RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12791
(393 letters)
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 518 bits (1336), Expect = 0.0
Identities = 203/384 (52%), Positives = 266/384 (69%), Gaps = 10/384 (2%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT-----PGQPPQGFEYSRSNNPTRRNLE 65
AT AVH G PD+ ++ V+ PI L++T+ +T G+ G++YSRS NPTR LE
Sbjct: 1 ATLAVHAGQRPDR-QTGAVVVPIYLTSTYVFDTVEALFAGEHG-GYDYSRSGNPTRDALE 58
Query: 66 RCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124
IA+LE + L +SSG+ A+ A+ LL AGDH+++ DD+YGGTYR F +V P+ G+E
Sbjct: 59 ERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIE 118
Query: 125 VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL 184
V FVD ++ L IKPNTK V++E PTNPL+ V D++AI+ + K+H L+V+DNTF
Sbjct: 119 VTFVDPSDLDALEAAIKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKH-GALVVVDNTFA 177
Query: 185 TAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND-DSLQARLKFLQNSMGVVPSPF 243
+ Y Q+ L G DIV++S TKY+ GHSDVV G V N + L RL+FLQN+ G V SPF
Sbjct: 178 SPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPF 237
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
D WL+ RGLKTL R++ H+ ++++A+FLE HP V+ V +PGLPSHP HELAK Q SG
Sbjct: 238 DAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMSGF 297
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
GMLSF + GG E FL++L +F AESLGG+ESL PA MTH SIP E R+A GIT
Sbjct: 298 GGMLSFELKGGLEAASKFLDNLKLFSLAESLGGVESLISHPATMTHASIPPEEREAAGIT 357
Query: 364 DNLVRLSVGVEGYTDLIADLDQAL 387
D L+RLSVG+E DLIADL QAL
Sbjct: 358 DGLIRLSVGIEDVDDLIADLKQAL 381
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 497 bits (1282), Expect = e-177
Identities = 184/369 (49%), Positives = 249/369 (67%), Gaps = 9/369 (2%)
Query: 28 CVIPPIILSTTFKQNTPGQPPQ-------GFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80
V PPI ++TF +P + G+ YSR NPT LE+ +A+LE + L +
Sbjct: 2 AVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAF 61
Query: 81 SSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKY 139
SSG+ A++ V LL AGDH+++ DD+YGGTYR F ++ PK+G+EV FVD E L
Sbjct: 62 SSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAA 121
Query: 140 IKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIV 199
IKP TK+V++E+PTNP + V D++AI+ + +H LLV+DNTF T Y Q+ L G DIV
Sbjct: 122 IKPETKLVYVESPTNPTLKVVDIEAIAELAHEH-GALLVVDNTFATPYLQRPLELGADIV 180
Query: 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRL 259
++S TKY+ GHSDV+ G V + ++L RL+FL+ ++G + SPFD WL+ RGLKTLP R+
Sbjct: 181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240
Query: 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319
+ H +++VA+FLE HP V+ V +PGLPSHP HELAK Q SG G+ SF + GG E +
Sbjct: 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAK 300
Query: 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379
FL +L +F A SLGG+ESL + PA MTH +P E R A GIT LVRLSVG+E DL
Sbjct: 301 KFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDL 360
Query: 380 IADLDQALR 388
IADL+QAL+
Sbjct: 361 IADLEQALK 369
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 488 bits (1259), Expect = e-173
Identities = 190/397 (47%), Positives = 253/397 (63%), Gaps = 13/397 (3%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPP-------QGFEYSRS 56
+ T+ VH G PD + V PPI L++TF ++ G+ G++YSR+
Sbjct: 2 SKAKLSLTTRLVHAGRRPDD-LTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRT 60
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFA 115
NPTR LE +A LE + +SSG+ A+ TA+ LL AGDH++ DD+YGGTYR F
Sbjct: 61 GNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFE 120
Query: 116 QVAPKIGLEVDFVDLRKIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPD 174
++ K G+EV FVD E L IK PNTK+V++E P+NPL+ V D+ AI+ + K +
Sbjct: 121 KILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAY-G 179
Query: 175 ILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234
L+V+DNTF T Q+ L G DIV++S TKY+ GHSDV+ G +T ++ L L F Q
Sbjct: 180 ALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQR 239
Query: 235 S-MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNH 293
+ G V SPFD WL+ RGL+TL R++ H ++++A+FL HP VK V +PGLPSHP H
Sbjct: 240 ANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGH 299
Query: 294 ELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353
ELAK Q +G G+ SF + E + FL+SL +F+ AESLGG+ESL PA MTH SIP
Sbjct: 300 ELAKRQMTGYGGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIP 358
Query: 354 KETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
E R GITD LVRLSVG+E DLIADL+QAL KA
Sbjct: 359 LEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA 395
>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 450 bits (1159), Expect = e-158
Identities = 177/390 (45%), Positives = 239/390 (61%), Gaps = 6/390 (1%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPT 60
MS + FAT+A+H G EPD + V PPI S+TF Q+ G G+EY+R+ NPT
Sbjct: 4 MSDHHANQGFATRAIHAGYEPDP-ATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPT 62
Query: 61 RRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP 119
R LE +A+LE +G +SSG+ A + +L GDHI+ +D YGGT+R +V
Sbjct: 63 RTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFT 122
Query: 120 KIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL 179
+ G+E VDL ++ + I P TK++W+E PTNPL+++ D+ A++ + +V+
Sbjct: 123 RWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDA-GAKVVV 181
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNTF + Y Q+ L G D+V++S TKY+ GHSDVV GA VTND+ L FLQN G V
Sbjct: 182 DNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAV 241
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
P PFD +L RGLKTL R+ H + VA+FL HP V VL+PGLPSHP HE+A Q
Sbjct: 242 PGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQ 301
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
G GM+S + GG E R F +F AESLGG+ESL + P+ MTH S
Sbjct: 302 MRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHAST---AGSQ 358
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRK 389
L + D+LVRLSVG+E DL+ADL+QAL +
Sbjct: 359 LEVPDDLVRLSVGIEDVADLLADLEQALGQ 388
>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional.
Length = 377
Score = 438 bits (1128), Expect = e-154
Identities = 189/376 (50%), Positives = 243/376 (64%), Gaps = 4/376 (1%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASL 71
TK +H G D + V PI +T+KQ G+ QG+EYSR+ NPTR LE IA L
Sbjct: 5 TKLIHGGIIGDP-STGAVSVPIYQVSTYKQEAVGKH-QGYEYSRTGNPTRAALEELIAVL 62
Query: 72 EEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131
E G + SG+ A+TAV L S+GDH+I DDVYGGTYR +V + G+E FVD
Sbjct: 63 EGGHAGFAFGSGMAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS 122
Query: 132 KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS 191
+E + + I+PNTK +++E PTNPL+ + D+K IS + K+ +L ++DNTF+T Y+Q
Sbjct: 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK-GLLTIVDNTFMTPYWQSP 181
Query: 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
+ G DIVL+S TKY+ GHSDVV G V N L L F+QNS G + P D WL+ RG
Sbjct: 182 ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRG 241
Query: 252 LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311
LKTL R++EHE S +A+FL +HP V V +PGLPSHPNHELAK Q +G GM+SF V
Sbjct: 242 LKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301
Query: 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV 371
G E LE L F AESLG +ESL +P++MTH SIP + R LGITD L+R+SV
Sbjct: 302 -GSEETANKVLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISV 360
Query: 372 GVEGYTDLIADLDQAL 387
G+E DLI DL QAL
Sbjct: 361 GIEDGEDLIEDLAQAL 376
>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine
beta-lyase; Validated.
Length = 380
Score = 409 bits (1053), Expect = e-142
Identities = 185/382 (48%), Positives = 248/382 (64%), Gaps = 4/382 (1%)
Query: 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERC 67
TK +H G D + V PI ++T++Q+ G+P +G+EYSRS NPTR LE
Sbjct: 1 MRMQTKLIHGGISEDT-TTGAVSVPIYQTSTYRQDAIGRP-KGYEYSRSGNPTRFALEEL 58
Query: 68 IASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127
IA LE G ++SGL + AV L +GDH++ GDDVYGGT+R F +V K GL
Sbjct: 59 IADLEGGVKGFAFASGLAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTI 118
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
+D + + K IKPNTK +++E P+NPL+ + D+ ++V K H +L ++DNTF T Y
Sbjct: 119 IDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDH-GLLTIVDNTFATPY 177
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
YQ L G DIV++S TKY+ GHSDVV G TN+++L + F QN++G V P D WL
Sbjct: 178 YQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWL 237
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
+ RG+KTL R++ H++ ++ VA+FLE HP V+ V +PGLP+HPNHELAK Q G SGML
Sbjct: 238 LQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGML 297
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
SF + E F+ESL +F ESLGG+ESL +PA MTH IPKE R+A GI D LV
Sbjct: 298 SFTLK-NDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLV 356
Query: 368 RLSVGVEGYTDLIADLDQALRK 389
RLSVG+E DL+ DL+QA K
Sbjct: 357 RLSVGIEHEQDLLEDLEQAFAK 378
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 363 bits (933), Expect = e-124
Identities = 163/385 (42%), Positives = 234/385 (60%), Gaps = 10/385 (2%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQ---NTPGQPPQGFEYSRSNNPTRR 62
+ T +H + D+ ++ V PI ++TF Q +T G+ ++YSRS NPTR
Sbjct: 3 MSYSIDTLLLHNQYKHDK-QTGAVNVPIYHASTFHQFDFDTFGK----YDYSRSGNPTRE 57
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE G ++SG+ A++ LLS GDH++ +DVYGGTYR +V + G
Sbjct: 58 ALEDIIAELEGGTKGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFG 117
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+E FVD+ +E + + IKPNTK+ ++E P+NPL+ V D++ + + K L +DNT
Sbjct: 118 IEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAI-GCLTFVDNT 176
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FLT QK L G D+VL+S TK++ GHSDV+ G V D+ L +L FLQNS G V
Sbjct: 177 FLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGV 236
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DCWLV RGLKTL RL+ + ++A +L+ HP V+ V +PGL +H ++ +SQ +
Sbjct: 237 QDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATS 296
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+LSF + E R F+ + + A SLG +ES+ PA+M+H ++PKE RD GI
Sbjct: 297 AGAVLSFTL-QSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGI 355
Query: 363 TDNLVRLSVGVEGYTDLIADLDQAL 387
TD L+RLSVG+E DLIAD +QAL
Sbjct: 356 TDGLLRLSVGLENVDDLIADFEQAL 380
>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase.
This family consists of O-succinylhomoserine
(thiol)-lyase, one of three different enzymes designated
cystathionine gamma-synthase and involved in methionine
biosynthesis. In all three cases, sulfur is added by
transsulfuration from Cys to yield cystathionine rather
than by a sulfhydrylation step that uses H2S directly
and bypasses cystathionine [Amino acid biosynthesis,
Aspartate family].
Length = 382
Score = 352 bits (904), Expect = e-120
Identities = 162/381 (42%), Positives = 224/381 (58%), Gaps = 4/381 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G D + CV+PPI LSTT+ +P ++YSRS NPTR L++ +A
Sbjct: 5 ATIAVRSGLNSDT-QYGCVVPPIYLSTTYNFTGFNEPRA-YDYSRSGNPTRDLLQQALAE 62
Query: 71 LEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE + ++G+ A+ V T LL D +++ D YGGTYR +A K V FVD
Sbjct: 63 LEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD 122
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
+ L + K+V IE P+NPL+ V D+ I + K ++V+DNTFL+ Q
Sbjct: 123 QGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV-GAVVVVDNTFLSPALQ 181
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
L G D+VL+S TKY+NGHSDV+ GA + D + L + N++GV FD +L
Sbjct: 182 NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTL 241
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RGL+TL R++ +R + + ++L++ P VK + +PGLP HP HE+A Q G MLSF
Sbjct: 242 RGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSF 301
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
+ GG + R FL L +F AESLGG+ESL PA MTH ++ E R GI+D L+RL
Sbjct: 302 ELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRL 361
Query: 370 SVGVEGYTDLIADLDQALRKA 390
SVG+E DLIADL+Q LR A
Sbjct: 362 SVGLEDADDLIADLEQGLRAA 382
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 343 bits (882), Expect = e-116
Identities = 160/381 (41%), Positives = 221/381 (58%), Gaps = 24/381 (6%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASL 71
TK IG+ D+ R+ V PP+ ST ++ G+ GF+YSR+ NPTR LE+ IA L
Sbjct: 7 TKLAQIGNRSDE-RTGTVNPPVYFSTAYRHEGIGES-TGFDYSRTGNPTRGVLEQAIADL 64
Query: 72 EEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131
E G SSG+ A+ V L +GD +I D+YGGTYR F + K + +V+
Sbjct: 65 EGGDQGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124
Query: 132 KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS 191
++ + + I PNTK ++IE PTNPLM D+ AI+ + K+H +LL++DNTF T Q+
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKH-GLLLIVDNTFYTPVLQRP 183
Query: 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
L G DIV++S TKY+ GH+DV+ G V L RL + QN+ G V SPFD WL+ RG
Sbjct: 184 LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRG 243
Query: 252 LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311
+KTL R+++HE + +A FL P V VL+P G GMLSF +
Sbjct: 244 MKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP----------------GRGGMLSFRL 287
Query: 312 NGGAEETRI--FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
+E + FL+SL + AESLGG+ES PA TH IP+E R A G+ + L+R
Sbjct: 288 ---QDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRF 344
Query: 370 SVGVEGYTDLIADLDQALRKA 390
SVG+E DLIADL QA ++
Sbjct: 345 SVGIENVEDLIADLKQAFKQV 365
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 342 bits (878), Expect = e-115
Identities = 157/393 (39%), Positives = 236/393 (60%), Gaps = 11/393 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
FATKA+H G D+ + + PI ++TF ++ Q G+ YSR NPT
Sbjct: 9 FATKAIHGGHIGDK-QFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTST 67
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
+E +A LE + + +SG+GA++ ++ L AGDH+++ D +YG T+ +
Sbjct: 68 EVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY 127
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV-KQHPDILLVLD 180
G+EV FVD +E + +K NTK+V++E P NP + V D+KAIS + + + + L+ +D
Sbjct: 128 GVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVD 187
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF T Y Q+ L G D+V++S TKY+NGH DV+ G V ++ + Q +L +++ G V
Sbjct: 188 NTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSV 247
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
PF+ +L+ RG+KTL R+++H + +++VAKFLESHP V+ V +PGL S +ELAK Q
Sbjct: 248 IGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQ 307
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S M+SF + GG EE ++ + ++ + A SLG E+L PA MTH E R
Sbjct: 308 MSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKE 367
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
GI+D LVRLSVG+E D+IADL QAL K
Sbjct: 368 AGISDGLVRLSVGLEDVDDIIADLKQALDLIVK 400
>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys.
Length = 378
Score = 340 bits (873), Expect = e-115
Identities = 150/380 (39%), Positives = 223/380 (58%), Gaps = 5/380 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
+T V+ ++ D + + PI + TFKQ + ++Y+RS NPTR LE +A
Sbjct: 2 STLLVNTDNKNDPYDAS--SMPIYQTATFKQPLAIENGP-YDYTRSGNPTRTALESLLAK 58
Query: 71 LEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130
L++A +SSG+ A+ +T LL+ GD II+GDD+YGGT R QV P+ G+ V VD
Sbjct: 59 LDKADRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT 118
Query: 131 RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK 190
++ + + P TK+V +E+PTNPL + D++ IS + + L+V+DNT ++
Sbjct: 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQ-NALVVVDNTMMSPLLCN 177
Query: 191 SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250
L G DIV +S TK++ GHSDV+ G + + ++ FLQNS G +PFDCWL+ R
Sbjct: 178 PLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLR 237
Query: 251 GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310
G+KTL R+++ + + +A FL +HP VK V + GLPSHP L SQ G +LSF
Sbjct: 238 GIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSF- 296
Query: 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLS 370
G ++ +E+ +F S G + SL +P M+H SIP E R+ G+ ++LVRLS
Sbjct: 297 ETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLS 356
Query: 371 VGVEGYTDLIADLDQALRKA 390
VG+E DLI+DLD A A
Sbjct: 357 VGIEDVDDLISDLDIAFVTA 376
>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model
describes a methionine gamma-lyase subset of a family of
PLP-dependent trans-sulfuration enzymes. The member from
the parasite Trichomonas vaginalis is described as
catalyzing alpha gamma- and alpha-beta eliminations and
gamma-replacement reactions on methionine, cysteine, and
some derivatives. Likewise, the enzyme from Pseudomonas
degrades cysteine as well as methionine [Energy
metabolism, Amino acids and amines].
Length = 391
Score = 333 bits (856), Expect = e-112
Identities = 160/391 (40%), Positives = 231/391 (59%), Gaps = 13/391 (3%)
Query: 7 DTAFATKAVHIGSEP-DQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNN 58
FAT+A+H G P DQ+ + + PPI ++TF ++ Q G+ YSR N
Sbjct: 1 RMTFATRAIHAGYPPKDQFGA--LTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGN 58
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQV 117
PT NLE IA LE + + SSG+GA+ A + +L AGDH+IS + +YG T+
Sbjct: 59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHA 118
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
K G++VDF+++ E + +IK NTK+V+ E P NP M + D++ + + +
Sbjct: 119 LTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQ-GVKV 177
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSM 236
++DNTF T + GVD+V++S TKY+ GH DVV G + LQ R+ +++
Sbjct: 178 IVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT 237
Query: 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
G V SPFD WL+ RGLKTL R+K H +++VA++L+SHP V+ V +PG HP H++A
Sbjct: 238 GSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIA 297
Query: 297 KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356
Q GM++F + GG + L +L + R A SLG E+L PA MTH +PKE
Sbjct: 298 AKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEE 357
Query: 357 RDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
R+A GITD ++RLSVG+E DLIADL QAL
Sbjct: 358 REAAGITDGMIRLSVGLEDADDLIADLKQAL 388
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 321 bits (825), Expect = e-107
Identities = 154/428 (35%), Positives = 226/428 (52%), Gaps = 48/428 (11%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTP--------GQPPQGFEYSRSN 57
+ F T AVH G E ++ V PI +T++ + + P G Y+R
Sbjct: 4 ANWGFETLAVHAGQEDPTTGARAV--PIYQTTSYVFDDTDHAAALFGLKEP-GNIYTRIM 60
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQ 116
NPT LE IA+LE L +SG A+T L AGD+I+S +YGGTY F+
Sbjct: 61 NPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSH 120
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
++G+EV FVD EN I NTK V+ E NP + V D++AI+ + +H +
Sbjct: 121 TLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRH-GVP 179
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------- 219
L++DNTF T Y + + G DIV++S TKY+ GH + G V
Sbjct: 180 LIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFT 239
Query: 220 TNDDSLQ----------------ARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
T D S AR++ L++ +G SPF+ +L+ +GL+TL R++ H
Sbjct: 240 TPDPSYHGLVYTETFGNAAFIIKARVQLLRD-LGATLSPFNAFLLLQGLETLSLRMERHC 298
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA-KSQWSGTSGMLSFYVNGGAEETRIFL 322
+++VA+FLE+HP V V +PGL SHP H LA K G +L+F V GG E + F+
Sbjct: 299 ENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFI 358
Query: 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382
++L +F ++G SL PA TH+ + +E + A G+T +L+RLSVG+E D+IAD
Sbjct: 359 DALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIEDIDDIIAD 418
Query: 383 LDQALRKA 390
L+QAL A
Sbjct: 419 LEQALEAA 426
>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
Length = 386
Score = 319 bits (820), Expect = e-107
Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 16/392 (4%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNN 58
+ T +H G ++ + + PP+ ++TF T Q + YSR N
Sbjct: 2 KKKHMETALIHHGYTSEEHKGS-LTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGN 60
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQV 117
PT + E +A LE + L + SG+ A++A L AGDHII + +YG TY + +
Sbjct: 61 PTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVL 120
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
K + F D+ ++ I+PNTK++++E P NP M + D+K + V K++ +L+
Sbjct: 121 EEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRN-GLLV 179
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237
++DNTF + Y Q+ L G D V++S TKY+ GH DVV G T+ +L +++ ++ +G
Sbjct: 180 IVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIG 239
Query: 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAK 297
+ +PFD WL+ RGLKTL R+ H + ++ FL++H V+GV +P ELA
Sbjct: 240 GIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVW------YPEGELAS 293
Query: 298 SQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
Q G++SF + GG EET+ F+ L A SLG E+L PA MTH +IP E R
Sbjct: 294 RQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELR 353
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+GI DNL+RLSVG+E + D+++DL+QAL+K
Sbjct: 354 QEMGIYDNLIRLSVGLESWEDIVSDLEQALKK 385
>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
Length = 403
Score = 320 bits (821), Expect = e-107
Identities = 157/403 (38%), Positives = 222/403 (55%), Gaps = 14/403 (3%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT--------PGQPPQGFE 52
M +T F+T+A+H G +P ++PP+ L+ TF T G+ G
Sbjct: 1 MRDSHNNTGFSTRAIHHGYDPLD-HGGALVPPVYLTATFAFPTAEYGAECFAGEEE-GHF 58
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTY 111
YSR +NPT LE+ +ASLE + + +SG+GA+TA LL GD +I +YG T+
Sbjct: 59 YSRISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTF 118
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ + G+ V VDL L I T+MV+ E P NP M + D+ A++ +
Sbjct: 119 AFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHG 178
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLK 230
+V+DNT+ T Y Q+ L G D+V++S TKY+ GH D+ G V RL+
Sbjct: 179 A-GAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLE 237
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
L++ G V SPFD +L+ RGLKTL R+ H + VA++L HP V+ V +PGLPS
Sbjct: 238 GLKDMTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSF 297
Query: 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350
H LA+ Q + GM++F + GG R F+ +L +F A SLG ESLA PA MTH
Sbjct: 298 AQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHS 357
Query: 351 SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACKV 393
+ E R GI++ LVRLSVG+E D++ADL QAL AC V
Sbjct: 358 TYTPEERAEHGISEGLVRLSVGLEDVADILADLAQAL-DACAV 399
>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 314 bits (806), Expect = e-105
Identities = 154/384 (40%), Positives = 221/384 (57%), Gaps = 4/384 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G E D + V+PPI LST + G+ P+ ++Y+RS NP R LE+ ++
Sbjct: 7 ATIAVRTGIESDS-QYHAVVPPIYLSTNYGFPAFGEVPK-YDYTRSGNPNRGLLEQTLSE 64
Query: 71 LEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE K + + G A+ V+ LL D I++ D YGGTYR F A K +V FVD
Sbjct: 65 LESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVD 124
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
L + K++ +E P+NPL+ V D+ + K L+ +DNTFLT Q
Sbjct: 125 QSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA-VGALVAVDNTFLTPVLQ 183
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
K L G D V++S TKY+NGHSDV+ G +T L + N +G +PFD ++
Sbjct: 184 KPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTL 243
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RG++TL R++ HE + ++ +L++ V + HP LP HP HE+AK Q SG MLSF
Sbjct: 244 RGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSF 303
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
G E+ ++F+++L +F AESLGG+ESL PA MTH+++ +E G++ L+RL
Sbjct: 304 EFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRL 363
Query: 370 SVGVEGYTDLIADLDQALRKACKV 393
SVG+E DLIADLDQA KA +
Sbjct: 364 SVGLEDAQDLIADLDQAFAKAAEA 387
>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase.
Length = 464
Score = 313 bits (803), Expect = e-103
Identities = 146/359 (40%), Positives = 221/359 (61%), Gaps = 5/359 (1%)
Query: 31 PPIILSTTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA 89
P+ + TFKQ P G ++Y+RS NPTR LE +A L++A C++SG+ A++A
Sbjct: 106 TPLYQTATFKQ--PSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA 163
Query: 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWI 149
VTHL+ G+ I++GDDVYGG+ R +QV P+ G+ V V+ ++ + I P TK+VW+
Sbjct: 164 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL 223
Query: 150 ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNG 209
E+PTNP + D++ I+ + ++LV DN+ ++ + L G DIV++S TK++ G
Sbjct: 224 ESPTNPRQQISDIRKIAEMAHAQGALVLV-DNSIMSPVLSRPLELGADIVMHSATKFIAG 282
Query: 210 HSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
HSDV+ G + L + FLQNS G +PFDCWL RG+KT+ R+++ + + ++
Sbjct: 283 HSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKI 342
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFR 329
A +L SHP VK V + GLP HP H L SQ G + SF + G ++ +E+ F
Sbjct: 343 AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALSKHLVETTKYFS 401
Query: 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
A S G ++SL +P M+H SIP E R+A G+T++LVR+S G+E DLI+DLD A R
Sbjct: 402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFR 460
>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional.
Length = 405
Score = 304 bits (781), Expect = e-101
Identities = 163/382 (42%), Positives = 222/382 (58%), Gaps = 6/382 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G + D V PPI+LS+ F + G Q ++Y+RS NPTR L +A
Sbjct: 14 ATAAVRAGIDRDTAYG-AVTPPIVLSSNFSFDGFGNKRQ-YDYTRSGNPTRDLLGEALAE 71
Query: 71 LEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE G+ ++G+GA+ V + LL GD ++ D YGG++R F +A K + D
Sbjct: 72 LEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITAD 131
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKA-ISAVVKQHPDILLVLDNTFLTAYY 188
L +L + + K+V IE P+NPL+ + D++ I A K L V+DNTFL+
Sbjct: 132 LTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV--GALTVVDNTFLSPAL 189
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
QK L +G D+VL+S TKY+NGHSDVV GA V D L +L + N++G+ SPFD +L
Sbjct: 190 QKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLT 249
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGL+TL RL+ H+ + +A L+ H V V +PGL SHP H LA Q G MLS
Sbjct: 250 LRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLS 309
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F + GG R F++ L F AESLGG+ESL PA MTH ++ E R A GI+D L+R
Sbjct: 310 FELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLR 369
Query: 369 LSVGVEGYTDLIADLDQALRKA 390
LSVG+E DL+ DL L +A
Sbjct: 370 LSVGIESAEDLLIDLRAGLARA 391
>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.
Length = 386
Score = 304 bits (779), Expect = e-101
Identities = 151/383 (39%), Positives = 221/383 (57%), Gaps = 4/383 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G D+ + CV+PPI LS+T+ +P + +YSR NPTR ++R +A
Sbjct: 6 ATIAVRSGLNDDE-QYGCVVPPIHLSSTYNFTGFNEP-RAHDYSRRGNPTRDVVQRALAE 63
Query: 71 LEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE + ++G+ A+ V T L GD +++ D YGG+YR F +A + V FVD
Sbjct: 64 LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
+ L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+ Q
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLARE-AGAVSVVDNTFLSPALQ 182
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
L G D+VL+S TKY+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 183 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 242
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLSF
Sbjct: 243 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF 302
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R+
Sbjct: 303 ELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRI 362
Query: 370 SVGVEGYTDLIADLDQALRKACK 392
S G+E DLIADL+ R A K
Sbjct: 363 STGIEDGEDLIADLENGFRAANK 385
>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional.
Length = 385
Score = 302 bits (776), Expect = e-100
Identities = 156/389 (40%), Positives = 215/389 (55%), Gaps = 20/389 (5%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-PQGFE--YSRSNNPTRRNLERC 67
T AV D + S + PPI L+ F+Q P +GF+ YSR NPT R LE
Sbjct: 4 GTDAVRGYRGSDPYGS--LQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEA 61
Query: 68 IASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVD 126
+A LE L ++SG+ A++ + LL AGD ++ + YG T R + K G
Sbjct: 62 LAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLR-LLKSLEKFG---- 116
Query: 127 FVDLRKI----ENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
V + E++I+ IK TK+V+IE TNP + V DV ++ K+ +LV+DN
Sbjct: 117 -VKVVLAYPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKEL-GAILVVDN 174
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241
TF T + L G D V++SLTKY+ GH+DVV G V L + +G +
Sbjct: 175 TFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQ 234
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
PF+ +LV RGLKTL R + R ++ +A+FL HP V V +PGLPS P H +AK +
Sbjct: 235 PFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFG 294
Query: 302 GT--SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
G++SF V GG + FL SL + + + SLGG+ESLA P + IP+E R A
Sbjct: 295 KDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKA 354
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALR 388
LGIT++LVRLSVG+E DLI DLDQAL
Sbjct: 355 LGITEDLVRLSVGLEDVEDLIEDLDQALG 383
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities [Amino acid biosynthesis, Aspartate family,
Amino acid biosynthesis, Serine family].
Length = 418
Score = 298 bits (764), Expect = 4e-98
Identities = 154/420 (36%), Positives = 227/420 (54%), Gaps = 46/420 (10%)
Query: 10 FATKAVHIGSEPD-QWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTR 61
F T +H G EPD S+ V PI +T++ ++ F YSR NPT
Sbjct: 2 FETLQLHAGQEPDPTTGSRAV--PIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTT 59
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ IA+LE L +SG A+T A+ +L AGD+I+S +YGGTY F +
Sbjct: 60 DVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR 119
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
+G+EV FVD E K I NTK V+ E NP + V D++AI+ V H + L++D
Sbjct: 120 LGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAH-GVPLIVD 178
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------TNDDS 224
NTF T Y + + G DIV++S TKY+ GH + G V T D S
Sbjct: 179 NTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS 238
Query: 225 ----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268
++AR++ L++ +G SPF+ +L+ +GL+TL R++ H +++
Sbjct: 239 YHGLVFTETFGNPAFIVKARVQLLRD-LGAALSPFNAFLLLQGLETLSLRMERHVENALK 297
Query: 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS-GTSGMLSFYVNGGAEETRIFLESLLI 327
VA+FLE+HP V V +PGL SHP+H LAK G +LSF + GG E + F+++L +
Sbjct: 298 VAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKL 357
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
++G +SL PA TH+ + +E + G+T L+RLSVG+E D+IADL+QAL
Sbjct: 358 ASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENIDDIIADLEQAL 417
>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed.
Length = 364
Score = 292 bits (748), Expect = 1e-96
Identities = 155/386 (40%), Positives = 221/386 (57%), Gaps = 26/386 (6%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
+ +D T G + D+ + ++ P+ STT++ GQ GF+Y+R+ NPTR
Sbjct: 1 MSKDLHINTILAQAGIKSDE-ATGALVTPLHFSTTYQHPEFGQS-TGFDYTRTKNPTRAK 58
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LE +A++E A + L SSG+ A+ + G +++ D+YGG++R+F Q K G
Sbjct: 59 LEETLAAIESADYALATSSGMSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQ-QEKEG- 116
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
F E LI I+ +T +V+IE PTNPLM FD++ ++ + ++V DNTF
Sbjct: 117 RFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIV-DNTF 175
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243
+ YQ+ + G DIVL+S TKY++GH+DV+ G VTND L +L + N+ G V SPF
Sbjct: 176 YSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPF 235
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
D +L+ RGLKTL R++ + EV FL+ P VK VL+ G
Sbjct: 236 DSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK---------------- 279
Query: 304 SGMLSFYVNGGAEETRI--FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
GM+SF V A+ETRI L SL +F AESLGG+ESL P TH IP E R + G
Sbjct: 280 GGMISFKV---ADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYG 336
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQAL 387
+TD+L+RLS+G+E DLIADL QAL
Sbjct: 337 LTDDLLRLSIGIEDARDLIADLKQAL 362
>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional.
Length = 398
Score = 291 bits (747), Expect = 7e-96
Identities = 131/390 (33%), Positives = 213/390 (54%), Gaps = 13/390 (3%)
Query: 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQN--------TPGQPPQGFEYSRSNN 58
+ TKAV G E + P++LS + + G+ P G YSR+ N
Sbjct: 6 NAGVGTKAVWAG-EKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKP-GHIYSRNTN 63
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQV 117
PT + E + LE A+ +S+G+ A++ + L GD ++S D YGGT + F +
Sbjct: 64 PTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEF 123
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
P++G++V + E + I ++++E PTNP + + D++ ++A K+ L+
Sbjct: 124 LPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKV-GALV 182
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237
V+DNTF T Q L G D+V++S TK+++GH+D +G V L ++ + G
Sbjct: 183 VVDNTFATPINQNPLALGADLVIHSATKFLSGHADA-LGGVVCGSKELMEQVYHYREING 241
Query: 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAK 297
P +L+ RG+KTL R+++ + ++ +AK+L++HP V+ V +PGL +HPNHE+AK
Sbjct: 242 ATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAK 301
Query: 298 SQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
+Q G G+LSF + GG + + L L A +LG +E++ +H E R
Sbjct: 302 AQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEER 361
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQAL 387
ALGI + LVR+SVG+E DLIADL+QA
Sbjct: 362 AALGIPEGLVRISVGIEDTEDLIADLEQAF 391
>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated.
Length = 384
Score = 286 bits (734), Expect = 5e-94
Identities = 146/391 (37%), Positives = 220/391 (56%), Gaps = 26/391 (6%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTF----------KQNTPGQPPQGFEYSRSNNP 59
F T+AV G D R V PI ++TF +T G P + Y+R NP
Sbjct: 9 FNTRAVQSGELRDP-RFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMP---YIYTRWGNP 64
Query: 60 TRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVA 118
T + E A LE A+H L +SSG+GA+T A+ L+ G I+S D+YG T+ +F +V
Sbjct: 65 TVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVL 124
Query: 119 PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
+G+ VD++D ++ +L + N +++ E+ TNP + V D+K +S+ ++ ++
Sbjct: 125 KTLGIHVDYIDTDRLNSL-DFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEN---DVI 180
Query: 179 LDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238
+D TF + Y Q L G D+V++S TKY++GHSDVVMG TN+ S+ L + ++G
Sbjct: 181 VDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGS 240
Query: 239 VPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298
P P +L RGLKTL R+++H + +E+A+FL + V +P E+ K
Sbjct: 241 NPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDT------EIGKK 294
Query: 299 QWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358
G GMLSF + E+ F+ +L I A SLGG+ESL LP E +H S+ E R+
Sbjct: 295 VLRGFGGMLSFELR-SMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERE 353
Query: 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
LGI+DNLVR S+G+E DLI D++ AL K
Sbjct: 354 RLGISDNLVRFSIGIEDIDDLIKDIENALSK 384
>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
Length = 390
Score = 283 bits (726), Expect = 9e-93
Identities = 133/392 (33%), Positives = 214/392 (54%), Gaps = 12/392 (3%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPP-------QGFEYSRSN 57
F T AV G + + L+++F + + G YSR
Sbjct: 2 DDSLGFDTLAVRAGQLRSPFGEHS--EALFLTSSFVFESAAEAAARFAGEEPGNIYSRFT 59
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQ 116
NPT + +A+LE A+ + +SG+ A+ AV LL AGDH++S ++G T F +
Sbjct: 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEK 119
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
+ + G+E FVDL ++ ++PNTK+ ++E P+NPL + D+ A++ + L
Sbjct: 120 IFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAA-GAL 178
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236
LV+DN F T Q+ L G D+V++S TKY++G V+ GA V + + ++ FL+ +
Sbjct: 179 LVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR-TA 237
Query: 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
G SPF+ W+ +GL+TL R++ H ++ +A++LE+HP V+ V +PGLPSHP HELA
Sbjct: 238 GPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELA 297
Query: 297 KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356
K Q G ++SF V GG E +++ + +LG ++ PA TH + E
Sbjct: 298 KRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEA 357
Query: 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
R A GIT+ L+R++VG+E D+ ADL + L
Sbjct: 358 RAAAGITEGLIRVAVGLEDVADIKADLARGLA 389
>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis [Amino
acid biosynthesis, Aspartate family].
Length = 381
Score = 271 bits (695), Expect = 3e-88
Identities = 123/339 (36%), Positives = 200/339 (58%), Gaps = 3/339 (0%)
Query: 50 GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYG 108
GF YSR NPT E +A LE A+ + +SG+ A+ A+ LL AGDH+++ ++G
Sbjct: 45 GFVYSRYGNPTVSVFEERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFG 104
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168
+ +++ P+ G++ FVD + +KPNTK V++E P+NPL + D+ A++ +
Sbjct: 105 SCFVVCSEILPRFGVQTVFVDGTDLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAEL 164
Query: 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR 228
+V+DN F T Q+ L G D+V+YS TK+++G V+ GA + +++ +
Sbjct: 165 A-HAAGAKVVVDNVFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEP 223
Query: 229 LKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLP 288
++ L G SPF+ W++ +GL+TL R++ ++ +A++L HP V+ V +PGLP
Sbjct: 224 VQKLLRHTGPAMSPFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLP 283
Query: 289 SHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMT 348
SHP HELAK Q SG +++F ++ + L+++ + + +LG +S PA T
Sbjct: 284 SHPQHELAKRQMSGGGTVVTFDLDCRQAAFK-VLDAMRLVDISNNLGDAKSTITHPATTT 342
Query: 349 HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
H+ + E R A GI D LVRLSVG+E DLIAD+D+AL
Sbjct: 343 HRRMGPEERAAAGIGDGLVRLSVGLEDVDDLIADIDRAL 381
>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional.
Length = 376
Score = 264 bits (675), Expect = 2e-85
Identities = 138/359 (38%), Positives = 209/359 (58%), Gaps = 7/359 (1%)
Query: 35 LSTTFKQNTPGQPPQG--FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVT 91
++T Q T P+G + YSR NPT L + I LE A+ G+ +SSG+GA+ T
Sbjct: 19 ITTPIYQTTAYHYPEGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTAL 78
Query: 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK-PNTKMVWIE 150
LL G+ ++ D++G +YR+F G+ VD +N+I+ K +V++E
Sbjct: 79 ALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD-ASNPGSDNIIEKAKSKRYDVVFVE 137
Query: 151 NPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGH 210
N TNPL+ V D+ +S V K++ IL+V D TF T QK L G DIV++S +K++ GH
Sbjct: 138 NITNPLLRVVDITELSKVCKENGSILIV-DATFSTPINQKPLELGADIVVHSASKFLAGH 196
Query: 211 SDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270
+DV+ G L + ++ ++G P +L RG+KTL R+ R + ++A
Sbjct: 197 NDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIA 255
Query: 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRC 330
+FLE HP V V +PGL SH ++E+A+ G G+LSF VNGG E ++SL +
Sbjct: 256 EFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIP 315
Query: 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
A++LGG+ S+ PA M+H+++ E R +GITD+L+RLSVG+E DLI DLD+AL
Sbjct: 316 AQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALST 374
>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional.
Length = 389
Score = 262 bits (671), Expect = 1e-84
Identities = 128/341 (37%), Positives = 203/341 (59%), Gaps = 13/341 (3%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTY 111
YSR +NPT R E +A LE A+ ++SG+ A+++ V + GD I++ VY +
Sbjct: 57 YSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAF 116
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
R F + ++G+EVD+VD R E + K + P K++++E+PT+ + + DV A++A+ K+
Sbjct: 117 RLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKR 175
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231
H ++ ++DN++ + +Q+ + GVD+V++S +KY+ GHSD V G V AR+
Sbjct: 176 H-GVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAG-VVAGSKEHIARINA 233
Query: 232 LQNS-MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
+G SPF+ WL+ RGL+TLP R+K HE ++E+A+ L++HP V+ V HP L +H
Sbjct: 234 EAYPYLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANH 293
Query: 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350
P + SGTSG+ SF G + R F ++L +FR S GG ESL +PAE+ +
Sbjct: 294 P-----PAGLSGTSGLFSFIFREGI-DVRAFADALKLFRLGVSWGGHESLV-VPAEVVLQ 346
Query: 351 SIPKETR-DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+ G++ VRL VG+EG L ADL+QAL A
Sbjct: 347 QKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA 387
>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 431
Score = 257 bits (657), Expect = 5e-82
Identities = 150/425 (35%), Positives = 225/425 (52%), Gaps = 47/425 (11%)
Query: 12 TKAVHIGSEPDQWR-SQCVIPPIILSTTF-------KQNTPGQPPQGFEYSRSNNPTRRN 63
T A+H G E D S+ V PI +T++ N G Y+R NPT
Sbjct: 11 TLAIHAGQEIDPTTGSRAV--PIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDV 68
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
E+ IA+LE L SSG A+T ++ ++ SAGD I+S +YGGTY FA PK+G
Sbjct: 69 FEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG 128
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+ V FVD EN I TK ++ E NP V D++A++A+ +H I L++DNT
Sbjct: 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEH-GIPLIVDNT 187
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV-----------------TNDDS- 224
F + Y + + G DIV++S TK++ GH + G V D S
Sbjct: 188 FASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSY 247
Query: 225 ---------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
+AR++ L++ +G SPF+ +L+ +GL+TL R++ H ++ V
Sbjct: 248 HGLVYTDAVGEAAYITKARVQLLRD-LGAALSPFNSFLLLQGLETLHLRMERHSENALAV 306
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIF 328
AKFLE H V+ V +PGLPSHP++ELAK G +L+F + GG E + ++S+ +F
Sbjct: 307 AKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLF 366
Query: 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
++G +SL PA TH+ + +E + A G+T LVRLSVG E D++ DL QA+R
Sbjct: 367 SHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEAIDDILDDLRQAIR 426
Query: 389 KACKV 393
++ V
Sbjct: 427 QSQTV 431
>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated.
Length = 427
Score = 249 bits (637), Expect = 5e-79
Identities = 134/393 (34%), Positives = 197/393 (50%), Gaps = 32/393 (8%)
Query: 29 VIPPIILSTTFKQNT-----------------PGQPPQGFEYSRSNNPTRRNLERCIASL 71
V PP+ L++TF + P G YSR N+P +E +A
Sbjct: 36 VKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY 95
Query: 72 EEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE-VDFVD 129
E A+ +SSG+ A+ T + + GD I+ +YGGT A+ G+ V F D
Sbjct: 96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD 155
Query: 130 LRKIENLIKYI-----KPNTKMVWIENPTNPLMTVFDVKAISAVV-----KQHPDILLVL 179
+ K ++ IE P NP ++ DV A+ V +Q ++
Sbjct: 156 GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIAC 215
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNT L +QK L G D+ +YSLTKY+ GHSD+V GA V +L +++ L++++G
Sbjct: 216 DNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGA-VLGRKALIRQVRALRSAIGTQ 274
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGV-LHPGL-PSHPNHELAK 297
P CW++ R L+TL R++ R + VA+FL HP V+ + P L P + K
Sbjct: 275 LDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK 334
Query: 298 SQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
Q +G SF + GG FL +L IF+ A SLGG ESLA PA MTH +P + R
Sbjct: 335 RQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVR 394
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+ +G+ ++ +RLS+G+E DLIADL QAL A
Sbjct: 395 ERIGVLESTIRLSIGIEHPDDLIADLAQALDAA 427
>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed.
Length = 398
Score = 245 bits (626), Expect = 9e-78
Identities = 128/354 (36%), Positives = 202/354 (57%), Gaps = 9/354 (2%)
Query: 39 FKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAG 97
FK PG F YSR +NPT E+ + +LE A+ +SG+ AVT A+ + AG
Sbjct: 50 FKGEDPG-----FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAG 104
Query: 98 DHIISGDDVYGGTYRYFAQ-VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPL 156
DH+++ ++G + RY + + P+ G+E VD ++N K ++PNTK+ ++E+PTNP
Sbjct: 105 DHVVAARALFG-SCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPT 163
Query: 157 MTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMG 216
+ V D+ A++ + Q LV+DN F T +QK L G IV+YS TK+++G + G
Sbjct: 164 LEVIDIAAVAKIANQA-GAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGG 222
Query: 217 ATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESH 276
+++ ++ L+ G SPF+ W + +GL+TLP R+++ + +A FL H
Sbjct: 223 VVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGH 282
Query: 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGG 336
P V V++PG HP ++ Q +G S +++F + GG E FL +L I R + +LG
Sbjct: 283 PKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGD 342
Query: 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+SL PA THK++ E R LGI++ +RLS G+E DLI DL AL+K
Sbjct: 343 AKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKV 396
>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 436
Score = 241 bits (618), Expect = 4e-76
Identities = 146/424 (34%), Positives = 216/424 (50%), Gaps = 46/424 (10%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTT---FKQNTPGQPPQGFE-----YSRSNNPT 60
+F TK +H G PD + +P I TT F G Y+R NPT
Sbjct: 13 SFETKQIHAGQTPDPATNARALP--IYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPT 70
Query: 61 RRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAP 119
+ +E+ IA+LE L +SG A T A+ +L AGDHI+S +YGGTY F P
Sbjct: 71 QDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLP 130
Query: 120 KIGLEVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
K+G+EV FV D ++ ++PNTK + E +NP + V D+ ++ V + + L+
Sbjct: 131 KLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEA-GVPLI 189
Query: 179 LDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------TND 222
+DNT T Y + L G DIV++S TKY+ GH + G V T D
Sbjct: 190 VDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPD 249
Query: 223 DS---------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
S L+AR++ L++ +G SPF+ +L+ +GL+TL R++ H +
Sbjct: 250 PSYHGVVFAELGPPAYALKARVQLLRD-LGSAISPFNAFLIAQGLETLSLRIERHVANAQ 308
Query: 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLL 326
VA+FLE+ V V + GLPS P +E AK GT +LSF + GG E + F+ +L
Sbjct: 309 RVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALT 368
Query: 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386
+ ++G + SL PA TH + E + A G+T LVRL+VG+EG D++ADL+
Sbjct: 369 LHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIEGIDDILADLEAG 428
Query: 387 LRKA 390
A
Sbjct: 429 FAAA 432
>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 433
Score = 240 bits (615), Expect = 1e-75
Identities = 137/431 (31%), Positives = 205/431 (47%), Gaps = 45/431 (10%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSN 57
F T A+H G+ PD +P I L+T+F F YSR +
Sbjct: 4 MSPPGFDTLALHAGAAPDPATGARAVP-IHLTTSFVFRDSDHAAALFNLERAGHVYSRIS 62
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQ 116
NPT LE +A+LE + +SG A+ A+ L+ AG HI++ +YGG++
Sbjct: 63 NPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHY 122
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
+ G+E FV I+ I+PNT++++ E NP + V D+ ++A+ + L
Sbjct: 123 TLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPL 182
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVT---------------- 220
LV D+TF T Y + G D+V +S TK++ GH + G V
Sbjct: 183 LV-DSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELT 241
Query: 221 -----------NDDS------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
++S L+AR + L++ G SP + W + +G++TLP R++ H
Sbjct: 242 EPYAGFHGMVFAEESTVAAFLLRARREGLRD-FGACLSPMNAWQLLQGIETLPLRMERHV 300
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFL 322
+ +V FL SHP V V HP L SHP+H LAK G + SF + GG R F+
Sbjct: 301 ANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFI 360
Query: 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382
ESL +F ++G SL PA TH + A GI + +RLS+G+E DLI D
Sbjct: 361 ESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLEDADDLIDD 420
Query: 383 LDQALRKACKV 393
L +AL+ A K
Sbjct: 421 LKRALKAAEKA 431
>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional.
Length = 394
Score = 238 bits (608), Expect = 4e-75
Identities = 122/335 (36%), Positives = 180/335 (53%), Gaps = 16/335 (4%)
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQV 117
PT L + +A +E +H L SGL A++ V L+ AGD ++ D+ YG + +
Sbjct: 65 PTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWL 124
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
A G+ V F D + I+PNT+++W+E P + M V DV AI+A + ++
Sbjct: 125 ARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARAR-GVVT 183
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237
+DNT+ K GVDI + +LTKY +G SDV+MGAT+T D L A+LK + +G
Sbjct: 184 AIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLG 243
Query: 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAK 297
+ S DC LV RGL +L RL H+R ++EVA++L++ P + VLHP LP P H
Sbjct: 244 IGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWM 303
Query: 298 SQWSGTSGMLSFYVNGGAEETRI--FLESLLIFRCAESLGGIESLA---DLPAEMTHKSI 352
++G G+ S + ++ F+E+L +F S GG SLA D+ + T K
Sbjct: 304 RDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAK-- 361
Query: 353 PKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
LVRL +G+E DLIADL+QAL
Sbjct: 362 -------WPHRGTLVRLYIGLEDEADLIADLEQAL 389
>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase;
Provisional.
Length = 403
Score = 237 bits (607), Expect = 9e-75
Identities = 121/350 (34%), Positives = 196/350 (56%), Gaps = 20/350 (5%)
Query: 51 FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGG 109
F YSR NPT E + +E A+ +SG+ AV TA+ LL AGD +++ ++G
Sbjct: 62 FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGS 121
Query: 110 TYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS--- 166
+ ++ P+ G+E FVD + + + T+ V+ E P+NP+ ++ D+ A+S
Sbjct: 122 CFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELA 181
Query: 167 ----AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222
A V VLDN F T Q+ LP G D+V+YS TK+++G V+ GA + +
Sbjct: 182 HAAGAKV--------VLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDR 233
Query: 223 DSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGV 282
+ + ++ L G S F+ W++ +GL+TL R++ ++ +A+FLE HP V+ V
Sbjct: 234 EYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWV 293
Query: 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR----IFLESLLIFRCAESLGGIE 338
+P LPSHP ++LAK Q SG +++F ++ + + L+ L + + +LG +
Sbjct: 294 RYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAK 353
Query: 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
SL PA TH+++ E R A+G+ D +VRLSVG+E DLIADLD+AL
Sbjct: 354 SLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRALG 403
>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 425
Score = 233 bits (595), Expect = 8e-73
Identities = 141/423 (33%), Positives = 218/423 (51%), Gaps = 48/423 (11%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRRNL 64
T A+H G PD ++ V PI +T++ + F+ Y+R NPT L
Sbjct: 5 TLAIHAGYSPDP-TTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVL 63
Query: 65 ERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
E+ +A+LE L +SG+ A+T A+ + AGD+I+S +YGGTY A P+IG+
Sbjct: 64 EQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI 123
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
E F I L I TK V+ E+ NP + D++A++ +H + L++DNT
Sbjct: 124 ETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRH-GVPLIVDNTV 182
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV------------------TNDDSL 225
T + G DIV++SLTKY+ GH + G V T D S
Sbjct: 183 ATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSY 242
Query: 226 ----------------QARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
+ R+ L+N MG SPF+ +L+ +GL+TL R++ H +++V
Sbjct: 243 HGVTYTEAFGPAAFIGRCRVVPLRN-MGAALSPFNAFLILQGLETLALRMERHTENALKV 301
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT-SGMLSFYVNGGAEETRIFLESL-LI 327
A++L+ HP V V + GLP HP HELA+ G + +LSF + GG F+++L L+
Sbjct: 302 ARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLV 361
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
R ++G +SLA PA TH+ + E + G++ ++VRLS+G+E D+IADL QAL
Sbjct: 362 VRLV-NIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGIEHIDDIIADLAQAL 420
Query: 388 RKA 390
+
Sbjct: 421 DAS 423
>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys [Amino acid biosynthesis,
Aspartate family].
Length = 377
Score = 229 bits (585), Expect = 7e-72
Identities = 123/385 (31%), Positives = 194/385 (50%), Gaps = 14/385 (3%)
Query: 12 TKAVHIGSEP-DQWRSQCVIPPIILSTTF---KQNTPGQPPQGFEYSRSNNPTRRNLERC 67
T+ +H G +P S V PP+ ++T + Y R T L+
Sbjct: 1 TRLIHSGRQPRFSQGS--VNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDA 58
Query: 68 IASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVD 126
+ LE Y SGL AVT ++ + AGDH++ D Y T + V ++G+++
Sbjct: 59 MCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDIT 118
Query: 127 FVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA 186
+ D E++ I+PNTK++++E P++ + D+ AI+ + P I++++DNT+
Sbjct: 119 YYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARN-PGIVIMIDNTWAAG 177
Query: 187 YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
K L GVDI + + TKY+ GHSD+++G V N + +L+ MG + D +
Sbjct: 178 LLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTW-DQLREHSYLMGQMVDADDAY 236
Query: 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306
RGL+TL RLK+H+ S+ +AK+L P V VLHP LPS P HE K +SG+SG+
Sbjct: 237 TTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGL 296
Query: 307 LSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDN 365
SF + ++ FL+ L +F S GG ESLA L + P R+ +
Sbjct: 297 FSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLA-LCNQPELGHRPNIKRN---LEGP 352
Query: 366 LVRLSVGVEGYTDLIADLDQALRKA 390
L+R+ +G+E DL ADL
Sbjct: 353 LIRVHIGLENVDDLKADLKAGFEAI 377
>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional.
Length = 395
Score = 228 bits (583), Expect = 2e-71
Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTF---KQNTPGQPPQGFEYSRSNNPTRRNLERCI 68
T+ H G++P + V PP++ ++T T Q + Y PT L + I
Sbjct: 15 TRLAHDGNDPGDYHG-FVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAI 73
Query: 69 ASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127
+LE + + SGL AVT LS GDH + D VY T + + ++G+EV++
Sbjct: 74 DALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEY 133
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
D + K ++PNTK+V E P + + D+ AI+ +H ++++DNT+ T
Sbjct: 134 YDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH-GAIVMMDNTWATPL 192
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
Y + L +GVDI +++ TKY +GHSD+++G TV+ ++ +L ++G+ P D +
Sbjct: 193 YFRPLDFGVDISIHAATKYPSGHSDILLG-TVSANEKCWPQLLEAHGTLGLCAGPDDTYQ 251
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
+ RGL+T+ RL+ H + ++E+A++LE P V VLHP LPS P HE+ K +SG SG+
Sbjct: 252 ILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIF 311
Query: 308 SFYVNGGAE----ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
SF + G E + FL++L IF S GG ESLA L ++ +++ K
Sbjct: 312 SFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLA-LHVKLGDRTVAKAPYAG---- 366
Query: 364 DNLVRLSVGVEGYTDLIADLDQALRKACKV 393
++RL +G+E DL ADL++ A V
Sbjct: 367 -PVIRLQIGLEDVPDLKADLERGFAAASAV 395
>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated.
Length = 366
Score = 226 bits (578), Expect = 6e-71
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 22/382 (5%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIA 69
T++VH G P+ + V+P + + + + P G Y R++NPT R LE +
Sbjct: 5 GTRSVHAGG-PEAVPGEPVLPGPVFAAPY--HLSPGEPTGPDTYGRASNPTWRALEAALG 61
Query: 70 SLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
LE A L + SG+ A+TAV LL GD ++ D Y + +G+ V
Sbjct: 62 ELEGA-EALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREA 120
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
+ + +V E P+NP + V D+ A++A LLV+DNT T
Sbjct: 121 ---PTAGMAEAALAGADLVLAETPSNPGLDVCDLAALAAAAHAA-GALLVVDNTTATPLG 176
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q+ L G D+V+ S TK + GHSD+++G D L A ++ + G +P PF+ WL
Sbjct: 177 QRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLA 236
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
R L TL R ++ VA+ L HP V+GV +PGLP P HE+A Q G++S
Sbjct: 237 HRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVS 296
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F + A F+ + + A S GG+ + AD A DA + + VR
Sbjct: 297 FEL-ADAAAAERFVAASRLVVAATSFGGVHTSADRRARWG---------DA--VPEGFVR 344
Query: 369 LSVGVEGYTDLIADLDQALRKA 390
LS G+E DL+ADL++AL
Sbjct: 345 LSCGIEDTDDLVADLERALDAL 366
>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional.
Length = 397
Score = 222 bits (568), Expect = 4e-69
Identities = 124/369 (33%), Positives = 187/369 (50%), Gaps = 41/369 (11%)
Query: 50 GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYG 108
GF Y+R PT LE I +E +C+++G+ A+ AV LL AGDH++S ++G
Sbjct: 38 GFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFG 97
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168
T F + +G+EV VD ++N+ I+PNT+MV++E NP V D+ I A+
Sbjct: 98 NTNSLFGTLR-GLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGAL 156
Query: 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTN----DDS 224
++ +L V+DNT + + + G +V+ SL+KY+ GH + + GA VT+ D S
Sbjct: 157 CRER-GLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGA-VTDTGLFDWS 214
Query: 225 -------------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERG 265
Q R K L++ MG S + G +TL R+
Sbjct: 215 AYPNIFPAYRKGDPQQWGLTQIRKKGLRD-MGATLSSEAAHRIAIGAETLALRVDRSCSN 273
Query: 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325
++ +A+FLE+HP V V +PGL SHP H A + G+LSF + G + FL L
Sbjct: 274 ALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG-IDCFDFLNRL 332
Query: 326 LIFRCAESLGGIESLADLPA------EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379
+ A LG +L +P EM E R ++GI D+L+R+SVG+E DL
Sbjct: 333 KLVIKATHLGDTRTLV-IPVAPTIYYEMG-----AERRASMGIADSLIRVSVGIEDEADL 386
Query: 380 IADLDQALR 388
IAD +QAL
Sbjct: 387 IADFEQALD 395
>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 427
Score = 221 bits (564), Expect = 4e-68
Identities = 138/423 (32%), Positives = 206/423 (48%), Gaps = 45/423 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRR 62
FAT AVH G++PD + PI +T+F N F Y+R NPT
Sbjct: 8 FATLAVHAGAQPDP-TTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNA 66
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE +A+LE L +SG A V H LL GD I+ +YGG+ F
Sbjct: 67 VLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSF 126
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G +V + D + + I P TK ++IE+ NP TV D+ AI+ V + + L++DN
Sbjct: 127 GWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRA-GLPLIVDN 185
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV---TNDDSLQARLKFLQN---- 234
T + Y + + G DIV++SLTK++ GH + + G V T D S + L
Sbjct: 186 TLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245
Query: 235 -------------------------SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
+G SPF+ +L+ G++TLP R++ H ++ V
Sbjct: 246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV 305
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWS--GTSGMLSFYVNGGAEETRIFLESLLI 327
A++L+ HP V V + GLP P H LA+ ++S G + +F + GG E + SL +
Sbjct: 306 AEWLKGHPKVSWVNYAGLPDDPYHALAQ-KYSPKGAGAVFTFGLKGGYEAGVKLVSSLKL 364
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
F ++G SL PA TH+ + E + A G ++VRLS+G+E D+IADL+QAL
Sbjct: 365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIEDVDDIIADLEQAL 424
Query: 388 RKA 390
KA
Sbjct: 425 AKA 427
>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 437
Score = 212 bits (541), Expect = 9e-65
Identities = 136/423 (32%), Positives = 202/423 (47%), Gaps = 49/423 (11%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRR 62
F T+++H G D S +P I +T++ ++ Q F YSR NPT
Sbjct: 14 FETRSIHAGQSVDSDTSARNLP-IYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVE 72
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE IASLE H + ++SG A T A+ +L AGDHI++ +YGGT F ++
Sbjct: 73 ALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRL 132
Query: 122 GLEVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV FV + E+ ++PNTK + E NP V D+ A++ V ++ + L++D
Sbjct: 133 GIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRN-QVPLIVD 191
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGA---------TVTNDD-------- 223
NT TA + L G D+V+ SLTK+ G+ + G TV D
Sbjct: 192 NTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFV 251
Query: 224 -------------------SLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHER 264
L+AR L+++ G SPF+ W+ +GL TL RL+ H
Sbjct: 252 TPDPAYHGLKYADLGAPAFGLKARAGLLRDT-GATLSPFNAWVTAQGLDTLSLRLERHNE 310
Query: 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELA-KSQWSGTSGMLSFYVNGGAEETRIFLE 323
+I+VA+FL +H V V GL P + K T +LSF + GG +E F++
Sbjct: 311 NAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFID 370
Query: 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383
+L + ++G + SL PA TH + GIT VRLSVG+E D+IADL
Sbjct: 371 ALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGIEDIDDIIADL 430
Query: 384 DQA 386
+
Sbjct: 431 EGG 433
>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional.
Length = 394
Score = 198 bits (506), Expect = 6e-60
Identities = 125/393 (31%), Positives = 196/393 (49%), Gaps = 29/393 (7%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE--------YSRSNNPTRR 62
ATK V G + +W + PP+ ++T +T + + Y R PT
Sbjct: 6 ATKIVSAGRD-KKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHF 64
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
+ I LE Y SG A++ A+ L AGDH++ D Y T ++
Sbjct: 65 AFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGF 124
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+E + D E + + I+PNTK++++E+P + M V DV +S + +H DI+++LDN
Sbjct: 125 GIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEH-DIVVMLDN 183
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND---DSLQARLKFLQNS--M 236
T+ + + GVDI + + TKY+ GHSDV++G N+ D L+ ++S M
Sbjct: 184 TWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLR------EHSYLM 237
Query: 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
G SP D +L RGL+TL RL +HE+ +++VA +L + P V V HP + P HE
Sbjct: 238 GQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFF 297
Query: 297 KSQWSGTSGMLSFYVN-GGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK- 354
K +SG++G+ SF + G + +E + F+ S GG ESL + I K
Sbjct: 298 KRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLI-----LGVFGINKL 352
Query: 355 ETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
T + L+RL +G+E DLIADL+
Sbjct: 353 RTATNWDFSKPLIRLHIGLEDVDDLIADLEAGF 385
>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional.
Length = 395
Score = 198 bits (505), Expect = 1e-59
Identities = 120/360 (33%), Positives = 187/360 (51%), Gaps = 19/360 (5%)
Query: 40 KQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGD 98
K T + Y R T +L+ + LE Y G AV A+ + GD
Sbjct: 43 KHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGD 102
Query: 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158
H++ Y T + +++ K+G+ + D ++ K I+PNTK+V++E+P + M
Sbjct: 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITME 162
Query: 159 VFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGA 217
V DV AI A V+ +PD ++++DNT+ K+L +G+DI + + TKY+ GHSD ++G
Sbjct: 163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT 222
Query: 218 TVTNDDSLQARL--KFLQNS--MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFL 273
V N AR + +NS MG + ++ +RGL+TL RL++HE S++VA++L
Sbjct: 223 AVAN-----ARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWL 277
Query: 274 ESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--GAEETRIFLESLLIFRCA 331
HP V V HP LP HE K ++G+SG+ SF + E+ +L++ +F A
Sbjct: 278 AEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMA 337
Query: 332 ESLGGIESL--ADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
S GG ESL A+ P E+ P D T L+RL +G+E DLIADL +
Sbjct: 338 YSWGGFESLILANQPEEIAAIR-PAGEVD---FTGTLIRLHIGLEDVDDLIADLAAGFAR 393
>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 432
Score = 186 bits (472), Expect = 1e-54
Identities = 120/398 (30%), Positives = 205/398 (51%), Gaps = 44/398 (11%)
Query: 32 PIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGL 84
P+ STT+K +T +G+ Y+R NPT E+ +A LE + +SG
Sbjct: 27 PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86
Query: 85 GAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-KIENLIKYIKP 142
A+ AV ++ S+GDH++ VYGGT+ F K+G++V F + + ++
Sbjct: 87 AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146
Query: 143 NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYS 202
TK+V+ E+ NP M V + K S K+ ++ ++DNT T Y ++ G +I+++S
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKEL-EVPFIVDNTLATPYLCQAFEHGANIIVHS 205
Query: 203 LTKYMNGHSDVVMGATV-------TN---------DDS----------------LQARLK 230
TKY++GH+ + G + TN D S ++AR++
Sbjct: 206 TTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ 265
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
L++ G SPF+ ++ GL+TL R++ H ++ VAK+L H ++ V +PGL S+
Sbjct: 266 LLRD-YGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSN 324
Query: 291 PNHELAKSQWS-GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTH 349
N+ LA+ G SG+L+F + GG E + F+ ++ + + + PA TH
Sbjct: 325 ENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTH 384
Query: 350 KSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
+ + E + G+T +L+RLSVG+E +D+IADL+ AL
Sbjct: 385 RQLSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAAL 422
>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase.
Length = 418
Score = 160 bits (407), Expect = 3e-45
Identities = 103/345 (29%), Positives = 181/345 (52%), Gaps = 17/345 (4%)
Query: 47 PPQGFE-YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGD 104
P + F YSR NPT NL R +A+LE + C +SG+ A+++V L S+G H+++ +
Sbjct: 63 PDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASN 122
Query: 105 DVYGGTYRYFAQVAPKI-GLEVDFVDLRKIENLIKYIKPN-TKMVWIENPTNPLMTVFDV 162
+YGGT+ A P+ + FVD+ +E + K + P TK+++ E+ +NP +TV D+
Sbjct: 123 TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADI 182
Query: 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222
++ + + + +V+DNTF G D+V++S++K+++G +D++ GA
Sbjct: 183 PELARIAHEK-GVTVVVDNTF-APMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 240
Query: 223 DSLQARLKFLQNS---MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCV 279
+ + + + + +G +P + ++ L L R+KEH R ++E AK ++
Sbjct: 241 ELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGL- 299
Query: 280 KGVLHPGLPSHPNHELAKSQWS---GTSGMLSFYVNGGAEETRI--FLESLLIFR-CAES 333
V++PGL HP H L KS + G G+L ++ R+ +L++ F A S
Sbjct: 300 -KVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVS 358
Query: 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378
LG E+L T + E + A GI+ LVR+SVG G +
Sbjct: 359 LGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLE 403
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 57.0 bits (138), Expect = 1e-09
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 63 NLERCIASLEE--AKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVA- 118
LE +A L + + SG GA A LL GD +I + +G Y A++A
Sbjct: 4 ELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAG 63
Query: 119 ------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172
P +D+ +E L KPN ++ I T + +K I + K++
Sbjct: 64 AKPVPVPVDDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPLKEIRKIAKEY 121
Query: 173 PDILLVLDNTFLTAYYQKSLPW----GVDIVLYSLTKYMNG 209
ILL++D G D+V +SL K + G
Sbjct: 122 -GILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG 161
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 57.7 bits (140), Expect = 3e-09
Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 33/225 (14%)
Query: 64 LERCIASLEEAKHGLCYSS-----GLGAVTAVTHLLSA----GDHIISGDDVYGGTYRYF 114
L IA + G+ GA A++ LL A GD ++ D Y G Y
Sbjct: 41 LREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPG-YEAA 99
Query: 115 AQVAPKIGLEVDFVDLRK-------IENLIKYIKPNTKMVWIENPTNPLMTVFD---VKA 164
A++A G EV V L + +E L P TK++++ NP NP V ++
Sbjct: 100 ARLA---GAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEE 156
Query: 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLP--------WGVDIVLYSLTKYMNGHSDVVMG 216
++ + K+H IL++ D + Y P + IVL S +K G + +G
Sbjct: 157 LAELAKKH-GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTF-GLPGLRIG 214
Query: 217 ATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKE 261
+ + L RLK L PS L L+E
Sbjct: 215 YLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE 259
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 56.9 bits (138), Expect = 7e-09
Identities = 51/244 (20%), Positives = 84/244 (34%), Gaps = 46/244 (18%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYR 112
Y R + E I AK L A LL+ GD ++ D Y +Y
Sbjct: 78 YKRRYG-LDVDPEEEIIVTAGAKEAL--------FLAFLALLNPGDEVLIPDPGYP-SYE 127
Query: 113 YFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161
++A G + V L +E+L I P TK + + +P NP V+
Sbjct: 128 AAVKLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEE 184
Query: 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSLP---------WGVDIVLYSLTKYMNGHSD 212
+KAI + ++H DI+++ D + Y + I + S +K
Sbjct: 185 LKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG---- 239
Query: 213 VVM-----GATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
M G V + L A L+ L++ + + L P + E
Sbjct: 240 --MTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN-GPQSDEVVEEMRE 296
Query: 268 EVAK 271
E +
Sbjct: 297 EYRE 300
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 52.8 bits (128), Expect = 1e-07
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 29/118 (24%)
Query: 94 LSAGDHIISGDDVYG-GTYRYFAQ-------VAPKIGLEVDFVDLRKIENLIKYIKPNTK 145
L GD +I + +G Y AQ P D ++ ++ + P T+
Sbjct: 105 LGPGDEVIYSE--HGFAVYPIAAQAVGAKPVEVPAKDYGHD------LDAMLAAVTPRTR 156
Query: 146 MVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAY--------YQKSLPW 194
+V+I NP NP T + + + PD+L+VLD AY Y+ L
Sbjct: 157 LVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDE----AYAEYVRRKDYEDGLEL 210
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 49.9 bits (120), Expect = 9e-07
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTK 145
L+ GDH+IS VY TY+ + +G EVD+ L+ ++ L + ++PNTK
Sbjct: 100 LVEPGDHVIS---VYP-TYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTK 155
Query: 146 MVWIENPTNPLMTVFDVKAISAVVK 170
++ I N NP + D + +V+
Sbjct: 156 LICINNANNPTGALMDRAYLEEIVE 180
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 49.6 bits (119), Expect = 2e-06
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKM 146
L GD I+ D + + ++A + G +V + L ++ L K I P TK+
Sbjct: 106 RSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKL 165
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP--------WGVDI 198
V + + +N TV VK I+ + +H L+++D Q + G D
Sbjct: 166 VALSHVSNVTGTVNPVKEIAELAHEH-GALVLVD------AAQ-AAGHLPIDVQELGCDF 217
Query: 199 VLYSLTKYMNG 209
+ +S K++ G
Sbjct: 218 LAFSGHKWLLG 228
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 47.3 bits (113), Expect = 6e-06
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 38/178 (21%)
Query: 64 LERCIASL--------EEAKHGLCYSSGLGAVTAVTHLLS---AGDHIISGDDVY----- 107
L +A + + + + SG GA L GD I+ Y
Sbjct: 46 LREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIR 105
Query: 108 -----GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF-- 160
GG + + +DF L E +K K+V +P NP TV
Sbjct: 106 IFRLAGGEVVRYPLYSSN-DFHLDFDAL---EAALKEATEGNKVVLHTSPHNPTGTVATL 161
Query: 161 -DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGV---------DIVLYSLTKYMN 208
+++ + + K+H +ILL++D + + +V+ S +K
Sbjct: 162 EELEKLLDLAKEH-NILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFG 218
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 46.5 bits (111), Expect = 1e-05
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
Y AQ+A G EV V L++ ++ ++ I+ TK+V++ NP NP T+ +
Sbjct: 110 SMYEIAAQLA---GAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREE 166
Query: 165 ISAVVKQHP-DILLVLDNTFLTAYY----QKSLPWGVD----IVLYSLTK 205
+ A+++ P L+V+D AY + SL IVL + +K
Sbjct: 167 LRALLEALPEGGLVVIDE----AYIEFSPESSLELLKYPPNLIVLRTFSK 212
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 45.4 bits (108), Expect = 3e-05
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVW 148
LL+ G + + + + YR+ A + G EV V L+ +E ++K I TK+VW
Sbjct: 101 LLNPGTNTVMAEPTFS-QYRHNAIIE---GAEVREVPLKDGGHDLEAMLKAIDEQTKIVW 156
Query: 149 IENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQ 189
I NP NP T + + + + ++ +L+VLD AYY+
Sbjct: 157 ICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDE----AYYE 194
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 42.6 bits (101), Expect = 2e-04
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Query: 81 SSGLGAVTAVTHLLSAGDH---IISGDDVYGGTYRYFAQVAPKIGLEVDF--------VD 129
S L AV L+ GD +++G +G FA++A + G EV VD
Sbjct: 64 SGTLAMEAAVASLVEPGDKVLVVVNG--KFG---ERFAEIAERYGAEVVVLEVEWGEAVD 118
Query: 130 LRKIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLT 185
++E + P+ K V + E T L +K I+ K+H LL++D + L
Sbjct: 119 PEEVEEALDK-DPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEH-GALLIVDAVSSLG 173
Query: 186 AYYQKSLPWGVDIVL 200
K WG+D+ +
Sbjct: 174 GEPLKVDEWGIDVAI 188
>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
Validated.
Length = 366
Score = 42.3 bits (99), Expect = 3e-04
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 78 LCYSSGLGAVTAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK--- 132
LC SGL V + +L AGD+I++ G T+ + A G EV V L
Sbjct: 85 LC-GSGLDEVIQIISRAVLKAGDNIVTA----GATFPQYRHHAIIEGCEVKEVALNNGVY 139
Query: 133 -IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQK 190
++ + + +TK+VWI NP NP T + + ++ ++ + L+V+D + K
Sbjct: 140 DLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAK 199
Query: 191 SLP 193
P
Sbjct: 200 DFP 202
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 41.8 bits (99), Expect = 4e-04
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPN 143
++ L GD I+ + + + ++A + G V + + ++ L K + P
Sbjct: 80 SLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLDALEKLLTPR 139
Query: 144 TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
TK+V I + +N TV V+ I + ++ L+V+D
Sbjct: 140 TKLVAITHVSNVTGTVNPVEEIGKLAHEY-GALVVVD 175
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 41.5 bits (98), Expect = 4e-04
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV--------DLR 131
SG GA+ A+++LL GD ++ G V G +A +A + G +VD V
Sbjct: 57 GSGTGAMEAALSNLLEPGDKVLVG--VNGVFGDRWADMAERYGADVDVVEKPWGEAVSPE 114
Query: 132 KIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
+I ++ + + K V + E T L ++ I A+ K+H +L+V + L
Sbjct: 115 EIAEALE--QHDIKAVTLTHNETSTGVLN---PLEGIGALAKKHDALLIVDAVSSLGGEP 169
Query: 189 QKSLPWGVDIVL 200
+ WGVD+
Sbjct: 170 FRMDEWGVDVAY 181
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 41.4 bits (98), Expect = 6e-04
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVA-PKI-----GLEVDFVDLRKIENLIKYIKP 142
A+ + GD I+ + Y Y FA A KI +E F L E + K I P
Sbjct: 104 AMMAICDPGDEILVPEPFYA-NYNGFATSAGVKIVPVTTKIEEGFH-LPSKEEIEKLITP 161
Query: 143 NTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
TK + I NP NP V+ +++ ++ + K+H D+ L+ D
Sbjct: 162 KTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISD 201
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 40.3 bits (95), Expect = 0.001
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
T+ Y+ A G + + + +++++ I TK++++ P NP + +
Sbjct: 120 TFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEED 179
Query: 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGAT 218
I +++ D L+ +D AY V+ Y T + ++++G T
Sbjct: 180 IRKILES-TDALVFVDE----AY--------VEFAEYDYTPLALEYDNLIIGRT 220
>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
Provisional.
Length = 354
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 107 YGGTYRYFAQVAPKIGLEV-------DF-VDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158
+G TY +A A + V D+ + L IE L K+V+I NP NP T
Sbjct: 108 FGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQL-----DGAKLVFICNPNNPTGT 162
Query: 159 VFDVKAISAVVKQHPDILLVLD 180
V D I +++ PD ++V+D
Sbjct: 163 VIDRADIEQLIEMTPDAIVVVD 184
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 38.8 bits (91), Expect = 0.003
Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 59/207 (28%)
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVY-------- 107
+ LE +A A+ L +SSG A + ++ LL GD I S D++
Sbjct: 82 TSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFS-DELNHASIIDGI 140
Query: 108 ---GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161
R F DL +E L++ EN + V +
Sbjct: 141 RLSRAEVRRFKH-----------NDLDHLEALLE--------EARENGARRKLIVTEGVF 181
Query: 162 --------VKAISAVVKQHPDILLVLDNTFLT----------AYYQKSLPWGVDIVLYSL 203
+ + + +++ LL +D A + P VDI++ +L
Sbjct: 182 SMDGDIAPLPELVELAEKY-GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTL 240
Query: 204 TKYMNGHSDVVMGATVTNDDSLQARLK 230
K + G + +L L+
Sbjct: 241 GKALGS-----SGGYIAGSAALIDYLR 262
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 38.2 bits (89), Expect = 0.006
Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 47/270 (17%)
Query: 47 PPQGFEYSRSNNPTRRNLERCIASLE-EAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGD 104
PP+GF R E + L + L + ++ V LS GD+ ++ D
Sbjct: 64 PPEGFPELR---------ELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPD 114
Query: 105 DVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN--------LIKYIKPNTKMVWIENPTNPL 156
Y A + G EV V + E + + + NT+++++ +P NPL
Sbjct: 115 P----GYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPL 170
Query: 157 ---MTVFDVKAISAVVKQHPDILLVLDNTF--------LTAYYQKSLPWGVDIVLYSLTK 205
T ++K + + + + D L+ D T+ L A Y P + YS +K
Sbjct: 171 GSSYTEEEIKEFAEIARDN-DAFLLHDCTYRDFAREHTLAAEYA---PEHT-VTSYSFSK 225
Query: 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC---RLKEH 262
G + + +GA V D ++ + N +G + GLK R++
Sbjct: 226 IF-GMAGLRIGAVVATPDLIEVVKSIVINDLGT--NVIAQEAAIAGLKVKDEWIDRIRRT 282
Query: 263 ERGSIEVAKFLESHPCVKGVLHPGLPSHPN 292
+ ++ K E+ ++GV P PSH N
Sbjct: 283 TFKNQKLIK--EAVDEIEGVFLPVYPSHGN 310
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 37.6 bits (88), Expect = 0.007
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
TY +A+ G EV + ++ L ++ ++ + NP NP + + + A+
Sbjct: 95 TYSEYARAWRAAGHEVVELP--DLDRLPAALEEAD-LLVVCNPNNPTGRLIPPETLLALA 151
Query: 170 KQHPD--ILLVLDNTFLTAYYQKSL---PWGVD--IVLYSLTKY 206
+ LV+D F+ SL +VL SLTK+
Sbjct: 152 ARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKF 195
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 37.0 bits (87), Expect = 0.015
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 133 IENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+E L I P TK + + +P+NP V+ +++AI+ V +H DI ++ D
Sbjct: 154 VEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEH-DIWVLSD 203
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 35.9 bits (84), Expect = 0.027
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 116 QVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
Q+A + G ++ V + +E L K + TK+V + + +N L T+ VK I +
Sbjct: 107 QLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAH 166
Query: 171 QHPDILLVLD 180
+ + +++D
Sbjct: 167 EA-GVPVLVD 175
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 35.7 bits (83), Expect = 0.032
Identities = 54/224 (24%), Positives = 75/224 (33%), Gaps = 48/224 (21%)
Query: 55 RSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYF 114
+ P R E+ A+ KH L SSG A+ L G GD+V + +
Sbjct: 20 TTGGPEVRAFEKAFAAYLGVKHALAVSSGTSALHLALRALGIGP----GDEVIVPAFTFV 75
Query: 115 AQVAP--KIGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV---- 159
A ++G FVD IE I P TK + M V
Sbjct: 76 ATANAVLQLGATPVFVDVDPDTYNIDPAAIEAA---ITPRTKAI---------MPVHLYG 123
Query: 160 --FDVKAISAVVKQHPDILLVLDN--TFLTAYYQKSLPWGVDIVLYSL--TK---YMNGH 210
D+ AI A+ +H + ++ D Y K + D +S TK G
Sbjct: 124 QPADMDAIRAIAAEH-GLPVIEDAAHAHGATYKGKRVGTFGDAATFSFYPTKNITTGEG- 181
Query: 211 SDVVMGATVTNDDSLQARLKFLQN-SMGVVPSPFDCWLVTRGLK 253
GA VT+D L R + L+N G V G
Sbjct: 182 -----GAVVTDDPELAERARCLRNHGCGRPAFRRYRHEVPLGYN 220
>gnl|CDD|148445 pfam06838, Alum_res, Aluminium resistance protein. This family
represents the aluminium resistance protein, which
confers resistance to aluminium in bacteria. Structural
characterisation has shown proteins in this family bind
a pyridoxal-5'-phosphate cofactor, and that they belongs
to the PLP dependent aminotransferase superfamily.
Crystal packing analysis suggests that in solution, a
tetramer may be the stable oligomeric form. This is in
contrast to most other aminotransferases which form
dimers (information from TOPSAN).
Length = 405
Score = 35.8 bits (83), Expect = 0.035
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 124 EVDFVDLRKI--ENLIKYIKPNTKMVWIENPTN----PLMTVFDVK-AISAVVKQHPDIL 176
EV ++ K+ + + I PNTK++ I+ P +T+ ++K I V + +P+++
Sbjct: 134 EVPLLENGKVDWQAVKTAITPNTKLIGIQRSKGYAWRPSLTIAEIKEMIKFVKEINPNVI 193
Query: 177 LVLDN---TFLTAYYQKSLPWGVDIVLYSLTK 205
+ +DN F+ ++ G D++ SL K
Sbjct: 194 VFVDNCYGEFVE--TKEPTHVGADLIAGSLIK 223
>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
Length = 402
Score = 35.1 bits (81), Expect = 0.050
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 134 ENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTF 183
E L I P T+ + + P+NP V+ +++A++ V+ +HP +L++ D+ +
Sbjct: 157 EALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIY 209
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 35.3 bits (82), Expect = 0.050
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 27/109 (24%)
Query: 86 AVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGLEVDF-VDLRKIE 134
A+ A+ GD +I D Y GG A P DF VD ++
Sbjct: 107 AILALVR---PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP------DFRVDWQRFA 157
Query: 135 NLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
I P T+++ + P NP TV+ D++A+ ++ DI ++ D
Sbjct: 158 AAIS---PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGT-DIYVLSD 202
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 34.9 bits (81), Expect = 0.057
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIEN 151
GD ++ Y Y A++ G EV V L + +E+++ I K+V++ +
Sbjct: 95 GDAVLVPPPTYS-MYEISAKI---HGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCS 150
Query: 152 PTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
P NP + I AV+++ P D L+V+D AY
Sbjct: 151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDE----AYG 184
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 34.3 bits (79), Expect = 0.087
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 50 GFEYSRSNN----PTRRNLERC---IASL---EEAKHGLCYSSGLGAV-TAVTHLLSAGD 98
G R R +E +A L + H + ++ A+ A+ LL GD
Sbjct: 28 GGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGD 87
Query: 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPT 153
H+I+ + R + +IG+E+ V E + + IK NTK++ + + +
Sbjct: 88 HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHAS 147
Query: 154 NPLMTVFDVKAISAVVKQHPDILLVLD 180
N T+ ++ I + +++ I +LD
Sbjct: 148 NVTGTILPIEEIGELAQEN-GIFFILD 173
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 34.2 bits (79), Expect = 0.090
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 30/145 (20%)
Query: 59 PTRRNLERCIASLEEAKHGLCYSSG------LGAVTAVTH----LLSAGDHIISGDDVY- 107
P L IA+ ++GL Y +GA A+ L+ GD ++ + Y
Sbjct: 61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYD 120
Query: 108 ---------GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158
G V G +D LR + P T+ + + +P NP T
Sbjct: 121 SYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAA------VTPRTRALIVNSPHNPTGT 174
Query: 159 VF---DVKAISAVVKQHPDILLVLD 180
V ++ AI+ + +H D+L++ D
Sbjct: 175 VLTAAELAAIAELAVEH-DLLVITD 198
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 34.1 bits (79), Expect = 0.10
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 32/205 (15%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
R E+ A K+ + SSG TA HL I GD+V ++ + A +
Sbjct: 37 RRFEQAFAEYLGVKYAVAVSSG----TAALHLALLALAIGPGDEVIVPSFTFVATANAVL 92
Query: 122 --GLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP 173
G + FVD+ + + I P TK + P + D+ AI A+ K+H
Sbjct: 93 LVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALAKRH- 148
Query: 174 DILLVLD--NTFLTAY-YQKSLPWGVDIVLYSL--TKYMN---GHSDVVMGATVTNDDSL 225
+ ++ D Y +K +G DI +S TK + G GA VTND+ L
Sbjct: 149 GLPVIEDAAQAHGATYKGKKVGSFG-DIGAFSFHATKNLTTGEG------GAVVTNDEEL 201
Query: 226 QARLKFLQNSMGVVPSPFDCWLVTR 250
+ + L+N G+ +L
Sbjct: 202 AEKARSLRNH-GLSRDAVFKYLHEE 225
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 34.0 bits (78), Expect = 0.14
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 26/141 (18%)
Query: 47 PPQGFEYSRSNNPTR-RNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGD 104
P G +R + N + I EA + S A+ + L +AG +I+
Sbjct: 71 PTVGALSAREAIASYYHNPDGPI----EADDVVLCSGCSHAIEMCIAALANAGQNIL--- 123
Query: 105 DVYGGTYRYFAQVAPKIGLEVDF----------VDLRKIENLIKYIKPNTKMVWIENPTN 154
V + + +A +G+EV +DL+++E+LI T + + NP+N
Sbjct: 124 -VPRPGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLESLID---EKTAALVVNNPSN 179
Query: 155 PLMTVFD---VKAISAVVKQH 172
P +VF ++ I AV ++
Sbjct: 180 PCGSVFSRQHLEEILAVAERQ 200
>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins
[Carbohydrate transport and metabolism].
Length = 217
Score = 33.0 bits (76), Expect = 0.19
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 119 PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
P + + +D +DL + + + + + IE T PL+ ++A+ A+ + PD ++V
Sbjct: 4 PLLQVALDLLDLEEAIEIAEEVADY--VDIIEVGT-PLIKAEGMRAVRALRELFPDKIIV 60
Query: 179 LD 180
D
Sbjct: 61 AD 62
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 33.0 bits (76), Expect = 0.23
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 111 YRYFAQVAPKIGLEV-----DFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165
Y QVA ++V DL + + I T+++++ NP NP TV +
Sbjct: 111 YPILVQVAGATPVQVPLTPDHTHDL---DAMAAAITDRTRLIFVCNPNNPTGTVVTPAEL 167
Query: 166 SAVVKQHP-DILLVLD 180
+ + P D+L+VLD
Sbjct: 168 ARFLDAVPADVLVVLD 183
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 33.0 bits (76), Expect = 0.27
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 116 QVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
+A + G + F+ L +++L K + TK+V I + +N L TV V+ I+ +
Sbjct: 127 LLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAH 186
Query: 171 QHPDILLVLD 180
Q +++D
Sbjct: 187 QV-GAKVLVD 195
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 32.7 bits (75), Expect = 0.36
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 52/159 (32%)
Query: 63 NLERCIASLEEAKHGL------CYSSGLGAVTA----VTHLLSAGDHIISGDDVY---GG 109
NL + E K L Y+ +GA+ A +L S ++ DDV G
Sbjct: 46 NLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGC 105
Query: 110 T-----------------------YRYFAQVAPKIGLEVDF----------VDLRKIENL 136
+ + + A GLEV +DL +E+L
Sbjct: 106 SQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLESL 165
Query: 137 IKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQH 172
T + + NP+NP +VF ++ I+ V ++
Sbjct: 166 AD---EKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKL 201
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 32.5 bits (75), Expect = 0.37
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 122 GLEVDFVD-----LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
G EV ++ L +E L + ++P+T +V I + N T+ + I + K+ IL
Sbjct: 115 GFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG-IL 173
Query: 177 LVLD 180
+D
Sbjct: 174 FHVD 177
>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), N-terminal domain [Amino acid
transport and metabolism].
Length = 450
Score = 31.8 bits (73), Expect = 0.54
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
A +G+E++ VD +++L + V ++ P + D++A+ +++
Sbjct: 185 AEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVI 244
Query: 178 VLDN----TFLTAYYQKSLP--WGVDIVL 200
V + L P +G DIV+
Sbjct: 245 VAADPLALGLLKP------PGEFGADIVV 267
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 31.8 bits (73), Expect = 0.63
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIIS 102
+ LE +A + L +SSG A ++ L GD IIS
Sbjct: 44 TSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIIS 90
>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
Length = 384
Score = 31.7 bits (72), Expect = 0.68
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGD---DVYGGTYRYFAQVAPKIGLEVDFVDLR-KIENL 136
S+ G A++ L+ GD +I + D Y R Q A + +++ D R + +
Sbjct: 98 SASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRL--QGATPVAIKLSPEDFRVNWDEV 155
Query: 137 IKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTF 183
I P T+M+ + P NP TVF D+ ++ + ++ DI+++ D +
Sbjct: 156 AAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLT-RNTDIVILSDEVY 204
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 30.6 bits (70), Expect = 0.88
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 119 PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
P + + +D +DL + L K + + IE T PL+ ++A+ A+ + PD ++V
Sbjct: 1 PLLQVALDLLDLEEALELAKKVPDG--VDIIEAGT-PLIKSEGMEAVRALREAFPDKIIV 57
Query: 179 LD 180
D
Sbjct: 58 AD 59
>gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ;
Provisional.
Length = 431
Score = 31.2 bits (71), Expect = 0.93
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 32/172 (18%)
Query: 85 GAVTAVTHLLSAGDHIISGDDVYG---------GTYRYFAQVAPKIGLEVDFVDLRKIEN 135
GA+ A+ LL A H++ GD V RY A + + VD + + E
Sbjct: 149 GAIDAIERLLCA--HLLPGDSVAVEDPCFLSSINMLRY-AGFSA-SPVSVD-AEGMQPEK 203
Query: 136 LIKYIKPNTKMVWI----ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL---TAYY 188
L + + + V + NPT ++ A+ ++ ++P +L+++D+ F ++ Y
Sbjct: 204 LERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY 263
Query: 189 QKSLP-----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
+P W ++ S++K + D+ + A V +D + ARL+ NS
Sbjct: 264 HSVIPQTTQRWA---LIRSVSKALG--PDLRL-AFVASDSATSARLRLRLNS 309
>gnl|CDD|184439 PRK13986, PRK13986, urease subunit alpha; Provisional.
Length = 225
Score = 30.2 bits (68), Expect = 1.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMV 147
V L+ G ++ DDV G A + ++G+E F D K+ + I+ N K+V
Sbjct: 54 VAELMQEGRTLLKPDDVMDGV----ASMIHEVGIEAMFPDGTKLVTVHTPIEANGKLV 107
>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf,
the mostly archaeal uridine monophosphate kinase
(uridylate kinase) enzymes that catalyze UMP
phosphorylation and play a key role in pyrimidine
nucleotide biosynthesis; regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinase of
Pyrococcus furiosus (Pf) is known to function as a
homohexamer, with GTP and UTP being allosteric
effectors. Like other related enzymes (carbamate kinase,
aspartokinase, and N-acetylglutamate kinase) the E. coli
and most bacterial UMPKs have a conserved, N-terminal,
lysine residue proposed to function in the catalysis of
the phosphoryl group transfer, whereas most archaeal
UMPKs (this CD) appear to lack this residue and the
Pyrococcus furiosus structure has an additional Mg ion
bound to the ATP molecule which is proposed to function
as the catalysis instead. Members of this CD belong to
the Amino Acid Kinase Superfamily (AAK).
Length = 221
Score = 29.9 bits (68), Expect = 1.7
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 100 IISGDDVYGGTYRYFAQVAPKI----GLEVDFVDLRKIENLIKYIKPNTKMVWIE 150
I+ G+ F +A KI G++ VD R ENL + +K IE
Sbjct: 167 IVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 30.2 bits (69), Expect = 1.8
Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 66/188 (35%)
Query: 85 GAVTAVTHLLSAGDHIIS-GDDV-----YGGTYRYFAQ--------VAPKIGLEVDF-VD 129
GA A+ L A I++ GD+V Y YR++ V F D
Sbjct: 104 GAAGALNVALKA---ILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD---TDTFQPD 157
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQ------HPDIL---- 176
L +E I P TK V I +P NP V+ +KA++A++++ P L
Sbjct: 158 LDALE---AAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDE 214
Query: 177 ----LVLDNT---FLTAYYQKSLPWGVDIVLYSLTK----------Y------MNGHSDV 213
+V D ++ YY S IV+YS +K Y M D+
Sbjct: 215 PYREIVYDGAEVPYIFKYYDNS------IVVYSFSKSLSLPGERIGYIAVNPEMEDADDL 268
Query: 214 VMGATVTN 221
V N
Sbjct: 269 VAALVFAN 276
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 30.5 bits (69), Expect = 1.8
Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKP 142
A++ GD +I + + Q A + G +V + + ++L + P
Sbjct: 96 AISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP 155
Query: 143 NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP----WGVDI 198
T++V + +N L ++ D+ AI+ +V L+V+D Y L G D
Sbjct: 156 RTRLVAVTAASNTLGSIVDLAAITELVHA-AGALVVVDA---VHYAPHGLIDVQATGADF 211
Query: 199 VLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234
+ S K+ H ++ G + +L F +
Sbjct: 212 LTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYD 247
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 30.2 bits (68), Expect = 2.0
Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 23/144 (15%)
Query: 111 YRYFAQVAPKIGLEVDF-----VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165
Y ++++A + + V D+ +I+ +P K+V++ NP NP +V + + I
Sbjct: 113 YSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQP--KLVFLCNPNNPTGSVIEREDI 170
Query: 166 SAVVKQHPDILLVLDNTFLTAYYQKSLPWGVD-----IVLYSLTKYMNGHSDVVMGATVT 220
++++ I++V + F +Y ++ ++ IVL +L+K G + + +G V
Sbjct: 171 IKIIEKSRGIVVVDEAYF--EFYGNTIVDVINEFENLIVLRTLSKAF-GLAGLRVGYAVA 227
Query: 221 NDDSLQARLKFLQNSMGVVPSPFD 244
N++ LK+L +V SP++
Sbjct: 228 NENI----LKYLN----LVKSPYN 243
>gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.
Length = 360
Score = 30.0 bits (68), Expect = 2.2
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 133 IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL----TAYY 188
++ L + PN + + NP NP ++ +AI +++Q L+V+D F+
Sbjct: 139 LQTLPPQLTPN-DGLLLNNPHNPTGKLWSREAILPLLEQFA--LVVVDEAFMDFLPPDAE 195
Query: 189 QKSLPWGVD----IVLYSLTKY 206
Q +P + I+L SLTK+
Sbjct: 196 QSLIPCLAEYPNLIILRSLTKF 217
>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase;
Provisional.
Length = 371
Score = 29.7 bits (67), Expect = 2.5
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 38/142 (26%)
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDI 175
V P +G ++D L + +M+ NP+NP+ + ++ V+ P+
Sbjct: 141 VTPDLGFDLD--------ALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPET 192
Query: 176 LLVLDNTFLTAYYQ----------------KSLPWGVDIVLYSLTKYMNGHSDVVMGATV 219
L+V+D AY + + LPW IVL + +K G + + +G +
Sbjct: 193 LIVVDE----AYAEYAAGDDYPSALTLLKARGLPW---IVLRTFSKAY-GLAGLRVGYGL 244
Query: 220 TNDDSL-----QARLKFLQNSM 236
+D L + R F N
Sbjct: 245 VSDPELVGLLDRVRTPFNVNGA 266
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 29.8 bits (67), Expect = 2.8
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 40/177 (22%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTH--------LLSAGDHIISGD---------- 104
L I E+ K+G+ + VT AVT LL GD I+
Sbjct: 75 LREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLV 134
Query: 105 DVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
YGG + + + G + D D+RK I TK + + NP NP +++ K
Sbjct: 135 KFYGGVPVEYRTIEEE-GWQPDIDDIRK------KITEKTKAIAVINPNNPTGALYEKKT 187
Query: 165 ISAVVK---QHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTK-----YMNGHSDV 213
+ ++ +H D+ ++ D + Y+ G + SLTK MNG S V
Sbjct: 188 LKEILDIAGEH-DLPVISDEIYDLMTYE-----GKHVSPGSLTKDVPVIVMNGLSKV 238
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 29.3 bits (66), Expect = 3.3
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 87 VTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLI 137
A+ LL+A HII+ + + YF + G V + + K + +L
Sbjct: 74 YLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLE-SQGYTVTEIPVDKSGLIRLVDLE 132
Query: 138 KYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD--NTF 183
+ I P+T + I++ + + T+ + I A++K++ ++L D TF
Sbjct: 133 RAITPDTVLASIQHANSEIGTIQPIAEIGALLKKY-NVLFHSDCVQTF 179
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 29.5 bits (67), Expect = 3.4
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 31/127 (24%)
Query: 81 SSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQV------APKI-GLEVDFVDLR- 131
SSG+ A+ A L+ GD ++ + APKI G V V L
Sbjct: 91 SSGVQALMLAAQALVGPGDEVV-----------AVTPLWPNLVAAPKILGARVVCVPLDF 139
Query: 132 -------KIENLIKYIKPNTKMVWIENPTNPL---MTVFDVKAISAVVKQHPDILLVLDN 181
++ L+ I P T+ ++I +P NP + D++AI A ++H + +V D
Sbjct: 140 GGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRH-GLWIVADE 198
Query: 182 TFLTAYY 188
+ YY
Sbjct: 199 VYERLYY 205
>gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase;
Provisional.
Length = 369
Score = 29.2 bits (66), Expect = 3.8
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 90 VTHLLSAGDHIISGDDVYGGTYRY----FAQVAPKIGLEVDFVDLRKIENLIKYIKPNTK 145
V + GD +++ Y T+ Y F + D DL + L + N
Sbjct: 101 VRLYVEPGDPVVTSLGAYP-TFNYHVAGFGGRLVTVPYRDDREDLDAL--LDAARRENAP 157
Query: 146 MVWIENPTNPLMTVFDVKAISAVVKQHPD-ILLVLD 180
+V++ NP NP+ + I A ++ P+ LLVLD
Sbjct: 158 LVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLD 193
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 29.3 bits (66), Expect = 3.8
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 23/118 (19%)
Query: 140 IKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGV 196
I TK + + +P NP V +++ I+ +V++H D++++ D + Y ++
Sbjct: 151 ITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKH-DLIVLSDEIYAELTYDEAY---- 205
Query: 197 DIVLYSLTKYMNGHSDVV-------------MGATVTNDDSLQARLKFLQNSMGVVPS 241
++ K M + ++ +G +A LK Q SM P+
Sbjct: 206 --TSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPT 261
>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated.
Length = 433
Score = 29.1 bits (66), Expect = 4.3
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK--QHPDILLVLDNTFLTA 186
DL +EN +KY P+ + + NP NP V+ + + +V + D+ ++ D +
Sbjct: 158 DLDDLENKVKY-NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNI 216
Query: 187 YY--QKSLP 193
Y +K++P
Sbjct: 217 VYNGKKTVP 225
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 28.9 bits (65), Expect = 4.5
Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTF- 183
++++K+E LI TK + + +P NP VF ++ I+ + ++ D+ ++ D +
Sbjct: 150 INVKKLEALIT---SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISDEVYD 205
Query: 184 LTAYYQKSLP 193
++Y+ +P
Sbjct: 206 GFSFYEDFVP 215
>gnl|CDD|240321 PTZ00230, PTZ00230, variable surface protein Vir7; Provisional.
Length = 364
Score = 29.0 bits (65), Expect = 4.6
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 252 LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLH--PGLPSHPNHELAKSQWSGTSGMLSF 309
L T C+L+E + S ++ + E + L PGL + + S LS
Sbjct: 202 LSTWKCKLEETDPQSKQLEEGDEGERVQQPTLTAIPGLEGEESLSVPPSDEXSPGSTLS- 260
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSI 352
R F + + E + D P +T KSI
Sbjct: 261 ---------RGFSDVRVPDSGIELGSIADPSNDSPTSITSKSI 294
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 29.0 bits (65), Expect = 4.7
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 78 LCYSSGLGAVTAVTHLLSAGDHIISGD----------DVYGGTYRYFAQVAPKIGLEVDF 127
LC + A+T L GD+I+ YG R++ P+ E D
Sbjct: 109 LCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFY-NCRPEKDWEADL 167
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK--QHPDILLVLD 180
++R++ + TK + + NP+NP + F K + +++ + + L+ D
Sbjct: 168 DEIRRL------VDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISD 216
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
domain. Putative methyl transferase, based on outlier
plant homologues.
Length = 124
Score = 27.7 bits (62), Expect = 5.2
Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 127 FVDLRKIENLIKYI----KPNTKMVWIENPTNPLMTVFDVKAISA 167
+D R+ NL ++I +PN +++++E + + +F ++ I
Sbjct: 65 CIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKP 109
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 28.6 bits (64), Expect = 5.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-----WGVDIVLYSLTKYMNG 209
D++AI+A+ QH L+ D A+ ++P G D + KY+NG
Sbjct: 183 LDMRAITALAHQHG-ALVGWD----LAHSAGAVPVDLHAAGADFAIGCSYKYLNG 232
>gnl|CDD|220574 pfam10106, DUF2345, Uncharacterized protein conserved in bacteria
(DUF2345). Members of this family are found in various
bacterial hypothetical proteins, as well as Rhs element
Vgr proteins.
Length = 156
Score = 27.9 bits (63), Expect = 6.2
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 83 GLGAVTAVTHLLSAGDHI--ISGDDVY---GGTYRYFAQVAPKIGL 123
G+ T + L+AG+H+ +G D G A I L
Sbjct: 25 GIALTTPQSLHLAAGEHLALTAGQDTQLAAGK--SLLASAGDGISL 68
>gnl|CDD|227099 COG4757, COG4757, Predicted alpha/beta hydrolase [General function
prediction only].
Length = 281
Score = 28.3 bits (63), Expect = 6.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 106 VYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134
V YR FA A K G EV D R I
Sbjct: 41 VGQYFYRRFAAAAAKAGFEVLTFDYRGIG 69
>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). Every member of this clade is from a
genome which possesses most of the lysine biosynthesis
pathway but lacks any of the known aminotransferases,
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Although there is no experimental characterization of
any of the sequences in this clade, a direct pathway is
known in plants and Chlamydia and the clade containing
the Chlamydia gene is a neighboring one in the same
pfam00155 superfamily so it seems quite reasonable that
these enzymes catalyze the same transformation.
Length = 383
Score = 28.1 bits (63), Expect = 8.0
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 25/104 (24%)
Query: 145 KMVWIENPTNPLMTVFDVKAISAVV---KQHPDILLVLDNTFLTAYYQKSLPWG------ 195
K+++I P NP V +K +V K++ +I++ DN + +
Sbjct: 166 KLMFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDG 224
Query: 196 ---VDIVLYSLTKYMN----------GHSDVV--MGATVTNDDS 224
V I +SL+K N G++D++ +G TN DS
Sbjct: 225 AKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDS 268
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 28.0 bits (63), Expect = 8.6
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 144 TKMVWIENPTNPLMTVFDVKAISAVV---KQHPDILLVLDNTFLTAYYQKSLPWG----- 195
K+++I P NP V D++ VV K++ DI++ D + Y P
Sbjct: 167 AKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVP 225
Query: 196 ----VDIVLYSLTKYMN----------GHSDVV--MGATVTNDDS 224
V I +SL+K N G++D++ +G +N DS
Sbjct: 226 GAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDS 270
>gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional.
Length = 471
Score = 28.1 bits (63), Expect = 8.9
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK 253
S T + +D + A +TN+ + R + L+N MG+ WL+ R L+
Sbjct: 249 SQTPFT---NDTALAANITNEGGAEGRYRVLKNIMGL-------WLLQRVLQ 290
>gnl|CDD|147046 pfam04693, DDE_Tnp_2, Archaeal putative transposase ISC1217.
Length = 327
Score = 28.0 bits (62), Expect = 9.1
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSLP 193
++A+ VV HP ++L++D+T Y ++ P
Sbjct: 73 IEAVKKVVIDHP-VVLIIDDTHDHKLYARAEP 103
>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
Length = 387
Score = 28.0 bits (63), Expect = 9.4
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 134 ENLIKYIKPNTKMVWIENPTNPLMTVFD 161
L P TK V + NP NP VF
Sbjct: 150 AALAAAFSPRTKAVLLNNPLNPAGKVFP 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,045,536
Number of extensions: 1921900
Number of successful extensions: 2149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1948
Number of HSP's successfully gapped: 130
Length of query: 393
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 294
Effective length of database: 6,546,556
Effective search space: 1924687464
Effective search space used: 1924687464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)