQPQAKDEEVSKQSKKLSKKMRKMMEHEK 121
>MGI|MGI:1917866 [details] [associations]
symbol:Sugp1 "SURP and G patch domain containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
MGI:MGI:1917866 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701 CTD:57794
HOVERGEN:HBG079172 OMA:EKVAMEN OrthoDB:EOG4VX24Z EMBL:AF521129
EMBL:AK156508 EMBL:BC120919 EMBL:BC120920 IPI:IPI00454015
RefSeq:NP_081757.1 UniGene:Mm.17665 PDB:1UG0 PDB:1X4O PDBsum:1UG0
PDBsum:1X4O ProteinModelPortal:Q8CH02 SMR:Q8CH02 STRING:Q8CH02
PhosphoSite:Q8CH02 PaxDb:Q8CH02 PRIDE:Q8CH02
Ensembl:ENSMUST00000011450 GeneID:70616 KEGG:mmu:70616
UCSC:uc009lyn.1 GeneTree:ENSGT00410000025695 InParanoid:Q8CH02
EvolutionaryTrace:Q8CH02 NextBio:331984 Bgee:Q8CH02 CleanEx:MM_SF4
Genevestigator:Q8CH02 GermOnline:ENSMUSG00000011306 Uniprot:Q8CH02
Length = 643
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG + QGI+ P++ G G G ++ P E
Sbjct: 557 KLTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATT-----IDGAGFGIDRPAELS 611
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 612 KEDDEYEAFRKRM 624
>RGD|1310496 [details] [associations]
symbol:Sugp1 "SURP and G patch domain containing 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
RGD:1310496 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701 CTD:57794
HOVERGEN:HBG079172 OrthoDB:EOG4VX24Z GeneTree:ENSGT00410000025695
EMBL:BC079341 IPI:IPI00206072 RefSeq:NP_001011920.1
RefSeq:XP_003751619.1 UniGene:Rn.67035 ProteinModelPortal:Q68FU8
SMR:Q68FU8 STRING:Q68FU8 PhosphoSite:Q68FU8 PRIDE:Q68FU8
Ensembl:ENSRNOT00000027826 GeneID:290666 KEGG:rno:290666
UCSC:RGD:1310496 InParanoid:Q68FU8 NextBio:631453
ArrayExpress:Q68FU8 Genevestigator:Q68FU8
GermOnline:ENSRNOG00000020510 Uniprot:Q68FU8
Length = 644
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G+QML +MGW G GLG + QGI+ P++ G G G ++ P E
Sbjct: 558 KLTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATT-----IDGAGFGIDRPAELS 612
Query: 76 RKSKK-QAFISRM 87
++ + +AF RM
Sbjct: 613 KEDDEYEAFRKRM 625
>UNIPROTKB|E5RJG9 [details] [associations]
symbol:PINX1 "PIN2/TERF1-interacting telomerase inhibitor
1" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174
SMART:SM00443 GO:GO:0003676 HGNC:HGNC:30046 EMBL:AC105001
EMBL:AC011008 IPI:IPI01009127 Ensembl:ENST00000523559
ArrayExpress:E5RJG9 Bgee:E5RJG9 Uniprot:E5RJG9
Length = 134
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 19 DESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLND 70
D+S G +ML++MGW G GLGA+EQG I +V+ + + + G+G ++N+
Sbjct: 25 DDSKFGQRMLEKMGWSKGKGLGAQEQGATDHI---KVQVKNN-HLGLGATINN 73
>ZFIN|ZDB-GENE-070615-33 [details] [associations]
symbol:sugp1 "SURP and G patch domain containing 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-070615-33
GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
GeneTree:ENSGT00410000025695 EMBL:FP074868 IPI:IPI00931429
Ensembl:ENSDART00000114286 Bgee:E7FGI4 Uniprot:E7FGI4
Length = 604
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
KL N G QML +MGW G GLG+ QGI+AP++ G G G ++ P E
Sbjct: 518 KLTVENIGFQMLMKMGWKEGDGLGSDGQGIKAPVNRGSTA-----VDGAGFGVDRPAELS 572
Query: 76 RKSKK-QAFISRM 87
+ + AF RM
Sbjct: 573 KSDDEYDAFRKRM 585
>UNIPROTKB|F8WBT5 [details] [associations]
symbol:PINX1 "PIN2/TERF1-interacting telomerase inhibitor
1" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174
SMART:SM00443 GO:GO:0003676 IPI:IPI00385561 HGNC:HGNC:30046
EMBL:AC105001 EMBL:AC011008 Ensembl:ENST00000426190
ArrayExpress:F8WBT5 Bgee:F8WBT5 Uniprot:F8WBT5
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 19 DESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLND 70
D+S G +ML++MGW G GLGA+EQG I +V+ + + + G+G ++N+
Sbjct: 23 DDSKFGQRMLEKMGWSKGKGLGAQEQGATDHI---KVQVKNN-HLGLGATINN 71
>ZFIN|ZDB-GENE-060929-836 [details] [associations]
symbol:aggf1 "angiogenic factor with G patch and
FHA domains 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0001525 "angiogenesis" evidence=IMP]
[GO:0051897 "positive regulation of protein kinase B signaling
cascade" evidence=IMP] [GO:0060841 "venous blood vessel
development" evidence=IMP] [GO:0001570 "vasculogenesis"
evidence=IMP] InterPro:IPR000253 InterPro:IPR000467
InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006
PROSITE:PS50174 SMART:SM00240 SMART:SM00443
ZFIN:ZDB-GENE-060929-836 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 CTD:55109 eggNOG:NOG270400 HOGENOM:HOG000033843
HOVERGEN:HBG050465 OrthoDB:EOG4S1T6Q EMBL:BC124193 IPI:IPI00801129
RefSeq:NP_001073451.1 UniGene:Dr.75501 ProteinModelPortal:Q08CK9
PRIDE:Q08CK9 GeneID:559905 KEGG:dre:559905 InParanoid:Q08CK9
NextBio:20883193 ArrayExpress:Q08CK9 Bgee:Q08CK9 Uniprot:Q08CK9
Length = 774
Score = 99 (39.9 bits), Expect = 0.00046, P = 0.00046
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDL-YKGVGVSLNDPYEN 74
++ + NKG QML++MGW G GLG GI+ PI + + L G +S+ D +
Sbjct: 673 EIGDENKGRQMLEKMGWKRGEGLGKDGAGIKDPIQLHMRKAQSGLGSSGSAMSVEDA--S 730
Query: 75 FRKSKKQAFISRMKER 90
KSK Q R +ER
Sbjct: 731 LTKSKTQRNWERARER 746
>UNIPROTKB|E1C5N4 [details] [associations]
symbol:E1C5N4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 GeneTree:ENSGT00410000025695
EMBL:AADN02071781 IPI:IPI00579410 Ensembl:ENSGALT00000004817
Uniprot:E1C5N4
Length = 1084
Score = 100 (40.3 bits), Expect = 0.00053, P = 0.00053
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 16 EKLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN--DPY 72
+KL N G QML++MGW G GLG + +GI P+ G E L GV N D +
Sbjct: 1009 KKLTNRNVGFQMLQKMGWQEGHGLGTRGKGIREPVKVGATSAGEGL--GVAGEENKEDAF 1066
Query: 73 ENFRKSKKQAF 83
+ FR+ Q +
Sbjct: 1067 DVFRQRMIQMY 1077
>UNIPROTKB|E5RGR1 [details] [associations]
symbol:PINX1 "PIN2/TERF1-interacting telomerase inhibitor
1" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0005739 GO:GO:0005730 GO:GO:0003676 HGNC:HGNC:30046
EMBL:AC105001 EMBL:AC011008 IPI:IPI00973972 Ensembl:ENST00000524114
ArrayExpress:E5RGR1 Bgee:E5RGR1 Uniprot:E5RGR1
Length = 198
Score = 89 (36.4 bits), Expect = 0.00063, P = 0.00063
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 19 DESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLND 70
D+S G +ML++MGW G GLGA+EQG I +V+ + + + G+G ++N+
Sbjct: 35 DDSKFGQRMLEKMGWSKGKGLGAQEQGATDHI---KVQVKNN-HLGLGATINN 83
>UNIPROTKB|F1MAK0 [details] [associations]
symbol:F1MAK0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000253 InterPro:IPR000467
InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585 PROSITE:PS50006
PROSITE:PS50174 SMART:SM00240 SMART:SM00443 GO:GO:0048471
GO:GO:0005576 GO:GO:0001938 GO:GO:0043499 GO:GO:0007155
GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00510000046476 IPI:IPI00763234
Ensembl:ENSRNOT00000051653 Uniprot:F1MAK0
Length = 706
Score = 96 (38.9 bits), Expect = 0.00085, P = 0.00085
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
++ +SNKG +ML++MGW G GLG G++ PI R L G S++D +
Sbjct: 608 EITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLGTGKPSSIDDVHFLQ 667
Query: 76 RKSKK 80
KSKK
Sbjct: 668 NKSKK 672
>UNIPROTKB|J9P453 [details] [associations]
symbol:RBM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00510000046476 EMBL:AAEX03026316
EMBL:AAEX03026318 EMBL:AAEX03026317 Ensembl:ENSCAFT00000046659
Uniprot:J9P453
Length = 768
Score = 96 (38.9 bits), Expect = 0.00095, P = 0.00095
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 18 LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN-DPYENF 75
L N G +ML+ MGW G+GLG K+QGI PI + R R G S E++
Sbjct: 694 LGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEA-QTRVRGSGLGARGSSYGVTSTESY 752
Query: 76 RKSKKQAFISRMKERQ 91
+++ + ++R E Q
Sbjct: 753 KETLHKTMVTRFNEAQ 768
>UNIPROTKB|F1RWX6 [details] [associations]
symbol:LOC100525622 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0034393 "positive regulation of smooth muscle
cell apoptotic process" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00510000046476 GO:GO:0016585 OMA:NQHSLNI
EMBL:FP710256 Ensembl:ENSSSCT00000013419 Uniprot:F1RWX6
Length = 788
Score = 96 (38.9 bits), Expect = 0.00098, P = 0.00098
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 18 LDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLN-DPYENF 75
L N G +ML+ MGW G+GLG K+QGI PI + R R G S E++
Sbjct: 714 LGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEA-QTRVRGSGLGARGSSYGVTSTESY 772
Query: 76 RKSKKQAFISRMKERQ 91
+++ + ++R E Q
Sbjct: 773 KETLHKTMVTRFNEAQ 788
>UNIPROTKB|F1NWU4 [details] [associations]
symbol:AGGF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0007155 "cell adhesion" evidence=IEA] [GO:0043499 "eukaryotic
cell surface binding" evidence=IEA] [GO:0045766 "positive
regulation of angiogenesis" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] InterPro:IPR000253
InterPro:IPR000467 InterPro:IPR008984 Pfam:PF00498 Pfam:PF01585
PROSITE:PS50006 PROSITE:PS50174 SMART:SM00240 SMART:SM00443
GO:GO:0048471 GO:GO:0005576 GO:GO:0001938 GO:GO:0043499
GO:GO:0007155 GO:GO:0045766 GO:GO:0003676 Gene3D:2.60.200.20
SUPFAM:SSF49879 OMA:NKNKKNW GeneTree:ENSGT00510000046476
EMBL:AADN02046231 EMBL:AADN02046232 EMBL:AADN02046233
EMBL:AADN02046234 IPI:IPI00823383 Ensembl:ENSGALT00000006867
Uniprot:F1NWU4
Length = 644
Score = 95 (38.5 bits), Expect = 0.00098, P = 0.00098
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 17 KLDESNKGHQMLKRMGWG-GAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENF 75
++ +SNKGH+ML++MGW G GLG G++ PI + ++ G+G S E+
Sbjct: 546 EISDSNKGHKMLEKMGWKKGEGLGKDGGGMKDPIH----LQLHKMHAGLGTSRPTSIEDI 601
Query: 76 R--KSKKQAFISRMKER 90
+ SK + + +ER
Sbjct: 602 QIVPSKNKKNWEKARER 618
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 98 98 0.00091 102 3 11 23 0.50 30
29 0.45 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 64
No. of states in DFA: 503 (54 KB)
Total size of DFA: 101 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 12.51u 0.08s 12.59t Elapsed: 00:00:19
Total cpu time: 12.52u 0.08s 12.60t Elapsed: 00:00:22
Start: Thu Aug 15 10:51:47 2013 End: Thu Aug 15 10:52:09 2013