Query psy12793
Match_columns 352
No_of_seqs 311 out of 2147
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:46:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 9.4E-51 2E-55 410.2 11.3 214 65-350 214-435 (542)
2 COG0194 Gmk Guanylate kinase [ 99.8 5.4E-20 1.2E-24 167.4 9.7 90 187-350 3-97 (191)
3 PF00625 Guanylate_kin: Guanyl 99.8 1.1E-19 2.4E-24 162.7 9.5 91 188-350 2-97 (183)
4 PRK14737 gmk guanylate kinase; 99.8 8.5E-19 1.8E-23 159.2 10.7 91 187-350 3-98 (186)
5 smart00072 GuKc Guanylate kina 99.7 8.1E-18 1.8E-22 151.2 10.5 92 187-350 1-97 (184)
6 PLN02772 guanylate kinase 99.7 1.2E-17 2.6E-22 167.3 10.4 104 175-350 118-230 (398)
7 KOG4792|consensus 99.6 4.8E-16 1E-20 144.6 8.2 105 19-134 76-184 (293)
8 PRK14738 gmk guanylate kinase; 99.6 5E-15 1.1E-19 135.9 10.4 93 185-350 10-107 (206)
9 KOG0708|consensus 99.5 1.1E-14 2.4E-19 143.6 5.8 184 66-347 67-262 (359)
10 KOG0707|consensus 99.5 3.5E-14 7.7E-19 132.9 7.3 96 184-351 33-133 (231)
11 cd00071 GMPK Guanosine monopho 99.5 1.2E-13 2.6E-18 119.4 10.1 89 190-350 1-94 (137)
12 KOG1029|consensus 99.4 6.5E-14 1.4E-18 147.1 5.7 156 88-259 922-1103(1118)
13 PRK00300 gmk guanylate kinase; 99.2 6.8E-11 1.5E-15 106.8 10.4 91 187-350 4-99 (205)
14 TIGR03263 guanyl_kin guanylate 99.2 9.3E-11 2E-15 103.7 10.1 90 188-350 1-95 (180)
15 KOG0609|consensus 99.1 6.3E-11 1.4E-15 121.6 4.5 93 224-322 239-337 (542)
16 PF14604 SH3_9: Variant SH3 do 99.0 2.3E-10 4.9E-15 83.0 4.1 49 70-128 1-49 (49)
17 PF00018 SH3_1: SH3 domain; I 99.0 5.3E-10 1.1E-14 80.1 4.7 48 69-124 1-48 (48)
18 PF07653 SH3_2: Variant SH3 do 98.9 1.4E-09 3E-14 80.1 4.1 53 67-129 1-54 (55)
19 KOG3580|consensus 98.9 1.6E-09 3.5E-14 112.3 5.7 196 66-272 505-730 (1027)
20 KOG4226|consensus 98.8 5.9E-09 1.3E-13 99.9 6.3 186 70-328 112-308 (379)
21 KOG2199|consensus 98.8 2E-09 4.3E-14 107.3 1.9 55 66-130 216-270 (462)
22 KOG4225|consensus 98.7 2.5E-08 5.4E-13 100.5 7.5 59 64-132 229-287 (489)
23 KOG4348|consensus 98.6 2.9E-08 6.2E-13 100.1 4.9 60 62-131 97-156 (627)
24 KOG4226|consensus 98.6 7.5E-08 1.6E-12 92.4 7.3 145 65-258 4-156 (379)
25 cd00174 SH3 Src homology 3 dom 98.6 6.8E-08 1.5E-12 68.2 5.2 52 68-128 2-53 (54)
26 smart00326 SH3 Src homology 3 98.6 7.6E-08 1.6E-12 68.7 4.8 53 67-128 4-56 (58)
27 KOG1029|consensus 98.6 1.7E-08 3.8E-13 107.0 2.0 53 68-130 1056-1108(1118)
28 KOG3632|consensus 98.6 6.1E-08 1.3E-12 105.0 5.7 96 30-129 1137-1306(1335)
29 KOG1118|consensus 98.5 3.2E-08 7E-13 96.1 2.5 56 64-129 305-360 (366)
30 TIGR02322 phosphon_PhnN phosph 98.5 5.1E-07 1.1E-11 80.0 9.3 53 295-350 38-94 (179)
31 KOG2070|consensus 98.4 2E-07 4.4E-12 95.3 3.9 57 65-131 17-73 (661)
32 PRK00091 miaA tRNA delta(2)-is 98.4 1.3E-07 2.8E-12 92.8 2.3 95 187-350 3-97 (307)
33 PRK10078 ribose 1,5-bisphospho 98.3 9.7E-07 2.1E-11 79.4 6.3 88 188-350 2-93 (186)
34 KOG4348|consensus 98.3 2.2E-07 4.9E-12 93.8 1.8 141 70-259 6-150 (627)
35 KOG3812|consensus 98.3 8.2E-07 1.8E-11 87.6 5.0 69 61-129 54-122 (475)
36 PRK08356 hypothetical protein; 98.2 8.5E-07 1.8E-11 80.5 2.4 40 295-334 36-75 (195)
37 KOG0162|consensus 97.8 1.3E-05 2.7E-10 85.5 4.2 59 61-129 1047-1105(1106)
38 KOG2856|consensus 97.8 9.8E-06 2.1E-10 80.7 1.5 55 66-129 415-470 (472)
39 KOG3875|consensus 97.7 6.2E-06 1.3E-10 80.5 -0.0 89 33-129 231-329 (362)
40 KOG0515|consensus 97.6 2.5E-05 5.3E-10 81.0 2.0 52 67-128 685-739 (752)
41 KOG3601|consensus 97.5 5E-05 1.1E-09 70.8 2.5 48 70-127 5-53 (222)
42 KOG2996|consensus 97.5 6.1E-05 1.3E-09 78.8 2.9 52 69-130 809-862 (865)
43 KOG3655|consensus 97.5 4.6E-05 1E-09 78.0 1.8 52 68-128 430-481 (484)
44 KOG3601|consensus 97.4 7E-05 1.5E-09 69.9 2.2 54 66-129 164-217 (222)
45 TIGR00174 miaA tRNA isopenteny 97.4 0.00023 4.9E-09 69.5 5.6 51 295-350 42-92 (287)
46 KOG3632|consensus 97.4 0.00012 2.6E-09 80.3 3.7 63 66-131 1139-1203(1335)
47 PF00018 SH3_1: SH3 domain; I 97.3 8.2E-05 1.8E-09 53.1 1.0 43 215-258 3-48 (48)
48 KOG0197|consensus 97.2 9.3E-05 2E-09 76.4 0.0 58 66-131 12-70 (468)
49 KOG1264|consensus 97.1 0.00023 4.9E-09 77.0 2.5 59 65-132 774-832 (1267)
50 KOG4225|consensus 97.1 0.00037 8E-09 71.0 3.2 54 67-128 434-487 (489)
51 KOG2546|consensus 97.1 0.00045 9.7E-09 70.2 3.6 53 67-129 425-477 (483)
52 PF14604 SH3_9: Variant SH3 do 96.8 0.00049 1.1E-08 49.7 0.9 40 216-258 3-45 (49)
53 KOG1843|consensus 96.7 0.00071 1.5E-08 68.5 2.0 58 61-128 411-471 (473)
54 PF07653 SH3_2: Variant SH3 do 96.7 0.00029 6.4E-09 51.6 -0.6 36 224-262 17-53 (55)
55 KOG2199|consensus 96.7 0.00074 1.6E-08 68.2 2.0 48 211-263 217-268 (462)
56 KOG2996|consensus 96.7 0.0022 4.7E-08 67.6 4.9 40 88-128 626-666 (865)
57 PLN02840 tRNA dimethylallyltra 96.5 0.0014 3E-08 67.3 2.3 95 187-350 20-114 (421)
58 COG3709 Uncharacterized compon 96.4 0.0072 1.6E-07 55.1 6.2 30 186-215 3-32 (192)
59 KOG4792|consensus 96.0 0.0047 1E-07 58.6 2.8 57 213-271 128-187 (293)
60 KOG4575|consensus 96.0 0.006 1.3E-07 64.8 3.8 54 66-127 9-62 (874)
61 KOG3557|consensus 95.9 0.0021 4.5E-08 68.2 -0.1 56 66-131 501-556 (721)
62 KOG1702|consensus 95.7 0.014 3.1E-07 54.6 4.4 54 67-128 209-262 (264)
63 COG0563 Adk Adenylate kinase a 95.5 0.0098 2.1E-07 54.1 2.9 22 190-211 2-23 (178)
64 PRK00098 GTPase RsgA; Reviewed 95.3 0.02 4.4E-07 55.7 4.4 27 187-213 163-189 (298)
65 cd00227 CPT Chloramphenicol (C 95.3 0.02 4.4E-07 50.8 4.0 29 188-216 2-30 (175)
66 PF13207 AAA_17: AAA domain; P 95.2 0.02 4.3E-07 47.0 3.3 23 190-212 1-23 (121)
67 smart00326 SH3 Src homology 3 94.7 0.017 3.7E-07 40.6 1.5 34 224-259 20-53 (58)
68 PF13671 AAA_33: AAA domain; P 94.4 0.044 9.4E-07 46.1 3.5 24 190-213 1-24 (143)
69 KOG3771|consensus 94.1 0.032 6.9E-07 57.6 2.6 43 66-115 401-444 (460)
70 cd00174 SH3 Src homology 3 dom 94.1 0.023 5E-07 39.5 1.0 35 224-260 17-51 (54)
71 PF13238 AAA_18: AAA domain; P 93.9 0.053 1.1E-06 44.2 3.1 22 191-212 1-22 (129)
72 PRK06762 hypothetical protein; 93.8 0.062 1.4E-06 46.8 3.6 27 187-213 1-27 (166)
73 PF03193 DUF258: Protein of un 93.8 0.066 1.4E-06 48.3 3.7 25 187-211 34-58 (161)
74 KOG4278|consensus 93.7 0.056 1.2E-06 58.3 3.6 54 68-131 93-147 (1157)
75 smart00382 AAA ATPases associa 93.4 0.1 2.2E-06 41.6 3.8 28 188-215 2-29 (148)
76 PRK08233 hypothetical protein; 93.2 0.095 2.1E-06 45.8 3.8 26 188-213 3-28 (182)
77 TIGR01360 aden_kin_iso1 adenyl 93.2 0.087 1.9E-06 46.3 3.5 25 188-212 3-27 (188)
78 KOG1118|consensus 93.2 0.043 9.2E-07 54.2 1.6 42 214-258 311-355 (366)
79 TIGR00235 udk uridine kinase. 93.1 0.096 2.1E-06 47.8 3.7 29 185-213 3-31 (207)
80 PHA02530 pseT polynucleotide k 93.0 0.098 2.1E-06 50.0 3.8 26 188-213 2-27 (300)
81 PRK00131 aroK shikimate kinase 93.0 0.13 2.7E-06 44.5 4.1 27 187-213 3-29 (175)
82 KOG2222|consensus 92.8 0.059 1.3E-06 56.1 2.0 55 69-133 552-606 (848)
83 cd03273 ABC_SMC2_euk Eukaryoti 92.8 0.13 2.8E-06 48.4 4.1 37 174-210 11-47 (251)
84 PRK08118 topology modulation p 92.7 0.11 2.5E-06 46.3 3.5 23 189-211 2-24 (167)
85 PRK14527 adenylate kinase; Pro 92.4 0.16 3.4E-06 45.7 4.0 26 187-212 5-30 (191)
86 PRK14531 adenylate kinase; Pro 92.3 0.14 3E-06 45.9 3.5 25 188-212 2-26 (183)
87 PF08477 Miro: Miro-like prote 92.1 0.15 3.2E-06 41.3 3.2 23 191-213 2-24 (119)
88 TIGR01359 UMP_CMP_kin_fam UMP- 92.1 0.13 2.8E-06 45.4 3.0 24 190-213 1-24 (183)
89 PRK03839 putative kinase; Prov 92.0 0.16 3.6E-06 44.9 3.6 23 190-212 2-24 (180)
90 PRK14530 adenylate kinase; Pro 92.0 0.17 3.7E-06 46.4 3.8 26 188-213 3-28 (215)
91 PRK06217 hypothetical protein; 91.9 0.17 3.6E-06 45.3 3.6 24 189-212 2-25 (183)
92 PF00004 AAA: ATPase family as 91.9 0.17 3.7E-06 41.4 3.3 22 191-212 1-22 (132)
93 cd00009 AAA The AAA+ (ATPases 91.8 0.2 4.3E-06 40.5 3.6 26 187-212 18-43 (151)
94 TIGR01313 therm_gnt_kin carboh 91.7 0.14 3.1E-06 44.4 2.9 23 191-213 1-23 (163)
95 PRK06761 hypothetical protein; 91.7 0.33 7.1E-06 47.5 5.6 27 188-214 3-29 (282)
96 cd02019 NK Nucleoside/nucleoti 91.7 0.18 3.9E-06 38.4 3.0 23 190-212 1-23 (69)
97 PLN02200 adenylate kinase fami 91.6 0.2 4.2E-06 47.4 3.9 39 174-212 28-67 (234)
98 PRK05541 adenylylsulfate kinas 91.5 0.23 5E-06 43.8 3.9 28 186-213 5-32 (176)
99 PF13555 AAA_29: P-loop contai 91.4 0.22 4.9E-06 38.1 3.3 22 189-210 24-45 (62)
100 PRK07261 topology modulation p 91.4 0.17 3.7E-06 45.2 3.1 22 190-211 2-23 (171)
101 PRK14532 adenylate kinase; Pro 91.4 0.18 3.9E-06 44.9 3.2 24 190-213 2-25 (188)
102 cd02021 GntK Gluconate kinase 91.3 0.17 3.7E-06 43.2 2.9 22 190-211 1-22 (150)
103 PRK00698 tmk thymidylate kinas 91.3 0.21 4.6E-06 44.6 3.6 25 188-212 3-27 (205)
104 cd01672 TMPK Thymidine monopho 91.2 0.21 4.5E-06 43.9 3.4 24 189-212 1-24 (200)
105 PF05729 NACHT: NACHT domain 91.2 0.22 4.7E-06 42.2 3.4 23 189-211 1-23 (166)
106 COG1126 GlnQ ABC-type polar am 91.2 0.19 4.2E-06 47.9 3.3 26 185-210 25-50 (240)
107 PRK14729 miaA tRNA delta(2)-is 91.0 0.062 1.4E-06 52.9 -0.1 24 188-211 4-27 (300)
108 cd03272 ABC_SMC3_euk Eukaryoti 91.0 0.23 4.9E-06 46.0 3.6 25 185-209 20-44 (243)
109 PF07931 CPT: Chloramphenicol 90.8 0.24 5.3E-06 45.0 3.5 28 188-215 1-28 (174)
110 PRK05057 aroK shikimate kinase 90.8 0.32 6.8E-06 43.5 4.1 25 188-212 4-28 (172)
111 PRK13947 shikimate kinase; Pro 90.8 0.29 6.2E-06 42.7 3.8 25 189-213 2-26 (171)
112 PRK13975 thymidylate kinase; P 90.7 0.26 5.7E-06 43.9 3.6 27 188-214 2-28 (196)
113 PRK06547 hypothetical protein; 90.7 0.28 6.2E-06 44.2 3.8 27 185-211 12-38 (172)
114 PLN02165 adenylate isopentenyl 90.6 0.31 6.6E-06 48.9 4.3 29 185-213 40-68 (334)
115 cd01428 ADK Adenylate kinase ( 90.6 0.24 5.2E-06 43.8 3.2 22 191-212 2-23 (194)
116 PF13401 AAA_22: AAA domain; P 90.6 0.24 5.1E-06 40.8 3.0 26 187-212 3-28 (131)
117 TIGR01351 adk adenylate kinase 90.6 0.23 5.1E-06 45.4 3.2 22 191-212 2-23 (210)
118 PF07728 AAA_5: AAA domain (dy 90.5 0.26 5.6E-06 41.5 3.2 25 190-214 1-25 (139)
119 KOG2070|consensus 90.4 0.15 3.2E-06 53.4 1.9 41 215-259 23-67 (661)
120 PF00005 ABC_tran: ABC transpo 90.3 0.19 4.2E-06 42.0 2.3 28 186-213 9-36 (137)
121 PRK05480 uridine/cytidine kina 90.3 0.31 6.8E-06 44.3 3.8 26 187-212 5-30 (209)
122 cd00464 SK Shikimate kinase (S 90.3 0.27 6E-06 41.7 3.2 24 190-213 1-24 (154)
123 TIGR00041 DTMP_kinase thymidyl 90.2 0.3 6.6E-06 43.5 3.6 26 188-213 3-28 (195)
124 cd04155 Arl3 Arl3 subfamily. 90.2 0.5 1.1E-05 40.6 4.8 25 188-212 14-38 (173)
125 cd02028 UMPK_like Uridine mono 90.2 0.56 1.2E-05 42.2 5.3 23 190-212 1-23 (179)
126 cd00820 PEPCK_HprK Phosphoenol 90.1 0.3 6.6E-06 41.2 3.2 24 186-209 13-36 (107)
127 COG3839 MalK ABC-type sugar tr 89.9 0.29 6.2E-06 49.2 3.4 140 185-328 26-206 (338)
128 PRK06696 uridine kinase; Valid 89.7 0.23 5E-06 46.0 2.4 27 187-213 21-47 (223)
129 cd02023 UMPK Uridine monophosp 89.6 0.29 6.2E-06 44.1 2.9 23 190-212 1-23 (198)
130 PTZ00088 adenylate kinase 1; P 89.4 0.3 6.6E-06 46.1 3.1 22 191-212 9-30 (229)
131 PF13173 AAA_14: AAA domain 89.4 0.45 9.7E-06 40.1 3.8 26 188-213 2-27 (128)
132 cd03240 ABC_Rad50 The catalyti 89.3 0.42 9E-06 43.9 3.8 35 174-209 9-43 (204)
133 PTZ00301 uridine kinase; Provi 89.3 0.38 8.1E-06 44.9 3.5 24 189-212 4-27 (210)
134 PRK04040 adenylate kinase; Pro 89.2 0.42 9.2E-06 43.6 3.7 26 188-213 2-27 (188)
135 cd04138 H_N_K_Ras_like H-Ras/N 89.2 0.35 7.7E-06 40.5 3.0 21 191-211 4-24 (162)
136 COG4525 TauB ABC-type taurine 89.1 0.37 8E-06 45.7 3.3 35 175-210 19-53 (259)
137 cd03237 ABC_RNaseL_inhibitor_d 89.0 0.5 1.1E-05 44.7 4.2 28 185-212 22-49 (246)
138 PRK14528 adenylate kinase; Pro 88.9 0.41 8.9E-06 43.2 3.4 24 189-212 2-25 (186)
139 TIGR01166 cbiO cobalt transpor 88.9 0.43 9.3E-06 42.6 3.5 28 185-212 15-42 (190)
140 cd01130 VirB11-like_ATPase Typ 88.9 0.47 1E-05 42.7 3.8 29 186-214 23-51 (186)
141 PRK13949 shikimate kinase; Pro 88.9 0.44 9.6E-06 42.5 3.6 24 189-212 2-25 (169)
142 PRK09825 idnK D-gluconate kina 88.9 0.44 9.5E-06 42.9 3.6 25 188-212 3-27 (176)
143 cd03262 ABC_HisP_GlnQ_permease 88.9 0.44 9.6E-06 43.1 3.6 28 186-213 24-51 (213)
144 cd04159 Arl10_like Arl10-like 88.8 0.33 7.1E-06 40.2 2.5 21 191-211 2-22 (159)
145 cd03238 ABC_UvrA The excision 88.8 0.42 9.2E-06 43.2 3.4 24 186-209 19-42 (176)
146 cd03292 ABC_FtsE_transporter F 88.8 0.44 9.5E-06 43.2 3.6 28 185-212 24-51 (214)
147 cd03258 ABC_MetN_methionine_tr 88.8 0.43 9.4E-06 43.9 3.6 28 186-213 29-56 (233)
148 cd03275 ABC_SMC1_euk Eukaryoti 88.8 0.51 1.1E-05 44.4 4.1 34 175-209 10-43 (247)
149 PRK00889 adenylylsulfate kinas 88.8 0.46 9.9E-06 41.9 3.6 26 187-212 3-28 (175)
150 cd03255 ABC_MJ0796_Lo1CDE_FtsE 88.8 0.44 9.5E-06 43.4 3.5 28 186-213 28-55 (218)
151 cd03225 ABC_cobalt_CbiO_domain 88.8 0.44 9.6E-06 43.1 3.6 27 186-212 25-51 (211)
152 cd02020 CMPK Cytidine monophos 88.7 0.44 9.6E-06 39.9 3.3 23 190-212 1-23 (147)
153 TIGR02211 LolD_lipo_ex lipopro 88.7 0.44 9.5E-06 43.5 3.5 28 186-213 29-56 (221)
154 PRK15177 Vi polysaccharide exp 88.6 0.44 9.5E-06 43.9 3.5 27 186-212 11-37 (213)
155 TIGR00960 3a0501s02 Type II (G 88.6 0.46 1E-05 43.3 3.5 28 185-212 26-53 (216)
156 PF00485 PRK: Phosphoribulokin 88.6 0.42 9E-06 43.2 3.2 25 190-214 1-25 (194)
157 smart00763 AAA_PrkA PrkA AAA d 88.6 0.43 9.3E-06 48.3 3.6 26 187-212 77-102 (361)
158 cd04161 Arl2l1_Arl13_like Arl2 88.5 0.44 9.6E-06 41.5 3.3 26 191-216 2-27 (167)
159 TIGR02315 ABC_phnC phosphonate 88.5 0.46 1E-05 43.9 3.6 27 186-212 26-52 (243)
160 PF13191 AAA_16: AAA ATPase do 88.5 0.4 8.6E-06 41.6 2.9 26 187-212 23-48 (185)
161 cd01131 PilT Pilus retraction 88.5 0.42 9.2E-06 43.6 3.2 24 190-213 3-26 (198)
162 PRK00454 engB GTP-binding prot 88.5 0.41 8.8E-06 42.2 3.0 32 180-211 16-47 (196)
163 cd03261 ABC_Org_Solvent_Resist 88.5 0.47 1E-05 43.9 3.6 28 185-212 23-50 (235)
164 TIGR03015 pepcterm_ATPase puta 88.4 0.52 1.1E-05 44.0 3.8 26 188-213 43-68 (269)
165 PRK02496 adk adenylate kinase; 88.4 0.42 9E-06 42.5 3.0 22 191-212 4-25 (184)
166 cd03259 ABC_Carb_Solutes_like 88.3 0.5 1.1E-05 42.9 3.6 28 185-212 23-50 (213)
167 COG1136 SalX ABC-type antimicr 88.2 0.47 1E-05 45.1 3.4 26 185-210 28-53 (226)
168 cd03226 ABC_cobalt_CbiO_domain 88.2 0.5 1.1E-05 42.7 3.5 27 186-212 24-50 (205)
169 cd03269 ABC_putative_ATPase Th 88.2 0.51 1.1E-05 42.7 3.6 29 185-213 23-51 (210)
170 cd03256 ABC_PhnC_transporter A 88.1 0.5 1.1E-05 43.6 3.6 28 185-212 24-51 (241)
171 KOG1451|consensus 88.1 0.4 8.7E-06 51.2 3.1 40 87-129 771-811 (812)
172 cd03263 ABC_subfamily_A The AB 88.0 0.52 1.1E-05 42.9 3.6 27 186-212 26-52 (220)
173 COG4778 PhnL ABC-type phosphon 88.0 0.49 1.1E-05 44.1 3.2 28 184-211 33-60 (235)
174 cd03257 ABC_NikE_OppD_transpor 88.0 0.51 1.1E-05 43.1 3.4 28 186-213 29-56 (228)
175 COG1162 Predicted GTPases [Gen 87.9 0.37 8.1E-06 47.7 2.6 26 186-211 162-187 (301)
176 PRK13946 shikimate kinase; Pro 87.9 0.68 1.5E-05 41.5 4.1 27 186-212 8-34 (184)
177 cd03224 ABC_TM1139_LivF_branch 87.8 0.5 1.1E-05 43.1 3.3 28 185-212 23-50 (222)
178 PRK00279 adk adenylate kinase; 87.8 0.52 1.1E-05 43.2 3.4 24 190-213 2-25 (215)
179 cd03298 ABC_ThiQ_thiamine_tran 87.8 0.57 1.2E-05 42.5 3.6 29 185-213 21-49 (211)
180 PRK03731 aroL shikimate kinase 87.8 0.66 1.4E-05 40.6 3.9 24 189-212 3-26 (171)
181 TIGR02673 FtsE cell division A 87.7 0.57 1.2E-05 42.5 3.5 27 186-212 26-52 (214)
182 cd00879 Sar1 Sar1 subfamily. 87.7 0.52 1.1E-05 41.4 3.2 25 189-213 20-44 (190)
183 cd03254 ABCC_Glucan_exporter_l 87.7 0.57 1.2E-05 43.0 3.6 29 185-213 26-54 (229)
184 PRK09270 nucleoside triphospha 87.7 0.58 1.3E-05 43.5 3.6 28 187-214 32-59 (229)
185 cd03219 ABC_Mj1267_LivG_branch 87.6 0.51 1.1E-05 43.5 3.3 27 186-212 24-50 (236)
186 PRK01184 hypothetical protein; 87.6 0.57 1.2E-05 41.6 3.4 22 189-211 2-23 (184)
187 PF07724 AAA_2: AAA domain (Cd 87.6 0.53 1.1E-05 42.4 3.2 22 190-211 5-26 (171)
188 TIGR03864 PQQ_ABC_ATP ABC tran 87.5 0.58 1.3E-05 43.3 3.6 28 185-212 24-51 (236)
189 TIGR02770 nickel_nikD nickel i 87.5 0.57 1.2E-05 43.3 3.5 28 186-213 10-37 (230)
190 PF14603 hSH3: Helically-exten 87.5 0.54 1.2E-05 38.5 2.9 40 87-128 31-70 (89)
191 cd04119 RJL RJL (RabJ-Like) su 87.5 0.5 1.1E-05 39.8 2.9 21 191-211 3-23 (168)
192 cd03301 ABC_MalK_N The N-termi 87.4 0.61 1.3E-05 42.3 3.6 28 185-212 23-50 (213)
193 COG0572 Udk Uridine kinase [Nu 87.4 0.62 1.3E-05 44.1 3.7 27 189-215 9-35 (218)
194 cd03222 ABC_RNaseL_inhibitor T 87.4 0.59 1.3E-05 42.4 3.5 27 186-212 23-49 (177)
195 PF13521 AAA_28: AAA domain; P 87.4 0.43 9.3E-06 41.6 2.5 21 191-211 2-22 (163)
196 smart00173 RAS Ras subfamily o 87.4 0.53 1.2E-05 40.0 3.0 21 191-211 3-23 (164)
197 cd04160 Arfrp1 Arfrp1 subfamil 87.4 0.55 1.2E-05 40.0 3.1 22 191-212 2-23 (167)
198 PF10662 PduV-EutP: Ethanolami 87.4 0.6 1.3E-05 41.4 3.4 24 189-212 2-25 (143)
199 cd03260 ABC_PstB_phosphate_tra 87.4 0.67 1.4E-05 42.5 3.8 28 185-212 23-50 (227)
200 TIGR03608 L_ocin_972_ABC putat 87.4 0.61 1.3E-05 42.0 3.5 28 186-213 22-49 (206)
201 COG1120 FepC ABC-type cobalami 87.3 0.56 1.2E-05 45.5 3.4 26 186-211 26-51 (258)
202 cd03265 ABC_DrrA DrrA is the A 87.3 0.62 1.4E-05 42.6 3.6 27 186-212 24-50 (220)
203 cd03293 ABC_NrtD_SsuB_transpor 87.3 0.59 1.3E-05 42.7 3.5 27 186-212 28-54 (220)
204 PLN02674 adenylate kinase 87.3 0.56 1.2E-05 44.9 3.4 24 189-212 32-55 (244)
205 PF01926 MMR_HSR1: 50S ribosom 87.2 0.55 1.2E-05 38.3 2.9 21 191-211 2-22 (116)
206 cd00876 Ras Ras family. The R 87.2 0.54 1.2E-05 39.3 2.9 21 191-211 2-22 (160)
207 PRK09087 hypothetical protein; 87.2 0.41 8.8E-06 44.9 2.4 37 176-212 32-68 (226)
208 TIGR02528 EutP ethanolamine ut 87.2 0.47 1E-05 39.6 2.5 23 190-212 2-24 (142)
209 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.1 0.63 1.4E-05 40.2 3.4 29 185-213 23-51 (144)
210 cd03295 ABC_OpuCA_Osmoprotecti 87.1 0.64 1.4E-05 43.2 3.6 29 185-213 24-52 (242)
211 cd03229 ABC_Class3 This class 87.1 0.67 1.5E-05 41.1 3.6 29 185-213 23-51 (178)
212 cd01876 YihA_EngB The YihA (En 87.1 0.52 1.1E-05 39.3 2.7 20 191-210 2-21 (170)
213 cd03246 ABCC_Protease_Secretio 87.1 0.73 1.6E-05 40.7 3.8 29 185-213 25-53 (173)
214 cd03234 ABCG_White The White s 87.1 0.6 1.3E-05 42.9 3.4 28 186-213 31-58 (226)
215 KOG2546|consensus 87.1 0.42 9.1E-06 49.2 2.5 47 208-258 422-472 (483)
216 cd03268 ABC_BcrA_bacitracin_re 87.1 0.65 1.4E-05 42.0 3.5 28 186-213 24-51 (208)
217 TIGR03574 selen_PSTK L-seryl-t 87.0 0.51 1.1E-05 44.3 2.9 23 190-212 1-23 (249)
218 PRK12339 2-phosphoglycerate ki 87.0 0.65 1.4E-05 42.8 3.6 25 188-212 3-27 (197)
219 PRK13541 cytochrome c biogenes 87.0 0.67 1.4E-05 41.7 3.6 29 185-213 23-51 (195)
220 cd03296 ABC_CysA_sulfate_impor 87.0 0.65 1.4E-05 43.1 3.6 28 185-212 25-52 (239)
221 KOG2528|consensus 87.0 0.26 5.7E-06 50.9 1.0 56 67-131 4-60 (490)
222 cd03235 ABC_Metallic_Cations A 87.0 0.6 1.3E-05 42.4 3.3 27 186-212 23-49 (213)
223 cd03218 ABC_YhbG The ABC trans 87.0 0.65 1.4E-05 42.7 3.5 27 186-212 24-50 (232)
224 cd03239 ABC_SMC_head The struc 87.0 0.83 1.8E-05 41.2 4.2 36 173-209 8-43 (178)
225 PRK10908 cell division protein 87.0 0.66 1.4E-05 42.5 3.6 29 185-213 25-53 (222)
226 PRK10584 putative ABC transpor 87.0 0.67 1.5E-05 42.5 3.6 27 186-212 34-60 (228)
227 TIGR03420 DnaA_homol_Hda DnaA 87.0 0.68 1.5E-05 42.0 3.6 27 186-212 36-62 (226)
228 PRK11629 lolD lipoprotein tran 87.0 0.66 1.4E-05 42.9 3.6 27 186-212 33-59 (233)
229 PRK11248 tauB taurine transpor 86.9 0.66 1.4E-05 43.9 3.6 29 185-213 24-52 (255)
230 cd03266 ABC_NatA_sodium_export 86.8 0.67 1.5E-05 42.2 3.5 28 186-213 29-56 (218)
231 PF00448 SRP54: SRP54-type pro 86.8 0.64 1.4E-05 42.8 3.4 23 189-211 2-24 (196)
232 cd03245 ABCC_bacteriocin_expor 86.8 0.69 1.5E-05 42.1 3.6 28 186-213 28-55 (220)
233 KOG0058|consensus 86.8 1 2.2E-05 49.3 5.2 62 187-258 493-556 (716)
234 PRK10247 putative ABC transpor 86.7 0.7 1.5E-05 42.6 3.6 27 186-212 31-57 (225)
235 TIGR01978 sufC FeS assembly AT 86.7 0.66 1.4E-05 42.9 3.5 26 186-211 24-49 (243)
236 PF06309 Torsin: Torsin; Inte 86.7 0.73 1.6E-05 40.2 3.4 26 186-211 49-76 (127)
237 KOG3523|consensus 86.6 0.23 4.9E-06 53.1 0.3 51 72-130 615-665 (695)
238 cd03230 ABC_DR_subfamily_A Thi 86.6 0.71 1.5E-05 40.8 3.5 28 186-213 24-51 (173)
239 cd03264 ABC_drug_resistance_li 86.6 0.64 1.4E-05 42.2 3.2 25 187-212 25-49 (211)
240 KOG3875|consensus 86.6 0.2 4.2E-06 49.7 -0.2 42 216-258 275-324 (362)
241 PF09439 SRPRB: Signal recogni 86.6 0.67 1.5E-05 42.6 3.3 25 187-211 2-26 (181)
242 cd01897 NOG NOG1 is a nucleola 86.5 0.66 1.4E-05 39.6 3.1 25 189-213 1-25 (168)
243 TIGR02323 CP_lyasePhnK phospho 86.5 0.67 1.5E-05 43.3 3.4 28 186-213 27-54 (253)
244 cd04113 Rab4 Rab4 subfamily. 86.5 0.62 1.3E-05 39.5 2.9 21 191-211 3-23 (161)
245 PF12775 AAA_7: P-loop contain 86.5 0.77 1.7E-05 44.4 3.9 28 186-213 31-58 (272)
246 PRK14242 phosphate transporter 86.5 0.68 1.5E-05 43.2 3.4 26 186-211 30-55 (253)
247 cd03216 ABC_Carb_Monos_I This 86.5 0.74 1.6E-05 40.5 3.5 29 185-213 23-51 (163)
248 PRK13539 cytochrome c biogenes 86.4 0.75 1.6E-05 41.9 3.6 29 185-213 25-53 (207)
249 PF13476 AAA_23: AAA domain; P 86.4 0.66 1.4E-05 40.5 3.1 24 187-210 18-41 (202)
250 PF06414 Zeta_toxin: Zeta toxi 86.4 0.75 1.6E-05 41.7 3.6 27 186-212 13-39 (199)
251 PRK10751 molybdopterin-guanine 86.4 0.82 1.8E-05 41.7 3.8 57 188-249 6-64 (173)
252 PRK11124 artP arginine transpo 86.4 0.74 1.6E-05 42.7 3.6 27 186-212 26-52 (242)
253 cd03283 ABC_MutS-like MutS-lik 86.4 0.65 1.4E-05 42.6 3.1 23 188-210 25-47 (199)
254 cd03214 ABC_Iron-Siderophores_ 86.3 0.79 1.7E-05 40.8 3.6 27 186-212 23-49 (180)
255 cd04139 RalA_RalB RalA/RalB su 86.3 0.64 1.4E-05 39.1 2.9 21 191-211 3-23 (164)
256 PRK08903 DnaA regulatory inact 86.3 0.77 1.7E-05 42.2 3.6 25 187-211 41-65 (227)
257 TIGR00157 ribosome small subun 86.2 0.7 1.5E-05 43.8 3.4 24 188-211 120-143 (245)
258 TIGR03410 urea_trans_UrtE urea 86.2 0.74 1.6E-05 42.3 3.5 28 186-213 24-51 (230)
259 PRK10895 lipopolysaccharide AB 86.2 0.75 1.6E-05 42.7 3.5 29 185-213 26-54 (241)
260 TIGR01189 ccmA heme ABC export 86.2 0.79 1.7E-05 41.3 3.6 28 186-213 24-51 (198)
261 PRK13540 cytochrome c biogenes 86.1 0.81 1.8E-05 41.3 3.6 29 185-213 24-52 (200)
262 PRK03846 adenylylsulfate kinas 86.1 0.84 1.8E-05 41.4 3.8 26 187-212 23-48 (198)
263 cd03223 ABCD_peroxisomal_ALDP 86.1 0.83 1.8E-05 40.3 3.6 29 185-213 24-52 (166)
264 PRK08099 bifunctional DNA-bind 86.1 0.75 1.6E-05 47.0 3.7 28 185-212 216-243 (399)
265 PRK14250 phosphate ABC transpo 86.1 0.77 1.7E-05 42.8 3.6 28 185-212 26-53 (241)
266 PRK10771 thiQ thiamine transpo 86.0 0.74 1.6E-05 42.5 3.4 29 185-213 22-50 (232)
267 TIGR01184 ntrCD nitrate transp 86.0 0.78 1.7E-05 42.5 3.5 28 186-213 9-36 (230)
268 PRK14529 adenylate kinase; Pro 86.0 0.64 1.4E-05 43.9 3.0 22 191-212 3-24 (223)
269 cd04163 Era Era subfamily. Er 86.0 0.68 1.5E-05 38.4 2.9 23 189-211 4-26 (168)
270 cd03247 ABCC_cytochrome_bd The 86.0 0.85 1.9E-05 40.4 3.6 28 186-213 26-53 (178)
271 PRK04182 cytidylate kinase; Pr 86.0 0.81 1.8E-05 39.8 3.4 23 190-212 2-24 (180)
272 cd03232 ABC_PDR_domain2 The pl 85.9 0.76 1.7E-05 41.4 3.3 26 186-211 31-56 (192)
273 PRK11264 putative amino-acid A 85.8 0.82 1.8E-05 42.5 3.6 27 186-212 27-53 (250)
274 COG3842 PotA ABC-type spermidi 85.8 0.72 1.6E-05 46.6 3.4 25 186-210 29-53 (352)
275 cd03251 ABCC_MsbA MsbA is an e 85.8 0.83 1.8E-05 42.0 3.6 28 186-213 26-53 (234)
276 PF00406 ADK: Adenylate kinase 85.7 0.63 1.4E-05 40.1 2.6 20 193-212 1-20 (151)
277 cd03274 ABC_SMC4_euk Eukaryoti 85.7 1 2.2E-05 41.7 4.2 21 189-209 26-46 (212)
278 PRK11300 livG leucine/isoleuci 85.7 0.74 1.6E-05 43.0 3.2 28 186-213 29-56 (255)
279 COG4161 ArtP ABC-type arginine 85.7 0.83 1.8E-05 42.3 3.4 25 184-208 24-48 (242)
280 PRK13538 cytochrome c biogenes 85.7 0.85 1.8E-05 41.3 3.6 28 186-213 25-52 (204)
281 TIGR02324 CP_lyasePhnL phospho 85.6 0.86 1.9E-05 41.7 3.6 28 185-212 31-58 (224)
282 cd03253 ABCC_ATM1_transporter 85.6 0.86 1.9E-05 42.0 3.6 29 185-213 24-52 (236)
283 cd03228 ABCC_MRP_Like The MRP 85.6 0.94 2E-05 40.0 3.7 29 185-213 25-53 (171)
284 COG1116 TauB ABC-type nitrate/ 85.6 0.77 1.7E-05 44.3 3.3 26 185-210 26-51 (248)
285 cd03279 ABC_sbcCD SbcCD and ot 85.5 0.95 2.1E-05 41.5 3.8 22 188-209 28-49 (213)
286 PRK12724 flagellar biosynthesi 85.5 0.54 1.2E-05 48.7 2.4 25 188-212 223-247 (432)
287 cd03369 ABCC_NFT1 Domain 2 of 85.5 0.92 2E-05 41.1 3.7 28 186-213 32-59 (207)
288 cd04129 Rho2 Rho2 subfamily. 85.5 0.83 1.8E-05 40.5 3.3 25 190-214 3-28 (187)
289 TIGR00231 small_GTP small GTP- 85.5 0.76 1.7E-05 37.3 2.9 23 190-212 3-25 (161)
290 cd03215 ABC_Carb_Monos_II This 85.5 0.84 1.8E-05 40.7 3.4 28 186-213 24-51 (182)
291 PF03215 Rad17: Rad17 cell cyc 85.5 0.77 1.7E-05 48.6 3.6 25 187-211 44-68 (519)
292 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 85.5 0.84 1.8E-05 42.2 3.5 28 185-212 45-72 (224)
293 PRK13645 cbiO cobalt transport 85.4 0.81 1.7E-05 44.0 3.5 28 186-213 35-62 (289)
294 smart00175 RAB Rab subfamily o 85.4 0.75 1.6E-05 38.8 2.9 21 191-211 3-23 (164)
295 PRK09493 glnQ glutamine ABC tr 85.4 0.87 1.9E-05 42.2 3.6 28 185-212 24-51 (240)
296 PRK14274 phosphate ABC transpo 85.4 0.94 2E-05 42.6 3.8 28 185-212 35-62 (259)
297 PRK10575 iron-hydroxamate tran 85.4 0.79 1.7E-05 43.4 3.3 28 186-213 35-62 (265)
298 cd03250 ABCC_MRP_domain1 Domai 85.3 0.92 2E-05 40.9 3.6 29 185-213 28-56 (204)
299 PRK13948 shikimate kinase; Pro 85.3 1.1 2.4E-05 40.8 4.1 26 187-212 9-34 (182)
300 PRK14267 phosphate ABC transpo 85.3 0.89 1.9E-05 42.5 3.6 27 186-212 28-54 (253)
301 PRK15056 manganese/iron transp 85.3 0.86 1.9E-05 43.4 3.5 27 186-212 31-57 (272)
302 cd03294 ABC_Pro_Gly_Bertaine T 85.3 0.89 1.9E-05 43.3 3.6 29 185-213 47-75 (269)
303 PRK14526 adenylate kinase; Pro 85.3 0.81 1.8E-05 42.6 3.3 22 191-212 3-24 (211)
304 TIGR00017 cmk cytidylate kinas 85.3 1 2.2E-05 42.1 3.9 25 189-213 3-27 (217)
305 cd04171 SelB SelB subfamily. 85.3 0.81 1.8E-05 38.5 3.0 23 190-212 2-24 (164)
306 TIGR01277 thiQ thiamine ABC tr 85.2 0.89 1.9E-05 41.4 3.5 29 185-213 21-49 (213)
307 COG4639 Predicted kinase [Gene 85.2 0.64 1.4E-05 42.2 2.5 24 188-211 2-25 (168)
308 cd01862 Rab7 Rab7 subfamily. 85.2 0.75 1.6E-05 39.2 2.8 21 191-211 3-23 (172)
309 cd03233 ABC_PDR_domain1 The pl 85.2 0.82 1.8E-05 41.6 3.2 28 186-213 31-58 (202)
310 COG1100 GTPase SAR1 and relate 85.2 0.76 1.6E-05 41.3 3.0 24 189-212 6-29 (219)
311 cd03252 ABCC_Hemolysin The ABC 85.1 0.91 2E-05 41.9 3.5 27 186-212 26-52 (237)
312 TIGR03005 ectoine_ehuA ectoine 85.1 0.9 1.9E-05 42.5 3.5 28 185-212 23-50 (252)
313 PRK13648 cbiO cobalt transport 85.1 0.91 2E-05 43.1 3.6 28 185-212 32-59 (269)
314 TIGR03598 GTPase_YsxC ribosome 85.1 0.91 2E-05 40.0 3.4 29 183-211 13-41 (179)
315 PRK14248 phosphate ABC transpo 85.1 0.89 1.9E-05 43.0 3.5 26 186-211 45-70 (268)
316 cd02025 PanK Pantothenate kina 85.1 0.7 1.5E-05 43.1 2.8 73 191-273 2-76 (220)
317 PRK11247 ssuB aliphatic sulfon 85.1 0.9 2E-05 43.2 3.6 27 186-212 36-62 (257)
318 TIGR02173 cyt_kin_arch cytidyl 85.0 1.1 2.3E-05 38.7 3.7 23 190-212 2-24 (171)
319 PRK14253 phosphate ABC transpo 85.0 1 2.2E-05 42.0 3.8 29 185-213 26-54 (249)
320 PRK14247 phosphate ABC transpo 85.0 0.95 2.1E-05 42.2 3.6 27 186-212 27-53 (250)
321 cd04146 RERG_RasL11_like RERG/ 85.0 0.79 1.7E-05 39.2 2.9 20 191-210 2-21 (165)
322 PRK14273 phosphate ABC transpo 85.0 0.93 2E-05 42.4 3.6 28 186-213 31-58 (254)
323 PRK13543 cytochrome c biogenes 85.0 0.94 2E-05 41.4 3.5 28 186-213 35-62 (214)
324 cd04156 ARLTS1 ARLTS1 subfamil 85.0 0.78 1.7E-05 38.8 2.8 22 191-212 2-23 (160)
325 cd04123 Rab21 Rab21 subfamily. 85.0 0.84 1.8E-05 38.2 3.0 21 191-211 3-23 (162)
326 cd03248 ABCC_TAP TAP, the Tran 85.0 0.99 2.1E-05 41.4 3.7 28 186-213 38-65 (226)
327 cd02024 NRK1 Nicotinamide ribo 85.0 0.88 1.9E-05 41.8 3.3 24 190-213 1-24 (187)
328 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 85.0 0.79 1.7E-05 39.2 2.9 21 191-211 5-25 (166)
329 cd03244 ABCC_MRP_domain2 Domai 85.0 0.99 2.1E-05 41.1 3.7 27 186-212 28-54 (221)
330 PRK13632 cbiO cobalt transport 84.9 0.94 2E-05 43.1 3.6 29 185-213 32-60 (271)
331 TIGR00972 3a0107s01c2 phosphat 84.9 0.97 2.1E-05 42.1 3.6 28 185-212 24-51 (247)
332 PRK11701 phnK phosphonate C-P 84.9 0.92 2E-05 42.6 3.5 27 186-212 30-56 (258)
333 cd00157 Rho Rho (Ras homology) 84.9 0.84 1.8E-05 38.8 3.0 22 191-212 3-24 (171)
334 cd04101 RabL4 RabL4 (Rab-like4 84.8 0.96 2.1E-05 38.4 3.3 20 191-210 3-22 (164)
335 TIGR01526 nadR_NMN_Atrans nico 84.8 0.87 1.9E-05 45.1 3.4 28 185-212 159-186 (325)
336 TIGR00455 apsK adenylylsulfate 84.7 1.1 2.4E-05 39.9 3.7 27 186-212 16-42 (184)
337 PRK05800 cobU adenosylcobinami 84.7 1.3 2.7E-05 39.9 4.2 25 189-213 2-26 (170)
338 TIGR03411 urea_trans_UrtD urea 84.7 0.96 2.1E-05 41.9 3.5 28 185-212 25-52 (242)
339 PRK13638 cbiO cobalt transport 84.7 0.9 1.9E-05 43.2 3.4 27 186-212 25-51 (271)
340 cd04136 Rap_like Rap-like subf 84.6 0.88 1.9E-05 38.4 3.0 22 190-211 3-24 (163)
341 cd03243 ABC_MutS_homologs The 84.6 0.93 2E-05 41.2 3.3 23 187-209 28-50 (202)
342 PRK10253 iron-enterobactin tra 84.6 0.88 1.9E-05 43.1 3.2 28 186-213 31-58 (265)
343 cd03267 ABC_NatA_like Similar 84.6 0.96 2.1E-05 42.1 3.4 27 186-212 45-71 (236)
344 TIGR01288 nodI ATP-binding ABC 84.6 0.96 2.1E-05 43.9 3.6 27 186-212 28-54 (303)
345 cd03249 ABC_MTABC3_MDL1_MDL2 M 84.6 1 2.2E-05 41.7 3.5 28 186-213 27-54 (238)
346 PRK13548 hmuV hemin importer A 84.5 0.96 2.1E-05 42.7 3.5 28 186-213 26-53 (258)
347 TIGR03740 galliderm_ABC gallid 84.5 1 2.2E-05 41.2 3.6 29 185-213 23-51 (223)
348 PRK10419 nikE nickel transport 84.5 0.97 2.1E-05 43.0 3.5 27 186-212 36-62 (268)
349 COG1419 FlhF Flagellar GTP-bin 84.5 0.52 1.1E-05 48.4 1.7 80 186-269 201-280 (407)
350 PRK15112 antimicrobial peptide 84.5 0.97 2.1E-05 42.9 3.5 29 185-213 36-64 (267)
351 COG0703 AroK Shikimate kinase 84.5 1.1 2.5E-05 40.9 3.8 25 188-212 2-26 (172)
352 cd01865 Rab3 Rab3 subfamily. 84.5 0.9 1.9E-05 39.1 3.0 22 191-212 4-25 (165)
353 cd01860 Rab5_related Rab5-rela 84.5 0.87 1.9E-05 38.5 2.9 22 191-212 4-25 (163)
354 PRK14240 phosphate transporter 84.5 0.99 2.1E-05 42.1 3.5 26 186-211 27-52 (250)
355 PRK10744 pstB phosphate transp 84.5 0.95 2.1E-05 42.7 3.4 27 186-212 37-63 (260)
356 cd03278 ABC_SMC_barmotin Barmo 84.5 1.1 2.5E-05 40.8 3.8 24 187-211 22-45 (197)
357 cd01870 RhoA_like RhoA-like su 84.4 0.98 2.1E-05 38.9 3.2 23 189-211 2-24 (175)
358 PRK11831 putative ABC transpor 84.4 0.99 2.1E-05 42.9 3.5 29 185-213 30-58 (269)
359 cd03297 ABC_ModC_molybdenum_tr 84.4 0.96 2.1E-05 41.1 3.3 26 186-212 22-47 (214)
360 PRK14262 phosphate ABC transpo 84.4 1 2.2E-05 42.1 3.5 28 185-212 26-53 (250)
361 PRK12289 GTPase RsgA; Reviewed 84.4 0.77 1.7E-05 46.2 2.9 24 188-211 172-195 (352)
362 PRK14239 phosphate transporter 84.4 0.99 2.1E-05 42.1 3.4 26 186-211 29-54 (252)
363 PRK14722 flhF flagellar biosyn 84.4 1 2.2E-05 45.8 3.7 27 186-212 135-161 (374)
364 PRK13547 hmuV hemin importer A 84.3 1 2.2E-05 43.3 3.5 28 186-213 25-52 (272)
365 cd04127 Rab27A Rab27a subfamil 84.3 0.86 1.9E-05 39.5 2.8 20 191-210 7-26 (180)
366 TIGR02769 nickel_nikE nickel i 84.3 1 2.2E-05 42.7 3.5 27 186-212 35-61 (265)
367 PRK14261 phosphate ABC transpo 84.3 1 2.2E-05 42.1 3.5 26 186-211 30-55 (253)
368 cd04115 Rab33B_Rab33A Rab33B/R 84.3 0.91 2E-05 39.3 2.9 85 190-274 4-104 (170)
369 TIGR03499 FlhF flagellar biosy 84.2 1 2.3E-05 43.5 3.6 26 187-212 193-218 (282)
370 PF04665 Pox_A32: Poxvirus A32 84.1 0.97 2.1E-05 43.3 3.3 27 190-216 15-41 (241)
371 cd03300 ABC_PotA_N PotA is an 84.1 1.1 2.3E-05 41.5 3.6 28 186-213 24-51 (232)
372 cd01867 Rab8_Rab10_Rab13_like 84.1 0.94 2E-05 39.0 3.0 22 190-211 5-26 (167)
373 PRK09984 phosphonate/organopho 84.1 1.1 2.3E-05 42.3 3.5 27 186-212 28-54 (262)
374 cd04162 Arl9_Arfrp2_like Arl9/ 84.1 0.93 2E-05 39.4 2.9 21 191-211 2-22 (164)
375 TIGR03771 anch_rpt_ABC anchore 84.1 1.1 2.4E-05 41.3 3.6 27 186-212 4-30 (223)
376 PRK08084 DNA replication initi 84.0 1.1 2.3E-05 42.1 3.5 24 188-211 45-68 (235)
377 PRK14259 phosphate ABC transpo 84.0 1.1 2.3E-05 42.8 3.5 29 185-213 36-64 (269)
378 PRK14255 phosphate ABC transpo 84.0 1.1 2.3E-05 41.9 3.5 26 186-211 29-54 (252)
379 cd01861 Rab6 Rab6 subfamily. 84.0 0.96 2.1E-05 38.2 2.9 22 191-212 3-24 (161)
380 TIGR02788 VirB11 P-type DNA tr 84.0 1.1 2.3E-05 43.9 3.6 30 186-215 142-171 (308)
381 cd01864 Rab19 Rab19 subfamily. 84.0 0.94 2E-05 38.8 2.9 22 189-210 4-25 (165)
382 PRK14235 phosphate transporter 84.0 1.2 2.6E-05 42.3 3.9 28 185-212 42-69 (267)
383 cd00154 Rab Rab family. Rab G 84.0 1.1 2.3E-05 36.9 3.1 22 191-212 3-24 (159)
384 PRK10418 nikD nickel transport 84.0 1.1 2.4E-05 42.1 3.6 29 185-213 26-54 (254)
385 PRK14249 phosphate ABC transpo 84.0 1.1 2.4E-05 41.8 3.6 28 186-213 28-55 (251)
386 PRK14241 phosphate transporter 83.9 1.1 2.3E-05 42.2 3.4 27 186-212 28-54 (258)
387 PRK13649 cbiO cobalt transport 83.9 1 2.2E-05 42.9 3.4 28 185-212 30-57 (280)
388 cd04154 Arl2 Arl2 subfamily. 83.9 1 2.3E-05 39.0 3.2 24 189-212 15-38 (173)
389 TIGR01188 drrA daunorubicin re 83.9 1.1 2.3E-05 43.5 3.6 27 186-212 17-43 (302)
390 cd03217 ABC_FeS_Assembly ABC-t 83.9 1.1 2.4E-05 40.6 3.5 26 186-211 24-49 (200)
391 PRK12288 GTPase RsgA; Reviewed 83.8 0.72 1.6E-05 46.3 2.4 24 188-211 205-228 (347)
392 cd03290 ABCC_SUR1_N The SUR do 83.8 1.2 2.5E-05 40.7 3.6 27 186-212 25-51 (218)
393 KOG0744|consensus 83.8 1.3 2.7E-05 44.9 4.0 70 187-269 176-246 (423)
394 PRK09580 sufC cysteine desulfu 83.8 1 2.2E-05 41.8 3.2 26 186-211 25-50 (248)
395 cd04114 Rab30 Rab30 subfamily. 83.8 1 2.2E-05 38.5 3.0 22 189-210 8-29 (169)
396 PRK11231 fecE iron-dicitrate t 83.7 1.1 2.4E-05 42.0 3.5 28 186-213 26-53 (255)
397 PRK10619 histidine/lysine/argi 83.7 1.1 2.5E-05 42.0 3.6 29 185-213 28-56 (257)
398 PF08298 AAA_PrkA: PrkA AAA do 83.7 1 2.2E-05 45.6 3.4 26 186-211 86-111 (358)
399 PF03205 MobB: Molybdopterin g 83.7 1.1 2.5E-05 38.9 3.3 23 190-212 2-24 (140)
400 PRK03695 vitamin B12-transport 83.6 1 2.3E-05 42.2 3.2 28 186-213 20-47 (248)
401 cd04124 RabL2 RabL2 subfamily. 83.6 1 2.2E-05 38.7 3.0 21 191-211 3-23 (161)
402 PRK14256 phosphate ABC transpo 83.6 1.2 2.6E-05 41.7 3.6 27 186-212 28-54 (252)
403 cd04107 Rab32_Rab38 Rab38/Rab3 83.6 0.94 2E-05 40.6 2.8 21 191-211 3-23 (201)
404 cd03213 ABCG_EPDR ABCG transpo 83.5 1.2 2.5E-05 40.3 3.4 27 186-212 33-59 (194)
405 PRK14237 phosphate transporter 83.5 1.3 2.7E-05 42.1 3.8 28 185-212 43-70 (267)
406 PRK11614 livF leucine/isoleuci 83.4 1 2.3E-05 41.6 3.2 27 186-212 29-55 (237)
407 PRK13647 cbiO cobalt transport 83.4 1.2 2.5E-05 42.7 3.5 28 185-212 28-55 (274)
408 PRK09544 znuC high-affinity zi 83.4 1.2 2.6E-05 42.2 3.6 28 185-212 27-54 (251)
409 TIGR02868 CydC thiol reductant 83.4 1.1 2.3E-05 46.6 3.6 27 186-212 359-385 (529)
410 PRK06893 DNA replication initi 83.4 1.1 2.5E-05 41.7 3.4 23 189-211 40-62 (229)
411 cd04164 trmE TrmE (MnmE, ThdF, 83.4 1.2 2.6E-05 36.9 3.3 22 190-211 3-24 (157)
412 CHL00131 ycf16 sulfate ABC tra 83.3 1 2.3E-05 41.9 3.1 26 186-211 31-56 (252)
413 cd01120 RecA-like_NTPases RecA 83.3 1 2.3E-05 37.5 2.9 22 191-212 2-23 (165)
414 COG1428 Deoxynucleoside kinase 83.3 1.2 2.6E-05 42.1 3.5 26 188-213 4-29 (216)
415 PRK13646 cbiO cobalt transport 83.3 1.2 2.6E-05 42.9 3.5 28 186-213 31-58 (286)
416 cd04157 Arl6 Arl6 subfamily. 83.3 0.93 2E-05 38.2 2.5 21 191-211 2-22 (162)
417 TIGR00073 hypB hydrogenase acc 83.3 1.1 2.4E-05 40.9 3.2 28 186-213 20-47 (207)
418 cd01887 IF2_eIF5B IF2/eIF5B (i 83.3 1.1 2.4E-05 38.0 3.0 22 190-211 2-23 (168)
419 PRK14269 phosphate ABC transpo 83.2 1.2 2.6E-05 41.6 3.4 26 186-211 26-51 (246)
420 PRK00625 shikimate kinase; Pro 83.1 1.2 2.7E-05 40.1 3.4 23 190-212 2-24 (173)
421 cd00877 Ran Ran (Ras-related n 83.1 1.1 2.4E-05 39.0 3.0 21 191-211 3-23 (166)
422 cd01898 Obg Obg subfamily. Th 83.1 1.1 2.3E-05 38.3 2.8 22 191-212 3-24 (170)
423 PRK14244 phosphate ABC transpo 83.1 1.2 2.7E-05 41.5 3.6 28 185-212 28-55 (251)
424 cd04145 M_R_Ras_like M-Ras/R-R 83.1 1.1 2.4E-05 37.8 3.0 22 190-211 4-25 (164)
425 PTZ00132 GTP-binding nuclear p 83.1 1.1 2.3E-05 40.8 3.0 28 189-216 10-38 (215)
426 PF00910 RNA_helicase: RNA hel 83.1 1 2.2E-05 37.0 2.6 21 191-211 1-21 (107)
427 cd03227 ABC_Class2 ABC-type Cl 83.0 1.6 3.5E-05 38.3 4.1 23 186-208 19-41 (162)
428 COG3638 ABC-type phosphate/pho 83.0 1.2 2.5E-05 43.1 3.3 26 186-211 28-53 (258)
429 cd02027 APSK Adenosine 5'-phos 83.0 1.1 2.3E-05 39.1 2.9 23 190-212 1-23 (149)
430 PRK14260 phosphate ABC transpo 83.0 1.3 2.9E-05 41.6 3.8 28 185-212 30-57 (259)
431 PF00071 Ras: Ras family; Int 83.0 1.1 2.5E-05 37.8 3.0 29 191-219 2-31 (162)
432 PHA00729 NTP-binding motif con 83.0 1.1 2.4E-05 42.6 3.2 23 189-211 18-40 (226)
433 COG1125 OpuBA ABC-type proline 83.0 1.1 2.4E-05 43.9 3.2 68 185-263 24-94 (309)
434 TIGR02881 spore_V_K stage V sp 83.0 1.4 3E-05 41.8 3.8 25 187-211 41-65 (261)
435 TIGR00968 3a0106s01 sulfate AB 82.9 1.3 2.8E-05 41.1 3.6 29 185-213 23-51 (237)
436 PRK14270 phosphate ABC transpo 82.9 1.3 2.8E-05 41.4 3.6 27 186-212 28-54 (251)
437 PF03266 NTPase_1: NTPase; In 82.9 1.2 2.6E-05 40.1 3.2 22 191-212 2-23 (168)
438 cd00267 ABC_ATPase ABC (ATP-bi 82.9 1.3 2.9E-05 38.2 3.4 28 186-213 23-50 (157)
439 cd01868 Rab11_like Rab11-like. 82.9 1.1 2.4E-05 38.2 2.8 22 190-211 5-26 (165)
440 PLN02748 tRNA dimethylallyltra 82.9 1.4 3E-05 46.2 4.1 28 186-213 20-47 (468)
441 PRK13641 cbiO cobalt transport 82.8 1.2 2.7E-05 42.7 3.5 29 185-213 30-58 (287)
442 PRK11144 modC molybdate transp 82.8 1.2 2.7E-05 44.3 3.6 27 186-212 22-48 (352)
443 TIGR01186 proV glycine betaine 82.8 1.1 2.5E-05 45.1 3.4 29 185-213 16-44 (363)
444 TIGR00101 ureG urease accessor 82.8 1.3 2.8E-05 40.7 3.5 25 190-214 3-27 (199)
445 PRK14266 phosphate ABC transpo 82.8 1.3 2.9E-05 41.3 3.6 27 185-211 26-52 (250)
446 PF13245 AAA_19: Part of AAA d 82.7 1.6 3.5E-05 34.2 3.5 23 188-210 10-32 (76)
447 TIGR00176 mobB molybdopterin-g 82.7 1.2 2.5E-05 39.5 3.0 23 191-213 2-24 (155)
448 PLN02459 probable adenylate ki 82.7 1.1 2.3E-05 43.5 3.0 23 190-212 31-53 (261)
449 PRK13851 type IV secretion sys 82.7 1.2 2.6E-05 44.7 3.5 29 186-214 160-188 (344)
450 cd01878 HflX HflX subfamily. 82.7 1.1 2.3E-05 40.1 2.8 25 188-212 41-65 (204)
451 PRK14245 phosphate ABC transpo 82.7 1.3 2.8E-05 41.4 3.4 25 186-210 27-51 (250)
452 COG3172 NadR Predicted ATPase/ 82.6 1.2 2.5E-05 40.9 3.0 30 185-214 5-34 (187)
453 PRK13639 cbiO cobalt transport 82.6 1.3 2.7E-05 42.4 3.4 29 185-213 25-53 (275)
454 PRK14251 phosphate ABC transpo 82.6 1.3 2.9E-05 41.2 3.5 27 186-212 28-54 (251)
455 cd03236 ABC_RNaseL_inhibitor_d 82.6 1.3 2.9E-05 42.1 3.6 28 186-213 24-51 (255)
456 COG1131 CcmA ABC-type multidru 82.6 1.2 2.6E-05 43.4 3.4 27 186-212 29-55 (293)
457 PRK14272 phosphate ABC transpo 82.6 1.4 3E-05 41.1 3.6 27 186-212 28-54 (252)
458 PRK14268 phosphate ABC transpo 82.6 1.3 2.8E-05 41.7 3.5 28 185-212 35-62 (258)
459 PRK07667 uridine kinase; Provi 82.6 1.3 2.8E-05 40.2 3.4 25 189-213 18-42 (193)
460 PRK13546 teichoic acids export 82.5 1.3 2.8E-05 42.3 3.5 29 185-213 47-75 (264)
461 PRK14252 phosphate ABC transpo 82.4 1.3 2.9E-05 41.8 3.5 26 186-211 40-65 (265)
462 PRK11432 fbpC ferric transport 82.4 1.3 2.8E-05 44.3 3.6 28 185-212 29-56 (351)
463 COG1102 Cmk Cytidylate kinase 82.3 1.2 2.6E-05 40.9 2.9 23 190-212 2-24 (179)
464 TIGR02142 modC_ABC molybdenum 82.3 1.3 2.9E-05 44.0 3.6 28 185-212 20-47 (354)
465 PRK06620 hypothetical protein; 82.3 1.4 3E-05 41.0 3.5 23 189-211 45-67 (214)
466 PRK13635 cbiO cobalt transport 82.3 1.4 3E-05 42.3 3.6 29 185-213 30-58 (279)
467 TIGR00150 HI0065_YjeE ATPase, 82.3 1.6 3.4E-05 38.2 3.6 26 187-212 21-46 (133)
468 cd03116 MobB Molybdenum is an 82.3 1.5 3.2E-05 39.2 3.5 26 189-214 2-27 (159)
469 cd04110 Rab35 Rab35 subfamily. 82.2 1.1 2.5E-05 40.2 2.9 23 189-211 7-29 (199)
470 PRK14275 phosphate ABC transpo 82.2 1.3 2.9E-05 42.5 3.5 27 185-211 62-88 (286)
471 PRK14243 phosphate transporter 82.2 1.4 3E-05 41.7 3.6 26 186-211 34-59 (264)
472 TIGR03873 F420-0_ABC_ATP propo 82.2 1.3 2.9E-05 41.5 3.4 28 186-213 25-52 (256)
473 cd04118 Rab24 Rab24 subfamily. 82.1 1.2 2.7E-05 39.2 3.0 22 191-212 3-24 (193)
474 cd01863 Rab18 Rab18 subfamily. 82.1 1.2 2.7E-05 37.6 2.9 21 191-211 3-23 (161)
475 COG1121 ZnuC ABC-type Mn/Zn tr 82.1 1.4 3E-05 42.7 3.5 26 185-210 27-52 (254)
476 PRK11000 maltose/maltodextrin 82.1 1.3 2.8E-05 44.5 3.5 27 186-212 27-53 (369)
477 PF00437 T2SE: Type II/IV secr 82.0 1.2 2.6E-05 42.0 3.1 29 187-215 126-154 (270)
478 PRK11650 ugpC glycerol-3-phosp 82.0 1.3 2.9E-05 44.3 3.5 28 185-212 27-54 (356)
479 PRK13652 cbiO cobalt transport 82.0 1.4 3E-05 42.1 3.5 27 186-212 28-54 (277)
480 PRK00081 coaE dephospho-CoA ki 82.0 1.5 3.2E-05 39.9 3.5 23 188-210 2-24 (194)
481 PRK08727 hypothetical protein; 82.0 1.4 3E-05 41.3 3.4 22 189-210 42-63 (233)
482 cd03280 ABC_MutS2 MutS2 homolo 82.0 1.3 2.8E-05 40.2 3.1 21 189-209 29-49 (200)
483 cd04177 RSR1 RSR1 subgroup. R 81.9 1.3 2.8E-05 38.2 3.0 21 191-211 4-24 (168)
484 cd00878 Arf_Arl Arf (ADP-ribos 81.9 1.5 3.3E-05 37.0 3.3 24 191-214 2-25 (158)
485 PRK10851 sulfate/thiosulfate t 81.9 1.4 3E-05 44.1 3.6 27 186-212 26-52 (353)
486 TIGR03265 PhnT2 putative 2-ami 81.8 1.4 3E-05 44.1 3.5 27 186-212 28-54 (353)
487 TIGR00635 ruvB Holliday juncti 81.8 1.6 3.4E-05 41.8 3.8 26 188-213 30-55 (305)
488 PRK13537 nodulation ABC transp 81.8 1.4 3E-05 43.1 3.4 27 186-212 31-57 (306)
489 PRK13640 cbiO cobalt transport 81.7 1.5 3.2E-05 42.2 3.5 27 186-212 31-57 (282)
490 cd04122 Rab14 Rab14 subfamily. 81.7 1.3 2.8E-05 38.1 2.8 21 191-211 5-25 (166)
491 PRK13650 cbiO cobalt transport 81.6 1.5 3.2E-05 42.1 3.5 28 185-212 30-57 (279)
492 PRK05416 glmZ(sRNA)-inactivati 81.6 1.4 3.1E-05 43.1 3.4 24 186-209 4-27 (288)
493 PRK13536 nodulation factor exp 81.6 1.4 3.1E-05 43.8 3.5 28 185-212 64-91 (340)
494 PRK14265 phosphate ABC transpo 81.6 1.5 3.2E-05 41.9 3.5 26 186-211 44-69 (274)
495 PRK15455 PrkA family serine pr 81.6 1.2 2.7E-05 48.0 3.2 24 187-210 102-125 (644)
496 PF02463 SMC_N: RecF/RecN/SMC 81.5 1.5 3.2E-05 40.0 3.4 22 187-208 23-44 (220)
497 PRK14271 phosphate ABC transpo 81.5 1.5 3.3E-05 41.9 3.6 28 186-213 45-72 (276)
498 cd03291 ABCC_CFTR1 The CFTR su 81.5 1.5 3.3E-05 42.5 3.6 29 185-213 60-88 (282)
499 PRK13644 cbiO cobalt transport 81.5 1.5 3.2E-05 41.9 3.5 27 186-212 26-52 (274)
500 cd04104 p47_IIGP_like p47 (47- 81.5 1.3 2.8E-05 40.1 2.9 21 191-211 4-24 (197)
No 1
>KOG0609|consensus
Probab=100.00 E-value=9.4e-51 Score=410.22 Aligned_cols=214 Identities=54% Similarity=0.922 Sum_probs=196.2
Q ss_pred eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC--CCceeeecCChhHHHHhhhcccccccc
Q psy12793 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV--AGSAGLIPSPELQEWRTACSTIDKTKH 142 (352)
Q Consensus 65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~--~g~~GlIPS~~v~e~r~a~~~~~~~~~ 142 (352)
.+|+||+|||||.+|+.|||+|++|+|++||||+|++++|.+||||++.++ .+.+|+|||+.+++++.++.....++.
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~ 293 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKE 293 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccC
Confidence 389999999999999999999999999999999999999999999999874 578999999999999999876544322
Q ss_pred c-cccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccc
Q psy12793 143 E-QVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221 (352)
Q Consensus 143 ~-~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~ 221 (352)
. ...|.++++|||..+.+|+.++++.+++.++++||||++|+++.+|+|||+||+|||+++|+++|+..+|++|+++||
T Consensus 294 ~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VP 373 (542)
T KOG0609|consen 294 PEKTRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVP 373 (542)
T ss_pred CcCchhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCC
Confidence 2 237888888877677779999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCC
Q psy12793 222 QFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRS 301 (352)
Q Consensus 222 ~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~ 301 (352)
| |||+||+
T Consensus 374 h------------------------------------------------------------------------TtR~~r~ 381 (542)
T KOG0609|consen 374 H------------------------------------------------------------------------TTRPPRS 381 (542)
T ss_pred C------------------------------------------------------------------------cCCCCCC
Confidence 9 9999999
Q ss_pred CCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHHcCcccc
Q psy12793 302 DEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVSCRKLVV 350 (352)
Q Consensus 302 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 350 (352)
+|.||++|||||+++|+.+|++|+|||||+.-. ...++|.++..||..|
T Consensus 382 ~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicv 435 (542)
T KOG0609|consen 382 DEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICV 435 (542)
T ss_pred CCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEE
Confidence 999999999999999999999999999998754 4689999999998765
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.81 E-value=5.4e-20 Score=167.39 Aligned_cols=90 Identities=28% Similarity=0.487 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 266 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~ 266 (352)
++.++||+|||||||+||.++|.+.+ .|.+++++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~-------------------------------------------- 36 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSA-------------------------------------------- 36 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEe--------------------------------------------
Confidence 57899999999999999999999988 68899999
Q ss_pred HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793 267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH 341 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 341 (352)
|||+||++|.||++|||||++||+.+|.+++||||++... ..+.++.
T Consensus 37 ----------------------------TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~ 88 (191)
T COG0194 37 ----------------------------TTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREPVEQ 88 (191)
T ss_pred ----------------------------ccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHHHHHH
Confidence 9999999999999999999999999999999999998876 4588999
Q ss_pred HHHcCcccc
Q psy12793 342 IVSCRKLVV 350 (352)
Q Consensus 342 ~~~~~~~~~ 350 (352)
++..|+.||
T Consensus 89 ~~~~G~~vi 97 (191)
T COG0194 89 ALAEGKDVI 97 (191)
T ss_pred HHhcCCeEE
Confidence 999999876
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.80 E-value=1.1e-19 Score=162.74 Aligned_cols=91 Identities=33% Similarity=0.615 Sum_probs=80.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA 267 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~ 267 (352)
+|+|||+||+||||++|.++|+..+|+.|.+++++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~--------------------------------------------- 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH--------------------------------------------- 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE---------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee---------------------------------------------
Confidence 68999999999999999999999999999999999
Q ss_pred HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHH
Q psy12793 268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHI 342 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 342 (352)
|||+||++|.||.+|||||+++|++++++++||||++.-. +..+++.+
T Consensus 37 ---------------------------TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~~~i~~~ 89 (183)
T PF00625_consen 37 ---------------------------TTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSKSAIDKV 89 (183)
T ss_dssp ---------------------------ESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEEEHHHHHHH
T ss_pred ---------------------------cccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhhccchhhHh
Confidence 9999999999999999999999999999999999997532 45888999
Q ss_pred HHcCcccc
Q psy12793 343 VSCRKLVV 350 (352)
Q Consensus 343 ~~~~~~~~ 350 (352)
+..|+.+|
T Consensus 90 ~~~gk~~i 97 (183)
T PF00625_consen 90 LEEGKHCI 97 (183)
T ss_dssp HHTTTEEE
T ss_pred hhcCCcEE
Confidence 99998875
No 4
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.78 E-value=8.5e-19 Score=159.23 Aligned_cols=91 Identities=23% Similarity=0.478 Sum_probs=82.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 266 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~ 266 (352)
.+++|||+|||||||+||.++|++.+|+. .+++++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~-------------------------------------------- 37 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISC-------------------------------------------- 37 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCc--------------------------------------------
Confidence 46899999999999999999999999884 577888
Q ss_pred HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793 267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH 341 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 341 (352)
|||+||++|.||++|||||+++|+.+|++++||||++... ....++.
T Consensus 38 ----------------------------TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~~i~~ 89 (186)
T PRK14737 38 ----------------------------TTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIED 89 (186)
T ss_pred ----------------------------cCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHHHHHH
Confidence 9999999999999999999999999999999999998554 3466889
Q ss_pred HHHcCcccc
Q psy12793 342 IVSCRKLVV 350 (352)
Q Consensus 342 ~~~~~~~~~ 350 (352)
++..|+.+|
T Consensus 90 ~~~~g~~~i 98 (186)
T PRK14737 90 AFKEGRSAI 98 (186)
T ss_pred HHHcCCeEE
Confidence 999999875
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.74 E-value=8.1e-18 Score=151.18 Aligned_cols=92 Identities=34% Similarity=0.591 Sum_probs=84.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 266 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~ 266 (352)
++++|||+|||||||+|+.++|+..+|+.|.+++++
T Consensus 1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~-------------------------------------------- 36 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSH-------------------------------------------- 36 (184)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeee--------------------------------------------
Confidence 368999999999999999999999999889999999
Q ss_pred HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793 267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH 341 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 341 (352)
|||++|++|.+|.+|+|+|+++|+++|++++|+||++... +.++++.
T Consensus 37 ----------------------------TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~~ 88 (184)
T smart00072 37 ----------------------------TTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKETIRQ 88 (184)
T ss_pred ----------------------------cCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHHHHHH
Confidence 9999999999999999999999999999999999998766 4567888
Q ss_pred HHHcCcccc
Q psy12793 342 IVSCRKLVV 350 (352)
Q Consensus 342 ~~~~~~~~~ 350 (352)
++..++.+|
T Consensus 89 ~~~~~~~~i 97 (184)
T smart00072 89 VAEQGKHCL 97 (184)
T ss_pred HHHcCCeEE
Confidence 888888765
No 6
>PLN02772 guanylate kinase
Probab=99.73 E-value=1.2e-17 Score=167.28 Aligned_cols=104 Identities=26% Similarity=0.464 Sum_probs=93.9
Q ss_pred ccceeeEeccC----CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCC
Q psy12793 175 VTYEEVVKLPS----FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVA 250 (352)
Q Consensus 175 ~sYEeV~~~p~----~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~ 250 (352)
..-|||+.+++ ..+++|||+|||||||+||.++|+..+|..|.++++|
T Consensus 118 ~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vsh---------------------------- 169 (398)
T PLN02772 118 LLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSH---------------------------- 169 (398)
T ss_pred cccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccc----------------------------
Confidence 45789998862 3678999999999999999999999999889999999
Q ss_pred CCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEE
Q psy12793 251 GSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 330 (352)
Q Consensus 251 ~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (352)
|||+||++|.||.+|||+|+++|+.++++++|+||+
T Consensus 170 --------------------------------------------TTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~ 205 (398)
T PLN02772 170 --------------------------------------------TTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA 205 (398)
T ss_pred --------------------------------------------cCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence 999999999999999999999999999999999999
Q ss_pred eecc-----ChhhHHHHHHcCcccc
Q psy12793 331 KSIL-----THPSQRHIVSCRKLVV 350 (352)
Q Consensus 331 ~~~~-----~~~~~~~~~~~~~~~~ 350 (352)
+... ...+++.++..|+.+|
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vI 230 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCI 230 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEE
Confidence 8765 3578889999998876
No 7
>KOG4792|consensus
Probab=99.63 E-value=4.8e-16 Score=144.57 Aligned_cols=105 Identities=29% Similarity=0.578 Sum_probs=87.6
Q ss_pred ccccCCCCCCcccc--ceeeec-ccCCCCCCCCCccccc-CcccccccceeeeeeeccccCCCCCCCCcCcCcccccccC
Q psy12793 19 SRKEGDRYLSTYLQ--IFVRAQ-FNYNPLDDDLIPCAQA-GIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIG 94 (352)
Q Consensus 19 ~~~~gd~~~~~~~~--~fvra~-fdy~p~~d~~IP~~e~-gl~fk~gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kG 94 (352)
+.+|||+.|+++|. .|+|+| +|++++..++-...++ ++.+ .+.-.+||+|+|||.+.+.. +|+|++|
T Consensus 76 ~~rIgdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~--~~~~~~~vr~~fdF~G~dee-------DLPFkkG 146 (293)
T KOG4792|consen 76 RLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVIL--RQEEAEYVRALFDFNGNDEE-------DLPFKKG 146 (293)
T ss_pred eeeeccccccchHHHHhheeEeeeccccccccccccccccCccc--chhhhhheeeeeccCCCccc-------cCCcccC
Confidence 78999999999887 799999 9999999876433332 3333 23334799999999998754 5999999
Q ss_pred ceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhh
Q psy12793 95 DILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTAC 134 (352)
Q Consensus 95 DIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~ 134 (352)
+||.|+++..+.||.|| |..|..|+||.+|++.++.++
T Consensus 147 eiL~I~~K~eeqWW~Ar--ns~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 147 EILRIRDKPEEQWWNAR--NSEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred cEEEEecCcHHHhhhhh--ccCCcccceechHHHhhhhhh
Confidence 99999999999999999 678999999999999988776
No 8
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.59 E-value=5e-15 Score=135.93 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=82.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHH
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 264 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~ 264 (352)
++.+++|||+|||||||+||.++|.+..+ .|.+++++
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~------------------------------------------ 46 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTA------------------------------------------ 46 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccc------------------------------------------
Confidence 56789999999999999999999987655 58788888
Q ss_pred HHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccC-----hhhH
Q psy12793 265 RTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILT-----HPSQ 339 (352)
Q Consensus 265 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 339 (352)
|||.+|++|.+|.+|+|+|.++|+.+++++.|+||++.... ..++
T Consensus 47 ------------------------------ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt~~~~i 96 (206)
T PRK14738 47 ------------------------------TTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPKAPV 96 (206)
T ss_pred ------------------------------cCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecCCHHHH
Confidence 99999999999999999999999999999999999987763 3678
Q ss_pred HHHHHcCcccc
Q psy12793 340 RHIVSCRKLVV 350 (352)
Q Consensus 340 ~~~~~~~~~~~ 350 (352)
+.++..|+.||
T Consensus 97 ~~~~~~g~~vi 107 (206)
T PRK14738 97 RQALASGRDVI 107 (206)
T ss_pred HHHHHcCCcEE
Confidence 88899998654
No 9
>KOG0708|consensus
Probab=99.51 E-value=1.1e-14 Score=143.60 Aligned_cols=184 Identities=27% Similarity=0.461 Sum_probs=137.0
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC---CCceeeecCChhHHHHhhhcccccccc
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKTKH 142 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~---~g~~GlIPS~~v~e~r~a~~~~~~~~~ 142 (352)
.+++++|||+...+. |....+++|..||++++++..+..||++|++.. ....|++|+....+++...+....
T Consensus 67 ~~v~~~~d~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~--- 141 (359)
T KOG0708|consen 67 LYVDALFDYDLDRGS--PGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRD--- 141 (359)
T ss_pred eEeeccccccccCCC--CCcchhhhhhhhhhhhccccccHHHHHhhccCCCcccccccccccccccccccccccccc---
Confidence 689999999998764 444468999999999999999999999998643 445799999766554433221100
Q ss_pred ccccccccccccccccc--cc--cccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccc
Q psy12793 143 EQVNCSIFGRKKKLYKD--KY--LAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAY 218 (352)
Q Consensus 143 ~~~~~~~~~rkkk~~k~--~~--~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~ 218 (352)
.+ .++++++..+. .. ....+.......+++||.|.++.....|||+|+||. +.-|.+.|++++|++|..
T Consensus 142 ---~f-~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~ 214 (359)
T KOG0708|consen 142 ---SF-NSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKS 214 (359)
T ss_pred ---cc-cccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccc
Confidence 00 01111111111 11 012223334456899999999999999999999998 677999999999999999
Q ss_pred cccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCC
Q psy12793 219 PVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRS 298 (352)
Q Consensus 219 ~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~ 298 (352)
++++ |+|+
T Consensus 215 C~~~------------------------------------------------------------------------t~~~ 222 (359)
T KOG0708|consen 215 CLPE------------------------------------------------------------------------TLRP 222 (359)
T ss_pred cchh------------------------------------------------------------------------hhcc
Confidence 9999 7776
Q ss_pred CCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeec-----cChhhHHHHHHcCc
Q psy12793 299 PRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSI-----LTHPSQRHIVSCRK 347 (352)
Q Consensus 299 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 347 (352)
. +++|+.+++++.|||||..- .+..+++.+...++
T Consensus 223 ~--------------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~ 262 (359)
T KOG0708|consen 223 S--------------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGK 262 (359)
T ss_pred c--------------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCC
Confidence 6 89999999999999999876 35678888888887
No 10
>KOG0707|consensus
Probab=99.50 E-value=3.5e-14 Score=132.93 Aligned_cols=96 Identities=26% Similarity=0.493 Sum_probs=81.7
Q ss_pred cCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHH
Q psy12793 184 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263 (352)
Q Consensus 184 p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~ 263 (352)
++...+++||+||+|+||.++..+|++++|..|++++++
T Consensus 33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~----------------------------------------- 71 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSH----------------------------------------- 71 (231)
T ss_pred CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecC-----------------------------------------
Confidence 455569999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccCh-----hh
Q psy12793 264 WRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTH-----PS 338 (352)
Q Consensus 264 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 338 (352)
|||.||..|+||.+|||++.++|..++.++.||||......+ ..
T Consensus 72 -------------------------------ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGtsi~a 120 (231)
T KOG0707|consen 72 -------------------------------TTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTSIAA 120 (231)
T ss_pred -------------------------------CCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCchHHH
Confidence 999999999999999999999999999999999954333221 45
Q ss_pred HHHHHHcCccccC
Q psy12793 339 QRHIVSCRKLVVN 351 (352)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (352)
++.+...++..++
T Consensus 121 v~~~~~~gk~~il 133 (231)
T KOG0707|consen 121 VQRLMLSGKVCIL 133 (231)
T ss_pred HHHHHhcCCccee
Confidence 5666666665553
No 11
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.50 E-value=1.2e-13 Score=119.36 Aligned_cols=89 Identities=28% Similarity=0.541 Sum_probs=79.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACS 269 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~ 269 (352)
+|+|+||+||||+|+.+.|++.++..|.+.+++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~----------------------------------------------- 33 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSH----------------------------------------------- 33 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccc-----------------------------------------------
Confidence 589999999999999999999988888888888
Q ss_pred hhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHH
Q psy12793 270 TIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVS 344 (352)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 344 (352)
|||+|+.+|.+|.+|+|++.++|.++++++.|+||++... ....+..++.
T Consensus 34 -------------------------tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~~~i~~~~~ 88 (137)
T cd00071 34 -------------------------TTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSKAAVEEALA 88 (137)
T ss_pred -------------------------cccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcHHHHHHHHh
Confidence 9999999999999999999999999999999999886654 3456788888
Q ss_pred cCcccc
Q psy12793 345 CRKLVV 350 (352)
Q Consensus 345 ~~~~~~ 350 (352)
.++++|
T Consensus 89 ~g~~~i 94 (137)
T cd00071 89 EGKIVI 94 (137)
T ss_pred CCCeEE
Confidence 888775
No 12
>KOG1029|consensus
Probab=99.45 E-value=6.5e-14 Score=147.15 Aligned_cols=156 Identities=21% Similarity=0.334 Sum_probs=100.6
Q ss_pred ccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH-HHhhh-ccccccccccccccccccccccccccccccC
Q psy12793 88 GIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE-WRTAC-STIDKTKHEQVNCSIFGRKKKLYKDKYLAKH 165 (352)
Q Consensus 88 ~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e-~r~a~-~~~~~~~~~~~~~~~~~rkkk~~k~~~~~k~ 165 (352)
+|.|..||.+.|+.++ ++||.++. .++.|++|++|... ..... .+..+ ...+.|+...-.+..+..
T Consensus 922 dlt~~egd~iLvtekd-geww~gt~---~~r~gifPan~y~r~~~q~gs~Tp~k--------~g~~~kkpeiAqVia~yv 989 (1118)
T KOG1029|consen 922 DLTFHEGDEILVTEKD-GEWWTGTC---GDREGIFPANYYVRPKDQEGSGTPPK--------QGPTPKKPEIAQVIADYV 989 (1118)
T ss_pred CccccccceEEEeecc-Cceecccc---CCccccccccceeeehhccCCCCCCC--------CCCCCCCchhhhhhhhhh
Confidence 7999999999999765 57998873 56899999996532 11111 01000 001111111111111122
Q ss_pred CccccccccccceeeEeccC---------------------CCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc-
Q psy12793 166 NAVFDQLDLVTYEEVVKLPS---------------------FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF- 223 (352)
Q Consensus 166 ~~~~~~~~i~sYEeV~~~p~---------------------~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~- 223 (352)
.+..++..+...+-|..... |+.--|-|++| |+||.|...+.++++..+|+|.++++
T Consensus 990 As~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~-~s~raTPa~~~v~qviamYdY~AqndD 1068 (1118)
T KOG1029|consen 990 ASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEP-GSGRATPATRPVCQVIAMYDYEAQNDD 1068 (1118)
T ss_pred ccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccC-CCCcCCCCCCccceeEEeeccccCCcc
Confidence 22233444444444432211 22233555566 48999999999999999999999988
Q ss_pred --ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793 224 --ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP 259 (352)
Q Consensus 224 --~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~ 259 (352)
+|.|||||+|+.|++++||++.+ +|.+|||||.
T Consensus 1069 ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSN 1103 (1118)
T KOG1029|consen 1069 ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSN 1103 (1118)
T ss_pred cccccCCCEEEecCCCChhhhcccc---cCccccCccc
Confidence 99999999999999999996655 4889999994
No 13
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.22 E-value=6.8e-11 Score=106.83 Aligned_cols=91 Identities=26% Similarity=0.501 Sum_probs=78.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 266 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~ 266 (352)
.+++|+|+|||||||+|+.+.|....| .|.+.+++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~-------------------------------------------- 38 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSA-------------------------------------------- 38 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCc--------------------------------------------
Confidence 568999999999999999999999887 46667777
Q ss_pred HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793 267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH 341 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 341 (352)
|||+|+.+|.+|.+|+|++.++|..++.++.|+++++... ....+..
T Consensus 39 ----------------------------~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~ 90 (205)
T PRK00300 39 ----------------------------TTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRSPVEE 90 (205)
T ss_pred ----------------------------cccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccCcHHHHHH
Confidence 9999999999999999999999999999999999886544 2455777
Q ss_pred HHHcCcccc
Q psy12793 342 IVSCRKLVV 350 (352)
Q Consensus 342 ~~~~~~~~~ 350 (352)
++..|+.||
T Consensus 91 ~l~~g~~vi 99 (205)
T PRK00300 91 ALAAGKDVL 99 (205)
T ss_pred HHHcCCeEE
Confidence 788887664
No 14
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.20 E-value=9.3e-11 Score=103.69 Aligned_cols=90 Identities=28% Similarity=0.524 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA 267 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~ 267 (352)
+++|+|+||+||||+|+.+.|+...+. +...+.+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~--------------------------------------------- 34 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISA--------------------------------------------- 34 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccc---------------------------------------------
Confidence 468999999999999999999998877 4455666
Q ss_pred HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHH
Q psy12793 268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHI 342 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 342 (352)
|||+|+.+|.+|.+|+|++.++|..++..++|++|++... .......+
T Consensus 35 ---------------------------~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~~ 87 (180)
T TIGR03263 35 ---------------------------TTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSPVEEA 87 (180)
T ss_pred ---------------------------eeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcHHHHHHH
Confidence 8999999999999999999999999999999999885433 13456777
Q ss_pred HHcCcccc
Q psy12793 343 VSCRKLVV 350 (352)
Q Consensus 343 ~~~~~~~~ 350 (352)
+..|+.||
T Consensus 88 ~~~g~~vi 95 (180)
T TIGR03263 88 LAAGKDVL 95 (180)
T ss_pred HHCCCeEE
Confidence 77777765
No 15
>KOG0609|consensus
Probab=99.09 E-value=6.3e-11 Score=121.56 Aligned_cols=93 Identities=30% Similarity=0.416 Sum_probs=72.0
Q ss_pred ccccceeEEEeecCCcchhhhhccC--CCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCC
Q psy12793 224 ITVCSVMFQIISKDDHNWWQARKDN--VAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRS 301 (352)
Q Consensus 224 ~~~~~~~~~vl~k~~~~w~~~~~~~--~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~ 301 (352)
+|.+|||++|++|+|++||||+++| ..+.+|||||++|||||.+|.....++..++. ||...+. .+....++
T Consensus 239 ~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~---~c~~l~k--kkk~~~~~- 312 (542)
T KOG0609|consen 239 PFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKT---RCQRLSK--KKKKKKSK- 312 (542)
T ss_pred cccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCc---hhcccch--hhhhhhhh-
Confidence 8999999999999999999999999 57999999999999999999999877665554 4433311 11212222
Q ss_pred CC----cCCcceEEecHHHHHHHHH
Q psy12793 302 DE----ENGRAYYFISHDEMMSDIA 322 (352)
Q Consensus 302 ~e----~~~~~~~~~~~~~~~~~~~ 322 (352)
|+ ..++.-.++|+||+..|-.
T Consensus 313 y~~~~~~~~d~~~~~tYEEV~~~~~ 337 (542)
T KOG0609|consen 313 YLGKHSAVFDQPELLTYEEVVRYPP 337 (542)
T ss_pred hhhhcchhhhccccccHHHHhhhcc
Confidence 44 4456667899999998876
No 16
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.03 E-value=2.3e-10 Score=82.96 Aligned_cols=49 Identities=33% Similarity=0.862 Sum_probs=42.3
Q ss_pred eccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
|+|||.|..++ +|+|++||+|.|+.+.+++||.++. .++.|+||++|++
T Consensus 1 Al~~y~~~~~d-------ELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPD-------ELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTT-------B-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred CCccCCCCCcC-------EeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECHHhCC
Confidence 68999999875 6999999999999998999999984 6899999999974
No 17
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.99 E-value=5.3e-10 Score=80.11 Aligned_cols=48 Identities=35% Similarity=0.945 Sum_probs=42.0
Q ss_pred eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecC
Q psy12793 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124 (352)
Q Consensus 69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS 124 (352)
+|+|||++..++ +|+|++||+|.|++..+.+||.++..+ +++.|+||+
T Consensus 1 ~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~-~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPD-------ELSFKKGDIIEVLEKSDDGWWKVRNES-TGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTT-------BSEB-TTEEEEEEEESSSSEEEEEETT-TTEEEEEEG
T ss_pred CCCeeeCCCCCC-------EEeEECCCEEEEEEecCCCEEEEEECC-CCcEEEeeC
Confidence 689999999865 699999999999999999999999754 478999996
No 18
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.90 E-value=1.4e-09 Score=80.11 Aligned_cols=53 Identities=36% Similarity=0.840 Sum_probs=44.2
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEe-eccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQII-SKDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl-~~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
+++|++||.+..++ +|+|++||+++|+ ++.+++||.++. +++.|+||++++++
T Consensus 1 ~~~a~~d~~~~~~~-------~Ls~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPD-------ELSFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTT-------B-EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCC-------ceEEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEEE
Confidence 47899999997654 6999999999999 888889999985 68899999998864
No 19
>KOG3580|consensus
Probab=98.89 E-value=1.6e-09 Score=112.35 Aligned_cols=196 Identities=18% Similarity=0.226 Sum_probs=121.7
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC----CCceEEEEcCC---CCceeeecCChhHHHHhhhcccc
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNV---AGSAGLIPSPELQEWRTACSTID 138 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D----~~WWqaR~~~~---~g~~GlIPS~~v~e~r~a~~~~~ 138 (352)
+|+|..|.|.+.... +|.|.+||||+|+++-. .+|...| .+. ....|+||.+..+|+-.+.....
T Consensus 505 FyIRtHFE~Eke~P~-------gL~FtrGeVFrvvDTLy~GklG~WLAvR-iG~dlrE~ErGiIPNksRAEQlASvq~aq 576 (1027)
T KOG3580|consen 505 FYIRTHFECEKETPQ-------GLAFTRGEVFRVVDTLYDGKLGNWLAVR-IGNDLRELERGIIPNKSRAEQLASVQNAQ 576 (1027)
T ss_pred eEEeeeeeecCCCCc-------cccccccceeeeeecccCCCCcceEEEe-ecccHHHHhcccCCCccHHHHHHHHHhhc
Confidence 688999999988753 79999999999999853 3555555 443 44589999999988766544322
Q ss_pred cc-cc--ccccccccc--cccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 139 KT-KH--EQVNCSIFG--RKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 139 ~~-~~--~~~~~~~~~--rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.. .. ......+++ +-.|+.-.+++...+...-+..+++||.|++......|||||+||-. +-.+.+|+++.|
T Consensus 577 r~~agGdRAdFWR~RGlRsg~KknlrkSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiA---DiAmeKLa~E~P 653 (1027)
T KOG3580|consen 577 RDNAGGDRADFWRMRGLRSGVKKNLRKSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIA---DIAMEKLANELP 653 (1027)
T ss_pred cccccchHHHHHHHhhhhhhhhhhhhhhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHH---HHHHHHHhhhCc
Confidence 11 11 011111111 10111222333444445556778999999999998999999999994 888899999999
Q ss_pred CCcccc--cccc-------ccccceeEEEe-ecCCcchhhhhc-----cCC---CCCccccCChhHHHHHHHHhhhc
Q psy12793 214 DKYAYP--VPQF-------ITVCSVMFQII-SKDDHNWWQARK-----DNV---AGSAGLIPSPELQEWRTACSTID 272 (352)
Q Consensus 214 ~~F~~~--v~~~-------~~~~~~~~~vl-~k~~~~w~~~~~-----~~~---~~~~g~~p~~~~~~~r~~~~~~~ 272 (352)
+.|..+ .+++ ...+++.|++| .++-|.-----+ -++ -+...+|-+.|.|-....+.+.+
T Consensus 654 D~fqiAkteprdag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~ 730 (1027)
T KOG3580|consen 654 DWFQIAKTEPRDAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLA 730 (1027)
T ss_pred chhhhhccccccCCcccccceEEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhC
Confidence 998776 4454 13355555444 333332111111 111 23445555666666665555555
No 20
>KOG4226|consensus
Probab=98.82 E-value=5.9e-09 Score=99.93 Aligned_cols=186 Identities=20% Similarity=0.387 Sum_probs=110.0
Q ss_pred eccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhccccccccccccccc
Q psy12793 70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSI 149 (352)
Q Consensus 70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~~~~~~~~ 149 (352)
--|+|.++..+ +|++.+|+.+.|+++..++||.+.. +|++|++||||+.|...... .... ++
T Consensus 112 VKf~Y~a~~eD-------ELsLtKGtrv~vmEKssDGWWrG~~---ng~VGWFPSNYv~E~~ds~~------gd~~--s~ 173 (379)
T KOG4226|consen 112 VKFNYVAERED-------ELSLTKGTRVTVMEKSSDGWWRGSY---NGQVGWFPSNYVTEEVDSAA------GDSP--SF 173 (379)
T ss_pred EEEeecccccc-------ccccccCcEEEEEEeccCcceeccc---CCeeccccccceehhccccc------cCCc--cc
Confidence 35889988655 6999999999999999999998763 78999999999976332211 0000 00
Q ss_pred cccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc---ccc
Q psy12793 150 FGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF---ITV 226 (352)
Q Consensus 150 ~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~---~~~ 226 (352)
...++ |..+...+. .+. +.-+-.+|.|...++ +|.
T Consensus 174 ~~~~~----------------------~A~a~n~~~--s~v------------------l~vVvaLYsFsssndeELsFe 211 (379)
T KOG4226|consen 174 LSLRK----------------------AASASNGQG--SRV------------------LHVVVALYSFSSSNDEELSFE 211 (379)
T ss_pred eecch----------------------hhcccCCCC--ceE------------------EEEEEEEecccCCChhhcccc
Confidence 00000 000000000 111 111123455666555 899
Q ss_pred cceeEEEeec--CCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCc
Q psy12793 227 CSVMFQIISK--DDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEE 304 (352)
Q Consensus 227 ~~~~~~vl~k--~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~ 304 (352)
||+...|+++ .|++||-+|.. .|-.||.|..-++..-.--.| .-...|.-+-.+.-.++--++..
T Consensus 212 KGerleivd~Pe~DPdWwkarn~--~G~vGLVPrNYv~vl~d~~~t-----------s~~~~~s~~pq~sgn~p~~sg~~ 278 (379)
T KOG4226|consen 212 KGERLEIVDKPENDPDWWKARNA--RGQVGLVPRNYVVVLSDGPST-----------SKALHPSHAPQISGNGPSSSGRF 278 (379)
T ss_pred cCceeEeccCCCCCchHHhhccc--CCccceeecceEEEeccCccc-----------cccCCccccccccCCCCCccccc
Confidence 9999999976 78999988653 677888887333222111111 11222222333333444445668
Q ss_pred CCcceEE--ecHHHHHHHH----HcCcEEE
Q psy12793 305 NGRAYYF--ISHDEMMSDI----AANQYLE 328 (352)
Q Consensus 305 ~~~~~~~--~~~~~~~~~~----~~~~~~~ 328 (352)
.|+.+|| ||++.-+-.+ ..+.||-
T Consensus 279 ag~~WYyG~itR~qae~~Ln~hG~eGdFLi 308 (379)
T KOG4226|consen 279 AGRPWYYGNITRHQAECALNEHGHEGDFLI 308 (379)
T ss_pred cCCcceeccccHHHHHHHHhccCccCceEE
Confidence 8999998 7888777666 3456653
No 21
>KOG2199|consensus
Probab=98.78 E-value=2e-09 Score=107.29 Aligned_cols=55 Identities=29% Similarity=0.676 Sum_probs=48.6
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 130 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~ 130 (352)
.-|||||||.+.+++ +|+|++||||.|++..|.+||.++. .+..|||||+||...
T Consensus 216 rkVRALYDFeAaE~n-------ELsFkaGdIItVLd~s~~~WWKG~~---~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 216 RKVRALYDFEAAEDN-------ELSFKAGDIITVLDDSDPNWWKGEN---HRGIGLFPSNFVTAD 270 (462)
T ss_pred hhhhhhhcccccCCC-------ccceecCcEEEEcccCCcchhcccc---CCcccccchhhhhhh
Confidence 458999999999876 6999999999999999999998873 567899999999643
No 22
>KOG4225|consensus
Probab=98.72 E-value=2.5e-08 Score=100.48 Aligned_cols=59 Identities=25% Similarity=0.553 Sum_probs=50.4
Q ss_pred eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793 64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 132 (352)
Q Consensus 64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~ 132 (352)
.....||+|+|.+++.. +|+|++|||+.|+.+.|.+|..+.+ +|+.|++|.+|++....
T Consensus 229 ~~~~aralf~F~~qt~k-------EL~~~kGDIVyI~rkvD~nWyeGEh---hGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 229 PKRAARALFDFEAQTPK-------ELPFNKGDIVYILRKVDQNWYEGEH---HGRVGIFPASYVEILTP 287 (489)
T ss_pred ccchhhheeccccCCcc-------ccccCCCCEEEEEeeccCceeeeee---cceecceechheeecCc
Confidence 33457999999999864 6999999999999999999987764 79999999999985443
No 23
>KOG4348|consensus
Probab=98.63 E-value=2.9e-08 Score=100.11 Aligned_cols=60 Identities=28% Similarity=0.687 Sum_probs=50.4
Q ss_pred cceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793 62 DILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 62 dilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r 131 (352)
+......++.|.|.|.+|+ +|.|+-||||.|+..-.++||.+.. +|..||+||||+.+..
T Consensus 97 q~~~r~c~v~f~Y~pqndD-------ELelkVGDiIeli~eVEeGWw~G~L---ngk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 97 QPQARICVVTFAYSPQNDD-------ELELKVGDIIELISEVEEGWWKGKL---NGKVGMFPSNFVKELP 156 (627)
T ss_pred CccceeEEEEEeecCCCCc-------eeeeeeccHHHhhhHhhhhhhhcee---cCcccccchhhceecC
Confidence 3333456788999999987 6999999999999999999998873 6899999999997644
No 24
>KOG4226|consensus
Probab=98.62 E-value=7.5e-08 Score=92.43 Aligned_cols=145 Identities=19% Similarity=0.424 Sum_probs=89.8
Q ss_pred eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhcccc--cccc
Q psy12793 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID--KTKH 142 (352)
Q Consensus 65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~--~~~~ 142 (352)
+++|.|-|||.++.+. +|.+++.+.|-+++. ...||..| |...+.|++||+|++....+....- +-+.
T Consensus 4 ~~~vvak~dy~aq~~q-------eldikkner~~lldd-sk~wwrvr--ns~n~tgyvpsnyverkn~~~~~si~knlkd 73 (379)
T KOG4226|consen 4 EVIVVAKWDYTAQQDQ-------ELDIKKNERLWLLDD-SKTWWRVR--NSANRTGYVPSNYVERKNSLKKGSIVKNLKD 73 (379)
T ss_pred EEEEEEEechhcccch-------hccccccceEEEEcC-Cccceeee--cccccCCcccchhhhcccchhhhHHHHhhhh
Confidence 4788999999998764 799999999999974 45899998 5677899999999975333221100 0000
Q ss_pred ccccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHh-hCCC--Ccccc
Q psy12793 143 EQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN-KFPD--KYAYP 219 (352)
Q Consensus 143 ~~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~-~~p~--~F~~~ 219 (352)
......+++ .+. .++...++- -..+|| +++.. ..|. +|.|.
T Consensus 74 ---~~g~kt~~k---~s~--------~~~~~sp~~--d~~~pp--------------------d~~~~~~t~AvVKf~Y~ 117 (379)
T KOG4226|consen 74 ---TLGLKTRRK---TSA--------RDASPSPST--DAEYPP--------------------DRIYDLNTPAVVKFNYV 117 (379)
T ss_pred ---ccccccccC---CCc--------cccCCCCCc--cccCCc--------------------chhhhcCCceEEEEeec
Confidence 000000111 000 011111110 011222 11111 1222 47788
Q ss_pred cccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793 220 VPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258 (352)
Q Consensus 220 v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~ 258 (352)
+.+. ++.||..|-|+.|....||.+ .++|..|.|||
T Consensus 118 a~~eDELsLtKGtrv~vmEKssDGWWrG---~~ng~VGWFPS 156 (379)
T KOG4226|consen 118 AEREDELSLTKGTRVTVMEKSSDGWWRG---SYNGQVGWFPS 156 (379)
T ss_pred cccccccccccCcEEEEEEeccCcceec---ccCCeeccccc
Confidence 7776 899999999999999999943 23899999999
No 25
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.62 E-value=6.8e-08 Score=68.21 Aligned_cols=52 Identities=38% Similarity=0.862 Sum_probs=44.7
Q ss_pred eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
++++++|.+..++ +|+|++||++.|+...+.+||.++..+ ++.|+||..+++
T Consensus 2 ~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPD-------ELSFKKGDIIEVLEKSDDGWWEGRLLG--GKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEECC--CCEEEEccccCc
Confidence 5789999998764 699999999999999888999999642 389999998874
No 26
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.59 E-value=7.6e-08 Score=68.65 Aligned_cols=53 Identities=38% Similarity=0.840 Sum_probs=45.5
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
+++|++||.+..++ +|+|++||++.|++..+.+||.++..+ ++.|+||.++++
T Consensus 4 ~~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v~ 56 (58)
T smart00326 4 QVRALYDYTAQDPD-------ELSFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSNYVE 56 (58)
T ss_pred EEEEeeeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchHHEE
Confidence 56899999997654 699999999999999889999998643 889999998864
No 27
>KOG1029|consensus
Probab=98.58 E-value=1.7e-08 Score=107.02 Aligned_cols=53 Identities=36% Similarity=0.847 Sum_probs=47.6
Q ss_pred eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 130 (352)
Q Consensus 68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~ 130 (352)
|.|+|||.+.+|+ +|+|.+||||-|++++|++||++.+ +|..||+|||||+..
T Consensus 1056 viamYdY~AqndD-------ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1056 VIAMYDYEAQNDD-------ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred eEEeeccccCCcc-------cccccCCCEEEecCCCChhhhcccc---cCccccCcccccccc
Confidence 4599999999987 6999999999999999999998874 689999999999753
No 28
>KOG3632|consensus
Probab=98.57 E-value=6.1e-08 Score=104.98 Aligned_cols=96 Identities=31% Similarity=0.517 Sum_probs=78.6
Q ss_pred cccceeeecccCCCCCCCCCccc-ccCcccccccceeeee----------------------------------------
Q psy12793 30 YLQIFVRAQFNYNPLDDDLIPCA-QAGIAFQIGDILQIFV---------------------------------------- 68 (352)
Q Consensus 30 ~~~~fvra~fdy~p~~d~~IP~~-e~gl~fk~gdilqi~v---------------------------------------- 68 (352)
+-.+|| |+|||||+.....|.+ +..|+|+.|+|+.|+.
T Consensus 1137 parifV-AlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rq 1215 (1335)
T KOG3632|consen 1137 PARIFV-ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQ 1215 (1335)
T ss_pred cceeeE-eeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHh
Confidence 344999 9999999998777765 6779999999986553
Q ss_pred --------------------------------eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC-
Q psy12793 69 --------------------------------RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV- 115 (352)
Q Consensus 69 --------------------------------RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~- 115 (352)
.|.|||+|.+.+..-..+++|.|..|||+.|....|++.+- .++
T Consensus 1216 G~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfy---yGel 1292 (1335)
T KOG3632|consen 1216 GLLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFY---YGEL 1292 (1335)
T ss_pred ccCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccc---cccc
Confidence 46799999987777777899999999999999987766542 233
Q ss_pred CCceeeecCChhHH
Q psy12793 116 AGSAGLIPSPELQE 129 (352)
Q Consensus 116 ~g~~GlIPS~~v~e 129 (352)
+++.|++|+++++.
T Consensus 1293 ngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1293 NGQKGLVPSNFLEA 1306 (1335)
T ss_pred CCccCccccccccC
Confidence 89999999999875
No 29
>KOG1118|consensus
Probab=98.54 E-value=3.2e-08 Score=96.11 Aligned_cols=56 Identities=25% Similarity=0.621 Sum_probs=49.7
Q ss_pred eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
-+.++||+|||+|++++ +|.|++||+|.|+++.|++||.+.. .|..|++|++|++.
T Consensus 305 ~~p~cralYdFepenEg-------EL~fkeGDlI~l~~QIdenWyeG~~---~g~sG~FPvnYv~v 360 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEG-------ELDFKEGDLITLTNQIDENWYEGEK---HGESGMFPVNYVEV 360 (366)
T ss_pred cchhheeeeccCCCCCC-------ccCcccCceeeehhhcCcchhhhee---cCccCccccceeEE
Confidence 35789999999999865 7999999999999999999999886 46799999999863
No 30
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.52 E-value=5.1e-07 Score=80.00 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=37.7
Q ss_pred cCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc----ChhhHHHHHHcCcccc
Q psy12793 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL----THPSQRHIVSCRKLVV 350 (352)
Q Consensus 295 t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 350 (352)
|+|++ +.+|.+|+|++.++|...+.+++|.++.+... +.......+..++.||
T Consensus 38 ~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~g~~vv 94 (179)
T TIGR02322 38 ITRPA---SAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPAEIDQWLEAGDVVV 94 (179)
T ss_pred cccCC---CCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChHHHHHHHhcCCEEE
Confidence 78864 46799999999999999999999999766521 2223444555555443
No 31
>KOG2070|consensus
Probab=98.39 E-value=2e-07 Score=95.29 Aligned_cols=57 Identities=28% Similarity=0.722 Sum_probs=50.7
Q ss_pred eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r 131 (352)
+.+|||-|+|.+.+.+ +|+|.+||||+|+..++++||.+.. +|+.|++||+|+.+..
T Consensus 17 pLvvrAkf~F~gsNnD-------ELsf~KgDvItVTq~eeGGWWEGTl---ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNND-------ELSFSKGDVITVTQVEEGGWWEGTL---NGRTGWFPSNYVREIK 73 (661)
T ss_pred ceEEEEEeecccCCCc-------eeccccCCEEEEEEeccCcceeccc---cCccCccchHHHHHHh
Confidence 3589999999998765 6999999999999999999998863 7899999999998755
No 32
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.38 E-value=1.3e-07 Score=92.75 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 266 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~ 266 (352)
+..+|+|+||+||||+++...|++.....+ ++.++...-.-+.|
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~i---is~Ds~Qvy~~l~i--------------------------------- 46 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEI---ISADSMQVYRGMDI--------------------------------- 46 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcE---Eeccccceeecccc---------------------------------
Confidence 346899999999999999999998765321 22211111111111
Q ss_pred HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcC
Q psy12793 267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCR 346 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (352)
+||+|+..|.+|..|||++..++...+..++|+|++ ...+..+.+.+
T Consensus 47 ----------------------------~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a-----~~~i~~i~~~g 93 (307)
T PRK00091 47 ----------------------------GTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA-----LAAIADILARG 93 (307)
T ss_pred ----------------------------cCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH-----HHHHHHHHhCC
Confidence 999999999999999999999999999999999977 44556777777
Q ss_pred cccc
Q psy12793 347 KLVV 350 (352)
Q Consensus 347 ~~~~ 350 (352)
+++|
T Consensus 94 k~pI 97 (307)
T PRK00091 94 KLPI 97 (307)
T ss_pred CCEE
Confidence 7754
No 33
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.32 E-value=9.7e-07 Score=79.41 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA 267 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~ 267 (352)
+.+++|+|||||||+|+.+.|.......|......
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~--------------------------------------------- 36 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY--------------------------------------------- 36 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE---------------------------------------------
Confidence 56899999999999999999977543223222222
Q ss_pred HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEE----EeeccChhhHHHHH
Q psy12793 268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY----GKSILTHPSQRHIV 343 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 343 (352)
++|.++ ..+.+|+|++.++|..+++++.|.|+ |....+.-+.+..+
T Consensus 37 ---------------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~~~~l 86 (186)
T PRK10078 37 ---------------------------ITRPAS---AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEIDLWL 86 (186)
T ss_pred ---------------------------CCCccc---hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHHHHHH
Confidence 666544 34778999999999999999999864 33333444577788
Q ss_pred HcCcccc
Q psy12793 344 SCRKLVV 350 (352)
Q Consensus 344 ~~~~~~~ 350 (352)
+.++.||
T Consensus 87 ~~g~~VI 93 (186)
T PRK10078 87 HAGFDVL 93 (186)
T ss_pred hCCCEEE
Confidence 8887654
No 34
>KOG4348|consensus
Probab=98.30 E-value=2.2e-07 Score=93.79 Aligned_cols=141 Identities=18% Similarity=0.391 Sum_probs=88.0
Q ss_pred eccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhccccccccccccccc
Q psy12793 70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSI 149 (352)
Q Consensus 70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~~~~~~~~ 149 (352)
.-|||++..|+ +|+.+.|+|+.=+.+.+++||.+.. +|+.|++|-+++.+-...++--. .-..
T Consensus 6 ve~dy~a~hdd-------elti~vgeii~nvkk~e~gw~egel---ngrrg~fpdnfV~eik~e~k~d~-------l~nk 68 (627)
T KOG4348|consen 6 VEYDYDAVHDD-------ELTIRVGEIIRNVKKLEEGWLEGEL---NGRRGQFPDNFVVEIKVEFKDDD-------LVNK 68 (627)
T ss_pred eecccccccCc-------eeeEeHHHHHHhhhhhccceeecee---ccccccCCchhhhhhhhhccccc-------cccc
Confidence 35899999987 6999999999999999999998873 79999999999976443321100 0000
Q ss_pred cccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc---ccc
Q psy12793 150 FGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF---ITV 226 (352)
Q Consensus 150 ~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~---~~~ 226 (352)
..++ ..+ . ....-.++.-|.|.+-. +.+--+ .+.+-..|.|.-+++ .|.
T Consensus 69 ~~r~-~l~-q--------~~s~n~l~~~q~v~rtn-----------~~~q~~-------~r~c~v~f~Y~pqndDELelk 120 (627)
T KOG4348|consen 69 LSRD-SLV-Q--------MTSRNPLTVHQQVERTN-----------PPPQPQ-------ARICVVTFAYSPQNDDELELK 120 (627)
T ss_pred cccc-chh-h--------cccCCCccccCcccccC-----------CCCCcc-------ceeEEEEEeecCCCCceeeee
Confidence 0000 000 0 00111122333333321 111000 011122377777766 788
Q ss_pred cceeEEEeecCCcchhhhhccCC-CCCccccCCh
Q psy12793 227 CSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSP 259 (352)
Q Consensus 227 ~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~ 259 (352)
-||||.|++.-...|| +|. +|..|||||.
T Consensus 121 VGDiIeli~eVEeGWw----~G~Lngk~GmFPsN 150 (627)
T KOG4348|consen 121 VGDIIELISEVEEGWW----KGKLNGKVGMFPSN 150 (627)
T ss_pred eccHHHhhhHhhhhhh----hceecCcccccchh
Confidence 9999999999999999 556 6888999993
No 35
>KOG3812|consensus
Probab=98.28 E-value=8.2e-07 Score=87.60 Aligned_cols=69 Identities=29% Similarity=0.484 Sum_probs=60.8
Q ss_pred ccceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 61 GDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 61 gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
-..+.+.|++..+|++.-|+..|.+..+++|...|.|||-.+-..+||-+|.+.+....||||++...+
T Consensus 54 ~KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp~rLe 122 (475)
T KOG3812|consen 54 RKPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPVRLE 122 (475)
T ss_pred cCCceEEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccchHHHH
Confidence 344557899999999999999999999999999999999999999999999887777899999986543
No 36
>PRK08356 hypothetical protein; Provisional
Probab=98.17 E-value=8.5e-07 Score=80.46 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=36.1
Q ss_pred cCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc
Q psy12793 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL 334 (352)
Q Consensus 295 t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (352)
++|-++..+.+|.+|+|++..++...+..+.|+|||+...
T Consensus 36 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~ 75 (195)
T PRK08356 36 SDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLK 75 (195)
T ss_pred CCcccccccccccccccccHHHHhhccccccHHHHHHHHH
Confidence 7888888999999999999999999999999999887654
No 37
>KOG0162|consensus
Probab=97.85 E-value=1.3e-05 Score=85.54 Aligned_cols=59 Identities=29% Similarity=0.628 Sum_probs=50.2
Q ss_pred ccceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 61 GDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 61 gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
+..+.-.+.|+|||.+++.+ +|+|++|||++|+..+-.+||+++ .+++.|++|-+|+.+
T Consensus 1047 ~~~k~p~~~A~Y~y~gq~~d-------Els~~~~diIei~~edpSGWw~gk---~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1047 KPPKNPVCEALYDYPGQDVD-------ELSFKKGDIIEIMREDPSGWWLGK---LNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CCCCCcceeeeccCCCCCcc-------cccccCCCEEEEeccCCCcchhhc---cCCcccccccccccc
Confidence 34444578999999999644 799999999999999999999998 368999999999864
No 38
>KOG2856|consensus
Probab=97.75 E-value=9.8e-06 Score=80.68 Aligned_cols=55 Identities=29% Similarity=0.616 Sum_probs=46.7
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC-ceEEEEcCCCCceeeecCChhHH
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~-WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
+-|+|||||.+.+.+ +|+|+.||.|..+..+|+. |-++|. ..|++||.|.+||+.
T Consensus 415 v~vraLYDY~gqE~D-------ElsfkaGd~l~kl~eeDeqGWC~Grl--~~G~vGLyPAnYVe~ 470 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGD-------ELSFKAGDELEKLEEEDEQGWCKGRL--DSGRVGLYPANYVEC 470 (472)
T ss_pred eeEEeeeccCccccc-------chhhccccHhhhcCCccccccccccc--cCCcccccchhhhhc
Confidence 678999999999866 6999999999999988764 557763 269999999999974
No 39
>KOG3875|consensus
Probab=97.75 E-value=6.2e-06 Score=80.54 Aligned_cols=89 Identities=25% Similarity=0.344 Sum_probs=62.1
Q ss_pred ceeeecccCCCCCCCCCccc----ccC-cccccccceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC---
Q psy12793 33 IFVRAQFNYNPLDDDLIPCA----QAG-IAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD--- 104 (352)
Q Consensus 33 ~fvra~fdy~p~~d~~IP~~----e~g-l~fk~gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D--- 104 (352)
.|.-+.|...+++-+++..- ++. ....++.--+++.||+|||.+++. .+|+|++||+|+|..++|
T Consensus 231 ~Fi~~i~G~PYLI~klls~~s~~~q~~q~n~a~~~dp~~~arA~YdF~a~np-------~ElSlk~Gdml~ia~K~dq~~ 303 (362)
T KOG3875|consen 231 AFILVIFGGPYLIIKLLSQYSKEAQESQRNWAKGIDPHEFARALYDFVARNP-------VELSLKKGDMLAIASKEDQQG 303 (362)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHhhCcCcCCChHHHHHHHhhhhcCCH-------HHhhhhcCchhhcccccccCC
Confidence 45545577777665554431 111 222223222368899999999874 379999999999999875
Q ss_pred --CCceEEEEcCCCCceeeecCChhHH
Q psy12793 105 --HNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 105 --~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
.+||+.+.. +.+..|+||.+|+.-
T Consensus 304 ~~~~gW~lat~-dg~~tG~iP~NYvkI 329 (362)
T KOG3875|consen 304 VRCEGWLLATR-DGGTTGLIPINYVKI 329 (362)
T ss_pred CCCcceeeeec-cCCeeeeeehhhhhh
Confidence 469998875 367899999999863
No 40
>KOG0515|consensus
Probab=97.61 E-value=2.5e-05 Score=81.02 Aligned_cols=52 Identities=37% Similarity=0.748 Sum_probs=44.5
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC---CCceEEEEcCCCCceeeecCChhH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD---HNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D---~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
++=|||||.+..++ +|+|..||-|.|+.++| .+||.|+ .+++.|+||.+|+.
T Consensus 685 ~vYAlwdYeaqf~D-------ELsf~eGd~lTvirr~d~~eteWWwa~---lng~eGyVPRnylg 739 (752)
T KOG0515|consen 685 VVYALWDYEAQFED-------ELSFDEGDELTVIRRDDEVETEWWWAR---LNGEEGYVPRNYLG 739 (752)
T ss_pred eeEEeecccccccc-------cccccCCceeEEEecCCcchhhhhhHh---hcCcccccchhhhh
Confidence 45699999998876 69999999999998865 4799998 36889999999975
No 41
>KOG3601|consensus
Probab=97.52 E-value=5e-05 Score=70.79 Aligned_cols=48 Identities=31% Similarity=0.603 Sum_probs=37.2
Q ss_pred eccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChh
Q psy12793 70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPEL 127 (352)
Q Consensus 70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v 127 (352)
+++|+....++ +|+|.+||+|.+++..| -+|..+.. .+..|+||+|+.
T Consensus 5 a~n~f~a~i~d-------ELsFlkg~~lk~l~~~d~~nw~~ael---~g~~g~~P~Nai 53 (222)
T KOG3601|consen 5 AKNDFLAGIRD-------ELSFLKGDNLKILNMEDDINWYKAEL---DGPEGFIPKNAI 53 (222)
T ss_pred hhhhhhhcCcc-------cceeecCCceEecchHHhhhhhhHhh---cCccccCccccc
Confidence 45666655544 69999999999999865 47776653 678999999987
No 42
>KOG2996|consensus
Probab=97.48 E-value=6.1e-05 Score=78.82 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=40.9
Q ss_pred eeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHHH
Q psy12793 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQEW 130 (352)
Q Consensus 69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e~ 130 (352)
.|.||+.+++- .+|+|++|||+.|.++. |.+||.+.. +|++|++|++|+++.
T Consensus 809 varYdf~ard~-------~eLSlk~GDvV~i~~k~g~d~GWWkGev---ngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 809 VARYDFCARDM-------RELSLKEGDVVKIYDKVGEDQGWWKGEV---NGRVGWFPSTYVEED 862 (865)
T ss_pred eeccccCCCch-------hhcccccCCEEEEehhccccCceeccee---cCccccccccccccc
Confidence 34555555543 26999999999999974 679998763 789999999999863
No 43
>KOG3655|consensus
Probab=97.47 E-value=4.6e-05 Score=77.98 Aligned_cols=52 Identities=31% Similarity=0.717 Sum_probs=46.8
Q ss_pred eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
.+|+|||++.+|. +++|..+|++.+|+..|++||+++ +..|..||+|.||+.
T Consensus 430 A~A~~dyqAAddt-------Eisf~p~d~it~Id~vdegww~g~--~pdG~~glfPaNyV~ 481 (484)
T KOG3655|consen 430 ARALYDYQAADDT-------EISFDPPDAITLIDQVDEGWWTGQ--GPDGEVGLFPANYVE 481 (484)
T ss_pred ccccccccccCCc-------ccccCCccccccccccCCcccccc--CCCCCcCcccccccc
Confidence 4789999999875 699999999999999999999987 467899999999985
No 44
>KOG3601|consensus
Probab=97.43 E-value=7e-05 Score=69.86 Aligned_cols=54 Identities=24% Similarity=0.621 Sum_probs=47.8
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
.|.+|+||+++..++ +|.|++||+++|++..+..||.++. .|++|++|..|+..
T Consensus 164 ~yqQa~~df~~~pp~-------ql~f~~gq~~~v~~~ss~~ww~Gs~---lg~agiFpagyv~p 217 (222)
T KOG3601|consen 164 YYQQALYDFQPQPPG-------QLAFRRGQQIQVLDSSSPFWWFGSK---LGRAGIFPAGYVAP 217 (222)
T ss_pred hhhhhcCCCCCCCch-------hhccccCCcceeecCCCcchhhccc---cCceeeecCccccc
Confidence 588999999988765 6999999999999999999998884 57899999998753
No 45
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.41 E-value=0.00023 Score=69.54 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=34.1
Q ss_pred cCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcCcccc
Q psy12793 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVV 350 (352)
Q Consensus 295 t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
+|++|+..|.+|..|||++.-+.......++|.+ ........+.+.|+++|
T Consensus 42 gTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~-----~a~~~i~~~~~~g~~pi 92 (287)
T TIGR00174 42 GTAKPSLQEREGIPHHLIDILDPSESYSAADFQT-----LALNAIADITARGKIPL 92 (287)
T ss_pred cCCCCCHHHHcCccEEEEEEechhheEcHHHHHH-----HHHHHHHHHHhCCCCEE
Confidence 8999999999999999999544443332233221 13345567778887654
No 46
>KOG3632|consensus
Probab=97.39 E-value=0.00012 Score=80.28 Aligned_cols=63 Identities=27% Similarity=0.494 Sum_probs=48.2
Q ss_pred eeeeeccccCCCCCCCCcCcC-cccccccCceEEEeeccCCCce-EEEEcCCCCceeeecCChhHHHH
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQ-AGIAFQIGDILQIISKDDHNWW-QARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e-~~LsF~kGDIL~Vl~~~D~~WW-qaR~~~~~g~~GlIPS~~v~e~r 131 (352)
.++.|||||||..-+.+|.-+ .+|+|++|+||.|+...|.+-+ ++. .+++.|+||+|.+++..
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE---~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGE---LNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecc---ccccccccccccccccc
Confidence 456799999997765555433 5899999999999987765543 332 27899999999998743
No 47
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=97.31 E-value=8.2e-05 Score=53.09 Aligned_cols=43 Identities=23% Similarity=0.625 Sum_probs=34.4
Q ss_pred Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793 215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258 (352)
Q Consensus 215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~ 258 (352)
+|.|.+... +|.+|++|.||.+.+.+||.++.... +..|+||+
T Consensus 3 lydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~ 48 (48)
T PF00018_consen 3 LYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNEST-GKEGWVPS 48 (48)
T ss_dssp SSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred CeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence 466665544 89999999999999999998887655 78899985
No 48
>KOG0197|consensus
Probab=97.17 E-value=9.3e-05 Score=76.39 Aligned_cols=58 Identities=29% Similarity=0.648 Sum_probs=49.9
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCce-EEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDI-LQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDI-L~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r 131 (352)
..+.|+|||.+..+. +|+|.+||+ +++++..+..||.||... .+..|+||+||+.+.+
T Consensus 12 ~~~valyd~~s~~~~-------dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~-~~~~g~ip~N~v~~~~ 70 (468)
T KOG0197|consen 12 TIVVALYDYASRTPE-------DLSFRKGDVVLILLETTNGDWWRARSLQ-LGQEGYIPSNYVARNR 70 (468)
T ss_pred ceEEEeccccCCCcc-------ccccccCceEEEeeccCChhHHHHHHhh-cCCCCcCcCceeeccc
Confidence 357899999998854 699999999 999999999999998643 6889999999998753
No 49
>KOG1264|consensus
Probab=97.14 E-value=0.00023 Score=77.04 Aligned_cols=59 Identities=27% Similarity=0.561 Sum_probs=50.4
Q ss_pred eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 132 (352)
Q Consensus 65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~ 132 (352)
++-++|||||.+..++ +|+|-+|-||+.+.++...||.++.. ..-.+++||+|+++-..
T Consensus 774 ~vt~kAL~~Yka~r~D-------ELSFpk~aiItnv~keeg~wWrGdYG--g~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSD-------ELSFPKGAIITNVSKEEGGWWRGDYG--GRIQQWFPSNYVEEIST 832 (1267)
T ss_pred chhhhhhhccccCCcc-------cccccccceeEeeeccCCceeecccc--cceeeeccHHHhhhhcc
Confidence 5789999999998876 69999999999999999999988742 23579999999997554
No 50
>KOG4225|consensus
Probab=97.07 E-value=0.00037 Score=70.98 Aligned_cols=54 Identities=26% Similarity=0.601 Sum_probs=46.1
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
-++|||.|.|++++ +|.|+.|||+.|+.+=|++|+-+... ..|..|.+|-|||+
T Consensus 434 ~yrAly~Y~pqned-------eLEl~egDii~VmeKcddgWfvGts~-rtg~fGtFPgnyV~ 487 (489)
T KOG4225|consen 434 KYRALYSYRPQNED-------ELELREGDIIDVMEKCDDGWFVGTSR-RTGKFGTFPGNYVK 487 (489)
T ss_pred cceeccccCCCCch-------hheeccCCEEeeeecccCcceeccce-ecccccccCccccc
Confidence 37999999999876 69999999999999999999876211 26889999999986
No 51
>KOG2546|consensus
Probab=97.06 E-value=0.00045 Score=70.16 Aligned_cols=53 Identities=30% Similarity=0.642 Sum_probs=46.6
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
-|.++|||.+..|+ +|+|..|-||.|+.+.|++||.+-. ++-.||||-||++.
T Consensus 425 kVv~iydy~~~Kdd-------eLsf~E~ailyv~kknddgw~EgV~---~~VTglFpgnyve~ 477 (483)
T KOG2546|consen 425 KVVAIYDYTADKDD-------ELSFAEGAILYVLKKNDDGWYEGVQ---DGVTGLFPGNYVEP 477 (483)
T ss_pred HHHhhccccccccc-------ccccccccEEEEEEecCCcchhhee---cCcceeccCccccc
Confidence 46799999999877 6999999999999999999997763 56799999999875
No 52
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=96.77 E-value=0.00049 Score=49.72 Aligned_cols=40 Identities=28% Similarity=0.661 Sum_probs=32.4
Q ss_pred cccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793 216 YAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258 (352)
Q Consensus 216 F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~ 258 (352)
|.|.+... +|.+|++|.|+.+.+.+||.++. .|..|+||+
T Consensus 3 ~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~ 45 (49)
T PF14604_consen 3 YDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPA 45 (49)
T ss_dssp SCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEG
T ss_pred ccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECH
Confidence 45554443 89999999999999999999875 678899997
No 53
>KOG1843|consensus
Probab=96.73 E-value=0.00071 Score=68.49 Aligned_cols=58 Identities=29% Similarity=0.666 Sum_probs=47.4
Q ss_pred ccceee-eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC--CCceEEEEcCCCCceeeecCChhH
Q psy12793 61 GDILQI-FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 61 gdilqi-~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D--~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
|.-++. .+.|+|++..+..+ +|+|++||||.|+++.| ..||.++. ++..|++|-||+.
T Consensus 411 ~~Sl~~n~a~a~ysfage~~G-------Dl~f~kgDii~il~ks~s~~dwwtgr~---~~~egifPanyv~ 471 (473)
T KOG1843|consen 411 GCSLEPNIATALYSFAGEQPG-------DLSFQKGDIITILKKSDSANDWWTGRG---NGYEGIFPANYVS 471 (473)
T ss_pred ccccCcceeeeeehhccCCCC-------CcccccCceEEEecCCcchhhHHHhhc---cccccccccceec
Confidence 333443 57899999998765 69999999999999875 57999984 6889999999974
No 54
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=96.72 E-value=0.00029 Score=51.60 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=30.1
Q ss_pred ccccceeEEEe-ecCCcchhhhhccCCCCCccccCChhHH
Q psy12793 224 ITVCSVMFQII-SKDDHNWWQARKDNVAGSAGLIPSPELQ 262 (352)
Q Consensus 224 ~~~~~~~~~vl-~k~~~~w~~~~~~~~~~~~g~~p~~~~~ 262 (352)
+|.+|++|.|+ .+++.+||.++. .|..|+||+.-++
T Consensus 17 s~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~ 53 (55)
T PF07653_consen 17 SFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVE 53 (55)
T ss_dssp EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred EEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEE
Confidence 89999999999 999999998877 5667999986543
No 55
>KOG2199|consensus
Probab=96.72 E-value=0.00074 Score=68.18 Aligned_cols=48 Identities=21% Similarity=0.475 Sum_probs=38.7
Q ss_pred hCCCCcccccccc---ccccceeEEEeecCCcchhhhhccCC-CCCccccCChhHHH
Q psy12793 211 KFPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSPELQE 263 (352)
Q Consensus 211 ~~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~~~~~ 263 (352)
++..+|+|.+.-+ +|-+|+||.||+..|++|| +|+ .++-||||+ .|.+
T Consensus 217 kVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WW----KG~~~~~~GlFPs-nfVT 268 (462)
T KOG2199|consen 217 KVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWW----KGENHRGIGLFPS-NFVT 268 (462)
T ss_pred hhhhhhcccccCCCccceecCcEEEEcccCCcchh----ccccCCcccccch-hhhh
Confidence 3445677776544 9999999999999999999 778 788999999 4443
No 56
>KOG2996|consensus
Probab=96.66 E-value=0.0022 Score=67.61 Aligned_cols=40 Identities=28% Similarity=0.775 Sum_probs=32.5
Q ss_pred ccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhH
Q psy12793 88 GIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 88 ~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
-|.|+.|||+..+..+ ...||++|..+ .+..|.+||..+.
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~-sr~sg~fpss~vk 666 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHG-SRESGNFPSSTVK 666 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCcc-CCccCCCCccccC
Confidence 3899999999999876 46899999654 5678999997664
No 57
>PLN02840 tRNA dimethylallyltransferase
Probab=96.50 E-value=0.0014 Score=67.27 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT 266 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~ 266 (352)
...+|+|+||+||||+++...|++.....+ ++.+++..-.-+.|
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~i---is~Ds~qvYr~~~I--------------------------------- 63 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEI---ISADSVQVYRGLDV--------------------------------- 63 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCe---EeccccceecceeE---------------------------------
Confidence 345799999999999999999998865322 22211111111112
Q ss_pred HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcC
Q psy12793 267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCR 346 (352)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (352)
+|++|...|.+|..||||+.-+.......++|.+- ......+|.+.|
T Consensus 64 ----------------------------gTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~-----A~~~I~~i~~rg 110 (421)
T PLN02840 64 ----------------------------GSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDD-----ARRATQDILNRG 110 (421)
T ss_pred ----------------------------EcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHH-----HHHHHHHHHhcC
Confidence 79999999999999999876655444344444321 234556777777
Q ss_pred cccc
Q psy12793 347 KLVV 350 (352)
Q Consensus 347 ~~~~ 350 (352)
+++|
T Consensus 111 kiPI 114 (421)
T PLN02840 111 RVPI 114 (421)
T ss_pred CCEE
Confidence 7654
No 58
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0072 Score=55.15 Aligned_cols=30 Identities=13% Similarity=0.468 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDK 215 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~ 215 (352)
+++++|+|.||||+||+||...+....+..
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~ 32 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGR 32 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccC
Confidence 368999999999999999999888776654
No 59
>KOG4792|consensus
Probab=96.01 E-value=0.0047 Score=58.63 Aligned_cols=57 Identities=23% Similarity=0.541 Sum_probs=48.0
Q ss_pred CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhh
Q psy12793 213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 271 (352)
Q Consensus 213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~ 271 (352)
..+|.|.-.+. +|.+|+++.|++|.+..||.||-. .|..||||-+-.|.+|++|...
T Consensus 128 r~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns--~Gk~GmIPvpYVe~~~~~~~~~ 187 (293)
T KOG4792|consen 128 RALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS--EGKRGMIPVPYVEKYRPASASV 187 (293)
T ss_pred eeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc--CCcccceechHHHhhhhhhccc
Confidence 34677775543 999999999999999999999753 6788999999999999999443
No 60
>KOG4575|consensus
Probab=95.98 E-value=0.006 Score=64.82 Aligned_cols=54 Identities=26% Similarity=0.545 Sum_probs=46.3
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChh
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v 127 (352)
..|+|+|-|.++..+ +|.|..||+++++.-.|.-||-.+..| ....|++|||++
T Consensus 9 ~~vrA~y~w~ge~eG-------dl~f~egDlie~trI~dgkwwi~lhrN-k~~~g~fpsNFv 62 (874)
T KOG4575|consen 9 CMVRALYAWPGEREG-------DLKFTEGDLIEQTRIEDGKWWILLHRN-KDEDGLFPSNFV 62 (874)
T ss_pred ceEEeeccCCCCccc-------ccceecccceeEEeeccceeeeeeeec-ccccccCcccce
Confidence 578999999888754 699999999999999998888777655 456799999998
No 61
>KOG3557|consensus
Probab=95.87 E-value=0.0021 Score=68.24 Aligned_cols=56 Identities=21% Similarity=0.631 Sum_probs=46.7
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r 131 (352)
.++..+||+.++... +|+..+||+|+|++. ..+||.++ +..|++|+||++.+...+
T Consensus 501 k~~~~~Ydf~arNs~-------ELsV~k~E~LEvl~d-~R~WW~~k--n~~G~~GyvP~nIL~~~~ 556 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSS-------ELSVKKGEVLEVLDD-GRKWWKVK--NGHGRAGYVPSNILAPLQ 556 (721)
T ss_pred eeeeeehhhhcccch-------hhhhhhhhhhhhhhc-cccceecc--CccCCCCCcchhhhccCC
Confidence 467789999998764 699999999999974 45899998 568999999999887543
No 62
>KOG1702|consensus
Probab=95.65 E-value=0.014 Score=54.64 Aligned_cols=54 Identities=24% Similarity=0.492 Sum_probs=43.5
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
-.||.|||.+.+.+ +++|+-||-|.-+...|++|.-+.. ..+|..|++|.||++
T Consensus 209 tyra~ydysaqded-------evsF~dgd~ivnvq~iddGWmygtv-~rtg~tGmlpaNyie 262 (264)
T KOG1702|consen 209 TYRAFYDYSAQDED-------EVSFVDGDYIVNVQSIDDGWMYGTV-VRTGWTGMLPANYIE 262 (264)
T ss_pred cchhhccCcccCcc-------eeEEecCCeEEEEEeccCCceeeEE-EeccccCCCchhhee
Confidence 35899999998765 6999999999888888888854332 237899999999975
No 63
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.0098 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+|+|||||||+|+.++|.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999987
No 64
>PRK00098 GTPase RsgA; Reviewed
Probab=95.29 E-value=0.02 Score=55.73 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.++.++|+|+|||||+||.+.|+....
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC
Confidence 467899999999999999999986543
No 65
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.27 E-value=0.02 Score=50.83 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKY 216 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F 216 (352)
+++|+|.|++||||+|+.+.|....+..|
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 57899999999999999999998866533
No 66
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.15 E-value=0.02 Score=47.00 Aligned_cols=23 Identities=17% Similarity=0.562 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|.|++||||+|+.+.|++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999864
No 67
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=94.69 E-value=0.017 Score=40.59 Aligned_cols=34 Identities=29% Similarity=0.671 Sum_probs=30.0
Q ss_pred ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793 224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP 259 (352)
Q Consensus 224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~ 259 (352)
+|.+|+.|.|+.+.+..||.++... +..|+||+.
T Consensus 20 ~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~ 53 (58)
T smart00326 20 SFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSN 53 (58)
T ss_pred CCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchH
Confidence 7889999999999999999887765 778999974
No 68
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.36 E-value=0.044 Score=46.08 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+|+|+||+||||+|+.+.|.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987655
No 69
>KOG3771|consensus
Probab=94.12 E-value=0.032 Score=57.61 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=35.6
Q ss_pred eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCC
Q psy12793 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNV 115 (352)
Q Consensus 66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~ 115 (352)
..|++++||.+.+.+ +|+|+.||+|.|+..+ ..+||.+++.+.
T Consensus 401 ~~v~a~~dy~a~~~d-------eLsf~~gd~i~vi~s~~~~e~~eg~~mg~ 444 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTD-------ELSFEAGDVILVIPSDNPEEQDEGWLMGV 444 (460)
T ss_pred cceeccccccccccc-------cccccCCCEEEEecCCCccchhhHHHhhh
Confidence 358999999998765 6999999999999875 467999987543
No 70
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=94.05 E-value=0.023 Score=39.53 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=29.7
Q ss_pred ccccceeEEEeecCCcchhhhhccCCCCCccccCChh
Q psy12793 224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPE 260 (352)
Q Consensus 224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~ 260 (352)
+|.+|+.|.|+...+.+||.++..+. ..|+||+.-
T Consensus 17 ~~~~Gd~v~v~~~~~~~w~~~~~~~~--~~G~vP~~~ 51 (54)
T cd00174 17 SFKKGDIIEVLEKSDDGWWEGRLLGG--KRGLFPSNY 51 (54)
T ss_pred CCCCCCEEEEEEcCCCCeEEEEECCC--CEEEEcccc
Confidence 78899999999999999998887554 778999843
No 71
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.91 E-value=0.053 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|.|++||||+|+.+.|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 72
>PRK06762 hypothetical protein; Provisional
Probab=93.85 E-value=0.062 Score=46.85 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+.++|+|.|++||||+|+.+.|.+..+
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988764
No 73
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.76 E-value=0.066 Score=48.28 Aligned_cols=25 Identities=48% Similarity=0.727 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+.+||+|+|||||+||.+.|+..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3489999999999999999999875
No 74
>KOG4278|consensus
Probab=93.74 E-value=0.056 Score=58.31 Aligned_cols=54 Identities=20% Similarity=0.488 Sum_probs=44.0
Q ss_pred eeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e~r 131 (352)
..|||||-+..|. .|++.+||.|+|+.-. ..+|-.||- .+|+ |++||||....-
T Consensus 93 FVALYDFvasGdn-------tLSitKGeklRvLGYN~NgEWcEart--KNGq-GWVPSNyItPvN 147 (1157)
T KOG4278|consen 93 FVALYDFVASGDN-------TLSITKGEKLRVLGYNKNGEWCEART--KNGQ-GWVPSNYITPVN 147 (1157)
T ss_pred eEeeeeeeccccc-------eeeeecCceEEEeeecCCCcceeecc--cCCC-cccccccccccc
Confidence 4699999988775 5999999999999875 567888883 4566 999999987543
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.36 E-value=0.1 Score=41.59 Aligned_cols=28 Identities=14% Similarity=0.438 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDK 215 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~ 215 (352)
++.++|.||+|+||+++...++......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4678999999999999999998876543
No 76
>PRK08233 hypothetical protein; Provisional
Probab=93.25 E-value=0.095 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...|.|.|++||||+|+..+|+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35778889999999999999998765
No 77
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.23 E-value=0.087 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...|+|+||+||||+|+.++|....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998753
No 78
>KOG1118|consensus
Probab=93.22 E-value=0.043 Score=54.24 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793 214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258 (352)
Q Consensus 214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~ 258 (352)
.+|.|-..+. -|-.|++|.|+.+.|.+||.++++|+ +||||.
T Consensus 311 alYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~---sG~FPv 355 (366)
T KOG1118|consen 311 ALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGE---SGMFPV 355 (366)
T ss_pred eeeccCCCCCCccCcccCceeeehhhcCcchhhheecCc---cCcccc
Confidence 4677777766 79999999999999999997777766 999997
No 79
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.09 E-value=0.096 Score=47.79 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+..+..|.|+|||||||+|+.+.|....+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567889999999999999999987654
No 80
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.00 E-value=0.098 Score=50.00 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+++|+|+|++||||+|+.++|.+.++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC
Confidence 47889999999999999999998875
No 81
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.97 E-value=0.13 Score=44.47 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.++.|+|+|++||||+|+...|.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988753
No 82
>KOG2222|consensus
Probab=92.79 E-value=0.059 Score=56.10 Aligned_cols=55 Identities=27% Similarity=0.533 Sum_probs=44.7
Q ss_pred eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhh
Q psy12793 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA 133 (352)
Q Consensus 69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a 133 (352)
+||.||.-.+|+ +|.|++.||+.|++..|+..|-+. .+|-.|++|.++++-..+.
T Consensus 552 kal~df~r~ddd-------elgfrkndiitiisekdehcwvge---lnglrgwfpakfvellder 606 (848)
T KOG2222|consen 552 KALHDFAREDDD-------ELGFRKNDIITIISEKDEHCWVGE---LNGLRGWFPAKFVELLDER 606 (848)
T ss_pred HHHhhhhhcccc-------ccccccccEEEEeecCCcceeeec---cccccccchHHHHHHHHhc
Confidence 567777666654 699999999999999999999765 3788999999998855444
No 83
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.77 E-value=0.13 Score=48.41 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=29.0
Q ss_pred cccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 174 LVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 174 i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
.-+|.+...++++....++|+||||+||+++.+.+.-
T Consensus 11 f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 11 FKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred ccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456666555566678899999999999999998854
No 84
>PRK08118 topology modulation protein; Reviewed
Probab=92.74 E-value=0.11 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+-|+|+||+||||+|+.++|.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999999999876
No 85
>PRK14527 adenylate kinase; Provisional
Probab=92.35 E-value=0.16 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+..|+|+||+||||+|+...|.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 86
>PRK14531 adenylate kinase; Provisional
Probab=92.33 E-value=0.14 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
++-|+|+||+||||+|+..+|.+.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998864
No 87
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.11 E-value=0.15 Score=41.32 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhCC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
|+|+|++||||+++.++|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67899999999999999998643
No 88
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.05 E-value=0.13 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.|+|+||+||||+|+..+|++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 378899999999999999988653
No 89
>PRK03839 putative kinase; Provisional
Probab=91.99 E-value=0.16 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|+|++||||+|+.++|.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998874
No 90
>PRK14530 adenylate kinase; Provisional
Probab=91.99 E-value=0.17 Score=46.44 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
++.|+|+||+||||+|+.++|++...
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999987653
No 91
>PRK06217 hypothetical protein; Validated
Probab=91.88 E-value=0.17 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..|+|+|++||||+|+.++|.+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999864
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.86 E-value=0.17 Score=41.36 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|.||+|+||+++.+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6789999999999999999874
No 93
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.82 E-value=0.2 Score=40.51 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+.++|.||+|+||+++.+.+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998864
No 94
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.72 E-value=0.14 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHhhCC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
|+|+||+||||+|+...|.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999988754
No 95
>PRK06761 hypothetical protein; Provisional
Probab=91.66 E-value=0.33 Score=47.52 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
.++|+|.|++||||+|+.+.|.+....
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 468999999999999999999987543
No 96
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.66 E-value=0.18 Score=38.40 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|.|++|+||+|+.+.|....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999999998875
No 97
>PLN02200 adenylate kinase family protein
Probab=91.65 E-value=0.2 Score=47.36 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=26.8
Q ss_pred cccceeeEeccC-CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 174 LVTYEEVVKLPS-FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 174 i~sYEeV~~~p~-~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+.+.|++-.-+. .....|+|+||+||||+|+..+|++..
T Consensus 28 ~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 28 IITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred ccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 444444432222 223578889999999999999998764
No 98
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.47 E-value=0.23 Score=43.84 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..|+|.|++||||+|+.+.|.....
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999887643
No 99
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.45 E-value=0.22 Score=38.08 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...+|+|++||||+||.+.+.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
No 100
>PRK07261 topology modulation protein; Provisional
Probab=91.43 E-value=0.17 Score=45.18 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+|+|++||||+|+.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3788999999999999998765
No 101
>PRK14532 adenylate kinase; Provisional
Probab=91.35 E-value=0.18 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.|+|+||+||||+|+..+|++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999988654
No 102
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.34 E-value=0.17 Score=43.24 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+|+|.|++||||+|+.+.|...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4788999999999999999876
No 103
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.28 E-value=0.21 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+++|||.|+.||||+|+.++|.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998753
No 104
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.21 E-value=0.21 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+|+|.|+.||||+|+.++|.+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998764
No 105
>PF05729 NACHT: NACHT domain
Probab=91.20 E-value=0.22 Score=42.22 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+++|.|+.|+||+++..+++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999988764
No 106
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.18 E-value=0.19 Score=47.85 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=21.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...+..++|+|||||||+|+.+-+-.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35688999999999999998876643
No 107
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=91.04 E-value=0.062 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.++|+|+||+||||+.|.-.|++.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 358999999999999999999887
No 108
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.03 E-value=0.23 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
...+..++|+||||+||+|+.+.+.
T Consensus 20 ~~~~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 20 PFSPKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred cCCCCcEEEECCCCCCHHHHHHHHH
Confidence 3345688999999999999999886
No 109
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=90.78 E-value=0.24 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDK 215 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~ 215 (352)
+++|+|-|+|.|||+||.+.|....+..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p 28 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEP 28 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCC
Confidence 4789999999999999999999987775
No 110
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.76 E-value=0.32 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+.|+|+|++|+||+|+...|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4679999999999999999998764
No 111
>PRK13947 shikimate kinase; Provisional
Probab=90.75 E-value=0.29 Score=42.71 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..|+|+|++||||+|+..+|.+...
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999988753
No 112
>PRK13975 thymidylate kinase; Provisional
Probab=90.71 E-value=0.26 Score=43.93 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
++.|+|.|+.||||+|+.+.|.+....
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999987653
No 113
>PRK06547 hypothetical protein; Provisional
Probab=90.67 E-value=0.28 Score=44.18 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
......|+|.|++||||+|+.+.|.+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777799999999999999886
No 114
>PLN02165 adenylate isopentenyltransferase
Probab=90.59 E-value=0.31 Score=48.90 Aligned_cols=29 Identities=34% Similarity=0.721 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+.+|+|+||+||||+++...|.....
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 34567899999999999999999988754
No 115
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.56 E-value=0.24 Score=43.85 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+||+||||+|+...|.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 116
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.56 E-value=0.24 Score=40.84 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+.++|.|++|+||+++.++++...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998864
No 117
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.55 E-value=0.23 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+||+||||+|+..+|.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998764
No 118
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.49 E-value=0.26 Score=41.55 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
+|+|.||+|+||+++.+.++.....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999886543
No 119
>KOG2070|consensus
Probab=90.45 E-value=0.15 Score=53.35 Aligned_cols=41 Identities=17% Similarity=0.483 Sum_probs=34.4
Q ss_pred Ccccccccc---ccccceeEEEeecCCcchhhhhccCC-CCCccccCCh
Q psy12793 215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSP 259 (352)
Q Consensus 215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~ 259 (352)
+|.|.-++. +|.|||+|.|.-..+-.|| +|- +|.+|.||+-
T Consensus 23 kf~F~gsNnDELsf~KgDvItVTq~eeGGWW----EGTlng~TGWFPsn 67 (661)
T KOG2070|consen 23 KFNFQGSNNDELSFSKGDVITVTQVEEGGWW----EGTLNGRTGWFPSN 67 (661)
T ss_pred EeecccCCCceeccccCCEEEEEEeccCcce----eccccCccCccchH
Confidence 466664444 9999999999999999999 566 8999999993
No 120
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.33 E-value=0.19 Score=41.95 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..++|+|++|+||+|+.+.|....+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3578999999999999999998876553
No 121
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.30 E-value=0.31 Score=44.27 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
....|.|.|+|||||+|+.+.|....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34577889999999999999998865
No 122
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=90.28 E-value=0.27 Score=41.70 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.|+|+|++|+||+|+...|.+...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987653
No 123
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.21 E-value=0.3 Score=43.47 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+.+|||.|+.||||+|+.++|.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987643
No 124
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.20 E-value=0.5 Score=40.64 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..-|+|+|++||||+++.+++....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998753
No 125
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.19 E-value=0.56 Score=42.24 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+|.|.|++||||+|+.+.|....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998764
No 126
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.11 E-value=0.3 Score=41.20 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=20.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
..+..++|.||||+||+|+...+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356889999999999999998875
No 127
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=89.89 E-value=0.29 Score=49.17 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=72.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC-CCC-----------------------cccc--ccc-c---ccccceeEEEe
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF-PDK-----------------------YAYP--VPQ-F---ITVCSVMFQII 234 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~-p~~-----------------------F~~~--v~~-~---~~~~~~~~~vl 234 (352)
...+-.+||+|||||||+|+-+.++--. |+- |..- -|| + -+.-+....=+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~ 105 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV 105 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC
Confidence 3567899999999999999998886521 110 1100 111 0 12233333334
Q ss_pred ecCCcchhhhhccCCCCCccccCChh-----HHHHHHHHhhhc-cccccccccccccCCccccccccCCCC-----CCCC
Q psy12793 235 SKDDHNWWQARKDNVAGSAGLIPSPE-----LQEWRTACSTID-KTKHEQGIYSSFSLPFSVYRRDTTRSP-----RSDE 303 (352)
Q Consensus 235 ~k~~~~w~~~~~~~~~~~~g~~p~~~-----~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~r~~-----~~~e 303 (352)
+|++-+|=+...-...+-..|+-.+- =|+||-|.-+-. .++. .-++.-|.|.---+....+ +..+
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~----v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK----VFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC----EEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 55555554443322233333332211 256666666655 3322 1233334432111111112 2233
Q ss_pred cCCcceEEecHHHHHHHHHcCcEEE
Q psy12793 304 ENGRAYYFISHDEMMSDIAANQYLE 328 (352)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (352)
.-|...-|||||.+|.+.-+.+..-
T Consensus 182 ~l~~T~IYVTHDq~EAmtladri~V 206 (338)
T COG3839 182 RLGTTTIYVTHDQVEAMTLADRIVV 206 (338)
T ss_pred hcCCcEEEEcCCHHHHHhhCCEEEE
Confidence 5677889999999999887776543
No 128
>PRK06696 uridine kinase; Validated
Probab=89.67 E-value=0.23 Score=45.95 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+|.|.|++||||+|+.++|+...+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445777889999999999999988654
No 129
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.61 E-value=0.29 Score=44.07 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+|.|+||+||||+|+.+.|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998865
No 130
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.42 E-value=0.3 Score=46.09 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|||+||+||||+|+..+|.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998863
No 131
>PF13173 AAA_14: AAA domain
Probab=89.41 E-value=0.45 Score=40.06 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
++.++|.||.||||+|+..++++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999987654
No 132
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=89.33 E-value=0.42 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=24.7
Q ss_pred cccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 174 LVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 174 i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
+.+|.++..+....+ +++|+||||+||+|+...+.
T Consensus 9 fr~~~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 9 IRSFHERSEIEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred cccccCceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344444444443333 88999999999999999873
No 133
>PTZ00301 uridine kinase; Provisional
Probab=89.33 E-value=0.38 Score=44.89 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+|-|.|+|||||+|+.+.|+++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 466778999999999999887653
No 134
>PRK04040 adenylate kinase; Provisional
Probab=89.22 E-value=0.42 Score=43.57 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.+.|+|.|.+||||+|+.+.|.+..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998875
No 135
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.21 E-value=0.35 Score=40.50 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.++++..
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999874
No 136
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.14 E-value=0.37 Score=45.71 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=25.8
Q ss_pred ccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 175 ~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...|.|.. ....+..+|++||||+||+|+-+.++.
T Consensus 19 ~~le~vsL-~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 19 SALEDVSL-TIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred hhhhccce-eecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 34444442 234578999999999999999987765
No 137
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=88.96 E-value=0.5 Score=44.66 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999887754
No 138
>PRK14528 adenylate kinase; Provisional
Probab=88.93 E-value=0.41 Score=43.22 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+-|+|+||+||||+|+.++|...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458889999999999999997653
No 139
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=88.93 E-value=0.43 Score=42.64 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.+....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999887654
No 140
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.92 E-value=0.47 Score=42.68 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
..+..++|+||+|+||+|+.+.|+...|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 35778999999999999999988876553
No 141
>PRK13949 shikimate kinase; Provisional
Probab=88.91 E-value=0.44 Score=42.53 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+-|+|+|++|+||+|+...|.+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998764
No 142
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=88.89 E-value=0.44 Score=42.91 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+..++|+|+||+||+|+.+.|....
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999999888753
No 143
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.85 E-value=0.44 Score=43.10 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999987543
No 144
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.83 E-value=0.33 Score=40.15 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 688999999999999999774
No 145
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=88.83 E-value=0.42 Score=43.25 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
..+..++|+||||+||+|+.+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999998774
No 146
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=88.83 E-value=0.44 Score=43.16 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999887754
No 147
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.82 E-value=0.43 Score=43.93 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999887654
No 148
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.82 E-value=0.51 Score=44.38 Aligned_cols=34 Identities=15% Similarity=0.438 Sum_probs=24.1
Q ss_pred ccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 175 ~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
-+|..+..+.+. ....+|+||+|+||+++.+.+.
T Consensus 10 ~~~~~~~~~~~~-~~~~~i~G~NGsGKStll~ai~ 43 (247)
T cd03275 10 KSYKGRHVIGPF-DRFTCIIGPNGSGKSNLMDAIS 43 (247)
T ss_pred cccCCCeeecCC-CCeEEEECCCCCCHHHHHHHHH
Confidence 445543333333 3588999999999999998775
No 149
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.82 E-value=0.46 Score=41.88 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+..|+|.|++||||+|+.+.|....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999888754
No 150
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=88.79 E-value=0.44 Score=43.38 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999887543
No 151
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.78 E-value=0.44 Score=43.11 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999887654
No 152
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.74 E-value=0.44 Score=39.90 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|+|++||||+|+...|....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999864
No 153
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=88.67 E-value=0.44 Score=43.46 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999887543
No 154
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=88.62 E-value=0.44 Score=43.86 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.++...
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887653
No 155
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=88.59 E-value=0.46 Score=43.25 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999888754
No 156
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=88.58 E-value=0.42 Score=43.17 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
+|-|.|||||||+|+.++|......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3668899999999999999886553
No 157
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=88.58 E-value=0.43 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+++|.|.||+|+||+|+.+.|+...
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999998754
No 158
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=88.53 E-value=0.44 Score=41.49 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=21.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKFPDKY 216 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~p~~F 216 (352)
|+|+|++||||++|.+++...++..+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~~~~ 27 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKV 27 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccc
Confidence 78999999999999999987655433
No 159
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=88.49 E-value=0.46 Score=43.94 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999887654
No 160
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.48 E-value=0.4 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+.++|.|++|+||+++.+.++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45889999999999999999887643
No 161
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.48 E-value=0.42 Score=43.58 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+|+|+||+||||+|+...|+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999998887654
No 162
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=88.48 E-value=0.41 Score=42.16 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.3
Q ss_pred eEeccCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 180 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 180 V~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+..+++....-|+|+|.+|+||+++.++|...
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44455566677999999999999999999874
No 163
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.47 E-value=0.47 Score=43.85 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999988754
No 164
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.36 E-value=0.52 Score=43.98 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...++|.||+|+||+|+.+.+....+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988654
No 165
>PRK02496 adk adenylate kinase; Provisional
Probab=88.36 E-value=0.42 Score=42.50 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+||+||||+|+.+.|....
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998764
No 166
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.31 E-value=0.5 Score=42.94 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999887754
No 167
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.21 E-value=0.47 Score=45.12 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...+-.+.|+|||||||+||-+.+-.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999987754
No 168
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.20 E-value=0.5 Score=42.72 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999887754
No 169
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.16 E-value=0.51 Score=42.73 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999999987543
No 170
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.14 E-value=0.5 Score=43.57 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3467899999999999999999987654
No 171
>KOG1451|consensus
Probab=88.10 E-value=0.4 Score=51.20 Aligned_cols=40 Identities=25% Similarity=0.601 Sum_probs=31.7
Q ss_pred cccccccCceEEEee-ccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793 87 AGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPSPELQE 129 (352)
Q Consensus 87 ~~LsF~kGDIL~Vl~-~~D~~WWqaR~~~~~g~~GlIPS~~v~e 129 (352)
.+|+|..|-|+.=+- ...++|.+++ .+|..||||+||++.
T Consensus 771 selsf~~gt~f~nv~~S~e~Gwl~Gt---LnGktglip~nyve~ 811 (812)
T KOG1451|consen 771 SELSFEPGTIFTNVYESNEDGWLVGT---LNGKTGLIPSNYVEP 811 (812)
T ss_pred ccccccCcceeeeecccCCCCceeee---cCCCcccCcccccCc
Confidence 379999999988776 4456677776 378999999999863
No 172
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=88.04 E-value=0.52 Score=42.92 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999888754
No 173
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.99 E-value=0.49 Score=44.07 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.2
Q ss_pred cCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 184 PSFKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 184 p~~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
....+-++||.||||+||+|+.+.|...
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaN 60 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYAN 60 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhc
Confidence 3456889999999999999999998664
No 174
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=87.96 E-value=0.51 Score=43.11 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999887543
No 175
>COG1162 Predicted GTPases [General function prediction only]
Probab=87.88 E-value=0.37 Score=47.66 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..++..||+|+|||||+||.++|.-+
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCch
Confidence 45789999999999999999999653
No 176
>PRK13946 shikimate kinase; Provisional
Probab=87.85 E-value=0.68 Score=41.54 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+.|+|+|.+||||+|+.+.|.+..
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998864
No 177
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=87.84 E-value=0.5 Score=43.06 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999887653
No 178
>PRK00279 adk adenylate kinase; Reviewed
Probab=87.77 E-value=0.52 Score=43.20 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.|+|+||+||||+|+..+|...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388899999999999999987643
No 179
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.77 E-value=0.57 Score=42.47 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999998877543
No 180
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=87.76 E-value=0.66 Score=40.57 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+.|+|+|++|+||+|+.+.|.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998864
No 181
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=87.70 E-value=0.57 Score=42.51 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.+....
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887654
No 182
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=87.68 E-value=0.52 Score=41.42 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.-|+|+|++||||+++..++....+
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4469999999999999999987543
No 183
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.68 E-value=0.57 Score=42.95 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 35678999999999999999999987654
No 184
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=87.66 E-value=0.58 Score=43.48 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
...++.|+||+||||+|+.+.|+...+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4567888999999999999999886554
No 185
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=87.64 E-value=0.51 Score=43.46 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999887654
No 186
>PRK01184 hypothetical protein; Provisional
Probab=87.63 E-value=0.57 Score=41.55 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..|+|+|++||||+|+.. ++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 478899999999999875 5554
No 187
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.60 E-value=0.53 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.++|+||+||||+++.+.|.+.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~ 26 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAEL 26 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999998875
No 188
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=87.55 E-value=0.58 Score=43.33 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468899999999999999999988654
No 189
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=87.53 E-value=0.57 Score=43.27 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||+|+||+|+.+.|....+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999887643
No 190
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=87.51 E-value=0.54 Score=38.54 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=29.4
Q ss_pred cccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793 87 AGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128 (352)
Q Consensus 87 ~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~ 128 (352)
..|+.++|++|.|+...+.+=|-+| |..|+-|+||..++.
T Consensus 31 kDLpi~~GE~LeVI~~t~~~kvlCR--N~~GKYGYV~~~~L~ 70 (89)
T PF14603_consen 31 KDLPIKPGEILEVIQFTDDNKVLCR--NSEGKYGYVLRSHLL 70 (89)
T ss_dssp TB----TT-B-EEEEESSSSEEEEE--ETTTEEEEEEGGGS-
T ss_pred ccCCcCCCCEEEEEEeCCCCeEEEe--CCCCceeEEEHHHcc
Confidence 3699999999999999888889999 678999999988764
No 191
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=87.50 E-value=0.5 Score=39.81 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.+++...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999875
No 192
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=87.44 E-value=0.61 Score=42.26 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999888764
No 193
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.43 E-value=0.62 Score=44.13 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFPDK 215 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p~~ 215 (352)
.+|-|.|+|||||+|+.++|...++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456667999999999999999987743
No 194
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.43 E-value=0.59 Score=42.37 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999887653
No 195
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=87.41 E-value=0.43 Score=41.58 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|+.|+||+||.+.|.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 196
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=87.41 E-value=0.53 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.+++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999863
No 197
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=87.36 E-value=0.55 Score=40.04 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+|++||||++|.++|...+
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 7889999999999999997653
No 198
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=87.36 E-value=0.6 Score=41.39 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+-|.|+||+|+||+||.++|..+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457889999999999999997754
No 199
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=87.36 E-value=0.67 Score=42.51 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999999999998765
No 200
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=87.35 E-value=0.61 Score=41.97 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999887543
No 201
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=87.34 E-value=0.56 Score=45.46 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+|||||||+||-+.|..-
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999988764
No 202
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.33 E-value=0.62 Score=42.58 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999888754
No 203
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.32 E-value=0.59 Score=42.72 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887653
No 204
>PLN02674 adenylate kinase
Probab=87.29 E-value=0.56 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..|+|+||+||||+|+..+|++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458889999999999999998865
No 205
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=87.25 E-value=0.55 Score=38.31 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++|+||+|+.+.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 678999999999999999974
No 206
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=87.23 E-value=0.54 Score=39.30 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.+++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999864
No 207
>PRK09087 hypothetical protein; Validated
Probab=87.22 E-value=0.41 Score=44.92 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=25.9
Q ss_pred cceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 176 TYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 176 sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|..+.+.+....++++|.||+|+||++|.+.+....
T Consensus 32 a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 32 AVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred HHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3443433333345779999999999999999776543
No 208
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=87.16 E-value=0.47 Score=39.61 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
-|+|+|.+||||++|.++++...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 37899999999999999997653
No 209
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.15 E-value=0.63 Score=40.21 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.|....+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35678999999999999999998877543
No 210
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.12 E-value=0.64 Score=43.19 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999998877543
No 211
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.12 E-value=0.67 Score=41.15 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999999986544
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=87.09 E-value=0.52 Score=39.29 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy12793 191 LVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~ 210 (352)
|+|+|++|+||+++.+.|+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999983
No 213
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=87.09 E-value=0.73 Score=40.73 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.|....+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34678999999999999999999887543
No 214
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=87.08 E-value=0.6 Score=42.92 Aligned_cols=28 Identities=14% Similarity=0.424 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4678999999999999999998877644
No 215
>KOG2546|consensus
Probab=87.08 E-value=0.42 Score=49.18 Aligned_cols=47 Identities=23% Similarity=0.555 Sum_probs=40.9
Q ss_pred HHhhCCCCcccccccc---ccccceeEEEeecCCcchhhhhccCC-CCCccccCC
Q psy12793 208 LINKFPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPS 258 (352)
Q Consensus 208 L~~~~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~ 258 (352)
++++.-.+|.|.+..+ +|.-+-||=||-|+|..|| +|. .|++||||+
T Consensus 422 yLEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~----EgV~~~VTglFpg 472 (483)
T KOG2546|consen 422 YLEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWY----EGVQDGVTGLFPG 472 (483)
T ss_pred HHHHHHhhcccccccccccccccccEEEEEEecCCcch----hheecCcceeccC
Confidence 4466667788887766 9999999999999999999 777 899999998
No 216
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=87.06 E-value=0.65 Score=42.02 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.+....+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999876543
No 217
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=87.04 E-value=0.51 Score=44.27 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+|||+|++||||+|+.+.|....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 218
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=87.04 E-value=0.65 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+|+|.|++||||+|+..+|+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578889999999999999998874
No 219
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.04 E-value=0.67 Score=41.71 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+|++|+||+|+.+.|+...+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34678999999999999999999987643
No 220
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.02 E-value=0.65 Score=43.10 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998754
No 221
>KOG2528|consensus
Probab=87.02 E-value=0.26 Score=50.85 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=46.2
Q ss_pred eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhHHHH
Q psy12793 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQEWR 131 (352)
Q Consensus 67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~e~r 131 (352)
..|++||+..+..+ +|+...||++.|.+.++ ++||+.+ |..|..|++|--|++--+
T Consensus 4 k~RamyDf~~E~~s-------Elsi~~~evl~i~~e~~~~GwLeg~--Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHS-------ELSIWEGEVLSITSEDVIEGWLEGS--NSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccc-------cccccccceeeecCcccccccccCC--CccCccCCCcccceeeec
Confidence 46889999887543 69999999999999875 6788887 668899999999998655
No 222
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=87.01 E-value=0.6 Score=42.41 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999887654
No 223
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=86.99 E-value=0.65 Score=42.68 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999987753
No 224
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.99 E-value=0.83 Score=41.18 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=25.6
Q ss_pred ccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 173 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 173 ~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
+.-+|+++...+.. .++.+|+||+|+||+++.+.+.
T Consensus 8 nf~~~~~~~~~~~~-~~~~~i~G~NGsGKSnil~Ai~ 43 (178)
T cd03239 8 NFKSYRDETVVGGS-NSFNAIVGPNGSGKSNIVDAIC 43 (178)
T ss_pred CccCCCCCEEecCC-CceEEEECCCCCCHHHHHHHHH
Confidence 34567665544332 2388999999999999998763
No 225
>PRK10908 cell division protein FtsE; Provisional
Probab=86.98 E-value=0.66 Score=42.46 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999999887543
No 226
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=86.98 E-value=0.67 Score=42.53 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.+....
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999988764
No 227
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.96 E-value=0.68 Score=42.03 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
....+|+|.||+||||+++...+.++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999987653
No 228
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=86.95 E-value=0.66 Score=42.88 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999887654
No 229
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=86.89 E-value=0.66 Score=43.88 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999999987643
No 230
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=86.83 E-value=0.67 Score=42.16 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+|+||+||+|+.+.|....+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999998877543
No 231
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=86.81 E-value=0.64 Score=42.78 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+.|+|+||+||||+|-..+|+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHH
Confidence 57889999999999999999875
No 232
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=86.77 E-value=0.69 Score=42.13 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4688999999999999999999887543
No 233
>KOG0058|consensus
Probab=86.76 E-value=1 Score=49.28 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=37.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC-CCCccccccccccccceeEEEeecCCcchhhhhccCC-CCCccccCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF-PDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPS 258 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~-p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~ 258 (352)
++..+-|+||||+||+|+...|.+-+ |. .-+ ++.-| ..|..-||.||. +.-|. ---+.||..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt-----sG~-IllDG---~~i~~~~~~~lr-~~Ig~V~QEPvLFs~ 556 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT-----SGR-ILLDG---VPISDINHKYLR-RKIGLVGQEPVLFSG 556 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC-----CCe-EEECC---eehhhcCHHHHH-HHeeeeeccceeecc
Confidence 56789999999999999999887742 22 111 11111 345778999995 44433 223344443
No 234
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=86.75 E-value=0.7 Score=42.61 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999887754
No 235
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=86.74 E-value=0.66 Score=42.86 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999998875
No 236
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=86.70 E-value=0.73 Score=40.20 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.3
Q ss_pred CCCcEEEEE--cCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLL--GAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~--GPsG~gk~tl~~~L~~~ 211 (352)
.+.+|+||+ |++|+||+.+.+.+++.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 466778864 99999999999888775
No 237
>KOG3523|consensus
Probab=86.64 E-value=0.23 Score=53.07 Aligned_cols=51 Identities=20% Similarity=0.540 Sum_probs=41.9
Q ss_pred cccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793 72 FNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 130 (352)
Q Consensus 72 fDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~ 130 (352)
-.|.+...+ +|++..+||+.|+.+..++|..+.+.. .|..|++|+.|+++-
T Consensus 615 ~sy~a~q~D-------el~Le~~Dvv~v~~k~~DGWl~GeRl~-Dge~GWFP~~~veeI 665 (695)
T KOG3523|consen 615 HSYKAKQPD-------ELTLELADVVNVLQKTPDGWLEGERLR-DGERGWFPSSYVEEI 665 (695)
T ss_pred eccccCCCc-------eeeeehhhhhhhhhcCCCccccccccc-cCccCcchHHHHHHh
Confidence 346665544 799999999999999999999888754 688999999999863
No 238
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.64 E-value=0.71 Score=40.83 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998877543
No 239
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.62 E-value=0.64 Score=42.15 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+ .+.|+||||+||+|+.+.|....
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 36 88999999999999999887653
No 240
>KOG3875|consensus
Probab=86.58 E-value=0.2 Score=49.74 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=34.5
Q ss_pred cccccccc---ccccceeEEEeecCCc-----chhhhhccCCCCCccccCC
Q psy12793 216 YAYPVPQF---ITVCSVMFQIISKDDH-----NWWQARKDNVAGSAGLIPS 258 (352)
Q Consensus 216 F~~~v~~~---~~~~~~~~~vl~k~~~-----~w~~~~~~~~~~~~g~~p~ 258 (352)
|+|.+.+. +|.+||+++|++|+|. +||+++.. -.+-+|+||.
T Consensus 275 YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~-dg~~tG~iP~ 324 (362)
T KOG3875|consen 275 YDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATR-DGGTTGLIPI 324 (362)
T ss_pred hhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeec-cCCeeeeeeh
Confidence 66665554 8999999999999985 59998876 5677899998
No 241
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=86.56 E-value=0.67 Score=42.56 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.++.|+|+||+|+||++|-.+|...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999886
No 242
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=86.54 E-value=0.66 Score=39.57 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+.|+|+|.+||||+++.++|.....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999988643
No 243
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=86.54 E-value=0.67 Score=43.28 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998887644
No 244
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=86.53 E-value=0.62 Score=39.54 Aligned_cols=21 Identities=14% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.++|+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999864
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.52 E-value=0.77 Score=44.40 Aligned_cols=28 Identities=14% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+++++|+||+|+||+.+.+.++...+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCC
Confidence 4689999999999999999988777544
No 246
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=86.49 E-value=0.68 Score=43.25 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999998864
No 247
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.45 E-value=0.74 Score=40.48 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.+....+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999998877543
No 248
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.42 E-value=0.75 Score=41.87 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.+....+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34688999999999999999998887644
No 249
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=86.42 E-value=0.66 Score=40.53 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...+.||.||+|+||+|+...+.-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987643
No 250
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=86.41 E-value=0.75 Score=41.72 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
....+++|.|++||||+++...+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 345677888999999999999998875
No 251
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.38 E-value=0.82 Score=41.66 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCCCC-cccc-ccccccccceeEEEeecCCcchhhhhccCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFPDK-YAYP-VPQFITVCSVMFQIISKDDHNWWQARKDNV 249 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~-F~~~-v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~ 249 (352)
...+.|+|++||||+|+..+|+...... +... +-| .+.-+.+ ++...+.|+.++.|-
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~----~~~~~~~-d~~g~Ds~~~r~aGA 64 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH----THHDMDV-DKPGKDSYELRKAGA 64 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE----cCCCccc-CCCCcHHHHHHHhCC
Confidence 4577889999999999999998764321 2111 111 1111222 455677787777664
No 252
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=86.38 E-value=0.74 Score=42.71 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999987754
No 253
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=86.35 E-value=0.65 Score=42.64 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
++.++|+||||+||+|+.+.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 58999999999999999987754
No 254
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=86.34 E-value=0.79 Score=40.79 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.+....
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887654
No 255
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=86.32 E-value=0.64 Score=39.10 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+++|++||||+++.+++...
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999763
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.31 E-value=0.77 Score=42.19 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..++++|.||+|+||+++...+..+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988775
No 257
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=86.24 E-value=0.7 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.+.++++|+|||||+|+.++|...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 468999999999999999999864
No 258
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=86.22 E-value=0.74 Score=42.32 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998877543
No 259
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=86.21 E-value=0.75 Score=42.66 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34688999999999999999999887543
No 260
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=86.18 E-value=0.79 Score=41.29 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998877543
No 261
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.14 E-value=0.81 Score=41.33 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.+....+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999998877543
No 262
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.13 E-value=0.84 Score=41.37 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+..|+|+|++|+||+|+...|....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887753
No 263
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=86.09 E-value=0.83 Score=40.31 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.|....+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999998877543
No 264
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=86.08 E-value=0.75 Score=47.02 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
++..+.|+|+|++|+||+||.+.|...+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4667899999999999999999999864
No 265
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.07 E-value=0.77 Score=42.78 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999888754
No 266
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=86.03 E-value=0.74 Score=42.52 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34688999999999999999998877543
No 267
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=85.99 E-value=0.78 Score=42.50 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999998877543
No 268
>PRK14529 adenylate kinase; Provisional
Probab=85.99 E-value=0.64 Score=43.93 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+||+||||+|+.++|...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999998864
No 269
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=85.97 E-value=0.68 Score=38.37 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..|+|+|++|+||+|+.+++...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 270
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=85.96 E-value=0.85 Score=40.41 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||+|+||+|+.+.|....+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999887644
No 271
>PRK04182 cytidylate kinase; Provisional
Probab=85.96 E-value=0.81 Score=39.75 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|+|++||||+|+.+.|++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998764
No 272
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.92 E-value=0.76 Score=41.38 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999988754
No 273
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=85.79 E-value=0.82 Score=42.55 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999887654
No 274
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.78 E-value=0.72 Score=46.60 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
..+-.+.|+|||||||+|+-+.++-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999988866
No 275
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.77 E-value=0.83 Score=42.01 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||+|+||+|+.+.|....+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4678999999999999999998877643
No 276
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=85.74 E-value=0.63 Score=40.07 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=18.2
Q ss_pred EEcCCCCChhHHHHHHHhhC
Q psy12793 193 LLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 193 L~GPsG~gk~tl~~~L~~~~ 212 (352)
|+||+||||+|+..+|...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999874
No 277
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=85.71 E-value=1 Score=41.66 Aligned_cols=21 Identities=14% Similarity=0.553 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCChhHHHHHHH
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~ 209 (352)
..+.|+||||+||+|+.+.+.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999875
No 278
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=85.71 E-value=0.74 Score=43.00 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999998887643
No 279
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.70 E-value=0.83 Score=42.27 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=21.3
Q ss_pred cCCCCcEEEEEcCCCCChhHHHHHH
Q psy12793 184 PSFKRKTLVLLGAHGVGRRHIKNTL 208 (352)
Q Consensus 184 p~~~~r~iVL~GPsG~gk~tl~~~L 208 (352)
....+-.+||+||||+||+++.+-|
T Consensus 24 ~~~~getlvllgpsgagkssllr~l 48 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVL 48 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHH
Confidence 3456789999999999999998865
No 280
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=85.70 E-value=0.85 Score=41.33 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||+|+||+|+.+.|....+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998887644
No 281
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=85.65 E-value=0.86 Score=41.71 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999887754
No 282
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.61 E-value=0.86 Score=41.97 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.|....+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34688999999999999999999987543
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.58 E-value=0.94 Score=39.96 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.+....+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34688999999999999999998887644
No 284
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.57 E-value=0.77 Score=44.30 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...+-.+.|+||||+||+|+-+.++.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999987765
No 285
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=85.54 E-value=0.95 Score=41.50 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHH
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
+..++|+||+|+||+|+.+.+.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 5689999999999999998775
No 286
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.53 E-value=0.54 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+..++|+||+||||+|+..+|+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999998753
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=85.50 E-value=0.92 Score=41.06 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||+|+||+|+.+.|....+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678999999999999999998877543
No 288
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=85.50 E-value=0.83 Score=40.52 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHh-hCCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLIN-KFPD 214 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~-~~p~ 214 (352)
-|+|+|++|+||+++.+++.. .++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~ 28 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE 28 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 478899999999999999973 4444
No 289
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=85.49 E-value=0.76 Score=37.34 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
-|+|+|.+||||+++.+++....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37889999999999999998754
No 290
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=85.49 E-value=0.84 Score=40.69 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998877543
No 291
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=85.48 E-value=0.77 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..++|+|.||+|+||+|..+.|+++
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988876
No 292
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=85.48 E-value=0.84 Score=42.18 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||+|+||+|+.+.++...
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999887753
No 293
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.44 E-value=0.81 Score=43.96 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999987643
No 294
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=85.41 E-value=0.75 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+++|++||||+++.+++...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 688999999999999999864
No 295
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=85.41 E-value=0.87 Score=42.18 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|+...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999888754
No 296
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.40 E-value=0.94 Score=42.61 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999988654
No 297
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=85.39 E-value=0.79 Score=43.41 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678999999999999999998877543
No 298
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=85.33 E-value=0.92 Score=40.95 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.+....+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 35688999999999999999998877543
No 299
>PRK13948 shikimate kinase; Provisional
Probab=85.29 E-value=1.1 Score=40.80 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..++|+|+|..||||+|+...|.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 300
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.29 E-value=0.89 Score=42.46 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999887754
No 301
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=85.26 E-value=0.86 Score=43.38 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887754
No 302
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.26 E-value=0.89 Score=43.27 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999999887543
No 303
>PRK14526 adenylate kinase; Provisional
Probab=85.25 E-value=0.81 Score=42.61 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+||+||||+|+.+.|...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999988754
No 304
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=85.25 E-value=1 Score=42.11 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..|.|.||+|+||+|+.+.|.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999999999987654
No 305
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=85.25 E-value=0.81 Score=38.47 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|+|.+||||+++.++|....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~ 24 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE 24 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc
Confidence 58899999999999999998643
No 306
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=85.25 E-value=0.89 Score=41.41 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45688999999999999999999987644
No 307
>COG4639 Predicted kinase [General function prediction only]
Probab=85.25 E-value=0.64 Score=42.23 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..++||+|++||||+|.....+.+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~ 25 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQ 25 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCC
Confidence 468999999999999988765443
No 308
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=85.25 E-value=0.75 Score=39.21 Aligned_cols=21 Identities=38% Similarity=0.825 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.+++...
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 788999999999999999874
No 309
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.24 E-value=0.82 Score=41.57 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4678999999999999999998877543
No 310
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=85.17 E-value=0.76 Score=41.26 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.-||++|+.||||+|+..+|+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 458889999999999999998754
No 311
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=85.13 E-value=0.91 Score=41.91 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 468899999999999999999988754
No 312
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=85.13 E-value=0.9 Score=42.49 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999887654
No 313
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.12 E-value=0.91 Score=43.09 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999887754
No 314
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=85.11 E-value=0.91 Score=39.97 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=24.0
Q ss_pred ccCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 183 ~p~~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
++.....-|+|+|++|+||+++.++|...
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44455667899999999999999999875
No 315
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.10 E-value=0.89 Score=43.05 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|+..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46889999999999999999998764
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.09 E-value=0.7 Score=43.11 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcc--hhhhhccCCCCCccccCChhHHHHHHHH
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHN--WWQARKDNVAGSAGLIPSPELQEWRTAC 268 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~--w~~~~~~~~~~~~g~~p~~~~~~~r~~~ 268 (352)
|-|+|||||||+|+.+.|........ .+..+.|++-++-. .++.+..|.....|+..+=.++...+..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~----------~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L 71 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWP----------DHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFL 71 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcC----------CCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHH
Confidence 55789999999999999987642100 01123445555443 2333334433334554444455555555
Q ss_pred hhhcc
Q psy12793 269 STIDK 273 (352)
Q Consensus 269 ~~~~~ 273 (352)
..+..
T Consensus 72 ~~l~~ 76 (220)
T cd02025 72 KDIKS 76 (220)
T ss_pred HHHHC
Confidence 55443
No 317
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=85.09 E-value=0.9 Score=43.23 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999888754
No 318
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=85.03 E-value=1.1 Score=38.73 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|.|++||||+|+.+.|.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58889999999999999998763
No 319
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.03 E-value=1 Score=41.98 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34688999999999999999999987543
No 320
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.02 E-value=0.95 Score=42.20 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999888754
No 321
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=85.00 E-value=0.79 Score=39.24 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy12793 191 LVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~ 210 (352)
|+|+|++||||+++..+++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78899999999999988875
No 322
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.00 E-value=0.93 Score=42.43 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+|+||+||+|+.+.|....+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4678999999999999999999877543
No 323
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=85.00 E-value=0.94 Score=41.42 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.+....+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998877543
No 324
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=84.98 E-value=0.78 Score=38.78 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+|++||||+++.+++....
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6889999999999999998653
No 325
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=84.98 E-value=0.84 Score=38.20 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+++|++||||+++.++++..
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999874
No 326
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=84.98 E-value=0.99 Score=41.36 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999998877543
No 327
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=84.97 E-value=0.88 Score=41.81 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
+|.|.|++||||+|+.+.|.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 367889999999999999998753
No 328
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=84.97 E-value=0.79 Score=39.18 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++..+++..
T Consensus 5 i~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 778899999999999999864
No 329
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=84.96 E-value=0.99 Score=41.13 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||+|+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999887654
No 330
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.94 E-value=0.94 Score=43.09 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34678999999999999999998877543
No 331
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=84.92 E-value=0.97 Score=42.13 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+|+||+||+|+.+.|....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999999988654
No 332
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=84.86 E-value=0.92 Score=42.64 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999988754
No 333
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=84.85 E-value=0.84 Score=38.84 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+++|++||||+++.++|....
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6889999999999999998753
No 334
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=84.83 E-value=0.96 Score=38.41 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy12793 191 LVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~ 210 (352)
|+++|++||||+++..++..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68899999999999999975
No 335
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=84.79 E-value=0.87 Score=45.12 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
+...+.|+|+|++|+||+||.+.|....
T Consensus 159 ~~~~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 159 PFFVKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4446789999999999999999999863
No 336
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=84.74 E-value=1.1 Score=39.88 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+.+|+|.|++|+||+|+.+.|....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999988764
No 337
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=84.73 E-value=1.3 Score=39.90 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..++|+|++||||+++...++....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC
Confidence 3688899999999999999988754
No 338
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=84.72 E-value=0.96 Score=41.88 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999988754
No 339
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.70 E-value=0.9 Score=43.17 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999887654
No 340
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=84.65 E-value=0.88 Score=38.40 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+|+|++||||+++..+++..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788999999999999998863
No 341
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=84.59 E-value=0.93 Score=41.15 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
.+..++|+||+|+||+|+.+.+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 45899999999999999999887
No 342
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=84.59 E-value=0.88 Score=43.08 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4688999999999999999998887654
No 343
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=84.57 E-value=0.96 Score=42.07 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|+...
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999988754
No 344
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=84.57 E-value=0.96 Score=43.87 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999987754
No 345
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=84.56 E-value=1 Score=41.66 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.+....+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999998887643
No 346
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=84.55 E-value=0.96 Score=42.72 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999887543
No 347
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=84.53 E-value=1 Score=41.21 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999998887543
No 348
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=84.52 E-value=0.97 Score=42.99 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..++|+||||+||+|+.+.|....
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887654
No 349
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.52 E-value=0.52 Score=48.40 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR 265 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r 265 (352)
..++.|+|+||.||||+|=..+|+..+- ..+...++-+..+|.++|=+.++..|. |+.=| .+.-...++++|++.=
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~--~~~~~~kVaiITtDtYRIGA~EQLk~Y-a~im~-vp~~vv~~~~el~~ai 276 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYV--MLKKKKKVAIITTDTYRIGAVEQLKTY-ADIMG-VPLEVVYSPKELAEAI 276 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHH--hhccCcceEEEEeccchhhHHHHHHHH-HHHhC-CceEEecCHHHHHHHH
Confidence 3489999999999999998889987643 123344446778888888777777666 11111 2333455666666554
Q ss_pred HHHh
Q psy12793 266 TACS 269 (352)
Q Consensus 266 ~~~~ 269 (352)
..+.
T Consensus 277 ~~l~ 280 (407)
T COG1419 277 EALR 280 (407)
T ss_pred HHhh
Confidence 4443
No 350
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=84.51 E-value=0.97 Score=42.92 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999999877543
No 351
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=84.51 E-value=1.1 Score=40.88 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+.|||+|+.|+||+|+-+.|++.-
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc
Confidence 4679999999999999999998753
No 352
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=84.51 E-value=0.9 Score=39.07 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+|++||||++|.+++....
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7889999999999999998753
No 353
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=84.51 E-value=0.87 Score=38.53 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+++|++||||+++.++|....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6889999999999999998753
No 354
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=84.49 E-value=0.99 Score=42.08 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999998764
No 355
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=84.48 E-value=0.95 Score=42.65 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999987654
No 356
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=84.47 E-value=1.1 Score=40.82 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.+ .++|+||||+||+|+.+.+.--
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHH
Confidence 35 8899999999999999988643
No 357
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=84.44 E-value=0.98 Score=38.88 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+-|+|+|++||||+++..++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999873
No 358
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=84.43 E-value=0.99 Score=42.91 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999998887643
No 359
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.42 E-value=0.96 Score=41.14 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.. ..+.|+||||+||+|+.+.|....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 789999999999999999887654
No 360
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.40 E-value=1 Score=42.06 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467899999999999999999888643
No 361
>PRK12289 GTPase RsgA; Reviewed
Probab=84.40 E-value=0.77 Score=46.20 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+++|+|+|||||+||.+.|+..
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCc
Confidence 457899999999999999999854
No 362
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=84.38 E-value=0.99 Score=42.06 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999988754
No 363
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.36 E-value=1 Score=45.85 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..++|+||+||||+|+..+|....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998753
No 364
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=84.33 E-value=1 Score=43.30 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998877543
No 365
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=84.31 E-value=0.86 Score=39.49 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy12793 191 LVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~ 210 (352)
|+|+|++||||+++..++..
T Consensus 7 i~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68899999999999999976
No 366
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=84.31 E-value=1 Score=42.65 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999887754
No 367
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.27 E-value=1 Score=42.14 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999988753
No 368
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=84.26 E-value=0.91 Score=39.32 Aligned_cols=85 Identities=7% Similarity=0.164 Sum_probs=44.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhh-CCCCcccccccc----cc---ccceeEEEeecCCcchhhh--hccCCCCCccc----
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF----IT---VCSVMFQIISKDDHNWWQA--RKDNVAGSAGL---- 255 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~----~~---~~~~~~~vl~k~~~~w~~~--~~~~~~~~~g~---- 255 (352)
-|+++|++||||+++.++++.. ++..+...+..+ .+ .+.-.++|++-...+.+.. ...-....-++
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~ 83 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVY 83 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEE
Confidence 4788999999999999999763 233222222111 11 1223566776555444321 11111222222
Q ss_pred --cCChhHHHHHHHHhhhccc
Q psy12793 256 --IPSPELQEWRTACSTIDKT 274 (352)
Q Consensus 256 --~p~~~~~~~r~~~~~~~~~ 274 (352)
--..+|+..+.....+.+.
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~ 104 (170)
T cd04115 84 DVTNMASFHSLPSWIEECEQH 104 (170)
T ss_pred ECCCHHHHHhHHHHHHHHHHh
Confidence 2346777777766666543
No 369
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.16 E-value=1 Score=43.55 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.++.|+|+||+||||+|...+|+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998754
No 370
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.13 E-value=0.97 Score=43.35 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFPDKY 216 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p~~F 216 (352)
-+||+|++||||+++...|+...+..|
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 467789999999999999988776665
No 371
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.12 E-value=1.1 Score=41.48 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+|+||+||+|+.+.|....+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999999987644
No 372
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=84.12 E-value=0.94 Score=39.02 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+|+|++||||+++.+++...
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4788999999999999999864
No 373
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=84.09 E-value=1.1 Score=42.33 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999888754
No 374
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=84.08 E-value=0.93 Score=39.42 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 375
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=84.08 E-value=1.1 Score=41.33 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+|+||+||+|+.+.|....
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999988754
No 376
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.03 E-value=1.1 Score=42.09 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.+.++|.||+|+||+++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999877653
No 377
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.03 E-value=1.1 Score=42.76 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35688999999999999999999887543
No 378
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.02 E-value=1.1 Score=41.92 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+|+||+||+|+.+.|...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999998764
No 379
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=84.01 E-value=0.96 Score=38.19 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+|++||||+++.++++...
T Consensus 3 i~liG~~~~GKSsli~~l~~~~ 24 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7889999999999999998653
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.01 E-value=1.1 Score=43.91 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDK 215 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~ 215 (352)
..+..++|+||+||||+|+.+.|+...|..
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~ 171 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKD 171 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCcc
Confidence 357899999999999999999998877653
No 381
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=83.99 E-value=0.94 Score=38.76 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
.-|+|+|++||||+++..++..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4578899999999999999875
No 382
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=83.98 E-value=1.2 Score=42.28 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999988754
No 383
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=83.97 E-value=1.1 Score=36.94 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+++|++||||+++.+++....
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6789999999999999997753
No 384
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=83.96 E-value=1.1 Score=42.10 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999998877543
No 385
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.96 E-value=1.1 Score=41.81 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678999999999999999999887643
No 386
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=83.94 E-value=1.1 Score=42.25 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999988754
No 387
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.92 E-value=1 Score=42.88 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999887754
No 388
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=83.88 E-value=1 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.-|+|+|++||||+++.+++....
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~ 38 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGED 38 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCC
Confidence 357889999999999999998753
No 389
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=83.88 E-value=1.1 Score=43.50 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999888753
No 390
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=83.88 E-value=1.1 Score=40.57 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+|+||+||+|+.+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999988765
No 391
>PRK12288 GTPase RsgA; Reviewed
Probab=83.83 E-value=0.72 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.600 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.++++|+|+|||||+||.+.|+..
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccc
Confidence 467899999999999999999854
No 392
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=83.80 E-value=1.2 Score=40.72 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.+....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999887654
No 393
>KOG0744|consensus
Probab=83.78 E-value=1.3 Score=44.93 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCC-cchhhhhccCCCCCccccCChhHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPSPELQEWR 265 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~~~~~~~r 265 (352)
..|+|.|.||+|.||+++.+.|+++-.-+ .++...+|++|.|=+-.= .-|+ +-+|=+=++-||.+-
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR-----~~~~y~~~~liEinshsLFSKWF--------sESgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR-----TNDRYYKGQLIEINSHSLFSKWF--------SESGKLVAKMFQKIQ 242 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee-----ecCccccceEEEEehhHHHHHHH--------hhhhhHHHHHHHHHH
Confidence 45899999999999999999998863221 122344566666532221 2366 344555566677766
Q ss_pred HHHh
Q psy12793 266 TACS 269 (352)
Q Consensus 266 ~~~~ 269 (352)
++.+
T Consensus 243 ELv~ 246 (423)
T KOG0744|consen 243 ELVE 246 (423)
T ss_pred HHHh
Confidence 6543
No 394
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=83.77 E-value=1 Score=41.85 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999988775
No 395
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=83.75 E-value=1 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
.-|+|+|++||||+++.+++..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588899999999999999985
No 396
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=83.71 E-value=1.1 Score=42.04 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+|+||+||+|+.+.|....+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999887543
No 397
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=83.70 E-value=1.1 Score=41.98 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+|+||+||+|+.+.+....+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999998887654
No 398
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=83.70 E-value=1 Score=45.60 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+|+++|+||.|+||+|+..+|.+.
T Consensus 86 ~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 86 ERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988764
No 399
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.68 E-value=1.1 Score=38.92 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|.++|+++|||+|+...|++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999998853
No 400
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=83.58 E-value=1 Score=42.23 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....|
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678999999999999999998876554
No 401
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=83.57 E-value=1 Score=38.68 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|.+||||+++.++++..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999998763
No 402
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.57 E-value=1.2 Score=41.66 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+|+||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999998764
No 403
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=83.55 E-value=0.94 Score=40.64 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|||+|++||||+++.++++..
T Consensus 3 ivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 404
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=83.51 E-value=1.2 Score=40.35 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||+|+||+|+.+.|+...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999988765
No 405
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=83.46 E-value=1.3 Score=42.13 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999999888754
No 406
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=83.43 E-value=1 Score=41.57 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999887654
No 407
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.42 E-value=1.2 Score=42.66 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468899999999999999999998754
No 408
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=83.41 E-value=1.2 Score=42.15 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.+....
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999887653
No 409
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.40 E-value=1.1 Score=46.61 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.++..+.|+||||+||+|+.+.|....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999887654
No 410
>PRK06893 DNA replication initiation factor; Validated
Probab=83.38 E-value=1.1 Score=41.68 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+.++|.||+|+||+++...+.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988764
No 411
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=83.36 E-value=1.2 Score=36.91 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+|+|++|+||+++.+++...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999764
No 412
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=83.34 E-value=1 Score=41.91 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+|+||+||+|+.+.|...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999987763
No 413
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.34 E-value=1 Score=37.53 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
++|.|++|+||+++...++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6789999999999999887754
No 414
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=83.28 E-value=1.2 Score=42.14 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...|||.|+-|+||+||.++|.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46799999999999999999998755
No 415
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.27 E-value=1.2 Score=42.88 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999887543
No 416
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=83.26 E-value=0.93 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++..++...
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHccc
Confidence 688999999999999999874
No 417
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=83.26 E-value=1.1 Score=40.85 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+.|+|+|+.|+||+|+.++++....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567889999999999999999988643
No 418
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=83.25 E-value=1.1 Score=37.99 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.|+|+|.+||||+++.++|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 5889999999999999999864
No 419
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.15 E-value=1.2 Score=41.58 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999988765
No 420
>PRK00625 shikimate kinase; Provisional
Probab=83.15 E-value=1.2 Score=40.13 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|+|.+||||+|+.+.|.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998763
No 421
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=83.11 E-value=1.1 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+++|++||||+++.++++..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999753
No 422
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=83.10 E-value=1.1 Score=38.28 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+|.+||||+|+.++|....
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC
Confidence 7889999999999999998654
No 423
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.10 E-value=1.2 Score=41.50 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+|+||+||+|+.+.|....
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999887653
No 424
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=83.08 E-value=1.1 Score=37.78 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+|+|++||||+++..+++..
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3788999999999999998764
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=83.06 E-value=1.1 Score=40.75 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHh-hCCCCc
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLIN-KFPDKY 216 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~-~~p~~F 216 (352)
--|+|+|++||||+++..+++. .++..|
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~ 38 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKY 38 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCC
Confidence 4588999999999999976654 444433
No 426
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=83.05 E-value=1 Score=36.99 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|.|.||+|+||+++...|+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999998764
No 427
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=83.04 E-value=1.6 Score=38.29 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=19.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHH
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTL 208 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L 208 (352)
+..+.++|+||+|+||+++.+.+
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i 41 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAI 41 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 44579999999999999998865
No 428
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.04 E-value=1.2 Score=43.12 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+-.|+|+||||+||+||.+.|...
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcc
Confidence 46789999999999999999988663
No 429
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.02 E-value=1.1 Score=39.05 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|+|.|++||||+|+.+.|....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37889999999999999998864
No 430
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.00 E-value=1.3 Score=41.62 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+|+||+||+|+.+.|....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999999999988754
No 431
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=82.99 E-value=1.1 Score=37.84 Aligned_cols=29 Identities=41% Similarity=0.826 Sum_probs=22.4
Q ss_pred EEEEcCCCCChhHHHHHHHhh-CCCCcccc
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYP 219 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~ 219 (352)
|+++|+.||||+++..++... ++..+...
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t 31 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENYIPT 31 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSSETT
T ss_pred EEEECCCCCCHHHHHHHHHhhccccccccc
Confidence 688999999999999999874 34444333
No 432
>PHA00729 NTP-binding motif containing protein
Probab=82.99 E-value=1.1 Score=42.59 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..|+|.|++|+||+++...|+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 433
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.97 E-value=1.1 Score=43.91 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhh-CCCCccccccccccccceeEEEeecCCcchhhhhc-cCC-CCCccccCChhH
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARK-DNV-AGSAGLIPSPEL 261 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~-~~~-~~~~g~~p~~~~ 261 (352)
...+-.+||+|||||||+|..++.-.- .|. +-.++..|.-+. +.+=..+|| -|| .-.-||||+-..
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiept------~G~I~i~g~~i~-----~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPT------SGEILIDGEDIS-----DLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCCC------CceEEECCeecc-----cCCHHHHHHhhhhhhhhcccCCCccH
Confidence 346789999999999999987644221 111 110111111111 111123444 577 778899998655
Q ss_pred HH
Q psy12793 262 QE 263 (352)
Q Consensus 262 ~~ 263 (352)
+|
T Consensus 93 ~e 94 (309)
T COG1125 93 AE 94 (309)
T ss_pred HH
Confidence 44
No 434
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.97 E-value=1.4 Score=41.79 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
....++|.||+|+||+++...+...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988764
No 435
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=82.95 E-value=1.3 Score=41.14 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999999887543
No 436
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.94 E-value=1.3 Score=41.44 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+|+||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 468899999999999999999998753
No 437
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=82.93 E-value=1.2 Score=40.06 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|.|++|+||+|+..++++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998864
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.93 E-value=1.3 Score=38.21 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+|++|+||+|+.+.+....+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999998876543
No 439
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=82.93 E-value=1.1 Score=38.20 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
-|+++|++||||+++.+++...
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999764
No 440
>PLN02748 tRNA dimethylallyltransferase
Probab=82.88 E-value=1.4 Score=46.21 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+++|+|+||+||||++|...|+..+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3556899999999999999999988754
No 441
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.85 E-value=1.2 Score=42.74 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34678999999999999999999887543
No 442
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=82.82 E-value=1.2 Score=44.29 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887653
No 443
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=82.80 E-value=1.1 Score=45.07 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..++|+||||+||+|+.+.|....+
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 34688999999999999999998877544
No 444
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=82.78 E-value=1.3 Score=40.67 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
.+.|+||+|+||+|+.++++...+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 5788999999999999999887554
No 445
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.76 E-value=1.3 Score=41.25 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
...+..+.|+||+|+||+|+.+.|...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346889999999999999999998754
No 446
>PF13245 AAA_19: Part of AAA domain
Probab=82.71 E-value=1.6 Score=34.19 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
.+.+||.||+|+||+++.-.++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56788899999999955444443
No 447
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.71 E-value=1.2 Score=39.49 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHhhCC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
|.|+|++||||+|+..+|+....
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999988643
No 448
>PLN02459 probable adenylate kinase
Probab=82.71 E-value=1.1 Score=43.52 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|||+||+||||+|+..+|.+.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998864
No 449
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=82.71 E-value=1.2 Score=44.72 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
..+..|+|+||+||||+|+.+.|+...|.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 45788999999999999999999987664
No 450
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=82.66 E-value=1.1 Score=40.14 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..-|+|+|++||||+++.+++....
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch
Confidence 3578889999999999999998753
No 451
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.65 E-value=1.3 Score=41.42 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
..+..+.|+||||+||+|+.+.|..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4678999999999999999998864
No 452
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=82.65 E-value=1.2 Score=40.94 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
|+..+.|+|+||-.|||+||.++|++.+-.
T Consensus 5 p~F~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 5 PFFVKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred hhhheeeeeecCcccChHHHHHHHHHHhCC
Confidence 567889999999999999999999987655
No 453
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.65 E-value=1.3 Score=42.40 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999998876543
No 454
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.64 E-value=1.3 Score=41.25 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+|+||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 467899999999999999999888754
No 455
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.63 E-value=1.3 Score=42.10 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999998877543
No 456
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=82.63 E-value=1.2 Score=43.38 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|+...
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999998754
No 457
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.62 E-value=1.4 Score=41.10 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999988754
No 458
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.61 E-value=1.3 Score=41.68 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+|+||+||+|+.+.|....
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999887654
No 459
>PRK07667 uridine kinase; Provisional
Probab=82.61 E-value=1.3 Score=40.18 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.+|-|.|++||||+|+.+.|.....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677789999999999999987643
No 460
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=82.47 E-value=1.3 Score=42.35 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||+|+||+|+.+.|+...+
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34678999999999999999999987643
No 461
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.45 E-value=1.3 Score=41.77 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..++|+|+||+||+|+.+.|...
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999988764
No 462
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=82.44 E-value=1.3 Score=44.34 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..++|+||||+||+|+.+.++...
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3467899999999999999999887654
No 463
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=82.33 E-value=1.2 Score=40.85 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy12793 190 TLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 190 ~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.|.|+||+|||++|+...|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 57889999999999999998853
No 464
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=82.30 E-value=1.3 Score=44.02 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999887754
No 465
>PRK06620 hypothetical protein; Validated
Probab=82.29 E-value=1.4 Score=41.03 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
+.++|.||+|+||+++.+...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67999999999999999975543
No 466
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.28 E-value=1.4 Score=42.33 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.+....+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34678999999999999999998876543
No 467
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=82.26 E-value=1.6 Score=38.20 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
.+..|+|.|+.|+||+|+.+.+++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998864
No 468
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=82.25 E-value=1.5 Score=39.21 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
+.|.|+|++|+||+|+..+|+.....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999987543
No 469
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=82.24 E-value=1.1 Score=40.17 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHhh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
.-|+|+|++||||+++..++...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999999864
No 470
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.18 E-value=1.3 Score=42.54 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
...+..+.|+||||+||+|+.+.|...
T Consensus 62 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 62 ILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356789999999999999999988764
No 471
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=82.17 E-value=1.4 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999988754
No 472
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=82.16 E-value=1.3 Score=41.47 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.+....+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4688999999999999999998877543
No 473
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=82.14 E-value=1.2 Score=39.19 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
|+|+|++||||++|..+++...
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~ 24 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR 24 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7889999999999999998743
No 474
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=82.11 E-value=1.2 Score=37.60 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+++|++||||+++.++|...
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 688999999999999999864
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=82.09 E-value=1.4 Score=42.69 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
...+..+-|+||+|+||+|+.+.++.
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34568999999999999999998876
No 476
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=82.08 E-value=1.3 Score=44.52 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999887653
No 477
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=82.05 E-value=1.2 Score=42.04 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDK 215 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~ 215 (352)
.+..|+++|+.||||+|+...|+...|..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc
Confidence 47899999999999999999999987765
No 478
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=82.03 E-value=1.3 Score=44.33 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.++...
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3467899999999999999999887754
No 479
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.00 E-value=1.4 Score=42.11 Aligned_cols=27 Identities=11% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+|+||+||+|+.+.|....
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 480
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=81.98 E-value=1.5 Score=39.90 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHh
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
+..|.|.|+.||||+|+.+.|.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~ 24 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE 24 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
No 481
>PRK08727 hypothetical protein; Validated
Probab=81.97 E-value=1.4 Score=41.30 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHh
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
.+|+|.||+|+||+++...+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998744
No 482
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=81.96 E-value=1.3 Score=40.19 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChhHHHHHHH
Q psy12793 189 KTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 189 r~iVL~GPsG~gk~tl~~~L~ 209 (352)
+.++|.||+|+||+|+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999876
No 483
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=81.91 E-value=1.3 Score=38.19 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.++++..
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999853
No 484
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=81.90 E-value=1.5 Score=37.04 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.8
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCC
Q psy12793 191 LVLLGAHGVGRRHIKNTLINKFPD 214 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~~p~ 214 (352)
|+|+|++||||+++.+++....+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~ 25 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVV 25 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Confidence 688999999999999999886543
No 485
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=81.88 E-value=1.4 Score=44.10 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.+....
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999888754
No 486
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=81.82 E-value=1.4 Score=44.13 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.+....
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999887754
No 487
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.78 E-value=1.6 Score=41.82 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 188 RKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 188 ~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
.+.++|.||+|+||+++...+.++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999988654
No 488
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=81.78 E-value=1.4 Score=43.06 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|+...
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998753
No 489
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.67 E-value=1.5 Score=42.16 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|+...
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 457899999999999999999988764
No 490
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=81.67 E-value=1.3 Score=38.05 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++||||+++.+++...
T Consensus 5 i~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 778999999999999999764
No 491
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.64 E-value=1.5 Score=42.06 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999887653
No 492
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=81.64 E-value=1.4 Score=43.14 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLI 209 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~ 209 (352)
...+.|+|+|++||||+|+.+.|.
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH
Confidence 345789999999999999999885
No 493
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=81.61 E-value=1.4 Score=43.82 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
...+..+.|+||||+||+|+.+.|....
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999999998754
No 494
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.61 E-value=1.5 Score=41.91 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~ 211 (352)
..+..+.|+||||+||+|+.+.|...
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999988754
No 495
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=81.56 E-value=1.2 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHh
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTLIN 210 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L~~ 210 (352)
.+++|+|+||+|+||++|...|..
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHH
Confidence 568999999999999999998866
No 496
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=81.55 E-value=1.5 Score=39.95 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHH
Q psy12793 187 KRKTLVLLGAHGVGRRHIKNTL 208 (352)
Q Consensus 187 ~~r~iVL~GPsG~gk~tl~~~L 208 (352)
...+.+|+||+|+||+++.+.+
T Consensus 23 ~~~~~~i~G~NGsGKS~ileAi 44 (220)
T PF02463_consen 23 SPGLNVIVGPNGSGKSNILEAI 44 (220)
T ss_dssp TSSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999988
No 497
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.54 E-value=1.5 Score=41.91 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
..+..+.|+||||+||+|+.+.|....+
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999987543
No 498
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=81.54 E-value=1.5 Score=42.47 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 213 (352)
Q Consensus 185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p 213 (352)
...+..+.|+||||+||+|+.+.|....+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999998887543
No 499
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.54 E-value=1.5 Score=41.92 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793 186 FKRKTLVLLGAHGVGRRHIKNTLINKF 212 (352)
Q Consensus 186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~ 212 (352)
..+..+.|+||||+||+|+.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999998754
No 500
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=81.54 E-value=1.3 Score=40.08 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy12793 191 LVLLGAHGVGRRHIKNTLINK 211 (352)
Q Consensus 191 iVL~GPsG~gk~tl~~~L~~~ 211 (352)
|+|+|++|+||+|+.+.|...
T Consensus 4 I~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999873
Done!