RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12791
(393 letters)
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 352 bits (903), Expect = e-120
Identities = 156/390 (40%), Positives = 230/390 (58%), Gaps = 11/390 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 FNTQIVHAGQQPDPS-TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 66
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A LE + GL +SG+ A+T L GDHI+S +YG T+ + + PK
Sbjct: 67 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + LLV+DN
Sbjct: 127 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGI-AHQQGALLVVDN 185
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVP 240
TF++ Y Q+ L G DIV++S+TKY+NGH DV+ G V + + QAR L++ G
Sbjct: 186 TFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCM 245
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 SPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM 305
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 SLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKA 365
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 GITDGLIRLSVGLEDPEDIINDLEHAIRKA 395
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 329 bits (845), Expect = e-111
Identities = 144/390 (36%), Positives = 225/390 (57%), Gaps = 11/390 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTP-------GQPPQGFEYSRSNNPTRR 62
FAT+A+H G +P ++PP+ + TF T G YSR +NPT
Sbjct: 4 FATRAIHHGYDPQDH-GGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLN 62
Query: 63 NLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE +ASLE + GL +SG+GA+ + + LL GD ++ G+ +YG T+ + +
Sbjct: 63 LLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF 122
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H +V+DN
Sbjct: 123 GVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH-GATVVVDN 181
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVP 240
T+ T Y Q+ L G D+V++S TKY++GH D+ G V + + + RL+ L++ G V
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL 241
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P + LA+ Q
Sbjct: 242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM 301
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S E R
Sbjct: 302 SQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHY 361
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 362 GISEGLVRLSVGLEDIDDLLADVQQALKAS 391
>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 314 bits (804), Expect = e-105
Identities = 189/387 (48%), Positives = 257/387 (66%), Gaps = 9/387 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
FATKA+H G D S VI PI LSTTFKQ++P P +EYSRS NP R NLER +A
Sbjct: 8 FATKAIHAGEHVDVHGS--VIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVA 65
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
+LE A++GL +SSG + L G H +S DVYGGT+RYF +VA G+E F +
Sbjct: 66 ALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP---DILLVLDNTFLTA 186
+ +L + IK NTK+VWIE PTNP + V D++ ++ ++K+H D++LV+DNTFL+
Sbjct: 126 -DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSP 184
Query: 187 YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
Y L +G DIV++S TKY+NGHSDVV+G TN+ L RL+FLQN++G +PSPFD W
Sbjct: 185 YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAW 244
Query: 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESH-PCVKGVLHPGLPSHPNHELAKSQWSGT-- 303
L RGLKTL R+++ + ++A+FL + V V +PGL +HPN+++ Q
Sbjct: 245 LTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALG 304
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
GM+SF + GGAE F S +F AESLGGIESL ++PA MTH IPKE R+A G+
Sbjct: 305 GGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVF 364
Query: 364 DNLVRLSVGVEGYTDLIADLDQALRKA 390
D+LVR+SVG+E DL+ D+ QAL++A
Sbjct: 365 DDLVRISVGIEDTDDLLEDIKQALKQA 391
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
{Thermus thermophilus [TaxId: 274]}
Length = 421
Score = 314 bits (804), Expect = e-105
Identities = 124/420 (29%), Positives = 201/420 (47%), Gaps = 44/420 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
F T +H G EP+ + PI +T++ +P G YSR NPT
Sbjct: 3 FETLQLHAGYEPEPT-TLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVD 61
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+LE K L +SG A T L AGD+I+S ++YGGT+ F ++
Sbjct: 62 VLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL 121
Query: 122 GLEVDFVDLRKIENL-IKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV F + + T+ W+E+ NP + + D++A++ ++ L+V +
Sbjct: 122 GIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDN 181
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL--------------- 225
+ Y + L WG +V +SLTK++ GH V+ GA V +
Sbjct: 182 TFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG 241
Query: 226 -----------------QARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268
+AR+ L++ G PF+ W+V G++TL R + H ++
Sbjct: 242 YHGLRLTEAFGELAFIVKARVDGLRD-QGQALGPFEAWVVLLGMETLSLRAERHVENTLH 300
Query: 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG-MLSFYVNGGAEETRIFLESLLI 327
+A +L P V V +PGLP HP+H+ A+ + G G +L+F + GG E + F+ L +
Sbjct: 301 LAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKL 360
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
++G +LA PA TH + E + G++ +VRLSVG+E DL A+L +AL
Sbjct: 361 ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 305 bits (782), Expect = e-102
Identities = 142/381 (37%), Positives = 232/381 (60%), Gaps = 5/381 (1%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCI 68
+ +T V++ ++ D + + + P+ + TFKQ + + ++Y+RS NPTR LE +
Sbjct: 2 SVSTLLVNLDNKFDPFDA--MSTPLYQTATFKQPSAIENG-PYDYTRSGNPTRDALESLL 58
Query: 69 ASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
A L++A C++SG+ A++AVTHL+ G+ I++GDDVYGG+ R +QV P+ G+ V V
Sbjct: 59 AKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 118
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
+ K++ + I P TK+VW+E+PTNP + D++ IS + L+++DN+ ++
Sbjct: 119 NTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ-GALVLVDNSIMSPVL 177
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
+ L G DIV++S TK++ GHSDV+ G + L + FLQNS G +PFDCWL
Sbjct: 178 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC 237
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RG+KT+ R+++ + + ++A +L SHP VK V + GLP HP H + +G +
Sbjct: 238 LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHH-LHFSQAKGAGSVF 296
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
++ G ++ +E+ F A S G ++SL +P M+H SIP E R+A G+T++LVR
Sbjct: 297 SFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVR 356
Query: 369 LSVGVEGYTDLIADLDQALRK 389
+S G+E DLI+DLD A +
Sbjct: 357 ISAGIEDVDDLISDLDIAFKT 377
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 398
Score = 300 bits (768), Expect = e-100
Identities = 131/398 (32%), Positives = 211/398 (53%), Gaps = 15/398 (3%)
Query: 2 SFLPQDTAFATKAVHIGSEPDQWR-SQCVIPPIILSTTFKQNTPGQ-------PPQGFEY 53
SFL D + A+H G + + + P++ ++ + N + FEY
Sbjct: 5 SFLNSD---GSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEY 61
Query: 54 SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYR 112
R NPT LE I++LE A+ L +SG+ A T + L+ AG HI++ D Y T
Sbjct: 62 GRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRI 121
Query: 113 YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNT-KMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ + PK+G+ +D + L + + + E+PTNP + D++ +S + +
Sbjct: 122 FIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHE 181
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231
L+ +D TF T QK+L G D+VL+S TK++ G + V+ ++ L + ++
Sbjct: 182 K-GALVCIDGTFATPLNQKALALGADLVLHSATKFL-GGHNDVLAGCISGPLKLVSEIRN 239
Query: 232 LQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHP 291
L + +G +P +L+ RG+KTL R+++ ++ +A+ LE+HP V+ V +PGL SHP
Sbjct: 240 LHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHP 299
Query: 292 NHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351
H +AK Q +G G +SF V+G T F+++L I A S GG ES+ D PA M++
Sbjct: 300 EHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWD 359
Query: 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + R GI DNLVR S GVE + DL AD+ QAL
Sbjct: 360 LSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDS 397
>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL1 [TaxId: 5722]}
Length = 394
Score = 299 bits (765), Expect = 2e-99
Identities = 154/392 (39%), Positives = 228/392 (58%), Gaps = 11/392 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
AT +H + DQ+ + IPPI ++TF + Q G+ Y+R NPT
Sbjct: 5 PATACIHANPQKDQFGA--AIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVS 62
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
NLE IA LE+ + + SSG+GA+ A V +L AGDH+IS + +YG T+ F K
Sbjct: 63 NLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF 122
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G++VDF++ + K++KPNTK+V+ E P NP + + D++ + +L++ DN
Sbjct: 123 GIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 182
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSMGVVP 240
TF + + +GVD+V++S TKY+NGH+DVV G D LQ R+ +++ G V
Sbjct: 183 TFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVI 242
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SP D WL+TRGL TL R+K +++VA++L+SHP V+ V +PG H H++AK Q
Sbjct: 243 SPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM 302
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
M++F + G E + L++L + A SLGG ESL PA MTH +PKE R+A
Sbjct: 303 RMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAA 362
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
GITD ++RLSVG+E +LIAD Q L +
Sbjct: 363 GITDGMIRLSVGIEDADELIADFKQGLDALLR 394
>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS
{Escherichia coli [TaxId: 562]}
Length = 384
Score = 295 bits (755), Expect = 5e-98
Identities = 151/384 (39%), Positives = 222/384 (57%), Gaps = 4/384 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT AV G D+ + CV+PPI LS+T+ +P + +YSR NPTR ++R +A
Sbjct: 3 QATIAVRSGLNDDE-QYGCVVPPIHLSSTYNFTGFNEP-RAHDYSRRGNPTRDVVQRALA 60
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
LE + ++G+ A+ VT + L GD +++ D YGG+YR F +A + V FV
Sbjct: 61 ELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 120
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
D + L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+
Sbjct: 121 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVS-VVDNTFLSPAL 179
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q L G D+VL+S TKY+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 180 QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL 239
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLS
Sbjct: 240 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLS 299
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F ++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R
Sbjct: 300 FELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLR 359
Query: 369 LSVGVEGYTDLIADLDQALRKACK 392
+S G+E DLIADL+ R A K
Sbjct: 360 ISTGIEDGEDLIADLENGFRAANK 383
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 266 bits (681), Expect = 1e-87
Identities = 142/328 (43%), Positives = 200/328 (60%), Gaps = 3/328 (0%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE A+ +SG+GA+ +V L AGDH+IS D +YG T+ F K G
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDF+D+ N+ K++KPNT++V+ E P NP + V D++ ++ DIL+++DNT
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNT 122
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSMGVVPS 241
F + L GVDIV++S TKY+NGH+DVV G + D + + + +++ G + S
Sbjct: 123 FASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS 182
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D WL+TRG TL R+K + +VA+FL H VK V +PGLP HP HE+AK Q
Sbjct: 183 PHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK 242
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
M++F V+G + + L++ + A SLGG ESL PA MTH +PKE R+A G
Sbjct: 243 MFGSMIAFDVDGLEKAKK-VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRK 389
+TDNL+RLSVG E D+I DL QAL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQALDL 329
>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia
coli [TaxId: 562]}
Length = 391
Score = 228 bits (581), Expect = 7e-72
Identities = 110/392 (28%), Positives = 195/392 (49%), Gaps = 16/392 (4%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTP--------GQPPQGFEYSRSNNPTR 61
T+ V+ G + V I +++ ++ + Y R T
Sbjct: 2 LDTQLVNAGRSKK-YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTH 60
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
+L++ + LE + + G AV ++ + GDH++ + Y + + +++ K
Sbjct: 61 FSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK 120
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVL 179
+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+ PD ++++
Sbjct: 121 LGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMI 180
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNT+ K+L +G+D+ + + TKY+ GHSD ++G V N + + MG +
Sbjct: 181 DNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYLMGQM 239
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
++ +RGL+TL RL++H S++VA++L HP V V HP LP HE K
Sbjct: 240 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRD 299
Query: 300 WSGTSGMLSFYVNG--GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
++G+SG+ SF + EE +L++ +F A S GG ESL +I +
Sbjct: 300 FTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAI--RPQ 357
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + L+RL +G+E DLIADLD +
Sbjct: 358 GEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 389
>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 366
Score = 126 bits (317), Expect = 1e-33
Identities = 38/318 (11%), Positives = 96/318 (30%), Gaps = 25/318 (7%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
+E + ++ A+ A L I ++ G + +
Sbjct: 56 NEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPG----HPSIERSCK 111
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTN-PLMTVFDVKAISAVVKQHPDILLVLD 180
+ + + K+ ++ I +T ++ + + ++ + + K + ++ + ++ +D
Sbjct: 112 IVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA-KNKEAIVFVD 170
Query: 181 NTFLTAYY-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
+ +L G D+V+ S K M G + + L ++
Sbjct: 171 DASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL----LAGKKELVDKIYIEGTK 226
Query: 236 MGVVPSPFDCWLVTRGLKTL-PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHE 294
G+ P + R LK R+++ + + +
Sbjct: 227 FGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 286
Query: 295 LA-KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353
+ + E L++ I ++A +P I
Sbjct: 287 TPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGII--------TITVAGMPGASKSLRID 338
Query: 354 KETRDALGITDNLVRLSV 371
+RDA I DN + ++
Sbjct: 339 LTSRDAERIDDNYIIKAI 356
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 59.9 bits (144), Expect = 1e-10
Identities = 52/312 (16%), Positives = 97/312 (31%), Gaps = 28/312 (8%)
Query: 84 LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIK 138
L A G HII+ + Q+ + G EV ++ ++ ++ L
Sbjct: 80 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLE-REGFEVTYLAPQRNGIIDLKELEA 138
Query: 139 YIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDI 198
++ +T +V I + N + V D+ AI + + I V + VD+
Sbjct: 139 AMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDL 198
Query: 199 VLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV--TRGLKTLP 256
+ +S K +GA + V G+
Sbjct: 199 MSFSGHKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255
Query: 257 CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316
KE +E + L + L G+ L G +L+ N
Sbjct: 256 RIAKEEMATEMERLRGLRNR------LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEG 309
Query: 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY 376
E+ I + + A S G + A L +++ A +R S+G +
Sbjct: 310 ESLI----MALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSS----IRFSLGR--F 359
Query: 377 TDLIADLDQALR 388
T ++D +
Sbjct: 360 TT-EEEIDYTIE 370
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 55.5 bits (133), Expect = 3e-09
Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 21/215 (9%)
Query: 47 PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDV 106
PP G R + E + S+ + + +L GD +I
Sbjct: 66 PPAGIPELREALAEKFRRENGL-SVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPY 124
Query: 107 YGGTYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVWIENPTNPLMTVFD- 161
+ Y + A + +EV+ + E + + I P TK + + +P NP V+
Sbjct: 125 WVS-YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQK------SLPWGVDIVLYSLTKYMN--GHS 211
++A++ + +H D LV D + Y+ + + + K G
Sbjct: 184 EVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWR 242
Query: 212 DVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
+G + ++A + S +
Sbjct: 243 ---IGYACGPKEVIKAMASVSRQSTTSPDTIAQWA 274
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 50.6 bits (120), Expect = 2e-07
Identities = 56/371 (15%), Positives = 106/371 (28%), Gaps = 52/371 (14%)
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLL-SAGDHIISGDDVYGGTYRYFAQ 116
+ +LE+ + L KH + G GA ++ L G ++ +
Sbjct: 74 SENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKN 133
Query: 117 VAPKIGLEVDF-------------VDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVF-- 160
A + + D +DL K+ LIK N + + N
Sbjct: 134 GATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVS 193
Query: 161 --DVKAISAVVKQHPDILLVLDNT--FLTAYYQKSLPWG-VDIVLYSLTKYMNGHSDVVM 215
+++A+ + + I + D T AY+ K G ++ + + M ++D
Sbjct: 194 MANMRAVHEMASTY-GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCT 252
Query: 216 ------------GATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
G ND+ + + K L +PS + R
Sbjct: 253 MSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY 312
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHP-NHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322
K + + H + + + I++
Sbjct: 313 EYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYM 372
Query: 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382
E+ R E GI S T ++ + VRL++ YT A
Sbjct: 373 ETG--VRSMER--GIVSAGRSKE--TGENHRPKL--------ETVRLTIPRRVYTY--AH 416
Query: 383 LDQALRKACKV 393
+D K+
Sbjct: 417 MDVVADGIIKL 427
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 49.1 bits (116), Expect = 4e-07
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 24/139 (17%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-------IENLIKYIK 141
++ L G+ ++ + Y +A G + V + ++ L KY+
Sbjct: 102 GLSAFLKDGEEVLIPTPAFVS-YAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVT 157
Query: 142 PNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTFLTAYYQ-------KS 191
T+ + I +P NP V D++ I+ V +H D++++ D + Y S
Sbjct: 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIAS 216
Query: 192 LPWGVD--IVLYSLTKYMN 208
L + I + +K
Sbjct: 217 LDGMFERTITVNGFSKTFA 235
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 48.8 bits (115), Expect = 6e-07
Identities = 49/385 (12%), Positives = 108/385 (28%), Gaps = 64/385 (16%)
Query: 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDD--------V 106
S + + L + ++ ++ + G GA + L+ + D
Sbjct: 71 SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNY 130
Query: 107 YGGTYRYFAQVA---------------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIEN 151
+ T + +Q+ DL +E I+ + PN +
Sbjct: 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190
Query: 152 PTN-----PLMTVFDVKAISAVVKQHPDILLVLD--NTFLTAYYQKSLPWGV-DIVLYSL 203
T+ +++ ++KA+ ++ K++ DI +V+D AY+ K D + +
Sbjct: 191 ITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQI 249
Query: 204 TKYMNGHSDVVMGAT------------VTNDDSLQARLKFLQN---SMGVVPSPFDCWLV 248
T+ ++D++ + DDS + P+
Sbjct: 250 TRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGG 309
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
+ + ++ + H + +
Sbjct: 310 AMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPA 369
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
A ++ + + R E G L P P E L+R
Sbjct: 370 DQFPAQALACELYKVAGI--RAVE--IGSFLLGRDPKTGKQLPCPAE----------LLR 415
Query: 369 LSVGVEGYTDLIADLDQALRKACKV 393
L++ YT +D + V
Sbjct: 416 LTIPRATYTQ--THMDFIIEAFKHV 438
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 48.0 bits (113), Expect = 9e-07
Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 39 FKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSA- 96
F ++ +G S N+ + + A+ G + + ++
Sbjct: 45 FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 104
Query: 97 -------GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNT 144
GD+II + + + ++G E+ + L +E L T
Sbjct: 105 GNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKT 164
Query: 145 KMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLT 204
+++ I + +N L T + + + QH +LV + + D ++S
Sbjct: 165 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH 224
Query: 205 KYMNGH 210
K
Sbjct: 225 KLYGPT 230
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 47.4 bits (112), Expect = 2e-06
Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 24/235 (10%)
Query: 53 YSRSNNPTRRNLERCIASL--------EEAKHGLCYSSGLGAVTAVTHLLS---AGDHII 101
++ +N LE+ I L + ++ + + + LS
Sbjct: 94 FNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDA 153
Query: 102 SGDDVY--GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159
V Y F + + N + P + + +P NP +
Sbjct: 154 PESKVVAHAPFYPVFREQTKYFDKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLL 212
Query: 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGAT 218
AV+K + D + +Y DI+L++++K+ HS G
Sbjct: 213 -----RHAVIK---GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTG-HSGSRFGWA 263
Query: 219 VTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFL 273
+ D+S+ L + LK + +K + ++ F
Sbjct: 264 LIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG 318
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 46.3 bits (109), Expect = 4e-06
Identities = 37/244 (15%), Positives = 75/244 (30%), Gaps = 28/244 (11%)
Query: 64 LERCIASLEEAKHGLCYSS-----GLGAVTAVTHLLSA----GDHIISGDDVYGGTYRYF 114
L IA + +GLCY + G ++ +L+ A GD +I +
Sbjct: 72 LREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMV 131
Query: 115 AQVAPK---IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ V+ E + + I P TK++ P+NP V+ + A+ +
Sbjct: 132 KLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQV 191
Query: 172 H--PDILLVLDNTFLTAYYQK--------SLPWGVD--IVLYSLTKYMNGHSDVVMGATV 219
+ ++ D + Y + P + +V K + +G
Sbjct: 192 AVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM-TGWRVGFLA 250
Query: 220 TNDDSLQARLKFLQNSMGVVPSPF---DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESH 276
++A K +S V + + L + L +
Sbjct: 251 GPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM 310
Query: 277 PCVK 280
P ++
Sbjct: 311 PGLE 314
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 41.3 bits (95), Expect = 1e-04
Identities = 26/215 (12%), Positives = 53/215 (24%), Gaps = 11/215 (5%)
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFA 115
P + + + A + L ++ ++ + +Y
Sbjct: 45 TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE 104
Query: 116 QVAPKIGLEVDFVDLRKIENL--------IKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167
+ I L + + I P + DVK I+
Sbjct: 105 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 164
Query: 168 VVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227
V ++ LLV + G D ++ S K M + G ++ +
Sbjct: 165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI--GVMGMKEEWAEI 222
Query: 228 RLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEH 262
L+ + C + TL
Sbjct: 223 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHV 257
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 38.0 bits (87), Expect = 0.002
Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 19/203 (9%)
Query: 97 GDHIISGDDVYGGTYRYFAQVAPK---IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPT 153
GD I+ Y K + I+++ K I TK + + NP
Sbjct: 117 GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPN 176
Query: 154 NPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVD---------IVLYSLT 204
NP ++D K + ++ + + + + + IV+ L+
Sbjct: 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLS 236
Query: 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQN---SMGVVPSPFDCWLVTRGLKT----LPC 257
K + + ++ + ++ + + + P+ + GL L
Sbjct: 237 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKE 296
Query: 258 RLKEHERGSIEVAKFLESHPCVK 280
+K+ + + K L P +
Sbjct: 297 YMKKLKERRDYIYKRLNEIPGIS 319
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 37.6 bits (86), Expect = 0.002
Identities = 36/381 (9%), Positives = 90/381 (23%), Gaps = 63/381 (16%)
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYF-- 114
+ +L+ L + + G GA LL + + +F
Sbjct: 74 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT 133
Query: 115 -------------------AQVAPKIGLEVDFVDLRKIENLI-KYIKPNTKMVWIENPTN 154
A + D++K++ I ++ N + N
Sbjct: 134 TAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 193
Query: 155 PLMTVF----DVKAISAVVKQHPDILLVLD--NTFLTAYYQKSLP--------------W 194
++K + + KQH I +V+D AY+ K+
Sbjct: 194 SAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 252
Query: 195 GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT 254
+++ + ++ + +++ + + M +
Sbjct: 253 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMV 312
Query: 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314
E ++ L ++ V
Sbjct: 313 QGLEEGTEEEYLHYRIGQVKYL---------------GDRLREAGIPIQYPTGGHAVFVD 357
Query: 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK--ETRDALGITDNLVRLSVG 372
++ + A E+ + + T + +RL++
Sbjct: 358 CKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIA 417
Query: 373 VEGYTDLIADLDQALRKACKV 393
YT+ +D +
Sbjct: 418 RRVYTN--DHMDYIADALIGL 436
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 36.1 bits (82), Expect = 0.005
Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 9/195 (4%)
Query: 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLL--SAGDHIISGDDVYGGTYRY 113
+ P + LE L ++ + SS + L GD +I+ + T
Sbjct: 28 TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM 87
Query: 114 FAQVAPKIGLEVDFVDLRKI--ENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ + D + E++ I P TK + P + D+ AI A+ ++
Sbjct: 88 IVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAII---PVHYAGAPADLDAIYALGER 144
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231
+ ++ Y+ ++S + + G V D+ A
Sbjct: 145 YGIPVIEDAAHATGTSYKGRHIGARGTAIFSF--HAIKNITCAEGGIVVTDNPQFADKLR 202
Query: 232 LQNSMGVVPSPFDCW 246
G+ +D
Sbjct: 203 SLKFHGLGVDAWDRQ 217
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 33.6 bits (75), Expect = 0.040
Identities = 34/204 (16%), Positives = 63/204 (30%), Gaps = 16/204 (7%)
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFA 115
+PT LER A + L SG ++ GD +I D + Y A
Sbjct: 32 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGA 91
Query: 116 QVA---------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP----LMTVFDV 162
P +D D+RK P T ++ IEN N ++ + ++
Sbjct: 92 MAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 151
Query: 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222
K I + K+H + V + + V M S + +
Sbjct: 152 KEICTIAKEHG--INVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVV 209
Query: 223 DSLQARLKFLQNSMGVVPSPFDCW 246
+ ++ + + ++
Sbjct: 210 VGDRDFIERARKARKMLGGGMRQA 233
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
{Escherichia coli [TaxId: 562]}
Length = 233
Score = 28.8 bits (64), Expect = 1.0
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 125 VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL 184
+ V+++ I +L K + F VKA+ +K++P++ +D +
Sbjct: 33 FNEVNMKPIMDLRKQYGEAFEKRHGIRLG---FMSFYVKAVVEALKRYPEVNASIDGDDV 89
Query: 185 TAY 187
+
Sbjct: 90 VYH 92
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
Length = 384
Score = 27.8 bits (60), Expect = 2.2
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLL--SAGDHIISGDDVYGGT 110
+ R + ER A+ A H L ++G A+ ++ G +I + +
Sbjct: 28 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISS 87
Query: 111 YRYF 114
+
Sbjct: 88 SQAA 91
>d1lf6a2 b.30.5.5 (A:11-287) Bacterial glucoamylase, N-terminal
domain {Thermoanaerobacterium thermosaccharolyticum
[TaxId: 1517]}
Length = 277
Score = 27.1 bits (60), Expect = 3.3
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 359 ALGITDNLVRLSVGVEGYTDLIADLDQ 385
AL S+G D++ DLD+
Sbjct: 179 ALSSNIGWKGYSIGYYKVNDIMTDLDE 205
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the
N-terminal DNA recognition domain {Bacillus subtilis
[TaxId: 1423]}
Length = 51
Score = 24.6 bits (54), Expect = 4.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 352 IPKETRDALGITDN 365
IP E R LGI +
Sbjct: 18 IPIELRRTLGIAEK 31
>d1ulva4 b.30.5.5 (A:2-273) Glucodextranase, domain N {Arthrobacter
globiformis [TaxId: 1665]}
Length = 272
Score = 26.3 bits (58), Expect = 6.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 359 ALGITDNLVRLSVGVEGYTDLIADLDQ 385
AL + ++ G G +D DL
Sbjct: 169 ALVSSVGFGAVANGYVGTSDGWTDLAA 195
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 25.9 bits (56), Expect = 8.2
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 143 NTKMVWIENPTNPLMTV-FDVKAISAVVKQHPDILLVL--DNTFLTAYYQK 190
+++ +E P N M++ +D + IL D + + Y+Q
Sbjct: 2 EGRLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQV 52
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia
coli [TaxId: 562]}
Length = 159
Score = 25.5 bits (56), Expect = 9.0
Identities = 10/51 (19%), Positives = 15/51 (29%)
Query: 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA 381
+E L + E+ + E RDA I + Y L
Sbjct: 70 RMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLAT 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,516
Number of extensions: 66287
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 33
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)