RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12791
(393 letters)
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 648 bits (1675), Expect = 0.0
Identities = 222/389 (57%), Positives = 284/389 (73%), Gaps = 1/389 (0%)
Query: 2 SFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTR 61
FLP FAT+A+H+G +P+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 GFLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTR 69
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA +
Sbjct: 70 NCLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEF 129
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
GL++ FVD KI+ L I P TK+VWIE PTNP V D++ + +V +H DI+LV+DN
Sbjct: 130 GLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDN 189
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241
TF++ Y+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPS
Sbjct: 190 TFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPS 249
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HEL K Q +
Sbjct: 250 PIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT 309
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
G +GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+ K RD LG
Sbjct: 310 GCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLG 369
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRKA 390
I+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 ISDTLIRLSVGLEDEEDLLEDLDQALKAA 398
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 623 bits (1608), Expect = 0.0
Identities = 190/393 (48%), Positives = 259/393 (65%), Gaps = 9/393 (2%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
L + FATKA+H G D S VI PI LSTTFKQ++P P +EYSRS NP R N
Sbjct: 2 LQESDKFATKAIHAGEHVDVHGS--VIEPISLSTTFKQSSPANPIGTYEYSRSQNPNREN 59
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LER +A+LE A++GL +SSG + L G H +S DVYGGT+RYF +VA G+
Sbjct: 60 LERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH---PDILLVLD 180
E F + + +L + IK NTK+VWIE PTNP + V D++ ++ ++K+H D++LV+D
Sbjct: 120 ETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP 240
NTFL+ Y L +G DIV++S TKY+NGHSDVV+G TN+ L RL+FLQN++G +P
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP 238
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHP-CVKGVLHPGLPSHPNHELAKSQ 299
SPFD WL RGLKTL R+++ + ++A+FL + V V +PGL +HPN+++ Q
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298
Query: 300 WSG--TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
GM+SF + GGAE F S +F AESLGGIESL ++PA MTH IPKE R
Sbjct: 299 HRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAR 358
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+A G+ D+LVR+SVG+E DL+ D+ QAL++A
Sbjct: 359 EASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 618 bits (1596), Expect = 0.0
Identities = 178/383 (46%), Positives = 253/383 (66%), Gaps = 5/383 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT A+H G PD + V+PPI ++T+ Q++PG+ QGFEYSR++NPTR ERC+A
Sbjct: 20 LATLAIHGGQSPDPS-TGAVMPPIYATSTYAQSSPGEH-QGFEYSRTHNPTRFAYERCVA 77
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK-IGLEVDFV 128
+LE ++SG+ A + V LL AG H+++ DD+YGGT+R F +V + GL+ FV
Sbjct: 78 ALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
DL I+ +TKMVWIE PTNP++ + D+ AI+ + ++H +L V+DNTF +
Sbjct: 138 DLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH-GLLTVVDNTFASPML 196
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATV-TNDDSLQARLKFLQNSMGVVPSPFDCWL 247
Q+ L G D+V++S TKY+NGHSD+V G V ++ L ++ FLQNS+G V PFD +L
Sbjct: 197 QRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFL 256
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
RGLKTLP R++ H ++ +A++LE+HP ++ V++PGL SHP H LAK Q SG G++
Sbjct: 257 ALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIV 316
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
S + GG + + F E +F AESLGG+ESL + PA MTH SIP R+ LGI+D LV
Sbjct: 317 SIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALV 376
Query: 368 RLSVGVEGYTDLIADLDQALRKA 390
RLSVG+E DL DL++AL
Sbjct: 377 RLSVGIEDLGDLRGDLERALVNQ 399
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 615 bits (1589), Expect = 0.0
Identities = 151/384 (39%), Positives = 221/384 (57%), Gaps = 4/384 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT AV G D+ CV+PPI LS+T+ +P + +YSR NPTR ++R +A
Sbjct: 5 QATIAVRSGLNDDEQ-YGCVVPPIHLSSTYNFTGFNEP-RAHDYSRRGNPTRDVVQRALA 62
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
LE + ++G+ A+ VT + L GD +++ D YGG+YR F +A + V FV
Sbjct: 63 ELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
D + L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+
Sbjct: 123 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV-GAVSVVDNTFLSPAL 181
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q L G D+VL+S TKY+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 182 QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL 241
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLS
Sbjct: 242 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLS 301
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F ++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R
Sbjct: 302 FELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLR 361
Query: 369 LSVGVEGYTDLIADLDQALRKACK 392
+S G+E DLIADL+ R A K
Sbjct: 362 ISTGIEDGEDLIADLENGFRAANK 385
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 615 bits (1588), Expect = 0.0
Identities = 160/384 (41%), Positives = 221/384 (57%), Gaps = 6/384 (1%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNL 64
+ AT+A+H G PD + V PI S+TF Q+ G G+EY+R+ NPTR L
Sbjct: 13 HRFAGLATRAIHSGYRPDPA-TGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTAL 71
Query: 65 ERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
E +A++E+A G +SSG+ A +L GDH++ DD YGGT+R +V +
Sbjct: 72 EAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
E V L ++ + I+P T+++W+E PTNPL+++ D+ I+ + +++DNTF
Sbjct: 132 EYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS-SAKVLVDNTF 190
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243
+ Q+ L G D+VL+S TKY+ GHSDVV GA VTND+ L FLQN G VP PF
Sbjct: 191 ASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPF 250
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
D +L RGLKTL R++ H + VA+FL HP + VL+PGLPSHP H +A Q G
Sbjct: 251 DAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGF 310
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
GM+S + G IF AESLG +ESL + P+ MTH S +
Sbjct: 311 GGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQL---EVP 367
Query: 364 DNLVRLSVGVEGYTDLIADLDQAL 387
D+LVRLSVG+E DL+ DL QAL
Sbjct: 368 DDLVRLSVGIEDVADLLDDLKQAL 391
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 611 bits (1579), Expect = 0.0
Identities = 147/386 (38%), Positives = 236/386 (61%), Gaps = 5/386 (1%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
+ ++ + +T V++ ++ D + + + P+ + TFKQ + + ++Y+RS NPTR
Sbjct: 81 IKEEASVSTLLVNLDNKFDPFDA--MSTPLYQTATFKQPSAIEN-GPYDYTRSGNPTRDA 137
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LE +A L++A C++SG+ A++AVTHL+ G+ I++GDDVYGG+ R +QV P+ G+
Sbjct: 138 LESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV 197
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
V V+ K++ + I P TK+VW+E+PTNP + D++ IS + L+++DN+
Sbjct: 198 VVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ-GALVLVDNSI 256
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243
++ + L G DIV++S TK++ GHSDV+ G + L + FLQNS G +PF
Sbjct: 257 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPF 316
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
DCWL RG+KT+ R+++ + + ++A +L SHP VK V + GLP HP H L SQ G
Sbjct: 317 DCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGA 376
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
+ SF G ++ +E+ F A S G ++SL +P M+H SIP E R+A G+T
Sbjct: 377 GSVFSFIT-GSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLT 435
Query: 364 DNLVRLSVGVEGYTDLIADLDQALRK 389
++LVR+S G+E DLI+DLD A +
Sbjct: 436 EDLVRISAGIEDVDDLISDLDIAFKT 461
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 582 bits (1502), Expect = 0.0
Identities = 131/399 (32%), Positives = 213/399 (53%), Gaps = 12/399 (3%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQ-CVIPPIILSTTFKQNTPGQP-------PQGFE 52
M + + + A+H G + + P++ ++ + N + FE
Sbjct: 48 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFE 107
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTY 111
Y R NPT LE I++LE A+ L +SG+ A T + L+ AG HI++ D Y T
Sbjct: 108 YGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTR 167
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
+ + PK+G+ +D + L + + + + E+PTNP + D++ +S +
Sbjct: 168 IFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCH 227
Query: 171 QHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230
+ L+ +D TF T QK+L G D+VL+S TK++ GH+DV+ G ++ L + ++
Sbjct: 228 EK-GALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIR 285
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
L + +G +P +L+ RG+KTL R+++ ++ +A+ LE+HP V+ V +PGL SH
Sbjct: 286 NLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSH 345
Query: 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350
P H +AK Q +G G +SF V+G T F+++L I A S GG ES+ D PA M++
Sbjct: 346 PEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYW 405
Query: 351 SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + R GI DNLVR S GVE + DL AD+ QAL
Sbjct: 406 DLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDS 444
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 578 bits (1493), Expect = 0.0
Identities = 146/399 (36%), Positives = 227/399 (56%), Gaps = 11/399 (2%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEY 53
M + FAT+A+H G +P ++PP+ + TF T G Y
Sbjct: 1 MHGSNKLPGFATRAIHHGYDPQDH-GGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFY 59
Query: 54 SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYR 112
SR +NPT LE +ASLE + GL +SG+GA+T+ LL GD ++ G+ +YG T+
Sbjct: 60 SRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFA 119
Query: 113 YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172
+ + G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H
Sbjct: 120 FLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH 179
Query: 173 PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKF 231
+V+DNT+ T Y Q+ L G D+V++S TKY++GH D+ G V + + + RL+
Sbjct: 180 -GATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG 238
Query: 232 LQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHP 291
L++ G V SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P
Sbjct: 239 LKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFP 298
Query: 292 NHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351
+ LA+ Q S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S
Sbjct: 299 QYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSS 358
Query: 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
E R GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 359 YTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 578 bits (1493), Expect = 0.0
Identities = 154/392 (39%), Positives = 228/392 (58%), Gaps = 11/392 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRR 62
AT +H + DQ+ + IPPI ++TF + Q G+ Y+R NPT
Sbjct: 8 PATACIHANPQKDQFGA--AIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVS 65
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
NLE IA LE+ + + SSG+GA+ A V +L AGDH+IS + +YG T+ F K
Sbjct: 66 NLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF 125
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G++VDF++ + K++KPNTK+V+ E P NP + + D++ + +L++ DN
Sbjct: 126 GIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 185
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVP 240
TF + + +GVD+V++S TKY+NGH+DVV G D L Q R+ +++ G V
Sbjct: 186 TFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVI 245
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SP D WL+TRGL TL R+K +++VA++L+SHP V+ V +PG H H++AK Q
Sbjct: 246 SPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM 305
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
M++F + G E + L++L + A SLGG ESL PA MTH +PKE R+A
Sbjct: 306 RMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAA 365
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
GITD ++RLSVG+E +LIAD Q L +
Sbjct: 366 GITDGMIRLSVGIEDADELIADFKQGLDALLR 397
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 575 bits (1484), Expect = 0.0
Identities = 143/386 (37%), Positives = 208/386 (53%), Gaps = 13/386 (3%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRR 62
T +H + PI ++TF ++ Q +G YSR NPT
Sbjct: 6 ITTTLLHPKGDHVLH---SHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVE 62
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
E + S+E A + SG+GA+++ L GDH+I+GD +YG T F P+
Sbjct: 63 QFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF 122
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+EVD +D +E + KPNTKMV++E+P NP V D+K I+ V + LV+D
Sbjct: 123 GIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER-GARLVVDA 181
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241
TF + + K L G DI L+S++KY+NGH DV+ G + A +KF + G + +
Sbjct: 182 TFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA 241
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D +L RG+KTLP R++ H ++VAKFLE H + V HPGL S P H++AK Q +
Sbjct: 242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT 301
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
G F + E + +E L + A SLG +++L + PA MTH ++P+ G
Sbjct: 302 GYGSTFLFEMKSF-EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQG 360
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQAL 387
IT LVR+SVG+E D+IADL QAL
Sbjct: 361 ITPELVRISVGIENVDDIIADLKQAL 386
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 552 bits (1425), Expect = 0.0
Identities = 112/396 (28%), Positives = 196/396 (49%), Gaps = 16/396 (4%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ--------PPQGFEYSRSN 57
D T+ V+ G + V I +++ ++ Y R
Sbjct: 22 ADKKLDTQLVNAGRSKK-YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRG 80
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQ 116
T +L++ + LE + + G AV ++ + GDH++ + Y + + ++
Sbjct: 81 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSK 140
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDI 175
+ K+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+ PD
Sbjct: 141 ILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA 200
Query: 176 LLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
++++DNT+ K+L +G+D+ + + TKY+ GHSD ++G V N +L+
Sbjct: 201 IIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYL 259
Query: 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295
MG + ++ +RGL+TL RL++H S++VA++L HP V V HP LP HE
Sbjct: 260 MGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEF 319
Query: 296 AKSQWSGTSGMLSFYVNGG--AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353
K ++G+SG+ SF + EE +L++ +F A S GG ESL +I
Sbjct: 320 WKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR 379
Query: 354 KETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + + L+RL +G+E DLIADLD +
Sbjct: 380 PQGE--IDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 550 bits (1421), Expect = 0.0
Identities = 157/395 (39%), Positives = 233/395 (58%), Gaps = 11/395 (2%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSN 57
+ F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R
Sbjct: 4 CRTYGFNTQIVHAGQQPDPS-TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLG 62
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQ 116
NPT LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + +
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSH 122
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
PK G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q L
Sbjct: 123 SMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GAL 181
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNS 235
LV+DNTF++ Y Q+ L G DIV++S+TKY+NGH DV+ G V + + QAR L++
Sbjct: 182 LVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI 241
Query: 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295
G SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL
Sbjct: 242 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL 301
Query: 296 AKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355
+ Q S G++SF + GG E R + S+ + A SLG E+L PA MTH + E
Sbjct: 302 GQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPE 361
Query: 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
R GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 362 ERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 520 bits (1341), Expect = 0.0
Identities = 144/329 (43%), Positives = 202/329 (61%), Gaps = 3/329 (0%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE A+ +SG+GA+ A V L AGDH+IS D +YG T+ F K G
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDF+D+ N+ K++KPNT++V+ E P NP + V D++ ++ DIL+++DNT
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNT 122
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVPS 241
F + L GVDIV++S TKY+NGH+DVV G + D + + + + +++ G + S
Sbjct: 123 FASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS 182
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D WL+TRG TL R+K + +VA+FL H VK V +PGLP HP HE+AK Q
Sbjct: 183 PHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK 242
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
M++F V+G E+ + L++ + A SLGG ESL PA MTH +PKE R+A G
Sbjct: 243 MFGSMIAFDVDGL-EKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+TDNL+RLSVG E D+I DL QAL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQALDLV 330
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 510 bits (1317), Expect = 0.0
Identities = 117/396 (29%), Positives = 205/396 (51%), Gaps = 15/396 (3%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRS 56
LP + AT V G + + L++ + + + YSR
Sbjct: 21 LPDGVSQATVGVRGGMLRSGFEE--TAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRY 78
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFA 115
NPT E + +E A +SG+ AV LL AGD +++ ++G + +
Sbjct: 79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS 138
Query: 116 QVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDI 175
++ P+ G++ FVD + + + T+ V+ E P+NP+ ++ D+ A++ +
Sbjct: 139 EILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA-GA 197
Query: 176 LLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
+VLDN F T Q+ P GVD+V+YS TK+++G V+ GA + + + + ++ L
Sbjct: 198 KVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH 257
Query: 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295
G S F+ W++ +GL+TL R++ + +A+FL HP V+ V +P LPSHP ++L
Sbjct: 258 TGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDL 317
Query: 296 AKSQWSGTSGMLSFYVNGGAEETR----IFLESLLIFRCAESLGGIESLADLPAEMTHKS 351
AK Q SG +++F ++ + + L+ + + + +LG +SL PA TH++
Sbjct: 318 AKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRA 377
Query: 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
+ E R A+G+ D +VR+SVG+E DLIAD+D+AL
Sbjct: 378 MGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate,
gamma-elimination, direct sulfhydrylation, CY
metabolism, protein thiocarboxylate, TR; 2.20A
{Wolinella succinogenes}
Length = 430
Score = 315 bits (810), Expect = e-105
Identities = 122/419 (29%), Positives = 202/419 (48%), Gaps = 39/419 (9%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFK-QNTP------GQPPQGFEY 53
+ F F T+A+H+ + P+ + F+ +N+ G Y
Sbjct: 18 LYFQGHMRGFTTRALHVPKAKRD-VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVY 76
Query: 54 SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYR 112
SRS+NPT +LE+ + +L A L SG+ A++ A+ L AGD +++ D ++G T
Sbjct: 77 SRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLS 136
Query: 113 YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172
F + P G+EV FVD+ + TK++++E +NP + V D++A+S VV
Sbjct: 137 LFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK 196
Query: 173 PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-------- 224
I LV+D T Y ++ GVDI + S TK+++G V G + D
Sbjct: 197 -GIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLI---DHGLFEWKSL 252
Query: 225 ----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268
+AR + QN +G SP + +L + GL+T+ R++ + + E
Sbjct: 253 PSLAPYYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQE 311
Query: 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328
+A +L S P VK V HP LP P + +AK Q+ +L+F + E + F+++L +
Sbjct: 312 LAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK-EASYRFMDALKLI 370
Query: 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
R A ++ +SL P + + E R L I+ ++RLSVG+E DL D+ QAL
Sbjct: 371 RRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: LLP; 2.0A {Thermus
thermophilus}
Length = 412
Score = 307 bits (789), Expect = e-102
Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 49/419 (11%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP------PQGFEYSRSNNPTRRN 63
+ T AV G D + + PI + T + +G+ Y+R +PT +
Sbjct: 3 YTTLAVLAGLPEDPHGAVGL--PIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKA 60
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE + +LE A + +SG A A+ LL GD +++ ++G T F QV +G
Sbjct: 61 LEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMG 120
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+ V +VD + E + + + T+ V++E NP + V D++A++ + ++ + LV+DNT
Sbjct: 121 VTVRYVD-PEPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA-GVALVVDNT 178
Query: 183 FL-TAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS----------------- 224
F + L WG +V+ SLTK+ +GH V+ GA +
Sbjct: 179 FGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVL---SRETELWRNYPQFLQPDLK 235
Query: 225 --------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270
+ R L G+ SPF+ +L+ +GL+T+ R+ + +A
Sbjct: 236 GQIPWEALRARCFPERVRTLGLSL-CGMALSPFNAYLLFQGLETVALRVARMSETARFLA 294
Query: 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRC 330
+ L+ HP VK + +PGLP P H A+ + +L+ + G E FL ++ + +
Sbjct: 295 ERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLKA 353
Query: 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
A +LG +L P TH + +E R G+T LVR+SVG+E DL+A ++AL
Sbjct: 354 A-NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 297 bits (762), Expect = 6e-98
Identities = 126/421 (29%), Positives = 205/421 (48%), Gaps = 46/421 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFK-QNTP------GQPPQGFEYSRSNNPTRR 62
F T +H G EP+ + PI +T++ ++ G YSR NPT
Sbjct: 3 FETLQLHAGYEPEP-TTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVD 61
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+LE K L +SG A A+T L AGD+I+S ++YGGT+ F ++
Sbjct: 62 VLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL 121
Query: 122 GLEVDFVDLR-KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV F + E + T+ W+E+ NP + + D++A++ ++ + L++D
Sbjct: 122 GIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK-GVALIVD 180
Query: 181 NTFLT-AYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------TNDD 223
NTF Y + L WG +V +SLTK++ GH V+ GA V
Sbjct: 181 NTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQP 240
Query: 224 S----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
++AR+ L++ G PF+ W+V G++TL R + H ++
Sbjct: 241 GYHGLRLTEAFGELAFIVKARVDGLRD-QGQALGPFEAWVVLLGMETLSLRAERHVENTL 299
Query: 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS-GTSGMLSFYVNGGAEETRIFLESLL 326
+A +L P V V +PGLP HP+H+ A+ + +L+F + GG E + F+ L
Sbjct: 300 HLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLK 359
Query: 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386
+ ++G +LA PA TH + E + G++ +VRLSVG+E DL A+L +A
Sbjct: 360 LISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEA 419
Query: 387 L 387
L
Sbjct: 420 L 420
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 266 bits (682), Expect = 8e-86
Identities = 57/302 (18%), Positives = 104/302 (34%), Gaps = 37/302 (12%)
Query: 38 TFKQNTPGQPP----QGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH 92
+F ++ G+ Y T + + E SG A+ TA+
Sbjct: 43 SFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFG 102
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVA----------PKIGLEVDFVDLRK-----IENLI 137
+L GD ++ + G Y ++ + + + V L + E +
Sbjct: 103 ILRPGDELLY---ITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVA 159
Query: 138 KYIKPNTKMVWIENP----TNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTA-YYQKS 191
I NTKM+ I+ T P T+ +K + A VK+ PD+++ +DN + Q+
Sbjct: 160 AAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP 219
Query: 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
G D++ SL K G G V + + S G+ +
Sbjct: 220 CHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAYRLTSPGIGAEAGASLYSLQE 278
Query: 252 LKTL----PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
+ P + +G+I A FLE + P + + Q+ M+
Sbjct: 279 MYQGFFLAPHVAGQALKGAIFTAAFLEK---LGMNTSPAWNAPRTDLIQSVQFDDKDRMI 335
Query: 308 SF 309
+F
Sbjct: 336 AF 337
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 237 bits (607), Expect = 8e-75
Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 52/319 (16%)
Query: 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA 86
Q + ++ + Y+ + + I + E A + +G A
Sbjct: 46 QLKVLKAFQEERISESHFTNSSG-YGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHA 104
Query: 87 V-TAVTHLLSAGDHIIS--------GDDVYGGTYRYFAQVAPKIGLEVDFVDLRK----I 133
+ A+ L D ++S D+ G + G++ VDL+ I
Sbjct: 105 IGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDI 164
Query: 134 ENLIKYIKPN--TKMVWIENPTN----PLMTVFDVKAISAVVKQH-PDILLVLDNTFLTA 186
+ + +K + K++ I+ T + + ++ I +++ ++++ +DN +
Sbjct: 165 NTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEF 224
Query: 187 YYQKS-LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GVVPSPF 243
+K G DI+ SL K + G G ++ + + G S F
Sbjct: 225 VEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTF 284
Query: 244 DCW-------LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
+ + + +E+A G P +
Sbjct: 285 GVMRSLYEGLFMAPHVTIEAVKGAVFCARIMELA---------------GFDVLPKYNDK 329
Query: 297 KSQ------WSGTSGMLSF 309
++ ++ ++ F
Sbjct: 330 RTDIIQAIKFNDEKKLIDF 348
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 213 bits (545), Expect = 1e-65
Identities = 51/277 (18%), Positives = 98/277 (35%), Gaps = 36/277 (12%)
Query: 48 PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISG--- 103
G+ Y + + + + E A + +G A+ A+ L G+ ++S
Sbjct: 65 SSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGE 124
Query: 104 -----DDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPT 153
DV G T + G+ VDL++ +E + K +K + + +
Sbjct: 125 PYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184
Query: 154 N------PLMTVFDVKAISAVVK-QHPDILLVLDNTFLTAYY-QKSLPWGVDIVLYSLTK 205
+ + + D+K+I VK DI+ +DN + ++ G D++ SL K
Sbjct: 185 STGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIK 244
Query: 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR----GLKTLPCRLKE 261
+ G G D + + G+ + V R GL P E
Sbjct: 245 NIGGGIAPTGGYLAGTKD-CIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISME 303
Query: 262 HERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298
+G+I ++ +E G P ++ +S
Sbjct: 304 ALKGAILCSRIMELA---------GFEVMPKYDEKRS 331
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 206 bits (526), Expect = 2e-63
Identities = 40/338 (11%), Positives = 98/338 (28%), Gaps = 35/338 (10%)
Query: 53 YSRSNNPTR-----RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY 107
+ + +E + ++ A+ A L I ++
Sbjct: 50 LNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELP 109
Query: 108 GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTN-PLMTVFDVKAIS 166
G + + + + K+ ++ I +T ++ + + ++ + + K +
Sbjct: 110 GHPSIERS----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVI 165
Query: 167 AVVKQHPDILLVLDNTFLTAYY-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTN 221
K + ++ +D+ +L G D+V+ S K M G G +
Sbjct: 166 NTAKNK-EAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP----RGGLLAG 220
Query: 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL-PCRLKEHERGSIEVA----KFLESH 276
L ++ G+ P + R LK R+++ + + L
Sbjct: 221 KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKE 280
Query: 277 P-CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAES-- 333
+ ++ P + K + + E L++ I +
Sbjct: 281 LKAIDDNINIVYERTPTGFVIKRV----YKDDTINIKKLIEIGFNLLKNYGIITITVAGM 336
Query: 334 LGGIESLADLPAEMTHKSI-PKETRDALGITDNLVRLS 370
G +SL + I A I +++
Sbjct: 337 PGASKSLRIDLTSRDAERIDDNYIIKA--IVESIKMAF 372
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 207 bits (528), Expect = 3e-63
Identities = 48/271 (17%), Positives = 89/271 (32%), Gaps = 33/271 (12%)
Query: 47 PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIIS--- 102
P G+ Y T + + E A SG A+ T + +L D ++
Sbjct: 50 PSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITG 109
Query: 103 -----GDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENP 152
+++ G + + V L + + K + P TKM+ I+
Sbjct: 110 QPYDTLEEIVGIRKQGQ-GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRS 168
Query: 153 ----TNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLT-AYYQKSLPWGVDIVLYSLTKY 206
P T+ +K + VK P++++ +DN + YQ+ G DI+ SL K
Sbjct: 169 RGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKN 228
Query: 207 MNGHSDVVMGATVTNDD-SLQARLKFLQNSMGVV--PSPFDCWLVTRGLKTLPCRLKEHE 263
G G + + +G S + + +G P +
Sbjct: 229 PGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAI 288
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHE 294
+G+ A L G+ + P +
Sbjct: 289 KGARFTAAMLAEF---------GVEADPVWD 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 3e-12
Identities = 61/412 (14%), Positives = 126/412 (30%), Gaps = 108/412 (26%)
Query: 22 DQWRSQCVIPPIILSTTFKQNTPGQ-PPQGF-EYSRSNNPTRRNLERCIASLEEAK---- 75
+++ P ++ +Q Q F +Y+ S L + + L AK
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 76 HGLCYSSGLG-AVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134
G+ G G A+ LS ++ + L ++
Sbjct: 156 DGV---LGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNC------NSPETVLEMLQ 203
Query: 135 NLIKYIKPNTKMVWIENPTNPLMTVFDVK-AISAVV--KQHPDILLVLDN---------- 181
L+ I PN ++ +N + + ++ + ++ K + + LLVL N
Sbjct: 204 KLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 182 -----TFLTAYYQKSLPWGVDIVLYSLTKY--MNGHSDVVMGATVTNDDSLQARLKFLQN 234
LT + K + D + + T + ++ HS T+T D+ LK+L
Sbjct: 263 NLSCKILLTTRF-KQV---TDFLSAATTTHISLDHHSM-----TLTPDEVKSLLLKYLDC 313
Query: 235 SMGVVP------SPFDCWLVTRGLKTLPCRLKEHERGSIE-VAKFLESHPCVKGVLHPGL 287
+P +P ++ ++ + + + + +ES + VL P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLN-VLEP-- 368
Query: 288 PSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEM 347
E R + L +F S A +P +
Sbjct: 369 ----------------------------AEYRKMFDRLSVFP--PS-------AHIPTIL 391
Query: 348 T----HKSIPKETRDALGITDNLVRLSV---GVEGYTDLIADLDQALRKACK 392
I + + + L + S+ + T I + L+ +
Sbjct: 392 LSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Score = 44.1 bits (103), Expect = 7e-05
Identities = 67/351 (19%), Positives = 111/351 (31%), Gaps = 85/351 (24%)
Query: 98 DHIISGDDVYGGTYRYFAQVAPKIGLEV--DFVD--LRK----IENLIK--YIKPNTKMV 147
DHII D GT R F + K E+ FV+ LR + + IK +P+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 148 WIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-KSLPWGVDIVLYSLTKY 206
+ L V A V + P L L A + + +++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQP--YLKLRQ----ALLELRPAKN---VLIDG---- 157
Query: 207 MNGHSDVVMGATVTNDDSLQARLKF----LQNSMGVVPSP-------------FDCWLVT 249
+ G + V +Q ++ F L ++ SP D +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVL------HPGLPSHPNHE---LAKSQW 300
R + +L+ H E+ + L+S P +L + + N L +++
Sbjct: 216 RSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 301 SGTSGMLSFYVNGGAEETRIFL----------ESLLIFRCAESLGGIESLADLPAEMTHK 350
+ LS A T I L E + + L DLP E+
Sbjct: 275 KQVTDFLS-----AATTTHISLDHHSMTLTPDEVKSLL--LKYLD--CRPQDLPREVLTT 325
Query: 351 S------IPKETRDALGITDNLVRLSVGVEGYTDLI----ADLDQALRKAC 391
+ I + RD L DN V + T +I L+ A +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Score = 29.1 bits (64), Expect = 3.0
Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 59/241 (24%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQ-----WR-SQCVIPPIILSTTFKQNTPGQPPQGFEYS 54
+S P HI P W ++++ K + + P+ S
Sbjct: 378 LSVFPPS-------AHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 55 --------RSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-----THLLSAGDHII 101
+ L R I ++ + S + +H+ G H+
Sbjct: 428 IPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLK 482
Query: 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161
+ + + F + F+D R +E I++ W + L T+
Sbjct: 483 NIE--HPERMTLF----RMV-----FLDFRFLEQKIRHDSTA----W-NASGSILNTLQQ 526
Query: 162 VKAISA-VVKQHPDILLVLDN--TFLTAYYQKSL--PWGVDIVLYSLTKYMNGHSDVVMG 216
+K + P +++ FL + + + D++ +L M +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRIAL---MAEDEAIFEE 582
Query: 217 A 217
A
Sbjct: 583 A 583
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 61.0 bits (149), Expect = 1e-10
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
++ + EV F E++ + N W+ NP NP + I ++
Sbjct: 98 SFAEYEDACRMYEHEVCFYPSN--EDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLL 155
Query: 170 KQHPDILLVLDNTFL--TAYYQKSLPWGVD----IVLYSLTK 205
HPD VLD +++ T +++YS +
Sbjct: 156 NDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSH 197
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 57.9 bits (141), Expect = 1e-09
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 111 YRYFAQVAPKIGLEVDFVDLRKIEN------LIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
Y + G E+ LR+ + +++ + P+ +++ P NP + +
Sbjct: 111 YGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPL 167
Query: 165 ISAVVKQHP--DILLVLDNTFL--TAYYQKSLPWGVD----IVLYSLTK 205
+ A+ + +I L+LD F+ + +P D VL SLTK
Sbjct: 168 LQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTK 216
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 56.8 bits (138), Expect = 4e-09
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 93 LLSAGDHIISGDDVYG-GTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKM 146
LL + + YR A + G EV + L + +E ++ I T +
Sbjct: 104 LLDTTTNTVMAT--PTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTI 158
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
VWI NP NP ++ I A + + P D+L+VLD AY
Sbjct: 159 VWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLD----EAYI 197
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 55.3 bits (134), Expect = 1e-08
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 93 LLSAGDHIISGDDVYG-GTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKM 146
L++ + + Y +A+ G + + L + K K+
Sbjct: 102 KLNSKNAFLQAG--VTFAMYEIYAKQC---GAKCYKTQSITHNLDEFKKLYETHKDEIKL 156
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
+++ P NPL D + +K D L+V+D AY
Sbjct: 157 IFLCLPNNPLGECLDASEATEFIKGVNEDCLVVID----AAYN 195
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 54.0 bits (129), Expect = 4e-08
Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 35/212 (16%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRY 113
LER + L KH + G GA ++ L ++G+ + G +
Sbjct: 80 LERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVD 139
Query: 114 -FAQVAPKIGLEVDF---VDLRKIENLIK-YIKPNTKMVWIENPTNPL----MTVFDVKA 164
A GL + F +DL+K++ LI N + + N +++ +++A
Sbjct: 140 IVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRA 199
Query: 165 ISAVVKQHPDILLVLDNT--FLTAYYQKSLPWGV-DIVLYSLTKYMNGHSDVVM------ 215
+ + + H I + D T AY+ K G + + + M ++D
Sbjct: 200 VRELTEAH-GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 216 ------GATVTNDDSLQARLKFLQNSMGVVPS 241
G NDD + + K L +PS
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELVVVYEGMPS 290
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 52.2 bits (126), Expect = 1e-07
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-------IENLIKYIKPNTK 145
L+ GDH+I TY+ + +G EVD + + +E L + I+P TK
Sbjct: 101 LIEPGDHVI----SLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTK 156
Query: 146 MVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
M+ I N NP +M ++ + + + ++ D
Sbjct: 157 MICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSD 193
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 51.7 bits (124), Expect = 2e-07
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 25/122 (20%)
Query: 74 AKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGL 123
+ Y A HLL GD I + ++ +V
Sbjct: 173 GTAAIVY---AFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYE---LVEVDLHSYE 226
Query: 124 EVDFVDLRKI--ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLV 178
+ D+ +I + K P+ K + + NPTNP + AI V+++P ++++
Sbjct: 227 KNDW----EIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMII 282
Query: 179 LD 180
D
Sbjct: 283 SD 284
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 49.8 bits (120), Expect = 6e-07
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
+Y + A K G+ V F L + E++I I + V I NP NP + + +
Sbjct: 107 SYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKID-DVDSVIIGNPNNPNGGLINKEK 165
Query: 165 ISAVVKQ--HPDILLVLDNT---FLTAYYQKSLPWGVD----IVLYSLTK 205
V+K +++D F + + ++ ++TK
Sbjct: 166 FIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTK 215
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 49.9 bits (120), Expect = 7e-07
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNT--K 145
S ++ + YG +FA++A G++V V + IE L + +
Sbjct: 88 YASLEAQLVIPELTYG-DGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPS 143
Query: 146 MVWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
+V++ NP NP T+ I + P + + ++D AY
Sbjct: 144 IVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVD----EAYA 183
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 26/123 (21%)
Query: 74 AKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGL 123
+ Y + + LL AGD + G V+ VA
Sbjct: 174 GTAAMAY---IFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEE---VAINADP 227
Query: 124 EVDFVDLRKI--ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQH-PDILL 177
+++ + L K P K+ + NP+NP M ++ + +V +H PD+++
Sbjct: 228 SLNW----QYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMI 283
Query: 178 VLD 180
+ D
Sbjct: 284 LTD 286
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 46.8 bits (112), Expect = 6e-06
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF--------VDLRK 132
G A+ +VT LL D I+ + G + Q+ + + V V +
Sbjct: 61 GGGTSAMESVTSLLKPNDKILVVSNGVFGDR--WEQIFKRYPVNVKVLRPSPGDYVKPGE 118
Query: 133 IENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLTAY 187
+E ++ K K+V + E T V VK + ++++ L+V+D + + A
Sbjct: 119 VEEEVR--KSEYKLVALTHVETST----GVREPVKDVINKIRKY-VELIVVDGVSSVGAE 171
Query: 188 YQKSLPWGVDIVL 200
K+ W VD+ L
Sbjct: 172 EVKAEEWNVDVYL 184
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 46.9 bits (112), Expect = 6e-06
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
+ + + ++ D ++ G + ++A + G V D
Sbjct: 69 GTSRAGIEAVLASVIEPEDDVLIPI---YGRFGYLLTEIAERYGANVHMLECEWGTVFDP 125
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
I IK K K+V + E T +KAI + D L ++D +
Sbjct: 126 EDIIREIK--KVKPKIVAMVHGETST----GRIHPLKAIGEACRTE-DALFIVDAVATIG 178
Query: 186 AYYQKSLPWGVDIVL 200
K W +D +
Sbjct: 179 GCEVKVDEWKIDAAI 193
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 46.5 bits (111), Expect = 8e-06
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 20/106 (18%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137
AV L+ G ++ + D Y G V G +D LR+
Sbjct: 101 AAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRR----- 155
Query: 138 KYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+ P T+ + I +P NP V ++ AI+ + +++++ D
Sbjct: 156 -AVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITD 199
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 46.5 bits (111), Expect = 9e-06
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 20/132 (15%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY--RYFAQVAPKIGLEVDFVDLR-----K 132
S G++ V + + D ++ D GG++ R F Q+ + + L
Sbjct: 78 CSSTGSMEAVVMNCFTKKDKVLVID---GGSFGHR-FVQLCEIHEIPYVALKLEHGKKLT 133
Query: 133 IENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLTAYY 188
E L +Y N + + E T ++D I K++ ++ V D + A
Sbjct: 134 KEKLYEYDNQNFTGLLVNVDETSTA---VLYDTMMIGEFCKKN-NMFFVCDCVSAFLADP 189
Query: 189 QKSLPWGVDIVL 200
G D+++
Sbjct: 190 FNMNECGADVMI 201
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 46.1 bits (110), Expect = 1e-05
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
+ + A L+S D +++ VYG F A + + +D
Sbjct: 66 GEPVLGLEAAAASLISPDDVVLNLASGVYGK---GFGYWAKRYSPHLLEIEVPYNEAIDP 122
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLTA 186
+ + +++K P +V + + P+ T+ + AI A+V H L++D +
Sbjct: 123 QAVADMLKA-HPEITVVSVCHHDTPSG---TINPIDAIGALVSAH-GAYLIVDAVSSFGG 177
Query: 187 YYQKSLPWGVDIVL 200
DI +
Sbjct: 178 MKTHPEDCKADIYV 191
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 46.1 bits (110), Expect = 1e-05
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
+ + + + GD ++ G + ++A + EV
Sbjct: 71 GTSRAGIEAILVSAIRPGDKVLVPV---FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTP 127
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
++E+ +K I+P +++ + T T+ + + + +++ D L D L
Sbjct: 128 DQVEDAVKRIRP--RLLLTVQGDTST----TMLQPLAELGEICRRY-DALFYTDATASLG 180
Query: 186 AYYQKSLPWGVDIVL 200
++ WG+D V
Sbjct: 181 GNPLETDVWGLDAVS 195
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 46.1 bits (110), Expect = 1e-05
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SG A+ TA+ +LL GD ++G + ++G A++A +IG V L
Sbjct: 81 GSGHCAMETALFNLLEPGDSFLTGTNGIWGM---RAAEIADRIGARVHQMIKKPGEHYTL 137
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+++E + KP ++++ E+ T V + + ++ LL++D+ L
Sbjct: 138 QEVEEGLAQHKP--VLLFLVHGESST----GVVQPLDGFGELCHRY-QCLLLVDSVASLG 190
Query: 186 AYYQKSLPWGVDIVL 200
G+DI+
Sbjct: 191 GVPIYMDQQGIDIMY 205
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 45.7 bits (109), Expect = 1e-05
Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
S + +++LL GD ++ G + +++ + G +V L
Sbjct: 76 GSAHAGMEAMLSNLLEEGDRVLIAV---NGIWAERAVEMSERYGADVRTIEGPPDRPFSL 132
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+ I+ K +++ ++ + + ++ + + QH D LL++D L
Sbjct: 133 ETLARAIE--LHQPKCLFLTHGDSSS----GLLQPLEGVGQICHQH-DCLLIVDAVASLC 185
Query: 186 AYYQKSLPWGVDIVL 200
W +D V
Sbjct: 186 GVPFYMDKWEIDAVY 200
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 45.6 bits (109), Expect = 1e-05
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIEN 151
++ D + Y YR FA+ G + V L K + + +V+I N
Sbjct: 91 VMMLMFDRSVFFPPTYS-CYRIFAKAV---GAKFLEVPLTKDLRIPEVNVGEGDVVFIPN 146
Query: 152 PTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
P NP VF+ + I ++K + LD AYY
Sbjct: 147 PNNPTGHVFEREEIERILKT--GAFVALDE----AYY 177
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 45.7 bits (109), Expect = 1e-05
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDFVDL--RKIENL 136
SG A+ V +L + G+ ++ + R F ++A + GL V+ +D
Sbjct: 58 GSGTLAMEALVKNLFAPGERVLVPVYGKFSE--R-FYEIALEAGLVVERLDYPYGDTPRP 114
Query: 137 IKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQH-PDILLVLDN-TFLTAYYQKS 191
K + + E T + D+ A++ K+ P+ L+ D T L
Sbjct: 115 EDVAKEGYAGLLLVHSETSTG---ALADLPALARAFKEKNPEGLVGADMVTSLLVGEVAL 171
Query: 192 LPWGVDIVL 200
GVD
Sbjct: 172 EAMGVDAAA 180
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 45.7 bits (109), Expect = 2e-05
Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
+G A+ + + + GD ++ G G + +A + G +V L
Sbjct: 92 GTGTAAMEATIANAVEPGDVVLIGV---AGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 148
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
++ ++ +P ++ + E T ++ + + ++ LL++D T L
Sbjct: 149 EELRTALETHRP--AILALVHAETST----GARQPLEGVGELCREF-GTLLLVDTVTSLG 201
Query: 186 AYYQKSLPWGVDIVL 200
WGVD+
Sbjct: 202 GVPIFLDAWGVDLAY 216
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 45.6 bits (109), Expect = 2e-05
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
+NL +I TK + + NP NP + +++ + + ++H + L++D
Sbjct: 165 QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVD 213
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 45.1 bits (107), Expect = 2e-05
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLV 178
G VD +ENL + + PTNP ++T ++ ++ + K++ DI L+
Sbjct: 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLI 243
Query: 179 LDN 181
+DN
Sbjct: 244 IDN 246
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 44.9 bits (107), Expect = 3e-05
Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SSG G + ++ + +S G ++ +G + +V G + V
Sbjct: 78 SSGTGIMEASIRNGVSKGGKVLVTIIGAFGK---RYKEVVESNGRKAVVLEYEPGKAVKP 134
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+++ ++ + V I E T V + ++ V K+H D L+ +D + +
Sbjct: 135 EDLDDALRKNPD-VEAVTITYNETST----GVLNPLPELAKVAKEH-DKLVFVDAVSAMG 188
Query: 186 AYYQKSLPWGVDIVL 200
K WG+D+V
Sbjct: 189 GADIKFDKWGLDVVF 203
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 44.5 bits (106), Expect = 4e-05
Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 33/191 (17%)
Query: 62 RNLERCIASLEEAKHGLCYSSG----LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQV 117
+ E A +K+ + SSG L + A+ + GD++ +
Sbjct: 37 KQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPR--LKKGDEIIVPAVSWSTTY 94
Query: 118 APKI--GLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
P GL V FVD+ IE+L + + +TK + N L + I+ ++
Sbjct: 95 YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAIL---TVNLLGNPNNFDEINKII 151
Query: 170 KQHPDILLVLDN--TFLTAYYQKSL-PWGVDIVLYSL--TKYM---NGHSDVVMGATVTN 221
DI+L+ DN + + K +G + +S + ++ G G VT+
Sbjct: 152 GGR-DIILLEDNCESMGATFNNKCAGTFG-LMGTFSSFYSNHIATMEG------GCIVTD 203
Query: 222 DDSLQARLKFL 232
D+ + L +
Sbjct: 204 DEEIYHILLCI 214
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 44.3 bits (105), Expect = 5e-05
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 31/126 (24%)
Query: 74 AKHGLCYSSGLGAVTAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGL 123
A G+ + + LL+AGD +I + D Y GG Y PK
Sbjct: 127 ANEGIL--------SCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELD 178
Query: 124 -----EVDF-VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPD 174
++ +D + E I TK V I P NP+ VF ++ + + +H +
Sbjct: 179 QRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-N 234
Query: 175 ILLVLD 180
++++ D
Sbjct: 235 VVIISD 240
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 43.7 bits (104), Expect = 5e-05
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137
+ L+ GD ++ + DVY G R G +D L K
Sbjct: 93 VLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEK----- 147
Query: 138 KYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+ P T+ + + P NP VF +++AI+ + + H D+ L+ D
Sbjct: 148 -ALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISD 191
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 43.5 bits (103), Expect = 8e-05
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNP---LMTV 159
+ ++ G + + DL + + + NP NP MT
Sbjct: 145 LNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTD 201
Query: 160 FDVKAISAVVKQHPDILLVLD 180
+++ I + +H D++++ D
Sbjct: 202 EELRIIGELATKH-DVIVIED 221
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 43.2 bits (101), Expect = 9e-05
Identities = 46/370 (12%), Positives = 104/370 (28%), Gaps = 69/370 (18%)
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGD-DVYGGTYRYFA 115
+ +L+ L + + G GA LL V+ + +
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT 134
Query: 116 QVAPKIGLEVDFV--------------------DLRKIENLIK-YIKPNTKMVWIENPTN 154
A + D++K++ I + N + N
Sbjct: 135 TAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 194
Query: 155 PL----MTVFDVKAISAVVKQHPDILLVLDNT--FLTAYYQKSLPWG------------- 195
+++ ++K + + KQH I +V+D+ AY+ K+
Sbjct: 195 SAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253
Query: 196 ---VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL 252
D + S K + ++ + +++ + + M + L R +
Sbjct: 254 YKYADALTMSAKK--DPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGG--LAGRDM 309
Query: 253 KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312
+ L+E ++L L L +G + +V+
Sbjct: 310 AAMVQGLEEGTE-----EEYLHYRIGQVKYLGDRLREAGIPIQYP------TGGHAVFVD 358
Query: 313 GGAEETRI----FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
+I F +I G+ ++ + T + +R
Sbjct: 359 CKKLVPQIPGDQFPAQAVINALYLE-SGVRAVEIGSFLL---GRDPATGEQKHADMEFMR 414
Query: 369 LSVGVEGYTD 378
L++ YT+
Sbjct: 415 LTIARRVYTN 424
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 43.1 bits (102), Expect = 1e-04
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLR-KIENL 136
+ + GD +I + D Y GG R+ K G + D L
Sbjct: 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNEL 175
Query: 137 IKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
TKM+ I P NPL V +++ ++ + K+ ++L V D
Sbjct: 176 EALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSD 221
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 42.6 bits (101), Expect = 1e-04
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 88 TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDLRKIENLIK 138
+ +LL GD I+ G G + A +A + G +V + L +I + +
Sbjct: 85 ATLCNLLEDGDVILIGH---TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALL 141
Query: 139 YIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLTAYYQKSLP 193
KP ++++ ++ T V ++ + A+ QH + LL++D L
Sbjct: 142 IHKP--SVLFLTQGDSST----GVLQGLEGVGALCHQH-NCLLIVDTVASLGGAPMFMDR 194
Query: 194 WGVDIVL 200
W +D +
Sbjct: 195 WEIDAMY 201
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 42.2 bits (100), Expect = 2e-04
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137
A+T L+ GD +I D D Y GG + A P VD+ +
Sbjct: 106 AAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP--HFRVDWQEFAA----- 158
Query: 138 KYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+ T++V + P NP TV+ D A+ + H +I ++ D
Sbjct: 159 -LLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISD 202
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAP----KIGLEVDF-VDLRKIENLIKYIKPNTKMV 147
G +++ + Y AQ A + L DF +D + + + +V
Sbjct: 105 AARPGAKVMAPVPGFV-MYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMA--EHQPAIV 161
Query: 148 WIENPTNPLMTVFDVKAISAVVKQHP----DILLVLD 180
++ P NP +FD + A+V+ L+V+D
Sbjct: 162 YLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVD 198
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 42.1 bits (100), Expect = 2e-04
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
+ L KY+ T+ + I +P NP ++T D++ I+ V +H D++++ D
Sbjct: 151 DELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISD 199
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 41.3 bits (98), Expect = 3e-04
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENP 152
++ GD ++ + Y Y+ F + G + F D +E+L + + TK + I +P
Sbjct: 109 IIDDGDEVLIQNPCYP-CYKNFIRFL---GAKPVFCDFT-VESLEEALSDKTKAIIINSP 163
Query: 153 TNPLMTVFDVKAISAVVKQHPDILLVLD 180
+NPL V D + I ++ ++ D
Sbjct: 164 SNPLGEVID-REIYEFAYEN-IPYIISD 189
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 41.4 bits (98), Expect = 4e-04
Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 44/188 (23%)
Query: 84 LGAVTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIE 134
+G+ + HLL A D ++ + Y +Y A+VA L + LR ++
Sbjct: 94 IGSQEGLAHLLLALTEPEDLLLLPEVAYP-SYFGAARVA---SLRTFLIPLREDGLADLK 149
Query: 135 NLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAY---- 187
+ + + K++ + P NP + + + ++H + L+ DN Y
Sbjct: 150 AVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLIHDN----PYVDQV 204
Query: 188 ---YQKSLP-----WGVDIVLYSLTKYMNGHSDVVM-----GATVTNDDSLQARLKFLQN 234
S + L+SL+K N + G + ++++L +
Sbjct: 205 YEGEAPSPLALPGAKERVVELFSLSKSYN------LAGFRLGFALGSEEALARLERVKGV 258
Query: 235 SMGVVPSP 242
+
Sbjct: 259 IDFNQYAG 266
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 41.1 bits (97), Expect = 4e-04
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRY-----FAQVAPKIGLEVDF-VDLR 131
TA L+ GD +I + D Y GG + ++G ++ +D
Sbjct: 106 TAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPM 165
Query: 132 KIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
++ TK + + P NPL VF +++ ++++ +QH D++ + D
Sbjct: 166 ELA---GKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITD 213
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 41.0 bits (97), Expect = 5e-04
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIK-PNTKM 146
G + Y + A+ E V ++ ++ I+ +
Sbjct: 112 FGGPGRTALGFQPSYS-MHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDI 167
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
V++ P NP V + + ++ P ++++D
Sbjct: 168 VFVTTPNNPTGDVTSLDDVERIINVAPG-IVIVD 200
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRY----FAQVAPKIGLEVDF-VDLRK 132
++ L+ GD +I D Y G + D+ D R+
Sbjct: 100 NSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159
Query: 133 IENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+E TK + + P NPL V+ +++ I+ + +H D L + D
Sbjct: 160 LE---SKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKH-DTLCISD 206
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 40.6 bits (96), Expect = 5e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 111 YRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165
Y A+ G+E V ++ + + K+V++ +P NP + + +
Sbjct: 113 YSVSAETI---GVECRTVPTLDNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDF 168
Query: 166 SAVVKQHP-DILLVLD 180
+++ ++V D
Sbjct: 169 RTLLELTRGKAIVVAD 184
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 40.6 bits (96), Expect = 5e-04
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-IENLIKYIKPNTKMVWIEN 151
+ G+ I Y Y A+V G V L + K+ ++
Sbjct: 102 FAAEGEEIGYVHPSYS-YYGTLAEVQ---GARVRTFGLTGDFRIAGFPERYEGKVFFLTT 157
Query: 152 PTNPLMTVFDVKAISAVVKQHPDILLVLD 180
P PL F ++ I + ++ + LVLD
Sbjct: 158 PNAPLGPSFPLEYIDELARRCAGM-LVLD 185
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 40.6 bits (96), Expect = 6e-04
Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 37/185 (20%)
Query: 84 LGAVTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK------I 133
G + + + GD+++ D Y Y +A + ++L
Sbjct: 116 YGTKNGLVAVPTCVINPGDYVLLPDPGYT-DYLAGVLLA---DGKPVPLNLEPPHYLPDW 171
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK 190
+ I TK++++ P NP T A K D +V D + +
Sbjct: 172 SKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA 230
Query: 191 ------SLP--WGVDIVLYSLTKYMNGHSDVVM-----GATVTNDDSLQARLKFLQNSMG 237
+ V I +YSL+K N M G V N D +QA K+ ++
Sbjct: 231 KNPSILASENGKDVAIEIYSLSKGYN------MSGFRVGFAVGNKDMIQALKKYQTHTNA 284
Query: 238 VVPSP 242
+
Sbjct: 285 GMFGA 289
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 40.6 bits (96), Expect = 6e-04
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 133 IENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHP-----DILLVLD 180
+ L + I +T+ V I +P NP + + +K +S ++++ I ++ D
Sbjct: 162 FDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIAD 217
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 40.2 bits (95), Expect = 7e-04
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SG AV + L D ++ + YG R ++A +G+ D+
Sbjct: 63 GSGSYAVEAVLGSALGPQDKVLIVSNGAYGA--R-MVEMAGLMGIAHHAYDCGEVARPDV 119
Query: 131 RKIENLIKYIKPNTKMVWI---ENPT---NPLMTVFDVKAISAVVKQHPDILLVLD 180
+ I+ ++ P + + E T NP+ + A+ ++ ++D
Sbjct: 120 QAIDAILNA-DPTISHIAMVHSETTTGMLNPI------DEVGALAHRY-GKTYIVD 167
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 40.2 bits (95), Expect = 7e-04
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 15/105 (14%)
Query: 83 GLGAVTAVTHLLSA--GDHIISGDDVYGGTYRYFAQVA----PKIGLEVDF-VDLRKIEN 135
G + + ++ + YR V+ +IGL D +D +
Sbjct: 74 VRGIDECFDRISAEFSSMRFVTAWPGFD-GYRARIAVSGLRHFEIGLTDDLLLDPNDLA- 131
Query: 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
V + NP+NP + + ++ L++D
Sbjct: 132 ----QVSRDDCVVLANPSNPTGQALSAGELDQLRQRAG--KLLID 170
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 40.3 bits (95), Expect = 8e-04
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 23/118 (19%)
Query: 84 LGAVTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK------- 132
+G+ + HL+ A GD I+ + Y + Y A +A G +V V L
Sbjct: 106 IGSKEGLAHLMLATLDHGDTILVPNPSYP-IHIYGAVIA---GAQVRSVPLVPGIDFFNE 161
Query: 133 IENLIKYIKPNTKMVWIE---NPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
+E I+ P +M+ + NPT + + + + A+ KQ+ D+++V D AY
Sbjct: 162 LERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDL----AY 214
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 40.3 bits (95), Expect = 8e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 108 GGTYRYFAQVAPKI-GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVK 163
G F P I L ++ +I T M+ + PTNP ++T ++
Sbjct: 145 GLEDDLFVSARPNIELLPEGQFKYH-VDFEHLHIGEETGMICVSRPTNPTGNVITDEELM 203
Query: 164 AISAVVKQHPDILLVLDN 181
+ + QH +I LV+DN
Sbjct: 204 KLDRLANQH-NIPLVIDN 220
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 40.0 bits (93), Expect = 0.001
Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 35/190 (18%)
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDD--------VYGG 109
+ L + ++ ++ + G GA + L+ + D +
Sbjct: 74 RSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 110 TYRYFAQV------------APKIGLEVDF---VDLRKIENLIK-YIKPNTKMVWIENPT 153
T + +Q+ A G+ DF DL +E I+ N + +
Sbjct: 134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITS 193
Query: 154 N-----PLMTVFDVKAISAVVKQHPDILLVLDNT--FLTAYYQKSLPWGV-DIVLYSLTK 205
N P+ ++ ++KA+ ++ K++ DI +V+D+ AY+ K D + +T+
Sbjct: 194 NSAGGQPV-SLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITR 251
Query: 206 YMNGHSDVVM 215
++D++
Sbjct: 252 ETYKYADMLA 261
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 39.8 bits (94), Expect = 0.001
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
E + + TK V I +P NP + ++ + + K+ + ++ D
Sbjct: 165 EEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISD 213
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 39.6 bits (92), Expect = 0.001
Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 25/169 (14%)
Query: 51 FEYSRSNNPTRRNLERCIASLEEAKHGLCYSS-----GLGAV----TAVTHLLSAGDHII 101
+ + LE I L G G+ AV L S
Sbjct: 60 SDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQP 119
Query: 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161
Y + + + + + + + K + + +P NP T+
Sbjct: 120 VSVVAAAPFYSTYVEETTYVRSGMYKWEG----DAWGFDKKGPYIELVTSPNNPDGTI-- 173
Query: 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSL-----PWGVDIVLYSLTK 205
+ + + ++ D AYY DI+L++ +K
Sbjct: 174 RETVVNRPDDD-EAKVIHDF----AYYWPHYTPITRRQDHDIMLFTFSK 217
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 39.1 bits (92), Expect = 0.002
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
L + K ++ NP NP + + ++ I+A+ ++ ++ D
Sbjct: 170 TGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY-GATVIAD 218
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 133 IENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
I+++ K I TK + + NP NP L ++ I + ++ +I ++ D
Sbjct: 164 IDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISD 213
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 37.9 bits (89), Expect = 0.005
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
E + + I P TK++ P+NP V+ +V+AI+ V + ++ D
Sbjct: 154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV-EAGLWVLSD 202
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 37.6 bits (88), Expect = 0.005
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 27/135 (20%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SG + + +L ++ + + R A++A GL+ + VD
Sbjct: 59 GSGSLGMEAGLANL--DRGPVLVLVNGAFSQ--R-VAEMAALHGLDPEVLDFPPGEPVDP 113
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+ +K + +MV + E T V +AI A+ K+ L LD T L
Sbjct: 114 EAVARALKRRRY--RMVALVHGETST----GVLNPAEAIGALAKEA-GALFFLDAVTTLG 166
Query: 186 AYYQKSLPWGVDIVL 200
GVD
Sbjct: 167 MLPFSMRAMGVDYAF 181
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 37.6 bits (88), Expect = 0.006
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 107 YGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVK 163
YG ++ P+ E D ++R+ TK++ + NP+NP + V+
Sbjct: 148 YGIGMHFY-NCRPENDWEADLDEIRR------LKDDKTKLLIVTNPSNPCGSNFSRKHVE 200
Query: 164 AISAVVKQHPDILLVLD 180
I + ++ + L D
Sbjct: 201 DIVRLAEEL-RLPLFSD 216
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 37.5 bits (88), Expect = 0.007
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
E + + I P TK + + +P NP V+ ++A++ + +H D LV D
Sbjct: 155 ERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSD 203
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 37.2 bits (86), Expect = 0.008
Identities = 30/219 (13%), Positives = 60/219 (27%), Gaps = 53/219 (24%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSA--------------- 96
++ +N LE+ I L E VT L+
Sbjct: 94 FNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDA 153
Query: 97 -GDHIISGDDVYGGTYRYFAQVAPKIGLEVDF-VDLRKIENLIKYIKPNTKMVWIENPTN 154
+++ Y +R + + + N + P + + +P N
Sbjct: 154 PESKVVAHAPFYP-VFREQTKYFD--KKGYVWAGNA---ANYVNVSNPEQYIEMVTSPNN 207
Query: 155 P---LMTVFDVKAISAVV-------KQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLT 204
P L V + + I D I+L++++
Sbjct: 208 PEGLLRH--AVIKGCKSIYDMVYYWPHYTPIKYKADED---------------ILLFTMS 250
Query: 205 KYMNGHSDVVMG-ATVTNDDSLQARLKFLQNSMGVVPSP 242
K+ GHS G A + ++ L ++ + P
Sbjct: 251 KFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRE 288
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 37.1 bits (87), Expect = 0.009
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 23/130 (17%)
Query: 68 IASLEEAKHGLCYSSGLGAVT---------AVTHLLSAGDHIISGDDVYGGTYRYFAQVA 118
IA L +G+ G +T A T L +GD + G Y +YR +
Sbjct: 77 IARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYP-SYRQILRAL 135
Query: 119 PKIGLEVDFVDLRKIENLIK-----YIKPNTKMVWIENPTNP---LMTVFDVKAISAVVK 170
GL + EN ++ + + + + +P NP ++ + A+ +
Sbjct: 136 ---GLVPVDLPTAP-ENRLQPVPADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQ 191
Query: 171 QHPDILLVLD 180
+ D
Sbjct: 192 AQ-GASFISD 200
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 36.8 bits (86), Expect = 0.009
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 107 YGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD---VK 163
G + + + P+ E+D L + I T + + NP+NP +VF ++
Sbjct: 162 MGIEVKLY-NLLPEKSWEIDLKQLEYL------IDEKTACLIVNNPSNPCGSVFSKRHLQ 214
Query: 164 AISAVVKQHPDILLVLD 180
I AV + + ++ D
Sbjct: 215 KILAVAARQ-CVPILAD 230
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 36.4 bits (85), Expect = 0.012
Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 52/200 (26%)
Query: 64 LERCIASLE--EAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFA--QVA 118
E+ I S ++ + A + G ++ + A A
Sbjct: 41 FEQTIMSGFFQNRGAVTTVANATLGLMAA---IQLKK--RKKGKYALMPSFTFPATPLAA 95
Query: 119 PKIGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVK 163
GLE F+D + + I+ +K +V + +++
Sbjct: 96 IWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIV---------VPYATFGSWMNLE 146
Query: 164 AISAVVKQHPDILLVLDN--TFLTAYYQKSL--PWGVDIVLYSL--TKYMN---GHSDVV 214
+ K + +V+D F + +++YS TK G
Sbjct: 147 EYEELEK-K-GVPVVVDAAPGFGLMNGGMHYGQDFS-GMIIYSFHATKPFGIGEG----- 198
Query: 215 MGATVTNDDSLQARLKFLQN 234
G + ++ R+K + N
Sbjct: 199 -GLIYSKNEEDIQRIKRMGN 217
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 36.5 bits (85), Expect = 0.013
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----------KIENLI---KY 139
L GD + Y + + + G+++ + ++ +
Sbjct: 128 LADPGDAFLVPSPYYPA---FNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQK 184
Query: 140 IKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
K + + NP+NPL T +K++ + QH +I LV D
Sbjct: 185 SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCD 227
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 36.1 bits (84), Expect = 0.014
Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 37/206 (17%)
Query: 59 PTRRNLERCIASL---EEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDD--VY----G 108
R I L +A S G + A + L + +I+ + G
Sbjct: 49 SHCAKAARLIGELLERPDADVHFI-SGGTQTNLIACSLALRPWEAVIATQLGHISTHETG 107
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK----PNTKMVWIENPTNP--LMTVFDV 162
+V + + IE+ + + K+V+I N T T ++
Sbjct: 108 AIEATGHKVVTAPC-PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQEL 166
Query: 163 KAISAVVKQHPDILLVLD-----------NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHS 211
+ ISA K+H + L LD LT + D+ TK G
Sbjct: 167 EDISASCKEH-GLYLFLDGARLASALSSPVNDLTL---ADIARLTDMFYIGATK--AG-- 218
Query: 212 DVVMGATVTNDDSLQARLKFLQNSMG 237
+ A + +D+L+ + L G
Sbjct: 219 GMFGEALIILNDALKPNARHLIKQRG 244
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 36.4 bits (85), Expect = 0.015
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 116 QVAPKIGLEVDFVDLRK-------IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168
+A + G+ F + L ++ P T++V + + V + I AV
Sbjct: 120 AIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAV 179
Query: 169 VKQH---PDILLVLD 180
++H + +++D
Sbjct: 180 CRRHQGNYPVRVLVD 194
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 36.1 bits (84), Expect = 0.015
Identities = 36/196 (18%), Positives = 72/196 (36%), Gaps = 49/196 (25%)
Query: 65 ERCIASLEEAKHGLCYSSGLGAVTAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP--K 120
E+ + ++++ L +S TA H L AG + D V ++ + A VAP
Sbjct: 38 EQSVKDYSKSENALALNSA----TAALHLALRVAG--VKQDDIVLASSFTFIASVAPICY 91
Query: 121 IGLEVDFVD--------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVKAIS 166
+ + F+D + ++ IK + K + + + I
Sbjct: 92 LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKAL---------ILTHLYGNAAKMDEIV 142
Query: 167 AVVKQHPDILLVLDNT-FLTAYYQKSLPWGV--DIVLYSL--TKYM---NGHSDVVMGAT 218
+ K++ DI+L+ D L ++Y K+ G + +YS K + G G
Sbjct: 143 EICKEN-DIVLIEDAAEALGSFY-KNKALGTFGEFGVYSYNGNKIITTSGG------GML 194
Query: 219 VTNDDSLQARLKFLQN 234
+ + + +F
Sbjct: 195 IGKNKEKIEKARFYST 210
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 36.1 bits (84), Expect = 0.016
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 25/138 (18%)
Query: 81 SSGLGAV-TAVTHLL---SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF--------- 127
SG ++ + + +++ FA G +VD
Sbjct: 66 GSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPLKIGES 123
Query: 128 VDLRKIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQH-PDILLVLDN-T 182
V L I + V + + T + D+KAIS +KQ P+ V+D
Sbjct: 124 VPLELITEKLSQNSY--GAVTVTHVDTSTA---VLSDLKAISQAIKQTSPETFFVVDAVC 178
Query: 183 FLTAYYQKSLPWGVDIVL 200
+ + WGVD L
Sbjct: 179 SIGCEEFEFDEWGVDFAL 196
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 36.2 bits (84), Expect = 0.017
Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----------KIENLIKYIK- 141
L G+ ++ Y G + + + G+E+ + +E + +
Sbjct: 131 LADPGEAVLIPTPYYPG---FDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187
Query: 142 --PNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD----------NTFLT- 185
K V + NP+NPL T ++ + + V+ I L+ D +F++
Sbjct: 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISV 246
Query: 186 AYYQKSLPWGVDIVLYSLTKYMNGHS-DVVM-----GATVTNDDSLQARLKFLQNSMGVV 239
K + ++ + S D+ + GA +NDD + A + S G+V
Sbjct: 247 MEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGLV 305
Query: 240 PSP 242
S
Sbjct: 306 SSQ 308
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.023
Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 60/203 (29%)
Query: 132 KIENLIKYIKPNTKMVWIENP---------TNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
K E + K I ++ + T P +T+ + A +K L+ D T
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-AAFEDLKSKG--LIPADAT 1758
Query: 183 F----------LTAYYQKSLPW--GVDIVLY-------SLTKYMNGHSDVVMGA------ 217
F L + + V++V Y ++ + G S+ M A
Sbjct: 1759 FAGHSLGEYAALASL-ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 218 -TVTNDDSLQARLKFLQNSMGVVPSPFDCWLV--------------TRGLKTLPCRLKEH 262
+ ++LQ ++ + G + +V R L T+ L
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWL-----VEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 263 ERGSIEVAKFLESHPC--VKGVL 283
+ I++ + +S V+G L
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEGHL 1895
Score = 32.3 bits (73), Expect = 0.36
Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 58/140 (41%)
Query: 292 NHELAKSQWSGTSGMLSFYVNGGAEETR-----IFLESLLIFRCAE-------------- 332
N + G+LS T+ + L F +
Sbjct: 1711 NEHSTSYTFRSEKGLLS--------ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 333 SLG---------GIESLADLPAEMTHKSIPKETRDALGIT-DNLV-RLSVGVEGYTDLIA 381
SLG + S+ L E+ R G+T V R +G Y +IA
Sbjct: 1763 SLGEYAALASLADVMSIESL-VEVVFY------R---GMTMQVAVPRDELGRSNY-GMIA 1811
Query: 382 --------DLDQ-ALRKACK 392
Q AL+ +
Sbjct: 1812 INPGRVAASFSQEALQYVVE 1831
Score = 31.6 bits (71), Expect = 0.52
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 18/84 (21%)
Query: 2 SFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-P----QGFEYSRS 56
SF T IG + +PP IL + +N G P P
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS-LENNEGVPSPMLSISN------ 343
Query: 57 NNPTRRNLERCI----ASLEEAKH 76
T+ ++ + + L K
Sbjct: 344 --LTQEQVQDYVNKTNSHLPAGKQ 365
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 34.7 bits (80), Expect = 0.052
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 112 RYFAQ-VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
Y A+ +A + + E L + I +T +V + + + D++A++A+
Sbjct: 133 LYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSH 192
Query: 171 QHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNG 209
+ L + D L G D + KY+NG
Sbjct: 193 EC-GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG 231
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 34.4 bits (80), Expect = 0.062
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 49/196 (25%)
Query: 78 LCYSSGL--GAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-KI- 133
+ + G A+ H A +I Y F + E F+D I
Sbjct: 84 IFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYP----PFFHLLSATQREGIFIDATGGIN 139
Query: 134 -ENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDIL---------LVLD 180
++ K + + + + NP NPL VF + + + ++ D LV D
Sbjct: 140 LHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRY-DARVLVDEIHAPLVFD 198
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGAT-------------VTNDDSLQA 227
V ++ + + + ++ S
Sbjct: 199 GQH--------------TVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAE 244
Query: 228 RLKFLQNSMGVVPSPF 243
+ L + S
Sbjct: 245 HWQQLSPVIKDGASTL 260
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 34.0 bits (79), Expect = 0.069
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 116 QVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
+ ++G E+ + L +E L T+++ I + +N L T + + +
Sbjct: 132 MLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAH 191
Query: 171 QHPDILLVLD 180
QH +++D
Sbjct: 192 QH-GAKVLVD 200
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 33.6 bits (78), Expect = 0.11
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 116 QVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
VA K G + FV L + +E+ + TK+V + + +N L V + I+ +
Sbjct: 137 MVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAH 196
Query: 171 QHPDILLVLD 180
Q +++D
Sbjct: 197 QA-GAKVLVD 205
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 33.3 bits (77), Expect = 0.11
Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 48/201 (23%)
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH--LLSAGDHIISGDD--VYGGTYRYF 114
E + KH L ++S T+ + S D + +
Sbjct: 32 KRSLLFEEALCEFLGVKHALVFNSA----TSALLTLYRNFS--EFSADRNEIITTPISFV 85
Query: 115 A--QVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTV------FD 161
A + + G F ++ L K I TK + ++V +
Sbjct: 86 ATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAI---------VSVDYAGKSVE 136
Query: 162 VKAISAVVKQHPDILLVLDNT--FLTAYYQKSL-PWGVDIVLYSL--TKYMN---GHSDV 213
V+++ + K+H + + D++ + Y K + + ++S K + G
Sbjct: 137 VESVQKLCKKH-SLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITTAEG---- 190
Query: 214 VMGATVTNDDSLQARLKFLQN 234
GA VTND L ++K ++
Sbjct: 191 --GAVVTNDSELHEKMKLFRS 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.12
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 15/41 (36%)
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
L+K++ +K ++ P + AI A ++
Sbjct: 22 LKKLQASLKLYADDSA---------PAL------AIKATME 47
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 33.2 bits (76), Expect = 0.14
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 25/141 (17%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDFVDLR-------- 131
SG + AV L+ + + + + YR + Q+ K L
Sbjct: 58 GSGTYGMEAVARQLTIDEDCLIIRNGWFS--YR-WTQILEKGKFAKSSTVLTAERTEDTE 114
Query: 132 --------KIENLIKYIK-PNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVL 179
IE + IK + +V+ E + +++ +KA+S V LLV+
Sbjct: 115 APKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVI 173
Query: 180 DNTFLTAYYQKSLPWGVDIVL 200
D + G+D+++
Sbjct: 174 DCIASGCVWLDMKELGIDVLI 194
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis;
HET: MSE PMP; 1.80A {Coxiella burnetii}
Length = 374
Score = 32.9 bits (76), Expect = 0.16
Identities = 45/194 (23%), Positives = 71/194 (36%), Gaps = 41/194 (21%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-- 119
E+ A+L A H + +G A+ I +GD+V + A V
Sbjct: 41 EKFEKRFAALHNAPHAIGVGTGTDALAMS--FKMLN--IGAGDEVITCANTFIASVGAIV 96
Query: 120 KIGLEVDFVD--------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVKAI 165
+ G VD KIE I TK + M V D+ A+
Sbjct: 97 QAGATPVLVDSENGYVIDPEKIE---AAITDKTKAI---------MPVHYTGNIADMPAL 144
Query: 166 SAVVKQHPDILLVLDN--TFLTAYY-QKSLPWGVDIVLYSL--TKYMNGHSDVVMGATVT 220
+ + K+H ++ +V D T L + WG +SL K +N SD G +T
Sbjct: 145 AKIAKKH-NLHIVEDACQTILGRINDKFVGSWG-QFACFSLHPLKNLNVWSDA--GVIIT 200
Query: 221 NDDSLQARLKFLQN 234
+ D +L+ +N
Sbjct: 201 HSDEYAEKLRLYRN 214
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 33.1 bits (76), Expect = 0.16
Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 36/173 (20%)
Query: 36 STTFKQNTPGQPPQG-FEYSRS------------NNPTRRNLERCIASL--EEAKHGLCY 80
TT + + G+ G + + + E+ A + + + +
Sbjct: 11 QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDD--AVFF 68
Query: 81 SSG-LGAVTAVTHLLSAGDHIISGDDVYGGTYRY-------FAQVAPK-IGLEVDFVDLR 131
SG + A+ D+ + + +G + L
Sbjct: 69 PSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLD 128
Query: 132 KIENLIKYIKPNTKMVWIENPTNP----LMTVFDVKAISAVVKQHPDILLVLD 180
+I+ L P+ + +E P +++ IS ++ I L LD
Sbjct: 129 EIKAL-----PDIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLD 175
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 33.0 bits (76), Expect = 0.17
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 116 QVAPKIGLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
+ A + G +V + ++ I +T++V + + + L V D++A++ +V
Sbjct: 132 RAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLV 191
Query: 170 KQHPDILLVLD 180
L+V+D
Sbjct: 192 HDV-GALVVVD 201
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 32.7 bits (75), Expect = 0.20
Identities = 23/186 (12%), Positives = 52/186 (27%), Gaps = 25/186 (13%)
Query: 97 GDHIISGDDVYGGTYRYFAQVAPK-IGLEVDF--VDLRKIENLIKYIKPNTKMVWI---- 149
+ Y + + I + + D+ + L+K P K +W
Sbjct: 131 KVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVK--DPQVKGMWTVPVF 188
Query: 150 ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNG 209
NPT + + ++ + PD +V DN + P +++ +
Sbjct: 189 GNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVI--EFAQAAGN 246
Query: 210 HSDVVMGAT-------------VTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP 256
+ ++ + N G+ P+ + + +
Sbjct: 247 PNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVA 306
Query: 257 CRLKEH 262
LK H
Sbjct: 307 -GLKAH 311
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 32.7 bits (75), Expect = 0.20
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 24/191 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPK---IGLEVDFVDLRKIENLIKYIKPNTKMVWI 149
LS +I Y + + + + ++ D D+ +E L P+ K +
Sbjct: 120 WLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAG-TDPSVKGILF 178
Query: 150 ----ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLT-AYYQKSLPWGVDIVLYSLT 204
NP +++ + ++ + PD + D+ + ++ V+ V L
Sbjct: 179 VPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFV--VLA 236
Query: 205 KYMNGHSDVVMGAT-------------VTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
+ + A+ V + + L + + P+ + +
Sbjct: 237 RDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKF 296
Query: 252 LKTLPCRLKEH 262
L P L+
Sbjct: 297 LTEYPGGLEGL 307
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET:
TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Length = 373
Score = 32.5 bits (75), Expect = 0.21
Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 42/195 (21%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-- 119
+ E+ A + + +GL A+ + L I GD+V + + A
Sbjct: 39 KKFEQEFADYCNVNYCIGCGNGLDALHLI--LKGYD--IGFGDEVIVPSNTFIATALAVS 94
Query: 120 KIGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVKA 164
G + FV+ IE I TK + + V D+
Sbjct: 95 YTGAKPIFVEPDIRTYNIDPSLIE---SAITEKTKAI---------IAVHLYGQPADMDE 142
Query: 165 ISAVVKQHPDILLVLDN--TFLTAYY-QKSLPWGVDIVLYSL--TKYMNGHSDVVMGATV 219
I + K++ ++ L+ D + Y K G D +S K + D GA V
Sbjct: 143 IKRIAKKY-NLKLIEDAAQAHGSLYKGMKVGSLG-DAAGFSFYPAKNLGSLGDG--GAVV 198
Query: 220 TNDDSLQARLKFLQN 234
TND L ++K L N
Sbjct: 199 TNDKDLAEKIKALSN 213
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 32.0 bits (72), Expect = 0.29
Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 17/182 (9%)
Query: 115 AQVAPKIGLEVDFVDLRKI--ENLIKYIKPNTK---MVWIENPTNPLMTVFDVKAISAVV 169
+ V K L+ D V L K E + TK + +I++ PL+ F + +
Sbjct: 72 SDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIF 131
Query: 170 KQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229
++L + Y L + + G + ++ Q L
Sbjct: 132 GGEIKTHILLFLPKSVSDYDGKLSN-----FKTAAESFKGKILFI--FIDSDHTDNQRIL 184
Query: 230 KFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPS 289
+F P+ L K P + E + + +F ++G + P L S
Sbjct: 185 EFFGLKKEECPAVRLITLEEEMTKYKP---ESEELTAERITEFCHRF--LEGKIKPHLMS 239
Query: 290 HP 291
Sbjct: 240 QE 241
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 32.2 bits (74), Expect = 0.30
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 64 LERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIIS 102
+E+ + + +S+G A + ++ L G+++I
Sbjct: 114 VEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVIL 153
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
venezuelae} PDB: 2oge_A*
Length = 399
Score = 32.2 bits (74), Expect = 0.31
Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 42/195 (21%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVA--P 119
E A+ E H + +SG+ A+ L G I GD+V ++ Y A
Sbjct: 66 EGFEAEFAAYCETDHAVGVNSGMDALQLA--LRGLG--IGPGDEVIVPSHTYIASWLAVS 121
Query: 120 KIGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVKA 164
G V+ +E K I P T+ + + V D+ A
Sbjct: 122 ATGATPVPVEPHEDHPTLDPLLVE---KAITPRTRAL---------LPVHLYGHPADMDA 169
Query: 165 ISAVVKQHPDILLVLDN--TFLTAYY-QKSLPWGVDIVLYSL--TKYMNGHSDVVMGATV 219
+ + +H + +V D Y ++ + +S K + D GA V
Sbjct: 170 LRELADRH-GLHIVEDAAQAHGARYRGRRIGAGS-SVAAFSFYPGKNLGCFGDG--GAVV 225
Query: 220 TNDDSLQARLKFLQN 234
T D L RL+ L+N
Sbjct: 226 TGDPELAERLRMLRN 240
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 31.4 bits (72), Expect = 0.49
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIIS 102
LE +++ + + +S+G + + ++ L+ D+I+
Sbjct: 91 VELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILL 132
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 31.3 bits (72), Expect = 0.50
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 42/195 (21%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFA--QVAP 119
LE +A AK+ + ++G A+ V ++ G + GD+V + Y A +
Sbjct: 38 TELEDRLADFVGAKYCISCANGTDALQIV--QMALG--VGPGDEVITPGFTYVATAETVA 93
Query: 120 KIGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVKA 164
+G + +VD + +E I P TK + + V D A
Sbjct: 94 LLGAKPVYVDIDPRTYNLDPQLLE---AAITPRTKAI---------IPVSLYGQCADFDA 141
Query: 165 ISAVVKQHPDILLVLDN--TFLTAYY-QKSLPWGVDIVLYSL--TKYMNGHSDVVMGATV 219
I+A+ ++ I ++ D +F +Y ++S + S + + + D GA
Sbjct: 142 INAIASKY-GIPVIEDAAQSFGASYKGKRSCNLS-TVACTSFFPSAPLGCYGDG--GAIF 197
Query: 220 TNDDSLQARLKFLQN 234
TNDD L ++ +
Sbjct: 198 TNDDELATAIRQIAR 212
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 31.4 bits (72), Expect = 0.52
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 62 RNLERCIASLEEAKHGLCYSSG----LGAVTAVTHLLSAGDHIIS 102
+ LE+ I+ + YSS G LL D IIS
Sbjct: 91 KELEKDISEFLGTDDTILYSSCFDANGGLFET---LLGPEDAIIS 132
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 31.1 bits (71), Expect = 0.57
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 59 PTRRNLERCIASL--EEAKHGLCYSSG-LGAVTAVTHLLSAGDHIISGDD--VY---GGT 110
PT LER A +EA L SG +G ++ GD +I D ++ G
Sbjct: 38 PTINELERLAAETFGKEA--ALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGA 95
Query: 111 YRYFAQVAPK-IGLEVDFVDLRKIENLIK---YIKPNTKMVWIENPTN----PLMTVFDV 162
+ V P + + +D + I+ P T ++ IEN N ++ + ++
Sbjct: 96 MAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 155
Query: 163 KAISAVVKQH 172
K I + K+H
Sbjct: 156 KEICTIAKEH 165
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 31.0 bits (71), Expect = 0.72
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 62 RNLERCIASLEEAKHGLCYSSG----LGAVTAVTHLLSAGDHIIS 102
+ LE+ +A+ + + YSS G LL A D IIS
Sbjct: 93 KELEQKLAAFLGMEDAILYSSCFDANGGLFET---LLGAEDAIIS 134
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 30.8 bits (70), Expect = 0.73
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 134 ENLIKYIKPNTK-----MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
EN + I+ K + I P + DVK I+ V ++ D+ L+++
Sbjct: 133 ENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEY-DVPLLVN 183
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 30.9 bits (70), Expect = 0.74
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 125 VDFVDLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDN 181
++ D++K + N + + + NP NP ++ + I K ++L+ D
Sbjct: 219 LETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNE-GLVLLADE 277
Query: 182 TFLTAYYQK 190
YQ+
Sbjct: 278 V-----YQE 281
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 30.6 bits (70), Expect = 0.82
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165
Y A+ + + L K +L + +V + +P NP ++ +
Sbjct: 120 IYEGAAKFI---KAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEEL 176
Query: 166 SAVV---KQHPDILLVLDN 181
+ V +H D +L+ D
Sbjct: 177 ISWVKLALKH-DFILINDE 194
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 30.5 bits (69), Expect = 1.2
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 22/152 (14%)
Query: 128 VDLRKIENLIKYIKPNTKMVWI----ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
D+ +E L+K P K +W+ NPT +T K +SA+ PD +V DN +
Sbjct: 167 PDMDAVEELVK--NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAY 224
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGAT-------------VTNDDSLQARLK 230
P +DI L + + + +
Sbjct: 225 AVHTLTDEFPEVIDI--VGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYT 282
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEH 262
G+ P+ + R ++
Sbjct: 283 GHAGIRGIGPNKVNQLAHARYFGDAE-GVRAV 313
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 30.2 bits (69), Expect = 1.2
Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 54/203 (26%)
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH--LLSAGDHIISGDDVYGGTYRYFA- 115
P + LE L ++ + SS TA H L++ G I GD+V + + +
Sbjct: 39 PKNQELEAAFCRLTGNQYAVAVSSA----TAGMHIALMALG--IGEGDEVITPSMTWVST 92
Query: 116 -QVAPKIGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------ 159
+ +G VD IE I P TK + + V
Sbjct: 93 LNMIVLLGANPVMVDVDRDTLMVTPEHIEAA---ITPQTKAI---------IPVHYAGAP 140
Query: 160 FDVKAISAVVKQHPDILLVLDNT--FLTAYYQKSLPWG-VDIVLYSL--TKYMN---GHS 211
D+ AI A+ +++ I ++ D T+Y + G ++S K + G
Sbjct: 141 ADLDAIYALGERY-GIPVIEDAAHATGTSYKGR--HIGARGTAIFSFHAIKNITCAEG-- 195
Query: 212 DVVMGATVTNDDSLQARLKFLQN 234
G VT++ +L+ L+
Sbjct: 196 ----GIVVTDNPQFADKLRSLKF 214
>1u5x_A Tumor necrosis factor ligand superfamily member 1; TNFSF, cytokine,
jelly-roll, trimer, hormone-growth factor C; 1.80A {Mus
musculus} SCOP: b.22.1.1 PDB: 1u5y_A 1u5z_A 3k48_A
1xu1_A 1xu2_A
Length = 140
Score = 29.1 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 47 PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHI 100
G SR R L RCI S+ S V L GD I
Sbjct: 66 FTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVF----HLHQGDII 115
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 29.9 bits (68), Expect = 1.6
Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 36/177 (20%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN--LIK 138
L + + + D Y Y A++ E+ + + EN +
Sbjct: 105 KVDLFRLLS---FFGPNQTVAIQDPSYP-AYLDIARLTG--AKEIIALPCLQ-ENAFFPE 157
Query: 139 YIK-PNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAY----YQK 190
+ + + ++ + +P NP ++ ++AI +H +IL++ D AY
Sbjct: 158 FPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDA----AYSTFISDP 212
Query: 191 SLP---------WGVDIVLYSLTKY--MNGHSDVVMGATVTNDDSLQARLKFLQNSM 236
SLP I + S +K G + +G TV + A F+
Sbjct: 213 SLPKSIFEIPDARFCAIEINSFSKPLGFAG---IRLGWTVIPQELTYADGHFVIQDW 266
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 133 IENLIKYIKPNTK---MVWIENPTNP---LMTVFDVKAISAVVK----QHPDILLVLD 180
++L++ ++ K ++ + P NP T +V I +K + ++ V+D
Sbjct: 176 TDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVD 233
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 29.6 bits (67), Expect = 2.2
Identities = 30/190 (15%), Positives = 50/190 (26%), Gaps = 53/190 (27%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGL-----EV 125
+ + + + + D Y G T + I +
Sbjct: 142 KCDIARIQM---MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDN 198
Query: 126 DFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDV---KAISAVVKQHPDILLVLDN 181
F DL K T +++ +P NP + +++ +LV D
Sbjct: 199 HFFPDLSKA--------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GSILVYDA 249
Query: 182 TFLTAY----YQKSLP---------WGVDIVLYSLTKY--MNGHSDVVMGATVTNDDSLQ 226
AY P V I S +KY G V +G TV
Sbjct: 250 ----AYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG---VRLGWTVVPKALKY 302
Query: 227 ARLKFLQNSM 236
A + +
Sbjct: 303 ANGEPVHADW 312
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 29.1 bits (66), Expect = 2.5
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 64 LERCIASLEEAKHGLCYSSG----LGAVTAVTHLLSAGDHIIS 102
+E+ +A L SG +G + + ++
Sbjct: 109 IEKRLAKFTGFDECLLSQSGWNANVGLLQT---ICQPNTNVYI 148
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W,
structural genomics, PR structure initiative; 2.14A
{Rhodococcus jostii}
Length = 289
Score = 29.0 bits (66), Expect = 2.8
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 85 GAVTAVTHLLSAGDH----IISGDDVYGGTYRY--FAQVAPKIGLEVD 126
G AV HL G H I G D GG R F + GL
Sbjct: 113 GITLAVDHLTELG-HRNIAHIDGADAPGGADRRAGFLAAMDRHGLSAS 159
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 29.0 bits (66), Expect = 2.8
Identities = 17/116 (14%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 78 LCYSSGL--GAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKI-- 133
+ +S+G+ T++ + ++ +Y F ++ ++ L+K
Sbjct: 85 IVFSAGIVPALSTSIQAFTKENESVLVQPPIYPP----FFEMVTTNNRQLCVSPLQKQND 140
Query: 134 ------ENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
E+L K + K++ + +P NP+ V+ ++ + ++ ++ ++++V D
Sbjct: 141 TYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKY-NVIVVAD 195
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase;
HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3
d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Length = 358
Score = 28.8 bits (65), Expect = 3.4
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT---FL 184
+ + + N W + + A +K P ++++DNT ++
Sbjct: 38 AEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYI 97
Query: 185 TAYYQKSLPWGVDIV 199
+Y K + G+ I
Sbjct: 98 AGFYTKFVENGISIA 112
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 28.0 bits (62), Expect = 3.9
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 68 IASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGG 109
+ +L + + L + D +I+ G
Sbjct: 45 LKALRDQGMPCAWIDELPEALSTPLAAPVNDWMIAAPRPTAG 86
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 28.7 bits (65), Expect = 3.9
Identities = 25/208 (12%), Positives = 55/208 (26%), Gaps = 68/208 (32%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGL------- 123
+ + + + I D Y G T ++ V +
Sbjct: 129 KCDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP 185
Query: 124 EVDFV-DLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVL 179
E F DL + T +++ +P NP T + + K++ ++V
Sbjct: 186 ENGFFPDLSTV--------GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVY 236
Query: 180 DNTFLTAY------------YQKSLPWG---VDIVLYSLTK----------YMNGHSDVV 214
D+ AY ++ +P G V + S + + ++
Sbjct: 237 DS----AYAMYMSDDNPRSIFE--IP-GAEEVAMETASFSNYAGFTGVRLGWTVIPKKLL 289
Query: 215 MGATVTNDDSLQARLKFLQNSMGVVPSP 242
+ R+ +
Sbjct: 290 -YSDGFPVAKDFNRII--CTCFNGASNI 314
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 28.3 bits (64), Expect = 4.2
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV---KQHPDILLVLD 180
F ++ + + TK+V++ +P NP +V D+ V ++ ++ D
Sbjct: 151 APSF--NPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-GFIIASD 207
Query: 181 NTFLTAYYQKSLPWG-------------VDIVLYSLTK 205
+ Y+ + P G ++ SL+K
Sbjct: 208 ECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSK 245
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 27.7 bits (61), Expect = 5.7
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 119 PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
P + + +D + + I ++ IE T L V+A+ + +P +++
Sbjct: 4 PMLQVALDNQTMDSAYETTRLIAE--EVDIIEVGT-ILCVGEGVRAVRDLKALYPHKIVL 60
Query: 179 LD 180
D
Sbjct: 61 AD 62
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 28.0 bits (63), Expect = 6.0
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 25/101 (24%)
Query: 74 AKHGLCYSSGLGAVTAVTH-------LLSAG-DHIISGDDVYGGTYRYFAQVAPKIGLEV 125
+ G V + G H+ R +QV K
Sbjct: 162 LNN-------AGYVVDLVSASLSQALAAKRGVRHLY----------REPSQVTQKYFAIF 204
Query: 126 DFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166
D V+ + L+ +K N ++ I++ + + IS
Sbjct: 205 DAVNSQNAAALVPSLKANGHIICIQDRIPAPIDPAFTRTIS 245
>2xn6_A Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y
T44; 1.29A {Homo sapiens} PDB: 2xn7_A* 2xn5_A* 2riv_A
2xn3_A* 2riw_A*
Length = 350
Score = 27.6 bits (62), Expect = 7.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 132 KIENLIKYIKPNTKMV 147
K+ LI+ +KPNT MV
Sbjct: 153 KVVGLIQDLKPNTIMV 168
>1as4_A Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A
{Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_A* 4caa_A 3caa_A
Length = 341
Score = 27.6 bits (62), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 132 KIENLIKYIKPNTKMV 147
KI +LIK + T MV
Sbjct: 149 KITDLIKDLDSQTMMV 164
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 27.4 bits (60), Expect = 8.5
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 193 PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
+ +L + K M + + +++ R L+N + W
Sbjct: 418 EYTSKFLLNEMPKVMGSLIGDGSAGAIIDLETVHYRNSALRNLLDKGEEKLSVW 471
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 27.2 bits (60), Expect = 9.0
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
P + + +D +L+ + ++ IE T + + + + PD ++
Sbjct: 5 LPNLQVALDHSNLKGAITAAVSVGN--EVDVIEAGT-VCLLQVGSELVEVLRSLFPDKII 61
Query: 178 VLD 180
V D
Sbjct: 62 VAD 64
>3dy0_A N-terminus plasma serine protease inhibitor; serpin, blood
clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo
sapiens} PDB: 1lq8_A* 2hi9_A*
Length = 336
Score = 27.2 bits (61), Expect = 9.1
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 132 KIENLIKYIKPNTKMV 147
KI +L+K + N ++
Sbjct: 147 KIVDLLKNLDSNAVVI 162
>2ceo_A Thyroxine-binding globulin; transport, serpin, hormone trans
thyroxine, disease mutation, glycoprotein; HET: T44;
2.80A {Homo sapiens}
Length = 379
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 132 KIENLIKYIKPNTKMV 147
K+ LI+ +KPNT MV
Sbjct: 148 KVVGLIQDLKPNTIMV 163
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 27.2 bits (61), Expect = 9.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 103 GDDV----YGGTYRYFAQVAPKIGLEVDFVDLRKI 133
GDDV YG + A ++ V+ VDL+ +
Sbjct: 249 GDDVTLVTYGAVVHKALEAAERVKASVEVVDLQTL 283
>3ndd_A Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo
sapiens} PDB: 3ndf_A 7api_A* 8api_A* 9api_A* 1d5s_A
1ezx_A 3t1p_A 2d26_A 1qmb_A
Length = 343
Score = 27.2 bits (61), Expect = 9.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 132 KIENLIKYIKPNTKMV 147
KI +L+K + +T
Sbjct: 153 KIVDLVKELDRDTVFA 168
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 27.6 bits (62), Expect = 9.4
Identities = 39/197 (19%), Positives = 62/197 (31%), Gaps = 53/197 (26%)
Query: 64 LERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFA--QVAPK 120
E +A L +H + + +AG +V + + A
Sbjct: 57 FEERVAGLAGVRHAVATCNATAGLQLL---AHAAG----LTGEVIMPSMTFAATPHALRW 109
Query: 121 IGLEVDFVD---------LRKIENLIKYIKPNTKMVWIENPTNPLMTV------FDVKAI 165
IGL F D ++ + P T V + V +
Sbjct: 110 IGLTPVFADIDPDTGNLDPDQVAAAVT---PRTSAV---------VGVHLWGRPCAADQL 157
Query: 166 SAVVKQHPDILLVLDN--TFLTAYY-QKSLPWGVDIVLYSL--TKYMN---GHSDVVMGA 217
V +H + L D A + + G D ++S TK +N G GA
Sbjct: 158 RKVADEH-GLRLYFDAAHALGCAVDGRPAGSLG-DAEVFSFHATKAVNAFEG------GA 209
Query: 218 TVTNDDSLQARLKFLQN 234
VT+D L AR++ L N
Sbjct: 210 VVTDDADLAARIRALHN 226
>1qmn_A AACT, alpha-1-antichymotrypsin; serpin, serine proteinase
inhibitor, partial loop insertion, loop-sheet
polymerization, emphysema, disease mutation; 2.27A {Homo
sapiens} SCOP: e.1.1.1 PDB: 3dlw_A
Length = 401
Score = 27.2 bits (61), Expect = 9.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 132 KIENLIKYIKPNTKMV 147
KI +LIK + T MV
Sbjct: 169 KITDLIKDLDSQTMMV 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,047,930
Number of extensions: 359155
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 168
Length of query: 393
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 297
Effective length of database: 4,021,377
Effective search space: 1194348969
Effective search space used: 1194348969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)