BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12792
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++++ ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +S+ ++ L + K + + ++ L++ H+ K
Sbjct: 71 LRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-KV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQDTYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 35 GHIG------SAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRG 88
HIG + G+G K+ +T Q ++ ++ K+ L K DM+ R ++R
Sbjct: 1 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR------IERE 54
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHL-RSYKLYDIEIKYGLMQV 147
+S L LRHP I+ + ++ S ++ E N L ++ + K+ + E + Q+
Sbjct: 55 ISYLRLLRHPHIIKLYDVIK--SKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQI 112
Query: 148 GEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
+ + H K +H +L P N+++ H KI F S
Sbjct: 113 ISAVEYCHRH-KIVHRDLKPENLLLDEHLNVKIADFGLS 150
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 35 GHIG------SAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRG 88
HIG + G+G K+ +T Q ++ ++ K+ L K DM+ R ++R
Sbjct: 11 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR------IERE 64
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHL-RSYKLYDIEIKYGLMQV 147
+S L LRHP I+ + ++ S ++ E N L ++ + K+ + E + Q+
Sbjct: 65 ISYLRLLRHPHIIKLYDVIK--SKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQI 122
Query: 148 GEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
+ + H K +H +L P N+++ H KI F S
Sbjct: 123 ISAVEYCHRH-KIVHRDLKPENLLLDEHLNVKIADFGLS 160
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 35 GHIG------SAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRG 88
HIG + G+G K+ +T Q ++ ++ K+ L K DM+ R ++R
Sbjct: 5 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR------IERE 58
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHL-RSYKLYDIEIKYGLMQV 147
+S L LRHP I+ + ++ S ++ E N L ++ + K+ + E + Q+
Sbjct: 59 ISYLRLLRHPHIIKLYDVIK--SKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQI 116
Query: 148 GEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
+ + H K +H +L P N+++ H KI F S
Sbjct: 117 ISAVEYCHRH-KIVHRDLKPENLLLDEHLNVKIADFGLS 154
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 35 GHIG------SAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRG 88
HIG + G+G K+ +T Q ++ ++ K+ L K DM+ R ++R
Sbjct: 10 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGR------IERE 63
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHL-RSYKLYDIEIKYGLMQV 147
+S L LRHP I+ + ++ S ++ E N L ++ + K+ + E + Q+
Sbjct: 64 ISYLRLLRHPHIIKLYDVIK--SKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQI 121
Query: 148 GEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
+ + H K +H +L P N+++ H KI F S
Sbjct: 122 ISAVEYCHRH-KIVHRDLKPENLLLDEHLNVKIADFGLS 159
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC-----LDP----TRQLTPARDM 203
IH ++ P N+++ G KI F +S ELC L P R D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 18 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 71
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 72 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 130
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 131 IHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDL 190
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 191 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 247
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 248 QRPMLREVLEHPW 260
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 20 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 73
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 74 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 132
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 133 IHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 193 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 249
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 250 QRPMLREVLEHPW 262
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 16 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 69
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 70 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 128
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 129 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 188
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 189 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 245
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 246 QRPMLREVLEHPW 258
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 20 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 73
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 74 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 132
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 133 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 193 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 249
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 250 QRPMLREVLEHPW 262
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 29/169 (17%)
Query: 30 EYDITGHIGSAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGV 89
+Y+ G +G G++ K N+D V K+ LE D K+ ++ R +
Sbjct: 26 KYENLGLVGEGSYGMVMK-------CRNKDTGRIVAIKKFLESDDDKMVKK---IAMREI 75
Query: 90 SQLTRLRHPQIL----IVQHPLEESSLANVLGHT-----ENLPNPLPPHLRSYKLYDIEI 140
L +LRH ++ + + + + HT E PN L Y +
Sbjct: 76 KLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLD--------YQVVQ 127
Query: 141 KYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
KY L Q+ G+ F H+ IH ++ P NI+VS G K+ F F+R L
Sbjct: 128 KY-LFQIINGIGFCHS-HNIIHRDIKPENILVSQSGVVKLCDFGFARTL 174
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC--LD-------PTRQLTPARDM 203
IH ++ P N+++ G KI F +S +LC LD R D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT 194
++Y L Q+ GL ++H+ A+ IH +L P N++V+ + KI F +R LC P
Sbjct: 160 VRYFLYQLLRGLKYMHS-AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA 213
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 19 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 72
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 73 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 131
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 132 IHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 191
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 192 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 248
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 249 QRPMLREVLEHPW 261
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 26 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 85
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 86 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 138
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H NL N +V+H KI F +R++ L P R
Sbjct: 139 IADGMAYL-NAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 197
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 251
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P +RP
Sbjct: 252 DQPDNCPERVTDLMRMCWQFNPNMRP 277
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT 194
++Y L Q+ GL ++H+ A+ IH +L P N++V+ + KI F +R LC P
Sbjct: 161 VRYFLYQLLRGLKYMHS-AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA 214
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 20 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 73
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 74 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 132
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 133 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 193 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 249
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 250 QRPMLREVLEHPW 262
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 20 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 73
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 74 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 132
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 133 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 193 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 249
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 250 QRPMLREVLEHPW 262
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 23/161 (14%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT 194
L + +I L ++ +GL++LH++ KKIH ++ N+++S HG K+ F + +L
Sbjct: 101 LDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 159
Query: 195 RQLTPARDMFSLGATIC--AVYNNGKSIISSDQNITFSELGSANINSARL---------- 242
++ T F + + + Y++ I S IT EL + L
Sbjct: 160 KRNTFVGTPFWMAPEVIKQSAYDSKADIWS--LGITAIELARGEPPHSELHPMKVLFLIP 217
Query: 243 --------SDIDEGLRELVKMMLNTSPELRPDNHDFLKSPY 275
+ + L+E V+ LN P RP + LK +
Sbjct: 218 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF 258
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 20 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 73
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 74 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 132
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 133 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 193 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 249
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 250 QRPMLREVLEHPW 262
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC--LD-------PTRQLTPARDM 203
IH ++ P N+++ G KI F +S +LC LD R D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 21 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 75 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 133
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 134 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 193
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 194 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 250
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 251 QRPMLREVLEHPW 263
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 27 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 86
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 87 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 139
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H NL N +V+H KI F +R++ L P R
Sbjct: 140 IADGMAYL-NAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 198
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 199 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 252
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P +RP
Sbjct: 253 DQPDNCPERVTDLMRMCWQFNPNMRP 278
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 22 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 75
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 76 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 134
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS------RELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F +S R L T P D+
Sbjct: 135 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDL 194
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 195 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 251
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 252 QRPXLREVLEHPW 264
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 17 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 70
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 71 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 129
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 130 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDL 189
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 190 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 246
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 247 QRPMLREVLEHPW 259
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 20 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 73
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 74 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 132
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC-----LDP----TRQLTPARDM 203
IH ++ P N+++ G KI F +S +LC L P R D+
Sbjct: 133 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDL 192
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 193 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 249
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 250 QRPMLREVLEHPW 262
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 18 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 71
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 72 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 130
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC--LD-------PTRQLTPARDM 203
IH ++ P N+++ G KI F +S +LC LD R D+
Sbjct: 131 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 190
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 191 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 247
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 248 QRPMLREVLEHPW 260
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 22 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 75
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 76 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 134
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 135 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 194
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 195 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 251
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 252 QRPMLREVLEHPW 264
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 14 GKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 67
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 68 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 126
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 127 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 186
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 187 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 243
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 244 QRPMLREVLEHPW 256
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 23/161 (14%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT 194
L + +I L ++ +GL++LH++ KKIH ++ N+++S HG K+ F + +L
Sbjct: 121 LDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 179
Query: 195 RQLTPARDMFSLGATIC--AVYNNGKSIISSDQNITFSELGSANINSARL---------- 242
++ T F + + + Y++ I S IT EL + L
Sbjct: 180 KRNTFVGTPFWMAPEVIKQSAYDSKADIWS--LGITAIELARGEPPHSELHPMKVLFLIP 237
Query: 243 --------SDIDEGLRELVKMMLNTSPELRPDNHDFLKSPY 275
+ + L+E V+ LN P RP + LK +
Sbjct: 238 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF 278
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 43 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 96
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 97 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 155
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 156 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 215
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 216 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 272
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 273 QRPMLREVLEHPW 285
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 85 VKRGVSQLTRLRHPQILIVQHPLE---ESSLANVLGHTENLPNPLPPHLRSYKLYDIEIK 141
V + ++ L +L HP ++ + L+ E L V P P L+ L + + +
Sbjct: 83 VYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP--LSEDQAR 140
Query: 142 YGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL------------ 189
+ + +G+ +LH K IH ++ P N++V G KI F S E
Sbjct: 141 FYFQDLIKGIEYLHY-QKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVG 199
Query: 190 --------CLDPTRQLTPAR--DMFSLGATI-CAVYNNGKSIISSDQNIT--FSELGSAN 236
L TR++ + D++++G T+ C V+ + D+ I S++ S
Sbjct: 200 TPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFM---DERIMCLHSKIKSQA 256
Query: 237 INSARLSDIDEGLRELVKMMLNTSPELR 264
+ DI E L++L+ ML+ +PE R
Sbjct: 257 LEFPDQPDIAEDLKDLITRMLDKNPESR 284
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 19 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 72
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 73 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 131
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 132 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDL 191
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 192 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 248
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 249 QRPMLREVLEHPW 261
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 22 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 75
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 76 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 134
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC--LD-------PTRQLTPARDM 203
IH ++ P N+++ G KI F +S +LC LD R D+
Sbjct: 135 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDL 194
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 195 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 251
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 252 QRPMLREVLEHPW 264
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 34 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 87
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 88 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 146
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 147 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDL 206
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 207 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 263
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 264 QRPMLREVLEHPW 276
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 108/260 (41%), Gaps = 42/260 (16%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTR-----L 95
G+G +++ G T Q +I +++ + E +++E + S +T+ L
Sbjct: 32 GKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVTKYYGSYL 91
Query: 96 RHPQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLH 155
+ ++ I+ L S ++L R+ + +I L ++ +GL++LH
Sbjct: 92 KGSKLWIIMEYLGGGSALDLL--------------RAGPFDEFQIATMLKEILKGLDYLH 137
Query: 156 NDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLTPARDMFSLGATIC--AV 213
++ KKIH ++ N+++S G K+ F + +L ++ T F + + +
Sbjct: 138 SE-KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSA 196
Query: 214 YNNGKSIISSDQNITFSELG-----SANINSAR-------------LSDIDEGLRELVKM 255
Y++ I S IT EL +++++ R + D + +E +
Sbjct: 197 YDSKADIWS--LGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLVGDFTKSFKEFIDA 254
Query: 256 MLNTSPELRPDNHDFLKSPY 275
LN P RP + LK +
Sbjct: 255 CLNKDPSFRPTAKELLKHKF 274
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 18 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 71
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 72 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 130
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR-----------DM 203
IH ++ P N+++ G KI F + SR L T P D+
Sbjct: 131 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDL 190
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 191 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 247
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 248 QRPMLREVLEHPW 260
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 26 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 85
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 86 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 138
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H +L N +V+H KI F +R++ L P R
Sbjct: 139 IADGMAYL-NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGKGLLPVR 197
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 251
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P++RP
Sbjct: 252 DQPDNCPERVTDLMRMCWQFNPKMRP 277
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 26 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 85
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 86 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 138
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H +L N +V+H KI F +R++ L P R
Sbjct: 139 IADGMAYL-NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 197
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 251
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P++RP
Sbjct: 252 DQPDNCPERVTDLMRMCWQFNPKMRP 277
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 43 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 96
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + K + + ++ L++ H+ +
Sbjct: 97 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RV 155
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS--------RELC-----LDPT----RQLTPARDM 203
IH ++ P N+++ G KI F +S +LC L P R D+
Sbjct: 156 IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDL 215
Query: 204 FSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+SLG +C + GK ++ T+ + + EG R+L+ +L +P
Sbjct: 216 WSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHNPS 272
Query: 263 LRPDNHDFLKSPY 275
RP + L+ P+
Sbjct: 273 QRPMLREVLEHPW 285
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 26 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 85
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 86 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 138
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H +L N +V+H KI F +R++ L P R
Sbjct: 139 IADGMAYL-NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 197
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 251
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P++RP
Sbjct: 252 DQPDNCPERVTDLMRMCWQFNPKMRP 277
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 22 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 75
Query: 101 LIVQHPLEESSLANVLGHTENLP-NPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
L + +++ ++ E P + L+ +D + + ++ L++ H+
Sbjct: 76 LRLYGYFHDATRVYLI--LEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCHSK- 132
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR----------- 201
+ IH ++ P N+++ G KI F + SR L T P
Sbjct: 133 RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKV 192
Query: 202 DMFSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTS 260
D++SLG +C + GK ++ T+ + + EG R+L+ +L +
Sbjct: 193 DLWSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHN 249
Query: 261 PELRPDNHDFLKSPY 275
P RP + L+ P+
Sbjct: 250 PSQRPMLREVLEHPW 264
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 25 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 84
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 85 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 137
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H +L N +V+H KI F +R++ L P R
Sbjct: 138 IADGMAYL-NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 196
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 197 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 250
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P++RP
Sbjct: 251 DQPDNCPERVTDLMRMCWQFNPKMRP 276
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 23 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 82
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 83 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 135
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H +L N +V+H KI F +R++ L P R
Sbjct: 136 IADGMAYL-NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 194
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 195 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 248
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P++RP
Sbjct: 249 DQPDNCPERVTDLMRMCWQFNPKMRP 274
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 22 GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ------LRREVEIQSHLRHPNI 75
Query: 101 LIVQHPLEESSLANVLGHTENLP-NPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
L + +++ ++ E P + L+ +D + + ++ L++ H+
Sbjct: 76 LRLYGYFHDATRVYLI--LEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCHSK- 132
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDF------SRELCLDPTRQLTPAR----------- 201
+ IH ++ P N+++ G KI F + SR L T P
Sbjct: 133 RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKV 192
Query: 202 DMFSLGATICAVYNNGKSIISSDQ-NITFSELGSANINSARLSDIDEGLRELVKMMLNTS 260
D++SLG +C + GK ++ T+ + + EG R+L+ +L +
Sbjct: 193 DLWSLG-VLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF--VTEGARDLISRLLKHN 249
Query: 261 PELRPDNHDFLKSPY 275
P RP + L+ P+
Sbjct: 250 PSQRPMLREVLEHPW 264
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 55/266 (20%)
Query: 41 GQGLLWKIYSGTKRST-NQDASIFVLEKRQLEKLDMKLREEYF--TFVKRGVS--QLTRL 95
GQG +Y G R +A V K E ++ R E+ V +G + + RL
Sbjct: 26 GQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRL 85
Query: 96 ------RHPQILIVQ---HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQ 146
P +++++ H +S L ++ EN P PP L+ E+ +
Sbjct: 86 LGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ-------EMIQMAAE 138
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-----------CLDPTR 195
+ +G+ +L N K +H +L N +V+H KI F +R++ L P R
Sbjct: 139 IADGMAYL-NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 197
Query: 196 QLTP----------ARDMFSLGAT---ICAVYNNGKSIISSDQNITFSELGSANINSARL 242
+ P + DM+S G I ++ +S++Q + F ++ L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV------MDGGYL 251
Query: 243 SDID---EGLRELVKMMLNTSPELRP 265
D E + +L++M +P +RP
Sbjct: 252 DQPDNCPERVTDLMRMCWQFNPNMRP 277
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT 194
L + +I L ++ +GL++LH++ KKIH ++ N+++S HG K+ F + +L
Sbjct: 101 LDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 159
Query: 195 RQLTPARDMFSLGATIC--AVYNNGKSIISSDQNITFSELGSANINSARL---------- 242
++ F + + + Y++ I S IT EL + L
Sbjct: 160 KRNXFVGTPFWMAPEVIKQSAYDSKADIWS--LGITAIELARGEPPHSELHPMKVLFLIP 217
Query: 243 --------SDIDEGLRELVKMMLNTSPELRPDNHDFLKSPY 275
+ + L+E V+ LN P RP + LK +
Sbjct: 218 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF 258
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT 194
L + +I L ++ +GL++LH++ KKIH ++ N+++S HG K+ F + +L
Sbjct: 116 LDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 174
Query: 195 RQLTPARDMFSLGATIC--AVYNNGKSIISSDQNITFSELGSANINSARL---------- 242
++ F + + + Y++ I S IT EL + L
Sbjct: 175 KRNXFVGTPFWMAPEVIKQSAYDSKADIWS--LGITAIELARGEPPHSELHPMKVLFLIP 232
Query: 243 --------SDIDEGLRELVKMMLNTSPELRPDNHDFLKSPY 275
+ + L+E V+ LN P RP + LK +
Sbjct: 233 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF 273
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 25/191 (13%)
Query: 38 GSAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRH 97
GS G+ +L K + +D +V+++ + ++ K REE +R V+ L ++H
Sbjct: 35 GSFGKAILVK--------STEDGRQYVIKEINISRMSSKEREE----SRREVAVLANMKH 82
Query: 98 PQILIVQHPLEE-SSLANVLGHTENLPNPLPPHLRSYK---LYDIEIKYGLMQVGEGLNF 153
P I+ + EE SL V+ + E L + + K + +I +Q+ L
Sbjct: 83 PNIVQYRESFEENGSLYIVMDYCEG--GDLFKRINAQKGVLFQEDQILDWFVQICLALKH 140
Query: 154 LHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLTPA--RDMFSLGATIC 211
+H D K +H ++ NI ++ G ++ F +R L+ T +L A + L IC
Sbjct: 141 VH-DRKILHRDIKSQNIFLTKDGTVQLGDFGIAR--VLNSTVELARACIGTPYYLSPEIC 197
Query: 212 --AVYNNGKSI 220
YNN I
Sbjct: 198 ENKPYNNKSDI 208
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 29/167 (17%)
Query: 30 EYDITGHIGSAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGV 89
+Y+ G IG G+++K N+D V K+ LE D + ++ R +
Sbjct: 4 KYEKIGKIGEGSYGVVFK-------CRNRDTGQIVAIKKFLESEDDPVIKK---IALREI 53
Query: 90 SQLTRLRHPQILIVQ---------HPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEI 140
L +L+HP ++ + H + E VL + +P HL +
Sbjct: 54 RMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHL---------V 104
Query: 141 KYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
K Q + +NF H IH ++ P NI+++ H K+ F F+R
Sbjct: 105 KSITWQTLQAVNFCHK-HNCIHRDVKPENILITKHSVIKLCDFGFAR 150
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 40/170 (23%)
Query: 36 HIG------SAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGV 89
HIG + G+G K+ T T Q ++ + ++ L+K DM +R V+R +
Sbjct: 7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMR------VEREI 60
Query: 90 SQLTRLRHPQIL----IVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLM 145
S L LRHP I+ ++ P + + G +L+D ++ M
Sbjct: 61 SYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGG---------------ELFDYIVEKKRM 105
Query: 146 QVGEGLNFLH---------NDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
EG F + K +H +L P N+++ + KI F S
Sbjct: 106 TEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLS 155
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G ++ R T Q+ ++ V+ K + D + + R V L +L HP I
Sbjct: 31 GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT-------STILREVELLKKLDHPNI 83
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
+ + LE+SS ++G ++ + + + + QV G+ ++H
Sbjct: 84 MKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK-HNI 142
Query: 161 IHHNLCPHNIIV-SHHGAWKIFGFDFSRELCLDPTRQLTPARD 202
+H +L P NI++ S I DF C +Q T +D
Sbjct: 143 VHRDLKPENILLESKEKDCDIKIIDFGLSTCF---QQNTKMKD 182
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI GF +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILGFGLAR 173
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 99/260 (38%), Gaps = 36/260 (13%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G ++ R T Q+ ++ V+ K + D + + R V L +L HP I
Sbjct: 31 GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT-------STILREVELLKKLDHPNI 83
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
+ + LE+SS ++G ++ + + + + QV G+ ++H
Sbjct: 84 MKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK-HNI 142
Query: 161 IHHNLCPHNIIV-SHHGAWKIFGFDFSRELCLDPTRQLTPARDMFSLGATI--------- 210
+H +L P NI++ S I DF C +Q T +D I
Sbjct: 143 VHRDLKPENILLESKEKDCDIKIIDFGLSTCF---QQNTKMKDRIGTAYYIAPEVLRGTY 199
Query: 211 ---CAVYNNGKSII-----------SSDQNI-TFSELGSANINSARLSDIDEGLRELVKM 255
C V++ G + ++ +I E G + + I + ++L++
Sbjct: 200 DEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRK 259
Query: 256 MLNTSPELRPDNHDFLKSPY 275
ML P LR L+ P+
Sbjct: 260 MLTFHPSLRITATQCLEHPW 279
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 99/260 (38%), Gaps = 36/260 (13%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G ++ R T Q+ ++ V+ K + D + + R V L +L HP I
Sbjct: 31 GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT-------STILREVELLKKLDHPNI 83
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
+ + LE+SS ++G ++ + + + + QV G+ ++H
Sbjct: 84 MKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK-HNI 142
Query: 161 IHHNLCPHNIIV-SHHGAWKIFGFDFSRELCLDPTRQLTPARDMFSLGATI--------- 210
+H +L P NI++ S I DF C +Q T +D I
Sbjct: 143 VHRDLKPENILLESKEKDCDIKIIDFGLSTCF---QQNTKMKDRIGTAYYIAPEVLRGTY 199
Query: 211 ---CAVYNNGKSII-----------SSDQNI-TFSELGSANINSARLSDIDEGLRELVKM 255
C V++ G + ++ +I E G + + I + ++L++
Sbjct: 200 DEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRK 259
Query: 256 MLNTSPELRPDNHDFLKSPY 275
ML P LR L+ P+
Sbjct: 260 MLTFHPSLRITATQCLEHPW 279
>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
Length = 432
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 61/167 (36%), Gaps = 37/167 (22%)
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVS---HHGAWKI----FGF---------DFSR 187
L Q GL LH+ +H +L PHNI++S HG K FG FSR
Sbjct: 124 LQQTTSGLAHLHS-LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSR 182
Query: 188 E--------------LCLDPTRQLTPARDMFSLGATICAVYNNGK----SIISSDQNITF 229
L D T D+FS G V + G + NI
Sbjct: 183 RSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILL 242
Query: 230 SELGSANINSARLSDIDEGLRELVKMMLNTSPELRPDNHDFLKSPYF 276
++ + D+ REL++ M+ P+ RP LK P+F
Sbjct: 243 GACSLDCLHPEKHEDVI--ARELIEKMIAMDPQKRPSAKHVLKHPFF 287
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 399 LPLLYRALESDSQQIQELCLSILPSLANLIEYPAMKNALLPRIKRLCISTSHISVRVNCL 458
LP + L+ D+ Q L+ LP L L+EY N L + L S +SVR N L
Sbjct: 118 LPASLKHLDVDNNQ-----LTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQL 172
Query: 459 VCLGKLIEYLDKWLVLDEVLPFLPQIPSRD 488
L +L E L+ V +L LP +P R+
Sbjct: 173 TFLPELPESLEALDVSTNLLESLPAVPVRN 202
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++S KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F R
Sbjct: 117 VKSQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDSELKILDFGLCR 173
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 127 PPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
PP L + + D+ + Q GL+FLH + +H +L P NI+V+ G K+ F +
Sbjct: 106 PPGLPAETIKDL-----MRQFLRGLDFLHANCI-VHRDLKPENILVTSGGTVKLADFGLA 159
Query: 187 R----ELCLDP 193
R ++ LDP
Sbjct: 160 RIYSYQMALDP 170
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
IK + Q+ GL+FLH+ + +H +L P NI+V+ G K+ F +R
Sbjct: 122 IKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLAR 168
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
IK + Q+ GL+FLH+ + +H +L P NI+V+ G K+ F +R
Sbjct: 122 IKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLAR 168
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ ++ VL K QLEK ++ + ++R + + LRHP I
Sbjct: 23 GKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ------LRREIEIQSHLRHPNI 76
Query: 101 LIVQHPLEESSLANVLGHTENLP-NPLPPHLRSYKLYDIEIKYGLMQ-VGEGLNFLHNDA 158
L + + + ++ E P L L+ + +D + M+ + + L++ H +
Sbjct: 77 LRMYNYFHDRKRIYLM--LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCH-ER 133
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
K IH ++ P N+++ + G KI F +S
Sbjct: 134 KVIHRDIKPENLLMGYKGELKIADFGWS 161
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQL-EKLDMK--LREEYFTFVKRGVSQLTRLRH 97
G+G ++ + T Q+ ++ V+ KRQ+ +K D + LRE V L +L H
Sbjct: 35 GKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE---------VQLLKQLDH 85
Query: 98 PQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHND 157
P I+ + E+ ++G + + +++ + QV G+ ++H +
Sbjct: 86 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 145
Query: 158 AKKIHHNLCPHNIIV 172
K +H +L P N+++
Sbjct: 146 -KIVHRDLKPENLLL 159
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G + +++ ++D ++ VL + D+ ++ +R L HP I
Sbjct: 21 GFGGMSEVHLARDLRLHRDVAVKVL------RADLARDPSFYLRFRREAQNAAALNHPAI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLP----PHLRSYKLYDIEIKYGLM----------Q 146
+ V G E PLP ++ L DI G M
Sbjct: 75 VAVY----------ATGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ LNF H + IH ++ P NI++S A K+ F +R +
Sbjct: 125 ACQALNFSHQNGI-IHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
IK + Q+ GL+FLH+ + +H +L P NI+V+ G K+ F +R
Sbjct: 122 IKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVTSSGQIKLADFGLAR 168
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 37/202 (18%)
Query: 99 QILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDA 158
QI ++ +E L ++L ++ PNP+ K+ +V L +LH+
Sbjct: 80 QIFMIMDYIEGGELFSLLRKSQRFPNPVA-------------KFYAAEVCLALEYLHS-K 125
Query: 159 KKIHHNLCPHNIIVSHHGAWKI--FGF-----DFSRELCLDP---------TRQLTPARD 202
I+ +L P NI++ +G KI FGF D + LC P T+ + D
Sbjct: 126 DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAPEVVSTKPYNKSID 185
Query: 203 MFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLSDIDEGLRELVKMMLNTSPE 262
+S G I + S+ T+ ++ +A + +E +++L+ ++
Sbjct: 186 WWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPF--FNEDVKDLLSRLITRDLS 243
Query: 263 LRPDN-----HDFLKSPYFDDI 279
R N D P+F ++
Sbjct: 244 QRLGNLQNGTEDVKNHPWFKEV 265
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G + +++ ++D ++ VL + D+ ++ +R L HP I
Sbjct: 21 GFGGMSEVHLARDLRDHRDVAVKVL------RADLARDPSFYLRFRREAQNAAALNHPAI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLP----PHLRSYKLYDIEIKYGLM----------Q 146
+ V G E PLP ++ L DI G M
Sbjct: 75 VAVYD----------TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ LNF H + IH ++ P NI++S A K+ F +R +
Sbjct: 125 ACQALNFSHQNGI-IHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQL-EKLDMK--LREEYFTFVKRGVSQLTRLRH 97
G+G ++ + T Q+ ++ V+ KRQ+ +K D + LRE V L +L H
Sbjct: 41 GKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE---------VQLLKQLDH 91
Query: 98 PQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHND 157
P I+ + E+ ++G + + +++ + QV G+ ++H +
Sbjct: 92 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 151
Query: 158 AKKIHHNLCPHNIIV 172
K +H +L P N+++
Sbjct: 152 -KIVHRDLKPENLLL 165
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G + +++ ++D ++ VL + D+ ++ +R L HP I
Sbjct: 21 GFGGMSEVHLARDLRDHRDVAVKVL------RADLARDPSFYLRFRREAQNAAALNHPAI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLP----PHLRSYKLYDIEIKYGLM----------Q 146
+ V G E PLP ++ L DI G M
Sbjct: 75 VAVYD----------TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ LNF H + IH ++ P NI++S A K+ F +R +
Sbjct: 125 ACQALNFSHQNGI-IHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ ++ VL K QLEK ++ + ++R + + LRHP I
Sbjct: 24 GKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ------LRREIEIQSHLRHPNI 77
Query: 101 LIVQHPLEESSLANVLGHTENLP-NPLPPHLRSYKLYDIEIKYGLMQ-VGEGLNFLHNDA 158
L + + + ++ E P L L+ + +D + M+ + + L++ H +
Sbjct: 78 LRMYNYFHDRKRIYLM--LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCH-ER 134
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
K IH ++ P N+++ + G KI F +S
Sbjct: 135 KVIHRDIKPENLLMGYKGELKIADFGWS 162
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y ++ ++ VL K QLEK ++ + ++R + + LRHP I
Sbjct: 23 GKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ------LRREIEIQSHLRHPNI 76
Query: 101 LIVQHPLEESSLANVLGHTENLP-NPLPPHLRSYKLYDIEIKYGLMQ-VGEGLNFLHNDA 158
L + + + ++ E P L L+ + +D + M+ + + L++ H +
Sbjct: 77 LRMYNYFHDRKRIYLM--LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCH-ER 133
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
K IH ++ P N+++ + G KI F +S
Sbjct: 134 KVIHRDIKPENLLMGYKGELKIADFGWS 161
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G + +++ ++D ++ VL + D+ ++ +R L HP I
Sbjct: 21 GFGGMSEVHLARDLRDHRDVAVKVL------RADLARDPSFYLRFRREAQNAAALNHPAI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLP----PHLRSYKLYDIEIKYGLM----------Q 146
+ V G E PLP ++ L DI G M
Sbjct: 75 VAVYD----------TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ LNF H + IH ++ P NI++S A K+ F +R +
Sbjct: 125 ACQALNFSHQNGI-IHRDVKPANILISATNAVKVVDFGIARAIA 167
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 8 KSTVTSTVNQISSVLPGNPVTREYDITGHIGSAGQGLLWKIYSGTKRSTNQDASIFVLEK 67
K VN+ + LP + Y H+GS G + S + + EK
Sbjct: 8 KGFYKQDVNKTAWELP-----KTYVSPTHVGSGAYG---SVCSAIDKRSG--------EK 51
Query: 68 RQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQ------ILIVQHPLEESSLANVLGHTEN 121
++KL + E F KR +L L+H Q +L V P SSL N
Sbjct: 52 VAIKKLSRPFQSE--IFAKRAYRELLLLKHMQHENVIGLLDVFTP--ASSLRNFYDFYLV 107
Query: 122 LP--NPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWK 179
+P + K + +I+Y + Q+ +GL ++H+ A +H +L P N+ V+ K
Sbjct: 108 MPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHS-AGVVHRDLKPGNLAVNEDCELK 166
Query: 180 IFGFDFSR 187
I F +R
Sbjct: 167 ILDFGLAR 174
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQL-EKLDMK--LREEYFTFVKRGVSQLTRLRH 97
G+G ++ + T Q+ ++ V+ KRQ+ +K D + LRE V L +L H
Sbjct: 59 GKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE---------VQLLKQLDH 109
Query: 98 PQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHND 157
P I+ + E+ ++G + + +++ + QV G+ ++H +
Sbjct: 110 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 169
Query: 158 AKKIHHNLCPHNIIV 172
K +H +L P N+++
Sbjct: 170 -KIVHRDLKPENLLL 183
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQL-EKLDMK--LREEYFTFVKRGVSQLTRLRH 97
G+G ++ + T Q+ ++ V+ KRQ+ +K D + LRE V L +L H
Sbjct: 58 GKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE---------VQLLKQLDH 108
Query: 98 PQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHND 157
P I+ + E+ ++G + + +++ + QV G+ ++H +
Sbjct: 109 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 168
Query: 158 AKKIHHNLCPHNIIV 172
K +H +L P N+++
Sbjct: 169 -KIVHRDLKPENLLL 182
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 33/161 (20%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G ++ ++ I + + E+++ LRE V+ + RLRHP I
Sbjct: 46 GAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLRE---------VAIMKRLRHPNI 96
Query: 101 L-------------IVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQV 147
+ IV L SL +L H L R YD V
Sbjct: 97 VLFMGAVTQPPNLSIVTEYLSRGSLYRLL-HKSGAREQLDERRRLSMAYD---------V 146
Query: 148 GEGLNFLHN-DAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+G+N+LHN + +H NL N++V K+ F SR
Sbjct: 147 AKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G + +++ ++D ++ VL + D+ ++ +R L HP I
Sbjct: 21 GFGGMSEVHLARDLRLHRDVAVKVL------RADLARDPSFYLRFRREAQNAAALNHPAI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLP----PHLRSYKLYDIEIKYGLM----------Q 146
+ V G E PLP ++ L DI G M
Sbjct: 75 VAVYD----------TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ LNF H + IH ++ P NI++S A K+ F +R +
Sbjct: 125 ACQALNFSHQNGI-IHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 119 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDSELKILDFGLAR 175
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 123 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDSELKILDFGLAR 179
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP----------- 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 151 FQVAKGMEFLAS-RKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLP 209
Query: 194 ----------TRQLTPARDMFSLGATICAVYNNGKS 219
R T D++S G + +++ G S
Sbjct: 210 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 245
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKXQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDXELKILDFGLAR 173
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 122 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDXELKILDFGLAR 178
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 34/196 (17%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G K+ G + T ++ +L ++++ LD+ + +KR + L RHP I
Sbjct: 20 GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGK------IKREIQNLKLFRHPHI 73
Query: 101 L----IVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHN 156
+ ++ P + + + E L + + H R + ++E + Q+ +++ H
Sbjct: 74 IKLYQVISTPTDFFMVMEYVSGGE-LFDYICKHGR---VEEMEARRLFQQILSAVDYCHR 129
Query: 157 DAKKIHHNLCPHNIIVSHHGAWKIFGF---------DFSRELCLDPTRQ----------L 197
+H +L P N+++ H KI F +F R+ C P
Sbjct: 130 HMV-VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRDSCGSPNYAAPEVISGRLYA 188
Query: 198 TPARDMFSLGATICAV 213
P D++S G + A+
Sbjct: 189 GPEVDIWSCGVILYAL 204
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G + +++ ++D ++ VL + D+ ++ +R L HP I
Sbjct: 38 GFGGMSEVHLARDLRLHRDVAVKVL------RADLARDPSFYLRFRREAQNAAALNHPAI 91
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLP----PHLRSYKLYDIEIKYGLM----------Q 146
+ V G E PLP ++ L DI G M
Sbjct: 92 VAVYD----------TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 141
Query: 147 VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ LNF H + IH ++ P NI++S A K+ F +R +
Sbjct: 142 ACQALNFSHQNGI-IHRDVKPANIMISATNAVKVMDFGIARAIA 184
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 122 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDXELKILDFGLAR 178
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP----------- 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 155 FQVAKGMEFLAS-RKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLP 213
Query: 194 ----------TRQLTPARDMFSLGATICAVYNNGKS 219
R T D++S G + +++ G S
Sbjct: 214 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 249
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 124 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 124 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 128 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDXELKILDFGLAR 184
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKXQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 124 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT---------- 194
MQ+ +G+++L D + +H +L N++V KI F +R L +D T
Sbjct: 126 MQIAKGMSYLE-DVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVP 184
Query: 195 -----------RQLTPARDMFSLGATICAVYNNG 217
R+ T D++S G T+ + G
Sbjct: 185 IKWMALESILRRRFTHQSDVWSYGVTVWELMTFG 218
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 119 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 175
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 122 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 178
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 116 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 172
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 124 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 119 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 175
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 129 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 185
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 129 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 185
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT--------- 194
L +G G+ +L +D +H +L NI+V+ + K+ F SR L DP
Sbjct: 137 LRGIGSGMKYL-SDMSAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGK 195
Query: 195 -------------RQLTPARDMFSLGATICAVYNNGK 218
R+ T A D++S G + V + G+
Sbjct: 196 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE 232
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 129 HLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
H R + + E +Y + Q +G+ +LHN+ + IH +L N+ ++ KI F + +
Sbjct: 133 HKRRKAVTEPEARYFMRQTIQGVQYLHNN-RVIHRDLKLGNLFLNDDMDVKIGDFGLATK 191
Query: 189 LCLDPTRQLTPAR-------------------DMFSLGATICAVYNNGKSIISSDQNITF 229
+ D R+ T D++SLG + + +S T+
Sbjct: 192 IEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY 251
Query: 230 SELGSANINSARLSDIDEGLRELVKMMLNTSPELRPDNHDFLKSPYF 276
+ + R I+ L++ ML+ P LRP + L +F
Sbjct: 252 IRIKKNEYSVPR--HINPVASALIRRMLHADPTLRPSVAELLTDEFF 296
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 128 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 184
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 129 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 185
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 114 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 170
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 122 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 178
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 123 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 179
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 140 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 196
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 140 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 196
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 114 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 170
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 119 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 175
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 113 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 137 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 193
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 136 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 192
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 127 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 183
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSYK-LYDIEIKYGLMQ 146
S + + HP I+ ++ + LA ++ TE + N L LR++ + I G+++
Sbjct: 101 ASIMGQFDHPNIIRLEGVVTRGRLAMIV--TEYMENGSLDTFLRTHDGQFTIMQLVGMLR 158
Query: 147 -VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLT 198
VG G+ +L +D +H +L N++V + K+ F SR L DP T
Sbjct: 159 GVGAGMRYL-SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYT 210
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP----------- 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 151 FQVAKGMEFLAS-RKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 209
Query: 194 ----------TRQLTPARDMFSLGATICAVYNNGKS 219
R T D++S G + +++ G S
Sbjct: 210 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 245
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G K+ G T ++ +L ++++ LD+ + ++R + L RHP I
Sbjct: 25 GVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGK------IRREIQNLKLFRHPHI 78
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
+ + + S ++ + ++ +L + E + Q+ G+++ H
Sbjct: 79 IKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMV- 137
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS 186
+H +L P N+++ H KI F S
Sbjct: 138 VHRDLKPENVLLDAHMNAKIADFGLS 163
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 137 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 193
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSYK-LYDIEIKYGLMQ 146
S + + HP I+ ++ + LA ++ TE + N L LR++ + I G+++
Sbjct: 101 ASIMGQFDHPNIIRLEGVVTRGRLAMIV--TEYMENGSLDTFLRTHDGQFTIMQLVGMLR 158
Query: 147 -VGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLT 198
VG G+ +L +D +H +L N++V + K+ F SR L DP T
Sbjct: 159 GVGAGMRYL-SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXT 210
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 115 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 171
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 127 PPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
PP L + + D+ + Q GL+FLH + +H +L P NI+V+ G K+ F +
Sbjct: 106 PPGLPAETIKDL-----MRQFLRGLDFLHANCI-VHRDLKPENILVTSGGTVKLADFGLA 159
Query: 187 R 187
R
Sbjct: 160 R 160
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 127 PPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
PP L + + D+ + Q GL+FLH + +H +L P NI+V+ G K+ F +
Sbjct: 114 PPGLPAETIKDL-----MRQFLRGLDFLHANCI-VHRDLKPENILVTSGGTVKLADFGLA 167
Query: 187 R 187
R
Sbjct: 168 R 168
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 137 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 193
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT--------- 194
L +G G+ +L +D +H +L NI+V+ + K+ F SR L DP
Sbjct: 122 LRGIGSGMKYL-SDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGK 180
Query: 195 -------------RQLTPARDMFSLGATICAVYNNGK 218
R+ T A D++S G + V + G+
Sbjct: 181 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE 217
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 113 VKCAKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 107 LEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLC 166
+EE SL++V E P L + + + I Y QV +G+ FL + K IH +L
Sbjct: 173 VEEKSLSDV--EEEEAPEDL---YKDFLTLEHLICYSF-QVAKGMEFLAS-RKCIHRDLA 225
Query: 167 PHNIIVSHHGAWKIFGFDFSRELCLDP 193
NI++S KI F +R++ DP
Sbjct: 226 ARNILLSEKNVVKICDFGLARDIYKDP 252
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 134 KLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 150 KLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 202
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 113 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
++S L D +++ + Q+ GL ++H+ A IH +L P N+ V+ +I F +R+
Sbjct: 123 VKSQALSDEHVQFLVYQLLRGLKYIHS-AGIIHRDLKPSNVAVNEDSELRILDFGLARQ 180
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 113 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 127 PPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
PP L + + D+ + Q GL+FLH + +H +L P NI+V+ G K+ F +
Sbjct: 106 PPGLPAETIKDL-----MRQFLRGLDFLHANCI-VHRDLKPENILVTSGGTVKLADFGLA 159
Query: 187 R 187
R
Sbjct: 160 R 160
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 136 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 192
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G K+ G + T ++ +L ++++ LD+ + +KR + L RHP I
Sbjct: 20 GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGK------IKREIQNLKLFRHPHI 73
Query: 101 L----IVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHN 156
+ ++ P + + + E L + + H R + ++E + Q+ +++ H
Sbjct: 74 IKLYQVISTPTDFFMVMEYVSGGE-LFDYICKHGR---VEEMEARRLFQQILSAVDYCHR 129
Query: 157 DAKKIHHNLCPHNIIVSHHGAWKIFGFDFS 186
+H +L P N+++ H KI F S
Sbjct: 130 HMV-VHRDLKPENVLLDAHMNAKIADFGLS 158
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 107 LEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLC 166
+EE SL++V E P L + + + I Y QV +G+ FL + K IH +L
Sbjct: 168 VEEKSLSDV--EEEEAPEDL---YKDFLTLEHLICYSF-QVAKGMEFLAS-RKCIHRDLA 220
Query: 167 PHNIIVSHHGAWKIFGFDFSRELCLDP 193
NI++S KI F +R++ DP
Sbjct: 221 ARNILLSEKNVVKICDFGLARDIYKDP 247
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y +R + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 21 GKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQ------LRREVEIQSHLRHPNI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + + + + ++ L++ H+ +
Sbjct: 75 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCHSK-RV 133
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS 186
IH ++ P N+++ +G KI F +S
Sbjct: 134 IHRDIKPENLLLGSNGELKIADFGWS 159
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 107 LEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLC 166
+EE SL++V E P L + + + I Y QV +G+ FL + K IH +L
Sbjct: 175 VEEKSLSDV--EEEEAPEDL---YKDFLTLEHLICYSF-QVAKGMEFLAS-RKCIHRDLA 227
Query: 167 PHNIIVSHHGAWKIFGFDFSRELCLDP 193
NI++S KI F +R++ DP
Sbjct: 228 ARNILLSEKNVVKICDFGLARDIYKDP 254
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 8 KSTVTSTVNQISSVLPGNPVTREYDITGHIGSAGQGLLWKIYSGTKRSTNQDASIFVLEK 67
K VN+ + LP + Y H+GS G + S + + EK
Sbjct: 26 KGFYKQDVNKTAWELP-----KTYVSPTHVGSGAYG---SVCSAIDKRSG--------EK 69
Query: 68 RQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQ------ILIVQHPLEESSLANVLGHTEN 121
++KL + E F KR +L L+H Q +L V P SSL N
Sbjct: 70 VAIKKLSRPFQSE--IFAKRAYRELLLLKHMQHENVIGLLDVFTP--ASSLRNFYDFYLV 125
Query: 122 LP--NPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWK 179
+P + + + +I+Y + Q+ +GL ++H+ A +H +L P N+ V+ K
Sbjct: 126 MPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHS-AGVVHRDLKPGNLAVNEDCELK 184
Query: 180 IFGFDFSR 187
I F +R
Sbjct: 185 ILDFGLAR 192
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 23/97 (23%)
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT--------- 194
L +G G+ +L +D +H +L NI+V+ + K+ F SR L DP
Sbjct: 116 LRGIGSGMKYL-SDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGK 174
Query: 195 -------------RQLTPARDMFSLGATICAVYNNGK 218
R+ T A D++S G + V + G+
Sbjct: 175 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE 211
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 107 LEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLC 166
+EE SL++V E P L + + + I Y QV +G+ FL + K IH +L
Sbjct: 166 VEEKSLSDV--EEEEAPEDL---YKDFLTLEHLICYSF-QVAKGMEFLAS-RKCIHRDLA 218
Query: 167 PHNIIVSHHGAWKIFGFDFSRELCLDP 193
NI++S KI F +R++ DP
Sbjct: 219 ARNILLSEKNVVKICDFGLARDIYKDP 245
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G +Y +R + ++ VL K QLEK ++ + ++R V + LRHP I
Sbjct: 21 GKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQ------LRREVEIQSHLRHPNI 74
Query: 101 LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKK 160
L + +++ ++ L + + + + ++ L++ H+ +
Sbjct: 75 LRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCHSK-RV 133
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS 186
IH ++ P N+++ +G KI F +S
Sbjct: 134 IHRDIKPENLLLGSNGELKIADFGWS 159
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 192 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 239
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 33/161 (20%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G G ++ ++ I + + E+++ LRE V+ + RLRHP I
Sbjct: 46 GAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLRE---------VAIMKRLRHPNI 96
Query: 101 L-------------IVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQV 147
+ IV L SL +L H L R YD V
Sbjct: 97 VLFMGAVTQPPNLSIVTEYLSRGSLYRLL-HKSGAREQLDERRRLSMAYD---------V 146
Query: 148 GEGLNFLHN-DAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+G+N+LHN + +H +L N++V K+ F SR
Sbjct: 147 AKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSR 187
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 33/194 (17%)
Query: 100 ILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAK 159
I I+ +E SL + L P L KL D+ Q+ EG+ F+ +
Sbjct: 78 IYIITEYMENGSLVDFL------KTPSGIKLTINKLLDMA-----AQIAEGMAFIE-ERN 125
Query: 160 KIHHNLCPHNIIVSHHGAWKIFGFDF----------SRELCLDPTRQLTP---------- 199
IH NL NI+VS + KI F +RE P + P
Sbjct: 126 YIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTI 185
Query: 200 ARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLSDIDEGLRELVKMMLNT 259
D++S G + + +G+ N + R + E L +L+++
Sbjct: 186 KSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKE 245
Query: 260 SPELRPDNHDFLKS 273
PE RP D+L+S
Sbjct: 246 RPEDRP-TFDYLRS 258
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 123 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 179
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 129 HLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
H R + + E +Y + Q +G+ +LHN+ + IH +L N+ ++ KI F + +
Sbjct: 133 HKRRKAVTEPEARYFMRQTIQGVQYLHNN-RVIHRDLKLGNLFLNDDMDVKIGDFGLATK 191
Query: 189 LCLDPTRQL----TPAR---------------DMFSLGATICAVYNNGKSIISSDQNITF 229
+ D R+ TP D++SLG + + +S T+
Sbjct: 192 IEFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY 251
Query: 230 SELGSANINSARLSDIDEGLRELVKMMLNTSPELRPDNHDFLKSPYF 276
+ + R I+ L++ ML+ P LRP + L +F
Sbjct: 252 IRIKKNEYSVPR--HINPVASALIRRMLHADPTLRPSVAELLTDEFF 296
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 155 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDP 202
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 146 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDP 193
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 146 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDP 193
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 155 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 202
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 129 HLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
H R + + E +Y + Q +G+ +LHN+ + IH +L N+ ++ KI F + +
Sbjct: 133 HKRRKAVTEPEARYFMRQTIQGVQYLHNN-RVIHRDLKLGNLFLNDDMDVKIGDFGLATK 191
Query: 189 LCLDPTRQL----TPAR---------------DMFSLGATICAVYNNGKSIISSDQNITF 229
+ D R+ TP D++SLG + + +S T+
Sbjct: 192 IEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY 251
Query: 230 SELGSANINSARLSDIDEGLRELVKMMLNTSPELRPDNHDFLKSPYF 276
+ + R I+ L++ ML+ P LRP + L +F
Sbjct: 252 IRIKKNEYSVPR--HINPVASALIRRMLHADPTLRPSVAELLTDEFF 296
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 155 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 202
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 101/271 (37%), Gaps = 43/271 (15%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLE-------KRQLEKLDMKLREEYFTFVKRGVSQLT 93
G+G+ + R+T + ++ ++E QLE++ R E T + R V+
Sbjct: 103 GRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRE--THILRQVAG-- 158
Query: 94 RLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNF 153
HP I+ + E SS ++ L + E + + + E ++F
Sbjct: 159 ---HPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSF 215
Query: 154 LHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFS---------RELCLDPTRQLTP----- 199
LH + +H +L P NI++ + ++ F FS RELC P L P
Sbjct: 216 LHAN-NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPG-YLAPEILKC 273
Query: 200 -----------ARDMFSLGATICAVYNNGKSIISSDQNITFSEL--GSANINSARLSDID 246
D+++ G + + Q + + G +S D
Sbjct: 274 SMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRS 333
Query: 247 EGLRELVKMMLNTSPELRPDNHDFLKSPYFD 277
+++L+ +L PE R L+ P+F+
Sbjct: 334 STVKDLISRLLQVDPEARLTAEQALQHPFFE 364
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFYLAR 173
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 146 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 193
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 129 HLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
H R + + E +Y + Q +G+ +LHN+ + IH +L N+ ++ KI F + +
Sbjct: 117 HKRRKAVTEPEARYFMRQTIQGVQYLHNN-RVIHRDLKLGNLFLNDDMDVKIGDFGLATK 175
Query: 189 LCLDPTRQL----TPAR---------------DMFSLGATICAVYNNGKSIISSDQNITF 229
+ D R+ TP D++SLG + + +S T+
Sbjct: 176 IEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY 235
Query: 230 SELGSANINSARLSDIDEGLRELVKMMLNTSPELRPDNHDFLKSPYF 276
+ + R I+ L++ ML+ P LRP + L +F
Sbjct: 236 IRIKKNEYSVPR--HINPVASALIRRMLHADPTLRPSVAELLTDEFF 280
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 155 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDP 202
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 146 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 193
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV +G+ FL + K IH +L NI++S KI F +R++ DP
Sbjct: 157 FQVAKGMEFLAS-RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 204
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI F +R
Sbjct: 123 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDFGLAR 179
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 33/198 (16%)
Query: 96 RHPQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLH 155
R I I+ + + SL + L E LP KL D Q+ EG+ ++
Sbjct: 79 REEPIYIITEYMAKGSLLDFLKSDEGGKVLLP------KLIDFS-----AQIAEGMAYIE 127
Query: 156 NDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR----------ELCLDPTRQLTP------ 199
IH +L N++VS KI F +R E P + P
Sbjct: 128 R-KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFG 186
Query: 200 ----ARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLSDIDEGLRELVKM 255
D++S G + + GK N S R+ + + L +++KM
Sbjct: 187 CFTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRVENCPDELYDIMKM 246
Query: 256 MLNTSPELRPDNHDFLKS 273
E RP D+L+S
Sbjct: 247 CWKEKAEERP-TFDYLQS 263
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEXMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 68 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEXMENGSLDSFLRKHDAQFTVIQLVGMLR 125
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 126 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 184
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 185 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 233
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 234 -VDEGYR 239
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
GQG K++ K + ++ + + L+K +K+R+ T ++R + L + HP +
Sbjct: 37 GQGSFGKVFLVRKVTRPDSGHLYAM--KVLKKATLKVRDRVRTKMERDI--LADVNHPFV 92
Query: 101 LIVQHPLE-ESSLANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + + + E L +L L L ++ E +K+ L ++ GL+ LH+
Sbjct: 93 VKLHYAFQTEGKLYLILDFLRG--GDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHS-L 149
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
I+ +L P NI++ G K+ F S+E
Sbjct: 150 GIIYRDLKPENILLDEEGHIKLTDFGLSKE 179
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
++ KL D +++ + Q+ GL ++H+ A IH +L P N+ V+ KI + +R
Sbjct: 117 VKCQKLTDDHVQFLIYQILRGLKYIHS-ADIIHRDLKPSNLAVNEDCELKILDYGLAR 173
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R C
Sbjct: 128 MSYLLYQMLCGIKHLHS-AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAC 177
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 113/294 (38%), Gaps = 49/294 (16%)
Query: 15 VNQISSVLPGNPVTREYDITGHIGSAGQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLD 74
NQ S V P T+ + G+G ++Y G T + +I +++ + E
Sbjct: 9 ANQHSRVDPEELFTK-------LDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEI 61
Query: 75 MKLREEYFTFVKRGVSQLTR-----LRHPQILIVQHPLEESSLANVLGHTENLPNPLPPH 129
+++E + +TR L+ ++ I+ L S ++L P PL
Sbjct: 62 EDIQQEITVLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLK-----PGPLE-- 114
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+ I L ++ +GL++LH++ +KIH ++ N+++S G K+ F + +L
Sbjct: 115 -------ETYIATILREILKGLDYLHSE-RKIHRDIKAANVLLSEQGDVKLADFGVAGQL 166
Query: 190 CLDPTRQLTPARDMFSLGATIC--AVYNNGKSIISSDQNITFSELGSANINSARLSDID- 246
++ F + + + Y+ I S IT EL ++ L +
Sbjct: 167 TDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWS--LGITAIELAKGEPPNSDLHPMRV 224
Query: 247 ------------EG-----LRELVKMMLNTSPELRPDNHDFLKSPYFDDIGVKT 283
EG +E V+ LN P RP + LK + KT
Sbjct: 225 LFLIPKNSPPTLEGQHSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKT 278
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
GQG K++ K S + ++ + + L+K +K+R+ T ++R + L + HP I
Sbjct: 34 GQGSFGKVFLVKKISGSDARQLYAM--KVLKKATLKVRDRVRTKMERDI--LVEVNHPFI 89
Query: 101 LIVQHPLE-ESSLANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + + + E L +L L L ++ E +K+ L ++ L+ LH+
Sbjct: 90 VKLHYAFQTEGKLYLILDFLRG--GDLFTRLSKEVMFTEEDVKFYLAELALALDHLHS-L 146
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
I+ +L P NI++ G K+ F S+E
Sbjct: 147 GIIYRDLKPENILLDEEGHIKLTDFGLSKE 176
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
GQG K++ K S + ++ + + L+K +K+R+ T ++R + L + HP I
Sbjct: 33 GQGSFGKVFLVKKISGSDARQLYAM--KVLKKATLKVRDRVRTKMERDI--LVEVNHPFI 88
Query: 101 LIVQHPLE-ESSLANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + + + E L +L L L ++ E +K+ L ++ L+ LH+
Sbjct: 89 VKLHYAFQTEGKLYLILDFLRG--GDLFTRLSKEVMFTEEDVKFYLAELALALDHLHS-L 145
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
I+ +L P NI++ G K+ F S+E
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKE 175
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
GQG K++ K S + ++ + + L+K +K+R+ T ++R + L + HP I
Sbjct: 33 GQGSFGKVFLVKKISGSDARQLYAM--KVLKKATLKVRDRVRTKMERDI--LVEVNHPFI 88
Query: 101 LIVQHPLE-ESSLANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + + + E L +L L L ++ E +K+ L ++ L+ LH+
Sbjct: 89 VKLHYAFQTEGKLYLILDFLRG--GDLFTRLSKEVMFTEEDVKFYLAELALALDHLHS-L 145
Query: 159 KKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
I+ +L P NI++ G K+ F S+E
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKE 175
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 MQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDP 193
QV G+ FL + K IH +L NI++S + KI F +R++ +P
Sbjct: 206 FQVARGMEFLSS-RKCIHRDLAARNILLSENNVVKICDFGLARDIYKNP 253
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 57/250 (22%)
Query: 85 VKRGVSQLTRLRHPQIL----IVQHPLEESSLANVLGHTENLPNPLPP--HLRSYKLYDI 138
V R + L HP IL I H EE ++ + TE + L H + +
Sbjct: 76 VLREIRLLNHFHHPNILGLRDIFVH-FEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQ 134
Query: 139 EIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQ-- 196
I+Y + + GL+ LH +A +H +L P NI+++ + I F+ +RE D +
Sbjct: 135 HIQYFMYHILLGLHVLH-EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHY 193
Query: 197 -----------------LTPARDMFSLGATICAVYNNGK----SIISSDQNITFSELGSA 235
T DM+S G + ++N S + N +G+
Sbjct: 194 VTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTP 253
Query: 236 NIN--------SAR------LSDI------------DEGLRELVKMMLNTSPELRPDNHD 269
I SAR LS++ D +L+ ML +P+ R
Sbjct: 254 KIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQ 313
Query: 270 FLKSPYFDDI 279
L+ PYF+ +
Sbjct: 314 ALRHPYFESL 323
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 68 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 125
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 126 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 184
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 185 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 233
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 234 -VDEGYR 239
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 85 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 142
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 143 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 201
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 202 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 250
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 251 -VDEGYR 256
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQL-EKLDMK--LREEYFTFVKRGVSQLTRLRH 97
G+G ++ + T Q+ ++ V+ KRQ+ +K D + LRE V L +L H
Sbjct: 35 GKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE---------VQLLKQLDH 85
Query: 98 PQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHND 157
P I + E+ ++G + + +++ + QV G+ + H +
Sbjct: 86 PNIXKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYXHKN 145
Query: 158 AKKIHHNLCPHNIIV 172
K +H +L P N+++
Sbjct: 146 -KIVHRDLKPENLLL 159
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 57/250 (22%)
Query: 85 VKRGVSQLTRLRHPQIL----IVQHPLEESSLANVLGHTENLPNPLPP--HLRSYKLYDI 138
V R + L HP IL I H EE ++ + TE + L H + +
Sbjct: 76 VLREIRLLNHFHHPNILGLRDIFVH-FEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQ 134
Query: 139 EIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQ-- 196
I+Y + + GL+ LH +A +H +L P NI+++ + I F+ +RE D +
Sbjct: 135 HIQYFMYHILLGLHVLH-EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHY 193
Query: 197 -----------------LTPARDMFSLGATICAVYNNGK----SIISSDQNITFSELGSA 235
T DM+S G + ++N S + N +G+
Sbjct: 194 VTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTP 253
Query: 236 NIN--------SAR------LSDI------------DEGLRELVKMMLNTSPELRPDNHD 269
I SAR LS++ D +L+ ML +P+ R
Sbjct: 254 KIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQ 313
Query: 270 FLKSPYFDDI 279
L+ PYF+ +
Sbjct: 314 ALRHPYFESL 323
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 23 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 76
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 77 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 134
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 135 -IIHRDLKPENILLN 148
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 16 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 69
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 70 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 127
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 128 -IIHRDLKPENILLN 141
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 17 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 70
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 71 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 128
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 129 -IIHRDLKPENILLN 142
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 18 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 71
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 72 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 129
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 130 -IIHRDLKPENILLN 143
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 19 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 72
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 73 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 130
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 131 -IIHRDLKPENILLN 144
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEXMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 39 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 92
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 93 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 150
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 151 -IIHRDLKPENILLN 164
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 38 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 91
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 92 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 149
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 150 -IIHRDLKPENILLN 163
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 27/147 (18%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGF--------DFSRELCLDPTRQL 197
Q+ +G++++H+ K IH +L P NI + KI F D R R +
Sbjct: 144 QITKGVDYIHS-KKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYM 202
Query: 198 TPAR----------DMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLSDI-D 246
+P + D+++LG + + + + + + T ++ +SDI D
Sbjct: 203 SPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFT-------DLRDGIISDIFD 255
Query: 247 EGLRELVKMMLNTSPELRPDNHDFLKS 273
+ + L++ +L+ PE RP+ + L++
Sbjct: 256 KKEKTLLQKLLSKKPEDRPNTSEILRT 282
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 38 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 91
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 92 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 149
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 150 -IIHRDLKPENILLN 163
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 41 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 94
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 95 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 153 -IIHRDLKPENILLN 166
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 39 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 92
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 93 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 150
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 151 -IIHRDLKPENILLN 164
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 39 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 92
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 93 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 150
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 151 -IIHRDLKPENILLN 164
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 44 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 97
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 98 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 155
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 156 -IIHRDLKPENILLN 169
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 41 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 94
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 95 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 153 -IIHRDLKPENILLN 166
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 41 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 94
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 95 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 153 -IIHRDLKPENILLN 166
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 42 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 95
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 96 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 153
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 154 -IIHRDLKPENILLN 167
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 41 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 94
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 95 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 153 -IIHRDLKPENILLN 166
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 95 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 152
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 153 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 211
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 212 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 260
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 261 -VDEGYR 266
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 41 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 94
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 95 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 153 -IIHRDLKPENILLN 166
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 42 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 95
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 96 VKLYFTFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 153
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 154 -IIHRDLKPENILLN 167
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
L D +++ + Q+ GL ++H+ A IH +L P N+ V+ +I F +R+
Sbjct: 128 LSDEHVQFLVYQLLRGLKYIHS-AGIIHRDLKPSNVAVNEDSELRILDFGLARQ 180
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 46 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 99
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYD-IEIKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 100 VKLYFCFQDDEKLYFGLSYAKN--GELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 157
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 158 -IIHRDLKPENILLN 171
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 130 LRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
++ KL + I++ + Q+ +GL ++H A IH +L P N+ V+ KI F +R+
Sbjct: 120 MKHEKLGEDRIQFLVYQMLKGLRYIHA-AGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQI 100
G+G + + +T+++ +I +LEKR + ++E +V R ++RL HP
Sbjct: 41 GEGSFSTVVLARELATSREYAIKILEKRHI------IKENKVPYVTRERDVMSRLDHPFF 94
Query: 101 LIVQHPLEESS-LANVLGHTENLPNPLPPHLRSYKLYDIE-IKYGLMQVGEGLNFLHNDA 158
+ + ++ L L + +N L ++R +D ++ ++ L +LH
Sbjct: 95 VKLYFTFQDDEKLYFGLSYAKN--GCLLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 159 KKIHHNLCPHNIIVS 173
IH +L P NI+++
Sbjct: 153 -IIHRDLKPENILLN 166
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F SR L DP
Sbjct: 155 GIASGMKYL-SDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLVGIKHLHS-AGIIHRDLKPSNIVVKSDATLKILDFGLAR 174
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 59/235 (25%)
Query: 39 SAGQGLLWKIYSGTKRSTNQDASIFVLEK--RQLEKLDMKLREEYFTFVKRGVSQLTRLR 96
S GQG KI+ G +R + E + L+K E +F S +++L
Sbjct: 15 SLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFF----EAASMMSKLS 70
Query: 97 HPQI-------------LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYG 143
H + ++VQ ++ SL L +N N L+ +E+
Sbjct: 71 HKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCIN---------ILWKLEVA-- 119
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWK-----------------IFGFDFS 186
Q+ ++FL + IH N+C NI++ K + D
Sbjct: 120 -KQLAAAMHFLEENT-LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDIL 177
Query: 187 REL-------CLDPTRQLTPARDMFSLGATICAVYNNGK---SIISSDQNITFSE 231
+E C++ + L A D +S G T+ + + G S + S + + F E
Sbjct: 178 QERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYE 232
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLVGIKHLHS-AGIIHRDLKPSNIVVKSDATLKILDFGLAR 174
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLVGIKHLHS-AGIIHRDLKPSNIVVKSDATLKILDFGLAR 174
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRE 188
L D +++ + Q+ GL ++H+ A IH +L P N+ V+ +I F +R+
Sbjct: 120 LSDEHVQFLVYQLLRGLKYIHS-AGIIHRDLKPSNVAVNEDCELRILDFGLARQ 172
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLXGIKHLHS-AGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLXGIKHLHS-AGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 78 REEYFTFVKRGVSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPNP-LPPHLRSYKLY 136
+EE +R V ++L H I+ + EE ++ E + P L ++ S+
Sbjct: 51 KEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV--MEYIEGPTLSEYIESHGPL 108
Query: 137 DIEIKYGLM-QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC 190
++ Q+ +G+ H D + +H ++ P NI++ + KIF F ++ L
Sbjct: 109 SVDTAINFTNQILDGIKHAH-DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALS 162
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 121 MSYLLYQMLXGIKHLHS-AGIIHRDLKPSNIVVKSDXTLKILDFGLAR 167
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F +R L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQ- 99
G+G + S T + T + +I +++E D L F R + ++ L+H +
Sbjct: 20 GEGAYGVVCSATHKPTGEIVAI-----KKIEPFDKPL------FALRTLREIKILKHFKH 68
Query: 100 -----ILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFL 154
I +Q P + V E + L + + L D I+Y + Q + L
Sbjct: 69 ENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVL 128
Query: 155 HNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
H + IH +L P N++++ + K+ F +R
Sbjct: 129 HG-SNVIHRDLKPSNLLINSNCDLKVCDFGLAR 160
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLCGIKHLHS-AGIIHRDLKPSNIVVKSDATLKILDFGLAR 174
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 35 GHIGSAGQGLLWKIYSGTK-RSTNQDASIFVLEKRQLEKLDMKLREEYFT-FVKRG--VS 90
G + A L + Y+ K R T + S + E L L+ + Y+ +++R V
Sbjct: 20 GQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVXLLASLNHQYVVRYYAAWLERRNFVK 79
Query: 91 QLTRLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEG 150
T ++ L +Q E+ L H+ENL + R ++ Q+ E
Sbjct: 80 PXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQRDEYWRLFR-----------QILEA 128
Query: 151 LNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
L+++H+ IH NL P NI + KI F ++ +
Sbjct: 129 LSYIHSQGI-IHRNLKPXNIFIDESRNVKIGDFGLAKNV 166
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
QV G+ +L + K IH +L N++V+ KI F +R++ +D ++ T R
Sbjct: 158 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGR 213
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLCGIKHLHS-AGIIHRDLKPSNIVVKSDATLKILDFGLAR 174
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 59/235 (25%)
Query: 39 SAGQGLLWKIYSGTKRSTNQDASIFVLEK--RQLEKLDMKLREEYFTFVKRGVSQLTRLR 96
S GQG KI+ G +R + E + L+K E +F S +++L
Sbjct: 15 SLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFF----EAASMMSKLS 70
Query: 97 HPQI-------------LIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYG 143
H + ++VQ ++ SL L +N N L+ +E+
Sbjct: 71 HKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKNKNCIN---------ILWKLEVA-- 119
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWK-----------------IFGFDFS 186
Q+ ++FL + IH N+C NI++ K + D
Sbjct: 120 -KQLAWAMHFLEENT-LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDIL 177
Query: 187 REL-------CLDPTRQLTPARDMFSLGATICAVYNNGK---SIISSDQNITFSE 231
+E C++ + L A D +S G T+ + + G S + S + + F E
Sbjct: 178 QERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYE 232
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQ- 99
G+G + S T + T + +I +++E D L F R + ++ L+H +
Sbjct: 20 GEGAYGVVCSATHKPTGEIVAI-----KKIEPFDKPL------FALRTLREIKILKHFKH 68
Query: 100 -----ILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFL 154
I +Q P + V E + L + + L D I+Y + Q + L
Sbjct: 69 ENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVL 128
Query: 155 HNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
H + IH +L P N++++ + K+ F +R
Sbjct: 129 HG-SNVIHRDLKPSNLLINSNCDLKVCDFGLAR 160
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLTPARDMFS 205
+GL +L K +H ++ P NI+V+ G K+ F S +L + + R S
Sbjct: 118 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMS 174
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
Q+ G+ +L + K IH +L N++V+ + KI F +R++ +D ++ T R
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGR 220
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 41 GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKLREEYFTFVKRGVSQLTRLRHPQ- 99
G+G + S T + T + +I +++E D L F R + ++ L+H +
Sbjct: 20 GEGAYGVVCSATHKPTGEIVAI-----KKIEPFDKPL------FALRTLREIKILKHFKH 68
Query: 100 -----ILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFL 154
I +Q P + V E + L + + L D I+Y + Q + L
Sbjct: 69 ENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVL 128
Query: 155 HNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
H + IH +L P N++++ + K+ F +R
Sbjct: 129 HG-SNVIHRDLKPSNLLINSNCDLKVCDFGLAR 160
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
Q+ G+ +L + K IH +L N++V+ + KI F +R++ +D ++ T R
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGR 220
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLD 192
QV +G+ FL + +H +L N++V+H KI F +R++ D
Sbjct: 180 QVAKGMEFLEFKSC-VHRDLAARNVLVTHGKVVKICDFGLARDIMSD 225
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 28/154 (18%)
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFS---------RELCLDPTRQLTP------------ 199
+H +L P NI++ K+ F FS RE+C P+ L P
Sbjct: 146 VHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPS-YLAPEIIECSMNDNHP 204
Query: 200 ----ARDMFSLGATICAVYNNGKSIISSDQNITFSELGSAN--INSARLSDIDEGLRELV 253
DM+S G + + Q + + S N S D + +++LV
Sbjct: 205 GYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLV 264
Query: 254 KMMLNTSPELRPDNHDFLKSPYFDDIGVKTLNYL 287
L P+ R + L P+F V+ + +
Sbjct: 265 SRFLVVQPQKRYTAEEALAHPFFQQYVVEEVRHF 298
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 40/187 (21%)
Query: 89 VSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPN-PLPPHLRSY--KLYDIEIKYGLM 145
S + + HP I+ ++ + +S ++ TE + N L LR + + I++ L
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIV--TEYMENGSLDSFLRKHDAQFTVIQLVGMLR 154
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPT----------- 194
+ G+ +L +D +H +L NI+++ + K+ F R L DP
Sbjct: 155 GIASGMKYL-SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIP 213
Query: 195 -----------RQLTPARDMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLS 243
R+ T A D++S G + V + G+ + E+ + ++ A
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER--------PYWEMSNQDVIKA--- 262
Query: 244 DIDEGLR 250
+DEG R
Sbjct: 263 -VDEGYR 268
>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
Length = 397
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVS 173
+K + QV +GL++LH + IH ++ P NI++S
Sbjct: 148 VKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS 181
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 24 GNPVTREYDITGH--IGSA-GQGLLWKIYSGTKRSTNQDASIFVLEKRQLEKLDMKL-RE 79
G R+ D+ H +G G G + ++ T ++ + ++KR+L + RE
Sbjct: 1 GMSTFRQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSRE 60
Query: 80 EYFTFVKRGVSQLTRLRHPQILIVQHPLEESSLANVLGHTENLPNPLPPHLRSYKLYDIE 139
E ++R V+ L +RHP I+ + E + ++ + L + E
Sbjct: 61 E----IEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDE 116
Query: 140 IKYGLMQVGEGLNFLHNDAKKI-HHNLCPHNIIV 172
L Q+ +G+++LH +K+I H +L P NI++
Sbjct: 117 ATQFLKQILDGVHYLH--SKRIAHFDLKPENIML 148
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ G+ +L + K IH +L N++V+ + KI F +R++
Sbjct: 211 QLARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDI 253
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 177 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 217
>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its
Substrate AsfSF2
Length = 381
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVS 173
+K + QV +GL++LH + IH ++ P NI++S
Sbjct: 132 VKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS 165
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
QV G+ +L + K IH +L N++V+ KI F +R++
Sbjct: 158 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 200
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 356 RDVLPHLIPVMKLQEPIQVLLIFMQKMEVLLKLTPPEQVKSEVLPLLYRALESDSQQIQE 415
+D LP V +L++ +++ +K E P E++KSEVL A+ + + I +
Sbjct: 397 KDELPF---VRELEDAKNIVIAKQEKYE------PSEEIKSEVL----EAVTEEPEDISD 443
Query: 416 LCLSILPSLANLI-EYPAMKNALLPRI 441
+ +S++ S + I EY + +LP I
Sbjct: 444 IVISLISSYRSCIKEYRFSERRILPEI 470
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
QV G+ +L + K IH +L N++V+ KI F +R++
Sbjct: 151 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 193
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
QV G+ +L + K IH +L N++V+ KI F +R++ +D ++ T R
Sbjct: 158 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGR 213
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
QV G+ +L + K IH +L N++V+ KI F +R++
Sbjct: 143 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 185
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
QV G+ +L + K IH +L N++V+ KI F +R++
Sbjct: 147 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 189
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
QV G+ +L + K IH +L N++V+ KI F +R++
Sbjct: 158 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 200
>pdb|3FAY|A Chain A, Crystal Structure Of The Gap-Related Domain Of Iqgap1
Length = 387
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 7 LKSTVTSTVNQISSVLPGNPVTREYDITGHIGSAGQGLLWKIYSGTKRSTNQDASI 62
L+ + S V+QI ++ GNP + ++ + G+ GQ L +I + + D S+
Sbjct: 72 LQEEIKSKVDQIQEIVTGNPTVIKXVVSFNRGARGQNALRQILAPVVKEIXDDKSL 127
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLCGIKHLHS-AGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSR 187
+ Y L Q+ G+ LH+ A IH +L P NI+V KI F +R
Sbjct: 128 MSYLLYQMLCGIKHLHS-AGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 142 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 182
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
QV G+ +L + K IH +L N++V+ KI F +R++
Sbjct: 150 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 192
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLT 198
+ L FLH++ + IH N+ NI++ G+ K+ F F ++ + +++ T
Sbjct: 128 QALEFLHSN-QVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 176
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
Q+ G+ +L + K IH +L N++V+ + KI F +R++ +D ++ T R
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGR 220
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQLTPARDMFS 205
+GL +L K +H ++ P NI+V+ G K+ F S +L R S
Sbjct: 134 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMS 190
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ G+ +L + K IH +L N++V+ + KI F +R++
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDI 207
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
QV G+ +L + K IH +L N++V+ KI F +R++ +D ++ T R
Sbjct: 199 QVARGMEYLAS-KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGR 254
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
Q+ G+ +L + K IH +L N++V+ + KI F +R++ +D ++ T R
Sbjct: 165 QLARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGR 220
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ G+ +L + K IH +L N++V+ + KI F +R++
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDI 207
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ G+ +L + K IH +L N++V+ + KI F +R++
Sbjct: 157 QLARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDI 199
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
Q+ G+ +L + K IH +L N++V+ + KI F +R++ +D ++ T R
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGR 220
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
+GL +L K +H ++ P NI+V+ G K+ F S +L
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ G+ +L + K IH +L N++V+ + KI F +R++
Sbjct: 154 QLARGMEYLASQ-KCIHRDLAARNVLVTENNVMKIADFGLARDI 196
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL-CLDPTRQLTPAR 201
Q+ G+ +L + K IH +L N++V+ + KI F +R++ +D ++ T R
Sbjct: 165 QLARGMEYLAS-QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGR 220
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 30/155 (19%)
Query: 161 IHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQL-----TPAR-------------- 201
+H +L P NI++ K+ F FS + LDP +L TP+
Sbjct: 146 VHRDLKPENILLDDDMNIKLTDFGFSCQ--LDPGEKLRSVCGTPSYLAPEIIECSMNDNH 203
Query: 202 -------DMFSLGATICAVYNNGKSIISSDQNITFSELGSAN--INSARLSDIDEGLREL 252
DM+S G + + Q + + S N S D + +++L
Sbjct: 204 PGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDL 263
Query: 253 VKMMLNTSPELRPDNHDFLKSPYFDDIGVKTLNYL 287
V L P+ R + L P+F V+ + +
Sbjct: 264 VSRFLVVQPQKRYTAEEALAHPFFQQYVVEEVRHF 298
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 356 RDVLPHLIPVMKLQEPIQVLLIFMQKMEVLLKLTPPEQVKSEVLPLLYRALESDSQQIQE 415
+D LP V +L++ +++ +K E P E++KSEVL A+ + + I +
Sbjct: 448 KDELPF---VRELEDAKNIVIAKQEKYE------PSEEIKSEVL----EAVTEEPEDISD 494
Query: 416 LCLSILPSLANLI-EYPAMKNALLPRI 441
+ +S++ S + I EY + +LP I
Sbjct: 495 IVISLISSYRSCIKEYRFSERRILPEI 521
>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific
Kinase 2 (Srpk2) Bound To Purvalanol B
Length = 389
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 140 IKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIV 172
+K + QV +GL++LH+ K IH ++ P NI++
Sbjct: 142 VKSIIRQVLQGLDYLHSKCKIIHTDIKPENILM 174
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 27/147 (18%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGF--------DFSRELCLDPTRQL 197
Q+ +G++++H+ K I+ +L P NI + KI F D R R +
Sbjct: 130 QITKGVDYIHS-KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRSKGTLRYM 188
Query: 198 TPAR----------DMFSLGATICAVYNNGKSIISSDQNITFSELGSANINSARLSDI-D 246
+P + D+++LG + + + + + + T ++ +SDI D
Sbjct: 189 SPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFT-------DLRDGIISDIFD 241
Query: 247 EGLRELVKMMLNTSPELRPDNHDFLKS 273
+ + L++ +L+ PE RP+ + L++
Sbjct: 242 KKEKTLLQKLLSKKPEDRPNTSEILRT 268
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 137 DIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVS 173
+ E+K L+QVG GL ++H+ +H ++ P NI +S
Sbjct: 110 EAELKDLLLQVGRGLRYIHS-MSLVHMDIKPSNIFIS 145
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 31/170 (18%)
Query: 107 LEESSLANVLGHTENLPNPLPPHLRSYKLYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLC 166
LE + + H + PH R Y Q+ +LH+ I+ +L
Sbjct: 121 LEYAPGGEMFSHLRRIGRFSEPHARFY----------AAQIVLTFEYLHS-LDLIYRDLK 169
Query: 167 PHNIIVSHHGAWKIFGFDFSRE-------LCLDP---------TRQLTPARDMFSLGATI 210
P N+++ G K+ F F++ LC P ++ A D ++LG I
Sbjct: 170 PENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLI 229
Query: 211 CAVYNNGKSIISSDQNITFSEL---GSANINSARLSDIDEGLRELVKMML 257
+ G +DQ I E G S SD+ + LR L+++ L
Sbjct: 230 YEM-AAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDL 278
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 137 DIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVS 173
+ E+K L+QVG GL ++H+ +H ++ P NI +S
Sbjct: 112 EAELKDLLLQVGRGLRYIHS-MSLVHMDIKPSNIFIS 147
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 137 DIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVS 173
+ E+K L+QVG GL ++H+ +H ++ P NI +S
Sbjct: 112 EAELKDLLLQVGRGLRYIHS-MSLVHMDIKPSNIFIS 147
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 137 DIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVS 173
+ E+K L+QVG GL ++H+ +H ++ P NI +S
Sbjct: 114 EAELKDLLLQVGRGLRYIHS-MSLVHMDIKPSNIFIS 149
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 28/147 (19%)
Query: 144 LMQVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELCLDPTRQ------- 196
+Q+ L +H+ + +H ++ P N+ ++ G K+ R T
Sbjct: 142 FVQLCSALEHMHS-RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTP 200
Query: 197 --LTPAR----------DMFSLGATICAVYNNG--KSIISSDQNITFS---ELGSANINS 239
++P R D++SLG C +Y +S D+ +S ++ +
Sbjct: 201 YYMSPERIHENGYNFKSDIWSLG---CLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPP 257
Query: 240 ARLSDIDEGLRELVKMMLNTSPELRPD 266
E LR+LV M +N PE RPD
Sbjct: 258 LPSDHYSEELRQLVNMCINPDPEKRPD 284
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ +G+ +L + K +H +L NI+V+ KI F SR++
Sbjct: 158 QISQGMQYL-AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 146 QVGEGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSREL 189
Q+ +G+ +L + K +H +L NI+V+ KI F SR++
Sbjct: 158 QISQGMQYL-AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor
Length = 335
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 124 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 162
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 356 RDVLPHLIPVMKLQEPIQVLLIFMQKMEVLLKLTPPEQVKSEVLPLLYRALESDSQQIQE 415
+D LP V +L++ +++ +K E P E++KSEVL A+ + + I +
Sbjct: 397 KDELPF---VRELEDAKNIVIAKQEKYE------PSEEIKSEVL----EAVTEEPEDISD 443
Query: 416 LCLSILPSLANLI-EYPAMKNALLPRI 441
+ +S++ S + I EY + +LP I
Sbjct: 444 IVISLISSYRSCIKEYRFSERRILPEI 470
>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc
pdb|3FL5|A Chain A, Protein Kinase Ck2 In Complex With The Inhibitor
Quinalizarin
pdb|3PZH|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With
Emodin At 1.92 A Resolution
Length = 332
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 123 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 161
>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive Inhibitor
Emodin
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1OM1|A Chain A, Crystal Structure Of Maize Ck2 Alpha In Complex With Iqa
pdb|1ZOE|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|1ZOG|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives
pdb|1ZOH|A Chain A, Crystal Structure Of Protein Kinase Ck2 In Complex With
Tbb- Derivatives Inhibitors
pdb|2OXD|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole K17, K22 And K32 Inhibitors
pdb|2OXX|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|A Chain A, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|2OXY|B Chain B, Protein Kinase Ck2 In Complex With
Tetrabromobenzoimidazole Derivatives K17, K22 And K32
pdb|3PWD|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Nbc (Z1)
Length = 332
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 123 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 161
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 149 EGLNFLHNDAKKIHHNLCPHNIIVSHHGAWKIFGFDFSRELC------------------ 190
+ LN L + K IH ++ P NI++ G K+ F S +L
Sbjct: 136 KALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPE 195
Query: 191 -LDP--TRQLTPAR-DMFSLGATICAV------YNNGKSIISSDQNITFSELGSANINSA 240
+DP +RQ R D++SLG T+ + Y S+ DQ + ++++
Sbjct: 196 RIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF--DQLTQVVKGDPPQLSNS 253
Query: 241 RLSDIDEGLRELVKMMLNTSPELRPDNHDFLKSPY 275
+ V + L RP + LK P+
Sbjct: 254 EEREFSPSFINFVNLCLTKDESKRPKYKELLKHPF 288
>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex
With The Inhibitor
4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68)
Length = 331
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 122 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 160
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 356 RDVLPHLIPVMKLQEPIQVLLIFMQKMEVLLKLTPPEQVKSEVLPLLYRALESDSQQIQE 415
+D LP V +L++ +++ +K E P E++KSEVL A+ + + I +
Sbjct: 142 KDELPF---VRELEDAKNIVIAKQEKYE------PSEEIKSEVL----EAVTEEPEDISD 188
Query: 416 LCLSILPSLANLI-EYPAMKNALLPRI 441
+ +S++ S + I EY + +LP I
Sbjct: 189 IVISLISSYRSCIKEYRFSERRILPEI 215
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 396 SEVLPLLYRALESDSQQIQELCLSILPSLANL-------IEYPAMKNALLPRIKRLCIST 448
SE+ P LY L + S +I+ LC + PSL L IE PA+ PR++RL S
Sbjct: 293 SELPPNLYY-LNASSNEIRSLC-DLPPSLEELNVSNNKLIELPALP----PRLERLIASF 346
Query: 449 SHIS 452
+H++
Sbjct: 347 NHLA 350
>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Apigenin
Length = 326
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 122 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 160
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
pdb|1M2Q|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-Xanten-9-
OneCK2 KINASE COMPLEX
pdb|1M2R|A Chain A, Crystal Structure Of 5,8-Di-Amino-1,4-Di-Hydroxy-
AnthraquinoneCK2 KINASE COMPLEX
pdb|3KXM|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor K74
pdb|3KXN|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor Tetraiodobenzimidazole (K88)
Length = 327
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 122 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 160
>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
3,4,5,6,7-Pentabromo-1h-Indazole (K64)
pdb|3KXH|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Inhibitor
(2-Dymethylammino-4,5,6,7-Tetrabromobenzoimidazol-1yl-
Acetic Acid (K66)
Length = 327
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 122 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 160
>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVJ|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVK|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVL|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVM|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|2PVN|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine
Derivatives As Potent Inhibitors Of Protein Kinase Ck2
pdb|3BE9|A Chain A, Structure-Based Design And Synthesis Of Novel Macrocyclic
Pyrazolo[1,5-A] [1,3,5]triazine Compounds As Potent
Inhibitors Of Protein Kinase Ck2 And Their Anticancer
Activities
Length = 352
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 143 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 181
>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-
AnthraquinoneCK2 KINASE COMPLEX
pdb|4DGO|A Chain A, Crystal Structure Of Maize Ck2 In Complex With Tyrphostin
Ag99
Length = 325
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 122 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 160
>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The
Inhibitor Luteolin
Length = 326
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 135 LYDIEIKYGLMQVGEGLNFLHNDAKKIHHNLCPHNIIVSH 174
L D +I+Y + ++ + L++ H+ +H ++ PHN+++ H
Sbjct: 122 LTDYDIRYYIYELLKALDYCHSQGI-MHRDVKPHNVMIDH 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,386,471
Number of Sequences: 62578
Number of extensions: 688194
Number of successful extensions: 2229
Number of sequences better than 100.0: 343
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 365
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)