BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12791
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 450 bits (1157), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/388 (57%), Positives = 284/388 (73%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G +P+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 16 FLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 74
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 75 CLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 134
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP V D++ + +V +H DI+LV+DNT
Sbjct: 135 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNT 194
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 195 FMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSP 254
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HEL K Q +G
Sbjct: 255 IDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTG 314
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+ K RD LGI
Sbjct: 315 CTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGI 374
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 375 SDTLIRLSVGLEDEEDLLEDLDQALKAA 402
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 450 bits (1157), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/388 (57%), Positives = 284/388 (73%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G +P+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 12 FLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 70
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 71 CLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 130
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP V D++ + +V +H DI+LV+DNT
Sbjct: 131 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNT 190
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 191 FMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSP 250
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HEL K Q +G
Sbjct: 251 IDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTG 310
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+ K RD LGI
Sbjct: 311 CTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGI 370
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 371 SDTLIRLSVGLEDEEDLLEDLDQALKAA 398
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/395 (48%), Positives = 260/395 (65%), Gaps = 11/395 (2%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
L + FATKA+H G D S VI PI LSTTFKQ++P P +EYSRS NP R N
Sbjct: 2 LQESDKFATKAIHAGEHVDVHGS--VIEPISLSTTFKQSSPANPIGTYEYSRSQNPNREN 59
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LER +A+LE A++GL +SSG + L G H +S DVYGGT+RYF +VA G+
Sbjct: 60 LERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119
Query: 124 EVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP---DILLVL 179
E F DL + +L + IK NTK+VWIE PTNP + V D++ ++ ++K+H D++LV+
Sbjct: 120 ETSFTNDL--LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV 177
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNTFL+ Y L +G DIV++S TKY+NGHSDVV+G TN+ L RL+FLQN++G +
Sbjct: 178 DNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAI 237
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKS 298
PSPFD WL RGLKTL R+++ + ++A+FL + V V +PGL +HPN+++
Sbjct: 238 PSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLK 297
Query: 299 QWSGT--SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356
Q GM+SF + GGAE F S +F AESLGGIESL ++PA MTH IPKE
Sbjct: 298 QHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEA 357
Query: 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391
R+A G+ D+LVR+SVG+E DL+ D+ QAL++A
Sbjct: 358 REASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/381 (46%), Positives = 255/381 (66%), Gaps = 5/381 (1%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCI 68
+ AT A+H G PD + V+PPI ++T+ Q++PG+ QGFEYSR++NPTR ERC+
Sbjct: 19 SLATLAIHGGQSPDP-STGAVMPPIYATSTYAQSSPGEH-QGFEYSRTHNPTRFAYERCV 76
Query: 69 ASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI-GLEVDF 127
A+LE ++SG+ A + V LL AG H+++ DD+YGGT+R F +V + GL+ F
Sbjct: 77 AALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSF 136
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
VDL I+ +TKMVWIE PTNP++ + D+ AI+ + ++H +L V+DNTF +
Sbjct: 137 VDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH-GLLTVVDNTFASPM 195
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-LQARLKFLQNSMGVVPSPFDCW 246
Q+ L G D+V++S TKY+NGHSD+V G V D++ L ++ FLQNS+G V PFD +
Sbjct: 196 LQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSF 255
Query: 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306
L RGLKTLP R++ H ++ +A++LE+HP ++ V++PGL SHP H LAK Q SG G+
Sbjct: 256 LALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGI 315
Query: 307 LSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNL 366
+S + GG + + F E +F AESLGG+ESL + PA MTH SIP R+ LGI+D L
Sbjct: 316 VSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDAL 375
Query: 367 VRLSVGVEGYTDLIADLDQAL 387
VRLSVG+E DL DL++AL
Sbjct: 376 VRLSVGIEDLGDLRGDLERAL 396
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 298 bits (764), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/386 (38%), Positives = 236/386 (61%), Gaps = 7/386 (1%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQG-FEYSRSNNPTRR 62
+ ++ + +T V++ ++ D + + P+ + TFKQ P G ++Y+RS NPTR
Sbjct: 81 IKEEASVSTLLVNLDNKFDPFDAMST--PLYQTATFKQ--PSAIENGPYDYTRSGNPTRD 136
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE +A L++A C++SG+ A++AVTHL+ G+ I++GDDVYGG+ R +QV P+ G
Sbjct: 137 ALESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 196
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+ V V+ K++ + I P TK+VW+E+PTNP + D++ IS + ++LV DN+
Sbjct: 197 VVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLV-DNS 255
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
++ + L G DIV++S TK++ GHSDV+ G + L + FLQNS G +P
Sbjct: 256 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAP 315
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDCWL RG+KT+ R+++ + + ++A +L SHP VK V + GLP HP H L SQ G
Sbjct: 316 FDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKG 375
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+ SF + G ++ +E+ F A S G ++SL +P M+H SIP E R+A G+
Sbjct: 376 AGSVFSF-ITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGL 434
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALR 388
T++LVR+S G+E DLI+DLD A +
Sbjct: 435 TEDLVRISAGIEDVDDLISDLDIAFK 460
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 157/392 (40%), Positives = 232/392 (59%), Gaps = 11/392 (2%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTR 61
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 GFNTQIVHAGQQPDP-STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTT 66
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + + PK
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPK 126
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q LLV+D
Sbjct: 127 FGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GALLVVD 185
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF++ Y Q+ L G DIV++S+TKY+NGH DV+ G V + + QAR L++ G
Sbjct: 186 NTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGX 245
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 MSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQ 305
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 MSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLK 365
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 AGITDGLIRLSVGLEDPEDIINDLEHAIRKAT 397
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 222/379 (58%), Gaps = 6/379 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT+A+H G PD + V PI S+TF Q+ G G+EY+R+ NPTR LE +A
Sbjct: 18 LATRAIHSGYRPDPA-TGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 70 SLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
++E+A G +SSG+ A A+ +L GDH++ DD YGGT+R +V +E V
Sbjct: 77 AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
L ++ + I+P T+++W+E PTNPL+++ D+ I+ + +LV DNTF +
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLV-DNTFASPAL 195
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q+ L G D+VL+S T Y+ GHSDVV GA VTND+ L FLQN G VP PFD +L
Sbjct: 196 QQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLT 255
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGLKTL R++ H + VA+FL HP + VL+PGLPSHP H +A Q G GM+S
Sbjct: 256 MRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVS 315
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
+ G IF AESLG +ESL + P+ MTH S L + D+LVR
Sbjct: 316 VRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQ---LEVPDDLVR 372
Query: 369 LSVGVEGYTDLIADLDQAL 387
LSVG+E DL+ DL QAL
Sbjct: 373 LSVGIEDVADLLDDLKQAL 391
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 290 bits (743), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 231/391 (59%), Gaps = 11/391 (2%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTR 61
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 GFNTQIVHAGQQPDP-STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTT 66
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + + PK
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK 126
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q LLV+D
Sbjct: 127 FGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GALLVVD 185
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF++ Y Q+ L G DIV++S+T Y+NGH DV+ G V + + QAR L++ G
Sbjct: 186 NTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGC 245
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 MSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQ 305
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 MSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLK 365
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 AGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 290 bits (743), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 231/391 (59%), Gaps = 11/391 (2%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTR 61
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 GFNTQIVHAGQQPDP-STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTT 66
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + + PK
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK 126
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q LLV+D
Sbjct: 127 FGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GALLVVD 185
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF++ Y Q+ L G DIV++S+T Y+NGH DV+ G V + + QAR L++ G
Sbjct: 186 NTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGC 245
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 MSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQ 305
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 MSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLK 365
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 AGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 290 bits (742), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 231/391 (59%), Gaps = 11/391 (2%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTR 61
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 GFNTQIVHAGQQPDP-STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTT 66
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + + PK
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK 126
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q LLV+D
Sbjct: 127 FGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GALLVVD 185
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF++ Y Q+ L G DIV++S+T Y+NGH DV+ G V + + QAR L++ G
Sbjct: 186 NTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGC 245
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 MSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQ 305
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 MSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLK 365
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 AGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 231/391 (59%), Gaps = 11/391 (2%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTR 61
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 GFNTQIVHAGQQPDP-STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTT 66
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + + PK
Sbjct: 67 DALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK 126
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q LLV+D
Sbjct: 127 FGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GALLVVD 185
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF++ Y Q+ L G DIV++S+T Y+NGH DV+ G V + + QAR L++ G
Sbjct: 186 NTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGC 245
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 MSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQ 305
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 MSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLK 365
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 AGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 287 bits (735), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 154/386 (39%), Positives = 227/386 (58%), Gaps = 11/386 (2%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRN 63
AT +H + DQ+ + IPPI ++TF + Q G+ Y+R NPT N
Sbjct: 9 ATACIHANPQKDQFGA--AIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSN 66
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE+ + + SSG+GA+ A V +L AGDH+IS + +YG T+ F K G
Sbjct: 67 LEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG 126
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
++VDF++ + K++KPNTK+V+ E P NP + + D++ + +L++ DNT
Sbjct: 127 IQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNT 186
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA-RLKFLQNSMGVVPS 241
F + + +GVD+V++S TKY+NGH+DVV G D LQ R+ +++ G V S
Sbjct: 187 FCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS 246
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D WL+TRGL TL R+K +++VA++L+SHP V+ V +PG H H++AK Q
Sbjct: 247 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR 306
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
M++F + G E + L++L + A SLGG ESL PA MTH +PKE R+A G
Sbjct: 307 MYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAG 366
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQAL 387
ITD ++RLSVG+E +LIAD Q L
Sbjct: 367 ITDGMIRLSVGIEDADELIADFKQGL 392
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 202/326 (61%), Gaps = 3/326 (0%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE A+ +SG+GA+ A V L AGDH+IS D +YG T+ F K G
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDF+D+ N+ K++KPNT++V+ E P NP + V D++ ++ DIL+++DNT
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNT 122
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVPS 241
F + L GVDIV++S TKY+NGH+DVV G + D + + + + +++ G + S
Sbjct: 123 FASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS 182
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D WL+TRG TL R+K + +VA+FL H VK V +PGLP HP HE+AK Q
Sbjct: 183 PHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK 242
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
M++F V+ G E+ + L++ + A SLGG ESL PA MTH +PKE R+A G
Sbjct: 243 MFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQAL 387
+TDNL+RLSVG E D+I DL QAL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQAL 327
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 221/383 (57%), Gaps = 4/383 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G D+ + CV+PPI LS+T+ T P+ +YSR NPTR ++R +A
Sbjct: 6 ATIAVRSGLNDDE-QYGCVVPPIHLSSTYN-FTGFNEPRAHDYSRRGNPTRDVVQRALAE 63
Query: 71 LEEAKHGLCYSSGLGAVTAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE + ++G+ A+ VT + L GD +++ D YGG+YR F +A + V FVD
Sbjct: 64 LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
+ L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+ Q
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLARE-VGAVSVVDNTFLSPALQ 182
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
L G D+VL+S T Y+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 183 NPLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 242
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLSF
Sbjct: 243 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF 302
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R+
Sbjct: 303 ELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRI 362
Query: 370 SVGVEGYTDLIADLDQALRKACK 392
S G+E DLIADL+ R A K
Sbjct: 363 STGIEDGEDLIADLENGFRAANK 385
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 205/365 (56%), Gaps = 10/365 (2%)
Query: 32 PIILSTTFKQNTPGQPP-------QGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGL 84
PI ++TF ++ Q +G YSR NPT E + S+E A + SG+
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 85 GAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPN 143
GA+++ T L GDH+I+GD +YG T F P+ G+EVD +D +E + KPN
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 144 TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSL 203
TKMV++E+P NP V D+K I AVV LV+D TF + + K L G DI L+S+
Sbjct: 145 TKMVYLESPANPTCKVSDIKGI-AVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
+KY+NGH DV+ G + A +KF + G + +P D +L RG+KTLP R++ H
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323
++VAKFLE H + V HPGL S P H++AK Q +G F + E + +E
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-SFEAAKKLME 322
Query: 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383
L + A SLG +++L + PA MTH ++P+ GIT LVR+SVG+E D+IADL
Sbjct: 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADL 382
Query: 384 DQALR 388
QAL
Sbjct: 383 KQALE 387
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 258 bits (658), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 204/365 (55%), Gaps = 10/365 (2%)
Query: 32 PIILSTTFKQNTPGQPP-------QGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGL 84
PI ++TF ++ Q +G YSR NPT E + S+E A + SG+
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 85 GAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPN 143
GA+++ T L GDH+I+GD +YG T F P+ G+EVD +D +E + KPN
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 144 TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSL 203
TKMV++E+P NP V D+K I AVV LV+D TF + + K L G DI L+S+
Sbjct: 145 TKMVYLESPANPTCKVSDIKGI-AVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
+ Y+NGH DV+ G + A +KF + G + +P D +L RG+KTLP R++ H
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323
++VAKFLE H + V HPGL S P H++AK Q +G F + E + +E
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-SFEAAKKLME 322
Query: 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383
L + A SLG +++L + PA MTH ++P+ GIT LVR+SVG+E D+IADL
Sbjct: 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADL 382
Query: 384 DQALR 388
QAL
Sbjct: 383 KQALE 387
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 258 bits (658), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 228/392 (58%), Gaps = 13/392 (3%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT--------PGQPPQGFEYSRSNNPTR 61
FAT+A+H G +P Q ++PP+ + TF T G+ F YSR +NPT
Sbjct: 10 FATRAIHHGYDP-QDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHF-YSRISNPTL 67
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE +ASLE + GL +SG+GA+T+ LL GD ++ G+ +YG T+ + +
Sbjct: 68 NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE 127
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H +V+D
Sbjct: 128 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH-GATVVVD 186
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NT+ T Y Q+ L G D+V++S TKY++GH D+ G V + + + RL+ L++ G V
Sbjct: 187 NTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 246
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P + LA+ Q
Sbjct: 247 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQ 306
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S E R
Sbjct: 307 MSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391
GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 367 YGISEGLVRLSVGLEDIDDLLADVQQALKASA 398
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 227/392 (57%), Gaps = 13/392 (3%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT--------PGQPPQGFEYSRSNNPTR 61
FAT+A+H G +P Q ++PP+ + TF T G+ F YSR +NPT
Sbjct: 10 FATRAIHHGYDP-QDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHF-YSRISNPTL 67
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE +ASLE + GL +SG+GA+T+ LL GD ++ G+ +YG T+ + +
Sbjct: 68 NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGE 127
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H +V+D
Sbjct: 128 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH-GATVVVD 186
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NT+ T Y Q+ L G D+V++S T Y++GH D+ G V + + + RL+ L++ G V
Sbjct: 187 NTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 246
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P + LA+ Q
Sbjct: 247 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQ 306
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S E R
Sbjct: 307 MSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391
GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 367 YGISEGLVRLSVGLEDIDDLLADVQQALKASA 398
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 227/392 (57%), Gaps = 13/392 (3%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT--------PGQPPQGFEYSRSNNPTR 61
FAT+A+H G +P Q ++PP+ + TF T G+ F YSR +NPT
Sbjct: 10 FATRAIHHGYDP-QDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHF-YSRISNPTL 67
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE +ASLE + GL +SG+GA+T+ LL GD ++ G+ +YG T+ + +
Sbjct: 68 NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE 127
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H +V+D
Sbjct: 128 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH-GATVVVD 186
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NT+ T Y Q+ L G D+V++S T Y++GH D+ G V + + + RL+ L++ G V
Sbjct: 187 NTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 246
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P + LA+ Q
Sbjct: 247 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQ 306
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S E R
Sbjct: 307 MSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391
GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 367 YGISEGLVRLSVGLEDIDDLLADVQQALKASA 398
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 198/341 (58%), Gaps = 8/341 (2%)
Query: 51 FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGG 109
FEY R NPT LE I++LE A+ L +SG+ A T + L+ AG HI++ D Y
Sbjct: 106 FEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRK 165
Query: 110 TYRYFAQVAPKIGLE---VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166
T + + PK+G+ +D D+ +E + K N + + E+PTNP + D++ +S
Sbjct: 166 TRIFIETILPKMGITATVIDPADVGALELALNQKKVN--LFFTESPTNPFLRCVDIELVS 223
Query: 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ 226
+ + L+ +D TF T QK+L G D+VL+S TK++ GH+DV+ G ++ L
Sbjct: 224 KLCHEK-GALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGC-ISGPLKLV 281
Query: 227 ARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPG 286
+ ++ L + +G +P +L+ RG+KTL R+++ ++ +A+ LE+HP V+ V +PG
Sbjct: 282 SEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPG 341
Query: 287 LPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAE 346
L SHP H +AK Q +G G +SF V+G T F+++L I A S GG ES+ D PA
Sbjct: 342 LQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAI 401
Query: 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
M++ + + R GI DNLVR S GVE + DL AD+ QAL
Sbjct: 402 MSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 194/342 (56%), Gaps = 6/342 (1%)
Query: 51 FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGG 109
+ YSR NPT E + +E A +SG+ AV T++ LL AGD +++ ++G
Sbjct: 73 YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGS 132
Query: 110 TYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
+ +++ P+ G++ FVD + + + T+ V+ E P+NP+ ++ D+ A++ +
Sbjct: 133 CFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELA 192
Query: 170 KQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229
+VLDN F T Q+ P GVD+V+YS T +++G V+ GA + + + + +
Sbjct: 193 -HAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLGGAILGDREYIDGPV 251
Query: 230 KFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPS 289
+ L G S F+ W++ +GL+TL R++ + +A+FL HP V+ V +P LPS
Sbjct: 252 QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPS 311
Query: 290 HPNHELAKSQWSGTSGMLSFYVN--GGAEETRIF--LESLLIFRCAESLGGIESLADLPA 345
HP ++LAK Q SG +++F ++ + R F L+ + + + +LG +SL PA
Sbjct: 312 HPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPA 371
Query: 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
TH+++ E R A+G+ D +VR+SVG+E DLIAD+D+AL
Sbjct: 372 TTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 209/421 (49%), Gaps = 46/421 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRR 62
F T +H G EP+ +P I +T++ +P F YSR NPT
Sbjct: 3 FETLQLHAGYEPEPTTLSRQVP-IYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVD 61
Query: 63 NLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+LE K L +SG A A+T L AGD+I+S ++YGGT+ F ++
Sbjct: 62 VLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL 121
Query: 122 GLEVDFVDLR-KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV F + E + T+ W+E+ NP + + D++A++ ++ + L++D
Sbjct: 122 GIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK-GVALIVD 180
Query: 181 NTF-LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS--------------- 224
NTF + Y + L WG +V +SLTK++ GH V+ GA V +
Sbjct: 181 NTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQP 240
Query: 225 -----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
++AR+ L++ G PF+ W+V G++TL R + H ++
Sbjct: 241 GYHGLRLTEAFGELAFIVKARVDGLRDQ-GQALGPFEAWVVLLGMETLSLRAERHVENTL 299
Query: 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG-MLSFYVNGGAEETRIFLESLL 326
+A +L P V V +PGLP HP+H+ A+ + G G +L+F + GG E + F+ L
Sbjct: 300 HLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLK 359
Query: 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386
+ ++G +LA PA TH + E + G++ +VRLSVG+E DL A+L +A
Sbjct: 360 LISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEA 419
Query: 387 L 387
L
Sbjct: 420 L 420
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 185/343 (53%), Gaps = 11/343 (3%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTY 111
Y R T +L++ + LE + + G AV ++ + GDH++ + Y +
Sbjct: 76 YGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQ 135
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ +++ K+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+
Sbjct: 136 DFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRS 195
Query: 172 H-PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230
PD ++++DNT+ K+L +G+D+ + + TKY+ GHSD ++G V N + +L+
Sbjct: 196 VVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWE-QLR 254
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
MG + ++ +RGL+TL RL++H S++VA++L HP V V HP LP
Sbjct: 255 ENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGS 314
Query: 291 PNHELAKSQWSGTSGMLSFYVNG--GAEETRIFLESLLIFRCAESLGGIES--LADLPAE 346
HE K ++G+SG+ SF + EE +L++ +F A S GG ES LA+ P
Sbjct: 315 KGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEH 374
Query: 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ E + + L+RL +G+E DLIADLD +
Sbjct: 375 IAAIRPQGE----IDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 185/343 (53%), Gaps = 11/343 (3%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTY 111
Y R T +L++ + LE + + G AV ++ + GDH++ + Y +
Sbjct: 56 YGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQ 115
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ +++ K+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+
Sbjct: 116 DFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRS 175
Query: 172 H-PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230
PD ++++DNT+ K+L +G+D+ + + TKY+ GHSD ++G V N + +L+
Sbjct: 176 VVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWE-QLR 234
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
MG + ++ +RGL+TL RL++H S++VA++L HP V V HP LP
Sbjct: 235 ENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGS 294
Query: 291 PNHELAKSQWSGTSGMLSFYVNG--GAEETRIFLESLLIFRCAESLGGIES--LADLPAE 346
HE K ++G+SG+ SF + EE +L++ +F A S GG ES LA+ P
Sbjct: 295 KGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEH 354
Query: 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ E + + L+RL +G+E DLIADLD +
Sbjct: 355 IAAIRPQGE----IDFSGTLIRLHIGLEDVDDLIADLDAGFAR 393
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 184/343 (53%), Gaps = 11/343 (3%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTY 111
Y R T +L++ + LE + + G AV ++ + GDH++ + Y +
Sbjct: 56 YGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQ 115
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ +++ K+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+
Sbjct: 116 DFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRS 175
Query: 172 H-PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230
PD ++++DNT+ K+L +G+D+ + + T Y+ GHSD ++G V N + +L+
Sbjct: 176 VVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCNARCWE-QLR 234
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
MG + ++ +RGL+TL RL++H S++VA++L HP V V HP LP
Sbjct: 235 ENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGS 294
Query: 291 PNHELAKSQWSGTSGMLSFYVNG--GAEETRIFLESLLIFRCAESLGGIES--LADLPAE 346
HE K ++G+SG+ SF + EE +L++ +F A S GG ES LA+ P
Sbjct: 295 KGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEH 354
Query: 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ E + + L+RL +G+E DLIADLD +
Sbjct: 355 IAAIRPQGE----IDFSGTLIRLHIGLEDVDDLIADLDAGFAR 393
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 186/368 (50%), Gaps = 33/368 (8%)
Query: 49 QGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG-LGAVTAVTHLLSAGDHIISGDDVY 107
+G+ Y+R +PT + LE + +LE A + +SG A+ LL GD +++ ++
Sbjct: 46 EGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLF 105
Query: 108 GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167
G T F QV +G+ V +VD + E + + + T+ V++E NP + V D++A+ A
Sbjct: 106 GQTIGLFGQVLSLMGVTVRYVD-PEPEAVREALSAKTRAVFVETVANPALLVPDLEAL-A 163
Query: 168 VVKQHPDILLVLDNTFLTA-YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ 226
+ + + LV+DNTF A + L WG +V+ SLT + +GH V+ GA ++ + L
Sbjct: 164 TLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTXWASGHGSVLGGAVLSRETELW 223
Query: 227 ARL-KFLQNSM--------------------------GVVPSPFDCWLVTRGLKTLPCRL 259
+FLQ + G+ SPF+ +L+ +GL+T+ R+
Sbjct: 224 RNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRV 283
Query: 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319
+ +A+ L+ HP VK + +PGLP P H A+ + +L+ + G E
Sbjct: 284 ARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GDLERAS 342
Query: 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379
FL ++ + + A +LG +L P TH + +E R G+T LVR+SVG+E DL
Sbjct: 343 RFLGAIRLLKAA-NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDL 401
Query: 380 IADLDQAL 387
+A ++AL
Sbjct: 402 LALFEEAL 409
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 202/409 (49%), Gaps = 37/409 (9%)
Query: 10 FATKAVHIGSEPDQWRS--QCVIPPIILSTTFKQNTPGQPPQ-------GFEYSRSNNPT 60
F T+A+H+ P R + P+ + F+ + Q G YSRS+NPT
Sbjct: 27 FTTRALHV---PKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPT 83
Query: 61 RRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP 119
+LE+ + +L A L SG+ A+ TA+ L AGD +++ D ++G T F + P
Sbjct: 84 VEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP 143
Query: 120 KIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL 179
G+EV FVD+ + TK++++E +NP + V D++A+S VV I LV+
Sbjct: 144 SFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVV-HAKGIPLVV 202
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND----DSL---------- 225
D T Y ++ GVDI + S TK+++G V G + + SL
Sbjct: 203 DTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKA 262
Query: 226 -------QARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPC 278
+AR + QN +G SP + +L + GL+T+ R++ + + E+A +L S P
Sbjct: 263 GPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQ 321
Query: 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIE 338
VK V HP LP P + +AK Q+ +L+F + R F+++L + R A ++ +
Sbjct: 322 VKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYR-FMDALKLIRRATNIHDNK 380
Query: 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
SL P + + E R L I+ ++RLSVG+E DL D+ QAL
Sbjct: 381 SLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-------IENLIKYIKPNTK 145
L+ GDH+IS +Y TY+ + +G EVD + + +E L + I+P TK
Sbjct: 101 LIEPGDHVIS---LYP-TYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTK 156
Query: 146 MVWIENPTNPLMTVFDVKAISAVVK 170
+ I N NP V D + +V+
Sbjct: 157 XICINNANNPTGAVXDRTYLEELVE 181
>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 78 LCYSSGLGAVTAVTHLLSAGDHIISGDDVYG---------GTYRYFAQVAPKIGLEVDFV 128
LC G + A+T + AGD+ + + G +F P+ E D
Sbjct: 109 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLD 168
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL--DNTFLTA 186
++R++++ TK++ + NP+NP + F K + +V+ ++ L L D +
Sbjct: 169 EIRRLKD------DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGM 222
Query: 187 YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTN 221
++ P + S+ + V++G T N
Sbjct: 223 VFKGKDP---NATFTSVADFETTVPRVILGGTAXN 254
>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262.
pdb|3FFH|B Chain B, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262
Length = 363
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 133 IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFL 184
+E + I T +VWI NP NP ++ I A + + P D+L+VLD ++
Sbjct: 145 LEGXLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYI 197
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK----IE-NLIKYIK-P 142
A HLL GD I + ++ Y ++ +EVD K IE N I+ +K P
Sbjct: 185 AENHLLKKGDKIAINEPIFT-PYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP 243
Query: 143 NTKMVWIENPTNPLMTVFDVKAISAV---VKQHPDILLVLDNTF 183
+ K + + NPTNP FD A++A+ V+++P + ++ D +
Sbjct: 244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLXIISDEVY 287
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAI----SAVVKQHPDILLVLDNTFLTAYYQKS 191
L K P+ K+ + NP+NP D +++ + V +Q PD+L++ D+ + T +
Sbjct: 237 LDKLKDPDVKIFFCVNPSNPPSVKMDQRSLDRVRAIVAEQRPDLLILTDDVYGTFADEFQ 296
Query: 192 LPWGV----DIVLYSLTKYMNGHSDVVMGATVTNDDSL 225
+ V +++YS +KY G + +G + D++
Sbjct: 297 SLFSVCPRNTLLVYSFSKYF-GATGWRLGVIAAHKDNV 333
>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
pdb|1V2E|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2E|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2F|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
pdb|1V2F|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
Length = 381
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTFL 184
+DL +E K + P T+ + + P NP VF +++AI+ + + H D+ L+ D +
Sbjct: 140 LDLSALE---KALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYD 195
Query: 185 TAYY 188
YY
Sbjct: 196 ELYY 199
>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
Length = 427
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 109 GTYRYFAQVAPKIGLEV-------DFVDLRKIENLIKYIKPNTKMVWI----ENPTNPLM 157
G R+F+ + + G E D D +E L+K P K W+ NPT +
Sbjct: 142 GYDRHFS-ITERFGFEXISVPXNEDGPDXDAVEELVK--NPQVKGXWVVPVFSNPTGFTV 198
Query: 158 TVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIV 199
T K +SA PD +V DN + P +DIV
Sbjct: 199 TEDVAKRLSAXETAAPDFRVVWDNAYAVHTLTDEFPEVIDIV 240
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-GVVPSPFDCWLVTRGLK-TLPC 257
+Y +T G +D +D++ + L++ + GV+PS FD + + RGL+ +LP
Sbjct: 109 VYGVTTGFGGSADT------RTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPL 162
Query: 258 RLKEHERG--SIEVAKFLESHPCVKGVLHPGLPSHPNH 293
E RG +I V H V+ V+ L + NH
Sbjct: 163 ---EVVRGAXTIRVNSLTRGHSAVRLVVLEALTNFLNH 197
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-GVVPSPFDCWLVTRGLK-TLPC 257
+Y +T G +D +D++ + L++ + GV+PS FD + + RGL+ +LP
Sbjct: 109 VYGVTTGFGGSADT------RTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPL 162
Query: 258 RLKEHERG--SIEVAKFLESHPCVKGVLHPGLPSHPNH 293
E RG +I V H V+ V+ L + NH
Sbjct: 163 ---EVVRGAXTIRVNSLTRGHSAVRLVVLEALTNFLNH 197
>pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|B Chain B, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|C Chain C, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|D Chain D, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
Length = 350
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 143 NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLT 185
N W+ NP NP + I ++ HPD VLD ++++
Sbjct: 129 NXDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVS 171
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 133 IENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
++ L KY+ T+ + I +P NP ++T D++ I+ V +H D++++ D + Y
Sbjct: 149 VDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYD 207
Query: 190 KSLPWGVDIV--LYSLTKYMNGHS 211
+ + + + ++ T +NG S
Sbjct: 208 DARHYSIASLDGMFERTITVNGFS 231
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 133 IENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
++ L KY+ T+ + I +P NP ++T D++ I+ V +H D++++ D + Y
Sbjct: 150 VDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYD 208
Query: 190 KSLPWGVDIV--LYSLTKYMNGHS 211
+ + + + ++ T +NG S
Sbjct: 209 DARHYSIASLDGMFERTITVNGFS 232
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBF|B Chain B, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBU|A Chain A, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|B Chain B, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|C Chain C, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|D Chain D, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1TVE|A Chain A, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
pdb|1TVE|B Chain B, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
Length = 358
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 76 HGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRY-FAQVAPKIGLEVDFVDLRKIE 134
H +GL ++ + ++ GD + + ++ GT Y F + + +V F D+ K+
Sbjct: 141 HEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVA 200
Query: 135 NLIKYIKPN 143
+ Y +P+
Sbjct: 201 KKLGYTEPD 209
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
pdb|1Q7G|B Chain B, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
Length = 359
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 76 HGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRY-FAQVAPKIGLEVDFVDLRKIE 134
H +GL ++ + ++ GD + + ++ GT Y F + + +V F D+ K+
Sbjct: 142 HEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVA 201
Query: 135 NLIKYIKPN 143
+ Y +P+
Sbjct: 202 KKLGYTEPD 210
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE------NLIKYIKPNTKMVWIE 150
GD I+ + Y Y FA++A G+++ V R E NL +I TK + +
Sbjct: 126 GDEILVLEPFYA-NYNAFAKIA---GVKLIPVTRRXEEGFAIPQNLESFINERTKGIVLS 181
Query: 151 NPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDI 198
NP NP V+ + + + + ++H + L++D + ++ + I
Sbjct: 182 NPCNPTGVVYGKDEXRYLVEIAERH-GLFLIVDEVYSEIVFRGEFASALSI 231
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 183 FLTAYYQKSLPWGV-DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230
F T Y P+G+ + +++S+ G D + V+NDD L R+K
Sbjct: 291 FSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK 339
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 32/174 (18%)
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVT---------HLLSAGDHIISGDDVYGGTYR- 112
L + I E+ K+G+ + VTA LL GD I+ V G +Y
Sbjct: 82 ELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEIL----VPGPSYPP 137
Query: 113 YFAQVAPKIGLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166
Y V G V++ + + I+++ K I TK + + NP NP ++D K +
Sbjct: 138 YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLE 197
Query: 167 AV--VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTK-----YMNGHSDV 213
+ + +I ++ D + Y+ G I SLTK MNG S V
Sbjct: 198 EILNIAGEYEIPVISDEIYDLMTYE-----GEHISPGSLTKDVPVIVMNGLSKV 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,013,401
Number of Sequences: 62578
Number of extensions: 495935
Number of successful extensions: 1458
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 49
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)