BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12793
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 56/111 (50%), Gaps = 30/111 (27%)
Query: 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ---------------FITVCSV 229
S RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P +
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGI 280
M Q IS +++ + + +D + G T TI K HEQG+
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYG--------------TKLETIRKI-HEQGL 97
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 330
TTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG
Sbjct: 40 TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYG 75
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 38/177 (21%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLI 122
++VRA F+Y+P DD +P G+ F+ GDIL + + D WWQAR+ DN G++
Sbjct: 6 LYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIV 63
Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
PS + W D++ V + ++++YE V +
Sbjct: 64 PSK--RRWERKMRARDRS---------------------------VKSEENVLSYEAVQR 94
Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDH 239
L + +++LG + I + LI+++PDK+ VP T +++ +D H
Sbjct: 95 LSINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPH-TTRPKREYEVDGRDYH 147
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 38/138 (27%)
Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKT-KHEQGIYS--- 282
+ + + D WWQAR+ DN G++PS + W D++ K E+ + S
Sbjct: 34 ILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK--RRWERKMRARDRSVKSEENVLSYEA 91
Query: 283 ------SFSLP----------------------FSVYRRDTTRSPRSDEENGRAYYFISH 314
+++ P F TTR R E +GR Y+F+S
Sbjct: 92 VQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSS 151
Query: 315 DEMMS-DIAANQYLEYGK 331
E M DI + ++E G+
Sbjct: 152 REQMERDIQNHLFIEAGQ 169
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 52
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 330
TTR PR EE+G+ Y+FIS +EM +I+AN++LE+G
Sbjct: 54 TTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFG 89
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 37/159 (23%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLI 122
++VRA F+Y+ D +P G+ F+ GDIL +I+ D WWQAR+ D + G+I
Sbjct: 12 LYVRALFDYDKTKDSGLPSQ--GLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVI 69
Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
PS ++K + ++ F +++YE V +
Sbjct: 70 PSKR---------RVEKKERARLKTVKFNSK--------------------VLSYEPVNQ 100
Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
+ +++LG + + + LI++FPDK+ VP
Sbjct: 101 QEVNYTRPVIILGPM---KDRVNDDLISEFPDKFGSCVP 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 34/136 (25%)
Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQE--WRTACSTID------------ 272
+ +I+ D WWQAR+ D + G+IPS E R T+
Sbjct: 40 ILHVINASDDEWWQARQVTPDGESDEVGVIPSKRRVEKKERARLKTVKFNSKVLSYEPVN 99
Query: 273 ----------------KTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFI-SHD 315
K + + S F F TTR R E +GR Y+F+ S +
Sbjct: 100 QQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSRE 159
Query: 316 EMMSDIAANQYLEYGK 331
+M DI ++++E G+
Sbjct: 160 QMEKDIQEHKFIEAGQ 175
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 66 IFVRAQFNYNPLDDDLIPCA--QAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAG 120
++RA F+Y+ D C ++F+ GD+L +I D WWQAR+ D+ G
Sbjct: 8 FYIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIG 63
Query: 121 LIPSP---ELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTY 177
IPS E +EW K K + GR + +++Y
Sbjct: 64 FIPSKRRVERREWSRL-----KAKDWGSSSGSQGR------------------EDSVLSY 100
Query: 178 EEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKD 237
E V ++ + +++LG + + L+++FPDK+ VP T ++I +D
Sbjct: 101 ETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH-TTRPKREYEIDGRD 156
Query: 238 DH 239
H
Sbjct: 157 YH 158
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 43/145 (29%)
Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEW-RTACSTIDKTKHEQG--- 279
+ +I D WWQAR+ D+ G IPS E +EW R + QG
Sbjct: 36 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGRED 95
Query: 280 --------------------------------IYSSFSLPFSVYRRDTTRSPRSDEENGR 307
+ S F F TTR R E +GR
Sbjct: 96 SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGR 155
Query: 308 AYYFISHDEMMS-DIAANQYLEYGK 331
Y+F+S E M DI A++++E G+
Sbjct: 156 DYHFVSSREKMEKDIQAHKFIEAGQ 180
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 66 IFVRAQFNYNPLDDDLIPCA--QAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAG 120
++RA F+Y+ D C ++F+ GD+L +I D WWQAR+ D+ G
Sbjct: 2 FYIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIG 57
Query: 121 LIPSP---ELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTY 177
IPS E +EW K K + GR + +++Y
Sbjct: 58 FIPSKRRVERREWSRL-----KAKDWGSSSGSQGR------------------EDSVLSY 94
Query: 178 EEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKD 237
E V ++ + +++LG + + L+++FPDK+ VP T ++I +D
Sbjct: 95 ETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH-TTRPKREYEIDGRD 150
Query: 238 DH 239
H
Sbjct: 151 YH 152
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 43/145 (29%)
Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEW-RTACSTIDKTKHEQG--- 279
+ +I D WWQAR+ D+ G IPS E +EW R + QG
Sbjct: 30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGRED 89
Query: 280 --------------------------------IYSSFSLPFSVYRRDTTRSPRSDEENGR 307
+ S F F TTR R E +GR
Sbjct: 90 SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGR 149
Query: 308 AYYFISHDEMMS-DIAANQYLEYGK 331
Y+F+S E M DI A++++E G+
Sbjct: 150 DYHFVSSREKMEKDIQAHKFIEAGQ 174
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 39/181 (21%)
Query: 67 FVRAQFNYNPLDDDLIPCA--QAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGL 121
++RA F+Y+ D C ++F+ GD+L +I D WWQAR+ D+ G
Sbjct: 429 YIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 484
Query: 122 IPSP---ELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYE 178
IPS E +EW K K + GR + +++YE
Sbjct: 485 IPSKRRVERREWSRL-----KAKDWGSSSGSQGR------------------EDSVLSYE 521
Query: 179 EVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDD 238
V ++ + +++LG + + L+++FPDK+ VP T ++I +D
Sbjct: 522 TVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPH-TTRPKREYEIDGRDY 577
Query: 239 H 239
H
Sbjct: 578 H 578
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 43/145 (29%)
Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEW-RTACSTIDKTKHEQG--- 279
+ +I D WWQAR+ D+ G IPS E +EW R + QG
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGRED 515
Query: 280 --------------------------------IYSSFSLPFSVYRRDTTRSPRSDEENGR 307
+ S F F TTR R E +GR
Sbjct: 516 SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGR 575
Query: 308 AYYFISHDEMMS-DIAANQYLEYGK 331
Y+F+S E M DI A++++E G+
Sbjct: 576 DYHFVSSREKMEKDIRAHKFIEAGQ 600
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 16 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 66
Query: 127 LQEWRTACSTI 137
++++R A +++
Sbjct: 67 VEKYRPASASV 77
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 271
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 38 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 77
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 138 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 188
Query: 127 LQEWRTACSTI 137
++++R A +++
Sbjct: 189 VEKYRPASASV 199
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 271
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 160 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 199
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 136 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 186
Query: 127 LQEWRTACSTI 137
++++R A +++
Sbjct: 187 VEKYRPASASV 197
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 271
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 158 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 197
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 136 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 186
Query: 127 LQEWRTACSTI 137
++++R A +++
Sbjct: 187 VEKYRPASASV 197
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID-------KTKHEQGIYS 282
+ +I K + WW A ++ G G+IP P ++++R A +++ + H Q +
Sbjct: 158 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGG 215
Query: 283 SFSLPFSVYRRDTTRSPRSDEENGRAY 309
P Y + + +P + +NG Y
Sbjct: 216 PEPGP---YAQPSVNTPLPNLQNGPIY 239
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N DD+ +P F+ GDIL+I K + WW A +++ G G+IP P
Sbjct: 3 YVRALFDFNGNDDEDLP-------FKKGDILKIRDKPEEQWWNA--EDMDGKRGMIPVPY 53
Query: 127 LQEWRTACSTI 137
+++ R + +++
Sbjct: 54 VEKCRPSSASV 64
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
TTR+PR EE+G+ YYF++ + M DIAA ++E+ +
Sbjct: 39 TTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 75
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 5 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 55
Query: 127 LQEW 130
++++
Sbjct: 56 VEKY 59
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 53
Query: 127 LQEW 130
++++
Sbjct: 54 VEKY 57
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 53
Query: 127 LQEW 130
++++
Sbjct: 54 VEKY 57
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 5 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 55
Query: 127 LQEW 130
++++
Sbjct: 56 VEKY 59
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 2 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 52
Query: 127 LQEW 130
++++
Sbjct: 53 VEKY 56
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A ++ G G+IP P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 53
Query: 127 LQEW 130
++++
Sbjct: 54 VEKY 57
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
FV+A F++NP + +AF+ GD++ +I+KDD NWW+ + +N G+ PS
Sbjct: 4 FVQALFDFNPQE-------SGELAFKRGDVITLINKDDPNWWEGQLNN---RRGIFPS 51
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
FV+A F++NP + +AF+ GD++ +I+KDD NWW+ + +N G+ PS
Sbjct: 4 FVQALFDFNPQE-------SGELAFKRGDVITLINKDDPNWWEGQLNN---RRGIFPS 51
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
FV+A F++NP + +AF+ GD++ +I+KDD NWW+ + +N G+ PS
Sbjct: 6 FVQALFDFNPQE-------SGELAFKRGDVITLINKDDPNWWEGQLNN---RRGIFPS 53
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 285 SLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
S FSV TTR+PR+ E NG+ Y F+S DE S I N+++E+ +
Sbjct: 29 SFGFSV--SSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 73
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 285 SLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
S FSV TTR+PR+ E NG+ Y F+S DE S I N+++E+ +
Sbjct: 28 SFGFSV--SSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 52 AQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR 111
AQA + + VR +Y+ +D +P I+F+ D L + K +++WW R
Sbjct: 25 AQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGR 84
Query: 112 KDNVAGSAGLIPSP 125
G IPSP
Sbjct: 85 LVKEGCEIGFIPSP 98
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 52 AQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR 111
AQA + + VR +Y+ +D +P I+F+ D L + K +++WW R
Sbjct: 27 AQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGR 86
Query: 112 KDNVAGSAGLIPSP 125
G IPSP
Sbjct: 87 LVKEGCEIGFIPSP 100
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 284 FSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
FS+P TTR+PR+ E NG+ Y F+S DE S I N+++E+ +
Sbjct: 47 FSVP------STTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 88
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 52 AQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR 111
AQA + + VR Y+ +D +P I+F+ D L + K +++WW R
Sbjct: 35 AQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGR 94
Query: 112 KDNVAGSAGLIPSP 125
G IPSP
Sbjct: 95 LVKEGCEIGFIPSP 108
>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 132
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 52 AQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR 111
AQA + + VR Y+ +D +P I+F+ D L + K +++WW R
Sbjct: 35 AQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGXAISFEAKDFLHVKEKFNNDWWIGR 94
Query: 112 KDNVAGSAGLIPSP 125
G IPSP
Sbjct: 95 LVKEGCEIGFIPSP 108
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128
+ F+ G+ L+I+SK + +WW+AR N G+ GL+P+ +Q
Sbjct: 164 LPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPANYVQ 201
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 262
+I+SK + +WW+AR N G+ GL+P+ +Q
Sbjct: 172 LEILSKTNQDWWEAR--NALGTTGLVPANYVQ 201
>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid
pdb|1VYT|B Chain B, Beta3 Subunit Complexed With Aid
Length = 351
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
VR +Y + D+ P +G+ F+ D L I K ++WW R G IPSP+
Sbjct: 49 VRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR 108
Query: 128 QE 129
E
Sbjct: 109 LE 110
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128
+ F+ G+ L+I+SK + +WW+AR N G+ GL+P+ +Q
Sbjct: 135 LPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPANYVQ 172
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 262
+I+SK + +WW+AR N G+ GL+P+ +Q
Sbjct: 143 LEILSKTNQDWWEAR--NALGTTGLVPANYVQ 172
>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
pdb|1VYU|B Chain B, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
Length = 351
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
VR +Y + D+ P +G+ F+ D L I K ++WW R G IPSP+
Sbjct: 49 VRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR 108
Query: 128 QE 129
E
Sbjct: 109 LE 110
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VR +++ D + +P F+ G+IL II K + WW AR N G G+IP P
Sbjct: 127 YVRTLYDFPGNDAEDLP-------FKKGEILVIIEKPEEQWWSAR--NKDGRVGMIPVPY 177
Query: 127 LQEWRTACSTIDKTKHEQVNCSIFG 151
+++ + KH N + +G
Sbjct: 178 VEKL---VRSSPHGKHGNRNSNSYG 199
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
II K + WW AR N G G+IP P +++
Sbjct: 152 IIEKPEEQWWSAR--NKDGRVGMIPVPYVEK 180
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VR +++ D + +P F+ G+IL II K + WW AR N G G+IP P
Sbjct: 127 YVRTLYDFPGNDAEDLP-------FKKGEILVIIEKPEEQWWSAR--NKDGRVGMIPVPY 177
Query: 127 LQEWRTACSTIDKTKHEQVNCSIFG 151
+++ + KH N + +G
Sbjct: 178 VEKL---VRSSPHGKHGNRNSNSYG 199
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
II K + WW AR N G G+IP P +++
Sbjct: 152 IIEKPEEQWWSAR--NKDGRVGMIPVPYVEK 180
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
TTR PR E +G Y+F++HDE I+ + +LE+ +
Sbjct: 52 TTRQPRPGEVHGEHYFFVNHDEFKEXISRDAFLEHAE 88
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 52 AQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR 111
AQA + + VR +Y+ +D +P I+F+ D L + K +++WW R
Sbjct: 25 AQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGR 84
Query: 112 KDNVAGSAGLIPS 124
G IPS
Sbjct: 85 LVKEGCEIGFIPS 97
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
TTR PR E +G Y+F++HDE I+ + +LE+ +
Sbjct: 40 TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 76
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V ++Y +DD +AF G I+ +++K+D +WW K V+G GL PS
Sbjct: 5 VIGMYDYTAQNDD-------ELAFSKGQIINVLNKEDPDWW---KGEVSGQVGLFPS 51
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 214 DKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258
D+ A+ Q I V ++K+D +WW K V+G GL PS
Sbjct: 17 DELAFSKGQIINV-------LNKEDPDWW---KGEVSGQVGLFPS 51
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
V+ +Y D+ +P + ++F D L I K +++WW R G IPSP
Sbjct: 48 VKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 105
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q+ VRA+FN+ ++D ++F GD++ + ++ WW+ + G G PS
Sbjct: 6 QLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTHN---GRTGWFPS 55
Query: 125 PELQE 129
++E
Sbjct: 56 NYVRE 60
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 269 STIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE 328
S + K + + S F F TTR+ R E NG YYF+ D+ + Q+LE
Sbjct: 21 SGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLE 80
Query: 329 YGK 331
+ K
Sbjct: 81 FDK 83
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q+ VRA+FN+ ++D ++F GD++ + ++ WW+ + G G PS
Sbjct: 8 QLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEG---TLNGRTGWFPS 57
Query: 125 PELQE 129
++E
Sbjct: 58 NYVRE 62
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q+ VRA+FN+ ++D ++F GD++ + ++ WW+ + G G PS
Sbjct: 6 QLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTHN---GRTGWFPS 55
Query: 125 PELQE 129
++E
Sbjct: 56 NYVRE 60
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 34.7 bits (78), Expect = 0.077, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128
RA + + P D + F+ GDI+ I D NWW K G GLIPS +
Sbjct: 11 RALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWW---KGTSKGRTGLIPSNYVA 60
Query: 129 E 129
E
Sbjct: 61 E 61
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G ++ +++KDD +WWQ + G GL PS
Sbjct: 35 LSFSKGQLINVMNKDDPDWWQGE---INGVTGLFPS 67
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ +++KDD +WWQ + G GL PS
Sbjct: 42 LINVMNKDDPDWWQGE---INGVTGLFPS 67
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 34.3 bits (77), Expect = 0.095, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
+V+A F+++P +D + F+ GD + ++ D NWW K G G+ P
Sbjct: 4 YVQALFDFDPQED-------GELGFRRGDFIHVMDNSDPNWW---KGACHGQTGMFP 50
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
+V+A F+++P +D + F+ GD + ++ D NWW K G G+ P
Sbjct: 4 YVQALFDFDPQED-------GELGFRRGDFIHVMDNSDPNWW---KGACHGQTGMFP 50
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
+V+A F+++P +D + F+ GD + ++ D NWW K G G+ P
Sbjct: 4 YVQALFDFDPQED-------GELGFRRGDFIHVMDNSDPNWW---KGACHGQTGMFP 50
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128
RA + + P D + F+ GDI+ I D NWW K G GLIPS +
Sbjct: 7 RALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWW---KGTSKGRTGLIPSNYVA 56
Query: 129 E 129
E
Sbjct: 57 E 57
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G ++ +++KDD +WWQ + G GL PS
Sbjct: 51 LSFSKGQLINVMNKDDPDWWQGE---INGVTGLFPS 83
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ +++KDD +WWQ + G GL PS
Sbjct: 58 LINVMNKDDPDWWQGE---INGVTGLFPS 83
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 80 DLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
D A ++F+ G IL+I++ +DD NW++A D G GLIPS
Sbjct: 8 DFSATADDELSFRKGQILKILNMEDDSNWYRAELD---GKEGLIPS 50
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 72 FNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
F+Y P +DD + ++GDI++++ + + WW+ + G G+ PS ++E
Sbjct: 14 FSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGV---LNGKTGMFPSNFIKE 61
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 72 FNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
F+Y P +DD + ++GDI++++ + + WW+ + G G+ PS ++E
Sbjct: 25 FSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGV---LNGKTGMFPSNFIKE 72
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
+V+A F+++P +D + F+ GD + ++ D NWW K G G+ P
Sbjct: 160 YVQALFDFDPQED-------GELGFRRGDFIHVMDNSDPNWW---KGACHGQTGMFP 206
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
++F G+ QI++ + +WW+ R G G IPSP L
Sbjct: 24 LSFHKGEKFQILNSSEGDWWEVRS-LTTGETGYIPSPYL 61
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPEL 261
FQI++ + +WW+ R G G IPSP L
Sbjct: 32 FQILNSSEGDWWEVRS-LTTGETGYIPSPYL 61
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
VRA+FN+ ++D ++F GD++ + ++ WW+ + G G PS +
Sbjct: 7 VRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTHN---GRTGWFPSNYV 56
Query: 128 QE 129
+E
Sbjct: 57 RE 58
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F+ G+ QII+ + +WW+AR G +G IPS
Sbjct: 44 LSFKKGERFQIINNTEGDWWEARSI-ATGKSGYIPS 78
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQII+ + +WW+AR G +G IPS
Sbjct: 52 FQIINNTEGDWWEARSI-ATGKSGYIPS 78
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 61 GDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAG 120
G + +FV A ++Y + +D ++F G+ QI++ + +WW+AR G G
Sbjct: 12 GTGVTLFV-ALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARS-LTTGETG 62
Query: 121 LIPS 124
IPS
Sbjct: 63 YIPS 66
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 40 FQILNSSEGDWWEARS-LTTGETGYIPS 66
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
V+A F+++P +D + F+ GD + ++ D NWW K G G+ P
Sbjct: 3 VQALFDFDPQED-------GELGFRRGDFIHVMDNSDPNWW---KGACHGQTGMFP 48
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA +++ ++D+ + F+ G+++ ++ D NWWQ +N G+ GL PS
Sbjct: 8 VRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQG--ENHRGT-GLFPS 54
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q+ V+A+FN+ ++D + + GDI+ + ++ WW+ + G G PS
Sbjct: 10 QLIVKARFNFKQTNEDELSVCK-------GDIIYVTRVEEGGWWEG---TLNGRTGWFPS 59
Query: 125 PELQEWRTA 133
++E +++
Sbjct: 60 NYVREIKSS 68
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI+ D +WW+AR G G IPS
Sbjct: 23 LSFHKGEKFQILDGDSGDWWEARS-LTTGETGYIPS 57
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSL 286
FQI+ D +WW+AR G G IPS + +D + EQ + S L
Sbjct: 31 FQILDGDSGDWWEARS-LTTGETGYIPS-------NYVAPVDSIQGEQKLISEEDL 78
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 130
+ F+ G+IL +I K WW A+ + G+ GL+P L+ +
Sbjct: 27 LTFKKGEILLVIEKKPDGWWIAK--DAKGNEGLVPRTYLEPY 66
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 94 GDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHE 143
GDI+ I D NWW K G GLIPS + E +ID HE
Sbjct: 36 GDIIYITDXSDTNWW---KGTSKGRTGLIPSNYVAE---QAESIDNPLHE 79
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F+ G+ QII+ + +WW+AR G G IPS
Sbjct: 22 LSFKKGERFQIINNTEGDWWEARSI-ATGKNGYIPS 56
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQII+ + +WW+AR G G IPS
Sbjct: 30 FQIINNTEGDWWEARSI-ATGKNGYIPS 56
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 32 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 66
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 40 FQILNSSEGDWWEARS-LTTGETGYIPS 66
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 20 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 54
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 28 FQILNSSEGDWWEARS-LTTGETGYIPS 54
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 21 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 55
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 29 FQILNSSEGDWWEARS-LTTGETGYIPS 55
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+FV A ++Y + +D ++F G+ QI++ + +WW+AR G G IPS
Sbjct: 2 LFV-ALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 51
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 25 FQILNSSEGDWWEARS-LTTGETGYIPS 51
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 32.0 bits (71), Expect = 0.54, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 22 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 56
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEARS-LTTGETGYIPS 56
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 21 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 55
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 29 FQILNSSEGDWWEARS-LTTGETGYIPS 55
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 22 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 56
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEARS-LTTGETGYIPS 56
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128
I+F+ +ILQ+ S + WW+AR+ N G G+IPS +Q
Sbjct: 24 ISFEQNEILQV-SDIEGRWWKARRAN--GETGIIPSNYVQ 60
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 20 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 54
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 28 FQILNSSEGDWWEARS-LTTGETGYIPS 54
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 18 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 52
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 26 FQILNSSEGDWWEARS-LTTGETGYIPS 52
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 18 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 52
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 26 FQILNSSEGDWWEARS-LTTGETGYIPS 52
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 18 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 52
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 26 FQILNSSEGDWWEARS-LTTGETGYIPS 52
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 17 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 51
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 25 FQILNSSEGDWWEARS-LTTGETGYIPS 51
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI++ + +WW+AR G G IPS
Sbjct: 22 LSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 56
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEARS-LTTGETGYIPS 56
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 89 IAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPS 124
+AF+ GD++ I+ K D ++WW R + G G+ P+
Sbjct: 20 LAFKKGDVITILKKSDSQNDWWTGRTN---GKEGIFPA 54
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 80 DLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
D A ++F+ IL+I++ +DD NW++A D G GLIPS
Sbjct: 8 DFSATADDELSFRKTQILKILNMEDDSNWYRAELD---GKEGLIPS 50
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 72 FNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
F+Y+P ++D + +GD++ +I + + WW +N GL PS ++E
Sbjct: 11 FDYSPQNED-------ELELIVGDVIDVIEEVEEGWWSGTLNN---KLGLFPSNFVKE 58
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 80 DLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 130
D + A +AF+ GD+++++ + +WW + D+ G P+ ++ W
Sbjct: 18 DHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDD---EEGWFPASFVRLW 65
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 266 TACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQ 325
+ S + K + ++ F TTR PR E++G YYF S + I +
Sbjct: 14 SGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIKDGK 73
Query: 326 YLEYGKSI 333
LEY + +
Sbjct: 74 XLEYAEYV 81
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 80 DLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
D P Q + F+ GDI+ + ++ D NW++ + G +G P
Sbjct: 11 DFEPENQGELGFKEGDIITLTNQIDENWYEGM---IHGESGFFP 51
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
TTR+ R E+ G+ YYF+ +E + + + +E+ +
Sbjct: 62 TTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE 98
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA +++ ++D+ + F+ G+I+ ++ D NWW+ +N G GL PS
Sbjct: 20 VRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKG--ENHRG-IGLFPS 66
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 71 QFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
+F+Y DD + +G+I+ I K+D WW+ + + G GL P ++E
Sbjct: 7 EFDYQAQHDD-------ELTISVGEIITNIRKEDGGWWEGQ---INGRRGLFPDNFVRE 55
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA +++ +D+ + F+ G+I+ ++ D NWW+ GL PS
Sbjct: 20 VRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGETHQ---GIGLFPS 66
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 85 AQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A + G G IPS
Sbjct: 15 TETDLSFKKGERLQIVNNTEGDWWLAHSLST-GQTGYIPS 53
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 85 AQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A + G G IPS
Sbjct: 15 TETDLSFKKGERLQIVNNTEGDWWLAHSLST-GQTGYIPS 53
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 85 AQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A + G G IPS
Sbjct: 15 TETDLSFKKGERLQIVNNTEGDWWLAHSLST-GQTGYIPS 53
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSA--GLIPSPELQEWRT 132
++F+ GD+ + K++ WW D G+ G +P L E T
Sbjct: 27 LSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERET 72
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 85 AQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A G G IPS
Sbjct: 16 TETDLSFKKGERLQIVNNTEGDWWLAH-SLTTGQTGYIPS 54
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F+ G+ LQI++ + +WW A + G G IPS
Sbjct: 102 LSFKKGERLQIVNNTEGDWWLAHSLST-GQTGYIPS 136
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 80 DLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA--GLIPSPELQEWRTACSTI 137
DLI G ++ ++ KD W+ K+ + G + GLI E+ EW C ++
Sbjct: 301 DLITTCAGGRNVKVARLMATSGKDA---WECEKELLNGQSAQGLITCKEVHEWLETCGSV 357
Query: 138 D 138
+
Sbjct: 358 E 358
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 220 VPQFITVCS-----VMFQIISKDDHNWWQARKDNVAGSA--GLIPSPELQEWRTACSTID 272
V IT C+ + ++++ + W+ K+ + G + GLI E+ EW C +++
Sbjct: 299 VADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLETCGSVE 358
Query: 273 KTKHEQGIY 281
+ +Y
Sbjct: 359 DFPLFEAVY 367
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ RA +++ L++D + F+ G++++++ + +WW R N GL P+
Sbjct: 5 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRLHN---KLGLFPA 52
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 86 QAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A G G IPS
Sbjct: 21 ETDLSFKKGERLQIVNNTEGDWWLAHS-LTTGQTGYIPS 58
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ RA +++ L++D + F+ G++++++ + +WW R N GL P+
Sbjct: 7 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRLHN---KLGLFPA 54
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ RA +++ L++D + F+ G++++++ + +WW R N GL P+
Sbjct: 4 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRLHN---KLGLFPA 51
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ RA +++ L++D + F+ G++++++ + +WW R N GL P+
Sbjct: 3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRLHN---KLGLFPA 50
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 86 QAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A G G IPS
Sbjct: 21 ETDLSFKKGERLQIVNNTEGDWWLAHS-LTTGQTGYIPS 58
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F DI+ II +D WW R + G GL P+
Sbjct: 22 LSFNANDIIDIIKEDPSGWWTGR---LRGKQGLFPN 54
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 69 RAQFNY---NPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
RA ++Y NP + DL GDIL++I + + WW ++ G G +P
Sbjct: 12 RALYDYTAQNPDELDL----------SAGDILEVILEGEDGWWTVERN---GQRGFVPGS 58
Query: 126 ELQE 129
L++
Sbjct: 59 YLEK 62
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSA------GLIPSPELQE 129
++F+ GD LQ++ WW AR G+ G IPS + E
Sbjct: 24 LSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 86 QAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A + G G IPS
Sbjct: 16 ETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 86 QAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++F+ G+ LQI++ + +WW A G G IPS
Sbjct: 14 ETDLSFKKGERLQIVNNTEGDWWLAHS-LTTGRTGYIPS 51
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 FQIGDILQIISKDDH--NWWQARKDNVAGSAGLIPS 124
FQ GD + +ISK D +WW+ + + G G+ P+
Sbjct: 36 FQAGDRITVISKTDSHFDWWEGK---LRGQTGIFPA 68
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 165 REVVALMGAHALGKTHLKNS 184
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 80 DLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
+ IP + + ++GDI+ I + + WW +N GL PS ++E
Sbjct: 15 EYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN---KLGLFPSNFVKE 61
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 164 REVVALMGAHALGKTHLKNS 183
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 173 DLVTYEEV--VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVM 230
D Y E ++LPSF TL L+ G+ RR N I+ PVP +
Sbjct: 99 DPAQYAEAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPP-------V 151
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ 278
F KD W PSPE +E T +T EQ
Sbjct: 152 FYKSFKDGKTWTNG-----------APSPEFKEPDKRNHTWIRTNREQ 188
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 164 REVVALMGAHALGKTHLKNS 183
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 RKTLVLLGAHGVGRRHIKNT 207
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ + GDIL +++ + +WW K V G G +P+
Sbjct: 23 VTMKKGDILTLLNSTNKDWW---KTEVNGRQGFVPA 55
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 94 GDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
GDIL +++ + +WW K V G G +P+ L++
Sbjct: 28 GDILTLLNSTNKDWW---KIEVNGRQGFVPAAYLKK 60
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ I+ K+D +WW+AR + GS G IPS
Sbjct: 27 YIILEKNDLHWWRAR--DKYGSEGYIPS 52
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 99 IISKDDHNWWQARKDNVAGSAGLIPS 124
I+ K+D +WW+AR + GS G IPS
Sbjct: 29 ILEKNDLHWWRAR--DKYGSEGYIPS 52
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++F G+ QI+ +WW+AR G G IPS
Sbjct: 23 LSFHKGEKFQILEFGPGDWWEARS-LTTGETGYIPS 57
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
++F+ GD+L++ + +WW+ + G GLIP
Sbjct: 27 LSFRRGDVLRLHERASSDWWRGEHN---GMRGLIP 58
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 77 LDDDLIPCAQA----------GIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ D + CA+A + F+ GD+++++ + WW R VA G P+
Sbjct: 31 ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR---VADGEGWFPA 85
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSI 333
TTR R E +G Y+F + D + I +Q++EY + +
Sbjct: 41 TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYV 79
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
+AF+ GD++ I+ ++ W K + +G GL+ + L+E
Sbjct: 34 LAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRE 74
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 77 LDDDLIPCAQA----------GIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ D + CA+A + F+ GD+++++ + WW R VA G P+
Sbjct: 25 ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR---VADGEGWFPA 79
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 28.1 bits (61), Expect = 7.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 80 DLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ IP + + ++GDI+ I + + WW +N GL PS
Sbjct: 9 EYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN---KLGLFPS 50
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAG--IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
I V+A ++Y+ AQ G + F+ GD + + KD WW+ + G G +P
Sbjct: 4 IQVKALYDYD---------AQTGDELTFKEGDTIIVHQKDPAGWWEGE---LNGKRGWVP 51
Query: 124 SPELQE 129
+ +Q+
Sbjct: 52 ANYVQD 57
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAG--IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
I V+A ++Y+ AQ G + F+ GD + + KD WW+ + G G +P
Sbjct: 5 IQVKALYDYD---------AQTGDELTFKEGDTIIVHQKDPAGWWEGE---LNGKRGWVP 52
Query: 124 SPELQE 129
+ +Q+
Sbjct: 53 ANYVQD 58
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
A ++Y+P + +A + F GDI+ + + D + + + N G GL+PS L+E
Sbjct: 12 ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELN--GQKGLVPSNFLEE 69
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAG 117
++FQ G I+ +I K+D W++ + V G
Sbjct: 34 LSFQEGAIIYVIKKNDDGWYEGVMNGVTG 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,312,351
Number of Sequences: 62578
Number of extensions: 423401
Number of successful extensions: 1172
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 259
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)