RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12790
         (98 letters)



>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
           oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis}
           PDB: 3f4r_A* 3f4t_A*
          Length = 226

 Score = 25.2 bits (55), Expect = 4.0
 Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 3/42 (7%)

Query: 39  GAKEQGIEA-P--ISGGEVREREDLYKGVGVSLNDPYENFRK 77
              + GI A P         +    +  V        + F  
Sbjct: 163 AINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTN 204


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.9 bits (53), Expect = 5.2
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 8/36 (22%)

Query: 12 KSGVEKLDESNKGHQMLKRMGWGGA-GLGAKEQGIE 46
          K  ++KL  S      LK      A  L  K   +E
Sbjct: 19 KQALKKLQAS------LKLYADDSAPALAIKAT-ME 47


>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
          structural genomics, PSI-2, protein structur
          initiative; 2.30A {Desulfovibrio vulgaris}
          Length = 472

 Score = 24.8 bits (55), Expect = 6.1
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 51 GGEVREREDLYKGVGVSLNDPYENFRKSK 79
           GEV   E L       + DP E FR +K
Sbjct: 52 SGEVSNIESLQATPYNVVRDP-EFFRINK 79


>3b8b_A CYSQ, sulfite synthesis pathway protein;
           3'-phosphoadenosine-5'-phosphosulfate (PAPS)
           3'-phosphatase, structural genomics; HET: MSE; 1.70A
           {Bacteroides thetaiotaomicron vpi-5482}
          Length = 292

 Score = 24.1 bits (53), Expect = 8.4
 Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 27  MLKRMGWGGAGLGAKEQGIEAPISGGEVREREDLYKGVGVSLNDPYENFR--------KS 78
           + K + +   G GA +      +    V  ++ + K   + L D  ++F           
Sbjct: 141 VKKELYFAVEGTGAYKCSGIVGLEDEGVTLQQMIEKSERMPLADARDHFIAVASRSHLTP 200

Query: 79  KKQAFISRMKER 90
           + + +I+ +K++
Sbjct: 201 ETETYIADLKKK 212


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,522,470
Number of extensions: 82477
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 23
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)