RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12793
(352 letters)
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 159 bits (403), Expect = 2e-46
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 28/159 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLIP 123
++RA F+Y+ D ++F+ GD+L +I D WWQAR+ D+ G IP
Sbjct: 3 YIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60
Query: 124 SPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL 183
S E R +L + + + + +++YE V ++
Sbjct: 61 SKRRVERREW--------------------SRLKAKDWGSSSGSQGREDSVLSYETVTQM 100
Query: 184 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
+ +++LG + + L+++FPDK+ VP
Sbjct: 101 EVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH 136
Score = 90.6 bits (225), Expect = 5e-21
Identities = 35/144 (24%), Positives = 49/144 (34%), Gaps = 43/144 (29%)
Query: 231 FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTA----------CSTIDKTKHE 277
+I D WWQAR+ D+ G IPS E R S +
Sbjct: 31 LHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDS 90
Query: 278 QGIY-----------------------------SSFSLPFSVYRRDTTRSPRSDEENGRA 308
Y S F F TTR R E +GR
Sbjct: 91 VLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRD 150
Query: 309 YYFIS-HDEMMSDIAANQYLEYGK 331
Y+F+S ++M DI A++++E G+
Sbjct: 151 YHFVSSREKMEKDIQAHKFIEAGQ 174
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 148 bits (375), Expect = 2e-42
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGL 121
++VRA F+Y+P DD +P G+ F+ GDIL + + D WWQAR+ DN G+
Sbjct: 5 SLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGI 62
Query: 122 IPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVV 181
+PS E + A+ +V + ++++YE V
Sbjct: 63 VPSKRRWERK-----------------------------MRARDRSVKSEENVLSYEAVQ 93
Query: 182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
+L + +++LG + I + LI+++PDK+ VP
Sbjct: 94 RLSINYTRPVIILGP---LKDRINDDLISEYPDKFGSCVP 130
Score = 91.0 bits (226), Expect = 3e-21
Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 34/135 (25%)
Query: 231 FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ-GIYSSFSL 286
+ + D WWQAR+ DN G++PS E + E Y +
Sbjct: 35 LHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRSVKSEENVLSYEAVQR 94
Query: 287 PFSVYRR-----------------------------DTTRSPRSDEENGRAYYFISHDEM 317
Y R TTR R E +GR Y+F+S E
Sbjct: 95 LSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQ 154
Query: 318 M-SDIAANQYLEYGK 331
M DI + ++E G+
Sbjct: 155 MERDIQNHLFIEAGQ 169
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 125 bits (314), Expect = 2e-33
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 22/160 (13%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VR +Y+ +D +P I+F+ D L + K +++WW R G IPS
Sbjct: 38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLP 184
P E + + K K D+V
Sbjct: 98 PVKLENMRLQHEQRAKEF---------KLHSKEKRMPFFKKTEHTPPYDVVPS------- 141
Query: 185 SFKRKTLVLLGAHGVGRR---HIKNTLINKFPDKYAYPVP 221
+ +VL+G G ++ L + ++ +
Sbjct: 142 ---MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIS 178
Score = 59.5 bits (143), Expect = 4e-10
Identities = 13/138 (9%), Positives = 28/138 (20%), Gaps = 37/138 (26%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSV 290
+ K +++WW R G IPSP E + + F
Sbjct: 70 LHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFFKK 129
Query: 291 YRRDTTRSPRSDEENG-------------------------------------RAYYFIS 313
A ++
Sbjct: 130 TEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLA 189
Query: 314 HDEMMSDIAANQYLEYGK 331
++++ + + +E
Sbjct: 190 KRSVLNNPSKHAIIERSN 207
Score = 31.3 bits (70), Expect = 0.44
Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 5/109 (4%)
Query: 225 TVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSF 284
+ S ++ + ++ P L+ +
Sbjct: 116 KLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEG 175
Query: 285 SLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSI 333
+ + D + + RS N + I S +A E I
Sbjct: 176 RISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLA-----EVQSEI 219
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 111 bits (277), Expect = 6e-27
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGL 121
++RA F+Y+ D ++F+ GD+L +I D WWQAR+ D+ G
Sbjct: 427 GFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 484
Query: 122 IPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVV 181
IPS E R + R K + + + + +++YE V
Sbjct: 485 IPSKRRVERRE-----------------WSRLKAK---DWGSSSGSQGREDSVLSYETVT 524
Query: 182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
++ + +++LG + + L+++FPDK+ VP
Sbjct: 525 QMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH 562
Score = 76.5 bits (187), Expect = 2e-15
Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 43/145 (29%)
Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTA----------CSTIDKTKH 276
+ +I D WWQAR+ D+ G IPS E R S +
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGRED 515
Query: 277 EQGIY-----------------------------SSFSLPFSVYRRDTTRSPRSDEENGR 307
Y S F F TTR R E +GR
Sbjct: 516 SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGR 575
Query: 308 AYYFISHDEMM-SDIAANQYLEYGK 331
Y+F+S E M DI A++++E G+
Sbjct: 576 DYHFVSSREKMEKDIRAHKFIEAGQ 600
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 102 bits (254), Expect = 6e-25
Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 37/185 (20%)
Query: 60 IGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN---------WWQA 110
+GD ++R F P +G+ F GD+ ++ W A
Sbjct: 1 MGDSF--YIRTHFELEP-------SPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLA 51
Query: 111 R---KDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK----KKLYKDKYLA 163
+D G+IP+ E + + S +L + A
Sbjct: 52 VRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGA 111
Query: 164 KHNAVFDQLDLVTYEEVVKLPSFKRKTL---------VLLGAHGVGRRHIKNTLINKFPD 214
K + DL + P ++R L V+LG L + PD
Sbjct: 112 KKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPV---ADIAMQKLTAEMPD 168
Query: 215 KYAYP 219
++
Sbjct: 169 QFEIA 173
Score = 37.5 bits (86), Expect = 0.005
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 14/91 (15%)
Query: 231 FQIISKDDHN---------WWQAR---KDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ 278
F ++ W A +D G+IP+ E + +
Sbjct: 29 FHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVG 88
Query: 279 GIYSS--FSLPFSVYRRDTTRSPRSDEENGR 307
S+ + R R + + R
Sbjct: 89 PGSSAGSNARAEFWRLRGLRRGAKKTTQRSR 119
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 93.8 bits (232), Expect = 2e-21
Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 20/171 (11%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS---KDDHNWWQARK---DNVAGS 118
++R F Y G++F G++ +++ W A + ++
Sbjct: 98 SFYIRTHFEYEKESPY-------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVE 150
Query: 119 AGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHN----AVFDQLDL 174
G+IP+ E + + + + L K A Q
Sbjct: 151 RGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKF 210
Query: 175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFIT 225
YE VV + + + + G + L + PD Y +
Sbjct: 211 PAYERVVLREAGFLRPVTIFGP---IADVAREKLAREEPDIYQIAKSEPRD 258
Score = 44.5 bits (104), Expect = 3e-05
Identities = 16/143 (11%), Positives = 32/143 (22%), Gaps = 15/143 (10%)
Query: 175 VTYEEVVKLPSFKRKTLVLLGAHG---------VGRRHIKNTLINKFPDKYAYPVPQFIT 225
+ EE V K + V + I +
Sbjct: 58 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 117
Query: 226 VCSVMFQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQG 279
+F+++ W A + ++ G+IP+ E +
Sbjct: 118 NKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGD 177
Query: 280 IYSSFSLPFSVYRRDTTRSPRSD 302
+ + R R D
Sbjct: 178 RADFWRFRGLRSSKRNLRKSRED 200
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 84.9 bits (209), Expect = 2e-18
Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 20/171 (11%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS---KDDHNWWQARK---DNVAGS 118
++R F Y G++F G++ +++ W A + ++
Sbjct: 106 SFYIRTHFEYEKESPY-------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVE 158
Query: 119 AGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHN----AVFDQLDL 174
G+IP+ E + + + + L K A Q
Sbjct: 159 RGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKF 218
Query: 175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFIT 225
YE VV + + + + G + L + PD Y +
Sbjct: 219 PAYERVVLREAGFLRPVTIFGP---IADVAREKLAREEPDIYQIAKSEPRD 266
Score = 42.5 bits (99), Expect = 1e-04
Identities = 16/147 (10%), Positives = 35/147 (23%), Gaps = 17/147 (11%)
Query: 172 LDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF-------- 223
+ EE V K + ++ + ++ Y F
Sbjct: 63 FTNIIREEAVLFLLDLPKGEEVTILA-QKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY 121
Query: 224 --ITVCSVMFQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTK 275
+F+++ W A + ++ G+IP+ E +
Sbjct: 122 GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKT 181
Query: 276 HEQGIYSSFSLPFSVYRRDTTRSPRSD 302
+ + R R D
Sbjct: 182 AGGDRADFWRFRGLRSSKRNLRKSRED 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 69.4 bits (171), Expect = 2e-14
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
TTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG
Sbjct: 40 TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGS 76
Score = 58.6 bits (143), Expect = 1e-10
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
S RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 68.4 bits (168), Expect = 7e-14
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
TTR PR EE+G+ Y+FIS +EM +I+AN++LE+G
Sbjct: 54 TTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGS 90
Score = 56.8 bits (138), Expect = 9e-10
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 177 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
L RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP
Sbjct: 8 SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 52
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 56.1 bits (136), Expect = 8e-11
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+VRA F++N D++ +P F+ GDIL+I K + WW A G G+IP
Sbjct: 5 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPV 53
Score = 35.3 bits (82), Expect = 0.002
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+I K + WW A G G+IP
Sbjct: 29 RIRDKPEEQWWNAEDSE--GKRGMIPV 53
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 56.1 bits (136), Expect = 8e-11
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 19/73 (26%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS- 124
V A +++ DL + G I+ K+D +WW+AR + GS G IPS
Sbjct: 4 IVVAMYDFQATEAHDL--------RLERGQEYIILEKNDLHWWRAR--DKYGSEGYIPSN 53
Query: 125 -------PELQEW 130
L ++
Sbjct: 54 YVTGKKSNNLDQY 66
Score = 38.0 bits (89), Expect = 2e-04
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS--------PELQEW 264
+ I+ K+D +WW+AR + GS G IPS L ++
Sbjct: 27 YIILEKNDLHWWRAR--DKYGSEGYIPSNYVTGKKSNNLDQY 66
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 56.0 bits (136), Expect = 9e-11
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
+VRA F++N D++ +P F+ GDIL+I K + WW A G G+IP P
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPVPY 53
Query: 127 LQE 129
+++
Sbjct: 54 VEK 56
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
+I K + WW A G G+IP P +++
Sbjct: 27 RIRDKPEEQWWNAEDSE--GKRGMIPVPYVEK 56
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 55.8 bits (135), Expect = 2e-10
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 21/77 (27%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
+ V A ++Y +L A + + ++ + +WW+ + + G G +P
Sbjct: 19 ETVVIALYDYQTNDPQEL--------ALRRNEEYCLLDSSEIHWWRVQ--DRNGHEGYVP 68
Query: 124 SP----------ELQEW 130
S E EW
Sbjct: 69 SSYLVEKSPNNLETYEW 85
Score = 38.5 bits (90), Expect = 2e-04
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSP----------ELQEW 264
+ ++ + +WW+ + + G G +PS E EW
Sbjct: 44 YCLLDSSEIHWWRVQ--DRNGHEGYVPSSYLVEKSPNNLETYEW 85
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 57.5 bits (140), Expect = 4e-10
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR+PR+ E NG+ Y F+S DE S I N+++E+
Sbjct: 36 TTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEW 70
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 54.2 bits (131), Expect = 5e-10
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y P+ +DL + GD I+ + + WW+AR N G G IPS
Sbjct: 11 VVALYDYMPMNANDL--------QLRKGDEYFILEESNLPWWRARDKN--GQEGYIPS 58
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ I+ + + WW+AR N G G IPS
Sbjct: 33 YFILEESNLPWWRARDKN--GQEGYIPS 58
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 57.5 bits (140), Expect = 5e-10
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR+PR EE+G+ YYF++ + M DIAA ++E+
Sbjct: 39 TTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEH 73
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 57.2 bits (139), Expect = 7e-10
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR+ R E NG YYF+ D+ + Q+LE+
Sbjct: 47 TTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEF 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 57.2 bits (139), Expect = 8e-10
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR R E+ G YYFI + +LEY
Sbjct: 58 TTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEY 92
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 53.0 bits (128), Expect = 1e-09
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
A ++ DL F+ G+IL +I K WW A+ + G+ GL+P
Sbjct: 13 YIAVGDFTAQQVGDL--------TFKKGEILLVIEKKPDGWWIAK--DAKGNEGLVPRTY 62
Query: 127 LQE 129
L+
Sbjct: 63 LEP 65
Score = 36.5 bits (85), Expect = 8e-04
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
+I K WW A+ + G+ GL+P L+
Sbjct: 36 LVIEKKPDGWWIAK--DAKGNEGLVPRTYLEP 65
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 56.0 bits (136), Expect = 2e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR R E +G Y+F + D + I +Q++EY
Sbjct: 41 TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEY 75
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 52.4 bits (126), Expect = 2e-09
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
V A ++Y +L A + + ++ + +WW+ + + G G PS
Sbjct: 22 LVIALYDYQTNDPQEL--------ALRCDEEYYLLDSSEIHWWRVQ--DKNGHEGYAPSS 71
Query: 126 ELQE 129
L E
Sbjct: 72 YLVE 75
Score = 37.0 bits (86), Expect = 7e-04
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
+ ++ + +WW+ + + G G PS L E
Sbjct: 45 YYLLDSSEIHWWRVQ--DKNGHEGYAPSSYLVE 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 55.7 bits (135), Expect = 2e-09
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR+PR E +G Y+FI I + LE+
Sbjct: 54 TTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEW 88
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 55.6 bits (135), Expect = 2e-09
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR PR E++G YYF S + I + LEY
Sbjct: 43 TTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEY 77
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 52.5 bits (126), Expect = 3e-09
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIP 123
V+ + ++ + +++L F+ G+ +++I K +D WW+ + N G GL+P
Sbjct: 19 VVQTLYPFSSVTEEEL--------NFEKGETMEVIEKPENDPEWWKCK--NARGQVGLVP 68
Query: 124 S 124
Sbjct: 69 K 69
Score = 34.4 bits (79), Expect = 0.007
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 231 FQIISK--DDHNWWQARKDNVAGSAGLIPS 258
++I K +D WW+ + N G GL+P
Sbjct: 42 MEVIEKPENDPEWWKCK--NARGQVGLVPK 69
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 56.0 bits (134), Expect = 5e-09
Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 42/192 (21%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
V F + + + F+ G+ L+I+SK + +WW+AR N G+ GL+P+
Sbjct: 149 VVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPANY 199
Query: 127 LQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSF 186
+Q + Q + G + + + N +
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259
Query: 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARK 246
L Q + V K + ++A
Sbjct: 260 AYDPTQL-----------------------RVKKGQTVLV-------TQKMSNGMYKAE- 288
Query: 247 DNVAGSAGLIPS 258
+ G G +P
Sbjct: 289 --LDGQIGSVPH 298
Score = 37.9 bits (87), Expect = 0.003
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVY 291
+I+SK + +WW+AR N G+ GL+P+ +Q + Q S +
Sbjct: 173 EILSKTNQDWWEAR--NALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERF 230
Query: 292 RRDTTRSPRSD 302
+T S +
Sbjct: 231 SSASTSSDNIE 241
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 51.1 bits (123), Expect = 6e-09
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A ++Y + +DDL +F G+ QI++ + +WW+AR G G IPS
Sbjct: 17 LFVALYDYEAITEDDL--------SFHKGEKFQILNSSEGDWWEAR-SLTTGETGYIPS 66
Score = 33.8 bits (78), Expect = 0.009
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 39 KFQILNSSEGDWWEAR-SLTTGETGYIPS 66
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 51.1 bits (123), Expect = 6e-09
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIP 123
V+ + ++ + +++L F+ G+ +++I K +D WW+ + G GL+P
Sbjct: 8 VVQTLYPFSSVTEEEL--------NFEKGETMEVIEKPENDPEWWKCKNAR--GQVGLVP 57
Query: 124 S 124
Sbjct: 58 K 58
Score = 33.8 bits (78), Expect = 0.009
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 231 FQIISK--DDHNWWQARKDNVAGSAGLIPS 258
++I K +D WW+ + G GL+P
Sbjct: 31 MEVIEKPENDPEWWKCKNAR--GQVGLVPK 58
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 50.8 bits (122), Expect = 8e-09
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGL 121
F RA +++ P + + +A + GD++ I+SK D +WW+ R N G+ G
Sbjct: 9 FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 60
Query: 122 IPS 124
IP
Sbjct: 61 IPY 63
Score = 30.8 bits (70), Expect = 0.087
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 233 IISKDDH-----NWWQARKDNVAGSAGLIPS 258
I+SK D +WW+ R N G+ G IP
Sbjct: 35 ILSKKDPLGRDSDWWKVRTKN--GNIGYIPY 63
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 54.1 bits (131), Expect = 8e-09
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR PR E +G Y+F++HDE I+ + +LE+
Sbjct: 52 TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEH 86
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 50.9 bits (122), Expect = 9e-09
Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSP 125
+ + +L AF+ GD++ I+ ++ +W++ + + +G GL+ +
Sbjct: 20 CITKCEHTRPKPGEL--------AFRKGDVVTILEACENKSWYRVK-HHTSGQEGLLAAG 70
Query: 126 ELQE 129
L+E
Sbjct: 71 ALRE 74
Score = 35.1 bits (81), Expect = 0.004
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 230 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE 263
+ I+ ++ +W++ + + +G GL+ + L+E
Sbjct: 41 VVTILEACENKSWYRVK-HHTSGQEGLLAAGALRE 74
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 50.8 bits (122), Expect = 9e-09
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A ++YN DL +F G+ QI+ +WW+AR G G IPS
Sbjct: 8 LFVALYDYNATRWTDL--------SFHKGEKFQILEFGPGDWWEAR-SLTTGETGYIPS 57
Score = 32.7 bits (75), Expect = 0.029
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI+ +WW+AR G G IPS
Sbjct: 30 KFQILEFGPGDWWEAR-SLTTGETGYIPS 57
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 52.2 bits (125), Expect = 9e-09
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+F + + DD + G+ L I + D+ W+ A+ N G GL+P
Sbjct: 3 PLFAVTLYEFKAERDD-------ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPV 55
Score = 38.0 bits (88), Expect = 8e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
I + D+ W+ A+ N G GL+P
Sbjct: 29 SICAHYDYEWFIAKPINRLGGPGLVPV 55
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 51.4 bits (123), Expect = 9e-09
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGL 121
F RA +++ P + + +A + GD++ I+SK D +WW+ R N G+ G
Sbjct: 16 FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 67
Query: 122 IPSPELQE 129
IP ++
Sbjct: 68 IPYNYIEI 75
Score = 31.3 bits (71), Expect = 0.089
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 233 IISKDDH-----NWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFS 285
I+SK D +WW+ R N G+ G IP ++ I + K + +
Sbjct: 42 ILSKKDPLGRDSDWWKVRTKN--GNIGYIPYNYIEI-------IKRRKKIEHVDDETR 90
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 53.7 bits (130), Expect = 1e-08
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR R ++ G Y+FI + + +LE+
Sbjct: 41 TTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH 75
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 50.3 bits (121), Expect = 1e-08
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
A++N++ + DL F GD+L I++ D NW++A+ N G G+IP+
Sbjct: 14 CIAKYNFHGTAEQDL--------PFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPA 62
Score = 33.0 bits (76), Expect = 0.014
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 232 QIISK-DDHNWWQARKDNVAGSAGLIPS 258
I++ D NW++A+ N G G+IP+
Sbjct: 37 TIVAVTKDPNWYKAK--NKVGREGIIPA 62
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 54.1 bits (131), Expect = 1e-08
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
TTR+ R E+ G+ YYF+ +E + + + +E+
Sbjct: 62 TTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEH 96
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 50.5 bits (121), Expect = 1e-08
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGL 121
F RA +++ P + + +A + GD++ I+SK D +WW+ R N G+ G
Sbjct: 16 FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 67
Query: 122 IPS 124
IP
Sbjct: 68 IPY 70
Score = 30.8 bits (70), Expect = 0.11
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 233 IISKDDH-----NWWQARKDNVAGSAGLIPS 258
I+SK D +WW+ R N G+ G IP
Sbjct: 42 ILSKKDPLGRDSDWWKVRTKN--GNIGYIPY 70
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 50.1 bits (120), Expect = 2e-08
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 15/65 (23%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR------KDNVAGSA 119
+ A F+Y +DL +F+ GD LQ++ WW AR
Sbjct: 9 YFVALFDYQARTAEDL--------SFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQ 60
Query: 120 GLIPS 124
G IPS
Sbjct: 61 GYIPS 65
Score = 32.8 bits (75), Expect = 0.024
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 231 FQIISKDDHNWWQAR------KDNVAGSAGLIPS 258
Q++ WW AR G IPS
Sbjct: 32 LQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 50.0 bits (120), Expect = 2e-08
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A ++Y +DDL +F G+ QI++ + +WW+AR G G IPS
Sbjct: 7 LFEALYDYEARTEDDL--------SFHKGEKFQILNSSEGDWWEAR-SLTTGETGYIPS 56
Score = 32.7 bits (75), Expect = 0.026
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEAR-SLTTGETGYIPS 56
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 49.2 bits (118), Expect = 2e-08
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A +Y + L +F G+ + I+ + +WW AG G IP+
Sbjct: 10 FVAIADYAATDETQL--------SFLRGEKILILRQTTADWWWGE---RAGCCGYIPA 56
Score = 31.5 bits (72), Expect = 0.048
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
I+ + +WW AG G IP+
Sbjct: 33 LILRQTTADWWWGE---RAGCCGYIPA 56
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 49.3 bits (118), Expect = 2e-08
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-----GSAG 120
V A ++Y ++ + GDIL +++ + +WW+ G
Sbjct: 3 LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQG 54
Query: 121 LIPS 124
+P+
Sbjct: 55 FVPA 58
Score = 31.2 bits (71), Expect = 0.062
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 231 FQIISKDDHNWWQARKDNVA-----GSAGLIPS 258
+++ + +WW+ G +P+
Sbjct: 26 LTLLNSTNKDWWKVEVKITVNGKTYERQGFVPA 58
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 49.3 bits (118), Expect = 3e-08
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
+ A +Y+P D + + +A + GD++ + DD ++ G GL+P+
Sbjct: 10 MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG---GHRGLVPA 64
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 50.2 bits (120), Expect = 4e-08
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 18/73 (24%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS- 124
A ++Y +DL +F+ G+ QII+ + +WW+AR G +G IPS
Sbjct: 29 IFVALYDYEARTTEDL--------SFKKGERFQIINNTEGDWWEARS-IATGKSGYIPSN 79
Query: 125 -------PELQEW 130
+ +EW
Sbjct: 80 YVVPADSIQAEEW 92
Score = 34.0 bits (78), Expect = 0.014
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS--------PELQEW 264
FQII+ + +WW+AR G +G IPS + +EW
Sbjct: 51 RFQIINNTEGDWWEARS-IATGKSGYIPSNYVVPADSIQAEEW 92
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 49.0 bits (117), Expect = 4e-08
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR-KDNVAGSAGLIPS 124
+ +Y ++ FQ G ++++ ++ + WW + D V G +PS
Sbjct: 13 YVSIADYEGDEETA--------GFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPS 62
Score = 32.4 bits (74), Expect = 0.025
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 230 MFQIISKDDHNWWQAR-KDNVAGSAGLIPS 258
+++ ++ + WW + D V G +PS
Sbjct: 33 SMEVLERNPNGWWYCQILDGVKPFKGWVPS 62
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 48.3 bits (116), Expect = 4e-08
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA + + P D + F+ GDI+ I D NWW+ G GLIPS
Sbjct: 6 FRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT---SKGRTGLIPS 52
Score = 29.0 bits (66), Expect = 0.28
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
I D NWW+ G GLIPS
Sbjct: 29 YITDMSDTNWWKGT---SKGRTGLIPS 52
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 48.5 bits (116), Expect = 5e-08
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+A + Y+ DDD I+F+ +ILQ+ + WW+AR+ N G G+IPS
Sbjct: 6 YKAKALYPYDADDDD-----AYEISFEQNEILQVSDIEG-RWWKARRAN--GETGIIPS 56
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 48.9 bits (117), Expect = 5e-08
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y ++ + GDIL +++ + +WW+ + G +P+
Sbjct: 4 LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 51
Score = 31.6 bits (72), Expect = 0.068
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ + G +P+
Sbjct: 27 LTLLNSTNKDWWKVEVN---DRQGFVPA 51
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 48.4 bits (116), Expect = 5e-08
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A Y+ ++L Q G+ ++++ K W + + G G+ PS
Sbjct: 10 FVALHTYSAHRPEEL--------DLQKGEGIRVLGKYQDGWLKGLS-LLTGRTGIFPS 58
Score = 29.1 bits (66), Expect = 0.33
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ K W + + G G+ PS
Sbjct: 31 GIRVLGKYQDGWLKGLS-LLTGRTGIFPS 58
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 49.4 bits (118), Expect = 5e-08
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 66 IFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++ +++ D+L +G+ L I + + W+ A+ G GL+P
Sbjct: 6 LYAIVLYDFKAEKADEL--------TTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPV 57
Score = 35.9 bits (83), Expect = 0.003
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I + + W+ A+ G GL+P
Sbjct: 32 ICAHHNCEWFIAKPIGRLGGPGLVPV 57
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 48.5 bits (116), Expect = 6e-08
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y ++ + GDIL +++ + +WW+ + G +P+
Sbjct: 19 LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 66
Score = 30.8 bits (70), Expect = 0.11
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ + G +P+
Sbjct: 43 TLLNSTNKDWWKVEVN---DRQGFVPA 66
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 48.1 bits (115), Expect = 6e-08
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y D + GDI+++ KD+ +WW G G P+
Sbjct: 9 VVALYDYTANRSD-------ELTIHRGDIIRVFFKDNEDWWYGSIGK--GQEGYFPA 56
Score = 31.9 bits (73), Expect = 0.036
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++ KD+ +WW G G P+
Sbjct: 32 RVFFKDNEDWWYGSIGK--GQEGYFPA 56
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 48.0 bits (115), Expect = 7e-08
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
++ V A+++Y D +L + + L ++ WW+ R N A G +P
Sbjct: 4 EVIVIAKWDYTAQQDQEL--------DIKKNERLWLLDDSKT-WWRVR--NAANRTGYVP 52
Query: 124 SPELQE 129
S ++
Sbjct: 53 SNYVER 58
Score = 32.2 bits (74), Expect = 0.030
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 234 ISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
+ D WW+ R N A G +PS ++
Sbjct: 31 LLDDSKTWWRVR--NAANRTGYVPSNYVER 58
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 48.1 bits (115), Expect = 7e-08
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V+ ++ +DD + F G+++ + ++D WW + G+ P
Sbjct: 13 VKTIYDCQADNDD-------ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62
Score = 29.6 bits (67), Expect = 0.27
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+ ++D WW + G+ P
Sbjct: 37 VTGEEDQEWWIGHIEGQPERKGVFPV 62
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 48.1 bits (115), Expect = 8e-08
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y ++ + GDIL +++ + +WW+ V G +P+
Sbjct: 7 LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVE---VNDRQGFVPA 54
Score = 30.4 bits (69), Expect = 0.15
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ V G +P+
Sbjct: 31 TLLNSTNKDWWKVE---VNDRQGFVPA 54
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 48.1 bits (115), Expect = 8e-08
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
++ V A+F+Y + +L + + L ++ WW+ R N G +P
Sbjct: 7 EVVVVAKFDYVAQQEQEL--------DIKKNERLWLLDDSKS-WWRVR--NSMNKTGFVP 55
Query: 124 S 124
S
Sbjct: 56 S 56
Score = 31.9 bits (73), Expect = 0.034
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
++ WW+ R N G +PS
Sbjct: 32 LWLLDDSKS-WWRVR--NSMNKTGFVPS 56
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 48.7 bits (116), Expect = 8e-08
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 68 VRAQFNYNPLDDDLIPCAQAG-IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A F+Y+PL P A + F+ G I+++ D + + + GLIP
Sbjct: 20 FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC--ARLGLIPC 75
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 47.6 bits (114), Expect = 9e-08
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q+ VRA+FN+ ++D ++F GD++ + ++ WW+ G G PS
Sbjct: 6 QLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT---HNGRTGWFPS 55
Score = 26.0 bits (58), Expect = 3.9
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+ ++ WW+ G G PS
Sbjct: 32 HVTRVEEGGWWEGT---HNGRTGWFPS 55
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 50.6 bits (120), Expect = 9e-08
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V F + + + F+ G+ L+I+SK + +WW+AR N G+ GL+P+
Sbjct: 118 IEVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPA 168
Query: 125 P--ELQ 128
++Q
Sbjct: 169 NYVQIQ 174
Score = 36.3 bits (83), Expect = 0.006
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSP--ELQ 262
+I+SK + +WW+AR N G+ GL+P+ ++Q
Sbjct: 143 LEILSKTNQDWWEAR--NALGTTGLVPANYVQIQ 174
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 47.8 bits (114), Expect = 1e-07
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
+ A ++Y+P + +A + F GDI+ + + D+ ++ + G GL+PS
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELN---GQKGLVPS 64
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 47.2 bits (113), Expect = 1e-07
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
I V+A ++Y+ D + F+ GD + + KD WW+ + G G +P+
Sbjct: 3 GIQVKALYDYDAQTGD-------ELTFKEGDTIIVHQKDPAGWWEGELN---GKRGWVPA 52
Score = 27.9 bits (63), Expect = 0.77
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+ KD WW+ + G G +P+
Sbjct: 30 VHQKDPAGWWEGELN---GKRGWVPA 52
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 47.7 bits (114), Expect = 1e-07
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPS 124
+ ++Y D + + ++L++I D +W +AR N G G +P
Sbjct: 16 CKVVYSYKASQPDELT-------IEEHEVLEVIEDGDMEDWVKAR--NKVGQVGYVPE 64
Score = 33.5 bits (77), Expect = 0.011
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 231 FQIISKDD-HNWWQARKDNVAGSAGLIPS 258
++I D +W +AR N G G +P
Sbjct: 38 LEVIEDGDMEDWVKAR--NKVGQVGYVPE 64
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 47.3 bits (113), Expect = 1e-07
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
NY ++ ++ Q G+++ +I K++ WW G +P+
Sbjct: 11 YVVVSNYKKQENS-------ELSLQAGEVVDVIEKNESGWWFVSTS---EEQGWVPA 57
Score = 30.7 bits (70), Expect = 0.088
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+I K++ WW G +P+
Sbjct: 34 DVIEKNESGWWFVSTS---EEQGWVPA 57
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 47.3 bits (113), Expect = 1e-07
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Y D I F+ G +++I K+ WW R G G P+
Sbjct: 11 YVTVQPYTSQSKD-------EIGFEKGVTVEVIRKNLEGWWYIRYL---GKEGWAPA 57
Score = 31.1 bits (71), Expect = 0.066
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++I K+ WW R G G P+
Sbjct: 34 EVIRKNLEGWWYIRYL---GKEGWAPA 57
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 47.3 bits (113), Expect = 1e-07
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
I A+F+Y +L +F+ G L + + +WW+ R G GLIP
Sbjct: 9 PIEAIAKFDYVGRTAREL--------SFKKGASLLLYQRASDDWWEGR---HNGIDGLIP 57
Query: 124 S 124
Sbjct: 58 H 58
Score = 29.6 bits (67), Expect = 0.22
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+ + +WW+ R G GLIP
Sbjct: 35 LLYQRASDDWWEGR---HNGIDGLIPH 58
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 47.3 bits (113), Expect = 2e-07
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A F Y ++F+ GD+L++ + +WW+ G GLIP
Sbjct: 13 AVACFAYTGRTAQ-------ELSFRRGDVLRLHERASSDWWRGE---HNGMRGLIPH 59
Score = 29.6 bits (67), Expect = 0.31
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++ + +WW+ G GLIP
Sbjct: 36 RLHERASSDWWRGE---HNGMRGLIPH 59
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 46.8 bits (112), Expect = 2e-07
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA + + P D + F+ GDI+ I D NWW+ G GLIPS
Sbjct: 10 FRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT---SKGRTGLIPS 56
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
I D NWW+ G GLIPS
Sbjct: 32 IYITDMSDTNWWKGT---SKGRTGLIPS 56
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ RA +++ L++D + F+ G++++++ + +WW R + GL P+
Sbjct: 3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGR---LHNKLGLFPA 50
Score = 27.9 bits (63), Expect = 0.81
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
++ + +WW R + GL P+
Sbjct: 28 VLDSSNPSWWTGR---LHNKLGLFPA 50
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 46.5 bits (111), Expect = 2e-07
Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ ++++++ + ++ D+L+I+ WW+ R + G +G +P+
Sbjct: 3 YAKSKYDFVARNSS-------ELSVMKDDVLEILDDRR-QWWKVRNAS--GDSGFVPN 50
Score = 31.8 bits (73), Expect = 0.033
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 234 ISKDDHNWWQARKDNVAGSAGLIPS 258
I D WW+ R + G +G +P+
Sbjct: 28 ILDDRRQWWKVRNAS--GDSGFVPN 50
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 46.4 bits (111), Expect = 2e-07
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
FV+A F++NP + +AF+ GD++ +I+KDD NWW+ + + G+ PS
Sbjct: 4 FVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQ---LNNRRGIFPS 51
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+I+KDD NWW+ + + G+ PS
Sbjct: 28 TLINKDDPNWWEGQ---LNNRRGIFPS 51
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V ++Y +L + GDIL +++ + +WW+ + G G +P+
Sbjct: 8 LVLVLYDYQEKSPREL--------TVKKGDILTLLNSTNKDWWKIEVN---GRQGFVPA 55
Score = 30.3 bits (69), Expect = 0.13
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ + G G +P+
Sbjct: 32 TLLNSTNKDWWKIEVN---GRQGFVPA 55
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA +++ ++D+ + F+ G+++ ++ D NWWQ GL PS
Sbjct: 8 VRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGENH---RGTGLFPS 54
Score = 27.9 bits (63), Expect = 0.83
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
++ D NWWQ GL PS
Sbjct: 32 VLDDSDANWWQGENH---RGTGLFPS 54
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 46.5 bits (111), Expect = 2e-07
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q+ V+A+FN+ ++D ++ GDI+ + ++ WW+ + G G PS
Sbjct: 10 QLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGT---LNGRTGWFPS 59
Score = 26.5 bits (59), Expect = 3.7
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+ ++ WW+ + G G PS
Sbjct: 36 YVTRVEEGGWWEGT---LNGRTGWFPS 59
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 46.5 bits (111), Expect = 3e-07
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+V+ +++ ++L + ++L+++ WW+ R + +G AG +P
Sbjct: 9 YVKILYDFTARNANEL--------SVLKDEVLEVLEDGRQ-WWKLR--SRSGQAGYVPC 56
Score = 30.3 bits (69), Expect = 0.12
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ +++ WW+ R + +G AG +P
Sbjct: 31 VLEVLEDGRQ-WWKLR--SRSGQAGYVPC 56
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 46.2 bits (110), Expect = 3e-07
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+V +++ +L + + D+L+++ WW+ R + AG G +P
Sbjct: 10 WVLCNYDFQARNSSEL--------SVKQRDVLEVLDDSR-KWWKVR--DPAGQEGYVPY 57
Score = 31.1 bits (71), Expect = 0.057
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 234 ISKDDHNWWQARKDNVAGSAGLIPS 258
+ D WW+ R + AG G +P
Sbjct: 35 VLDDSRKWWKVR--DPAGQEGYVPY 57
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 46.1 bits (110), Expect = 3e-07
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A +++ P +D+ + GDI+ I K W A ++ GL+P
Sbjct: 8 AVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVA-ENESGSKTGLVPE 56
Score = 29.6 bits (67), Expect = 0.28
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I K W A ++ GL+P
Sbjct: 32 ISYKHGQGWLVA-ENESGSKTGLVPE 56
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 46.2 bits (110), Expect = 3e-07
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA +++ +D+ + F+ G+I+ ++ D NWW+ GL PS
Sbjct: 20 VRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGETH---QGIGLFPS 66
Score = 27.7 bits (62), Expect = 1.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
++ D NWW+ GL PS
Sbjct: 44 VLDDSDPNWWKGETH---QGIGLFPS 66
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 46.7 bits (111), Expect = 3e-07
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
I V A ++Y + +DL +FQ GD + ++ + WW+AR G IP
Sbjct: 25 DIIVVALYDYEAIHHEDL--------SFQKGDQMVVLEESG-EWWKAR-SLATRKEGYIP 74
Query: 124 S 124
S
Sbjct: 75 S 75
Score = 30.1 bits (68), Expect = 0.25
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
++ + WW+AR G IPS
Sbjct: 49 QMVVLEESG-EWWKAR-SLATRKEGYIPS 75
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
R F + P + + G+I+ ++ K + NW + G GL+P
Sbjct: 10 HRVLFGFVPETKE-------ELQVMPGNIVFVLKKGNDNWATVMFN---GQKGLVPC 56
Score = 27.5 bits (62), Expect = 1.3
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++ K + NW + G GL+P
Sbjct: 33 FVLKKGNDNWATVMFN---GQKGLVPC 56
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 46.2 bits (110), Expect = 3e-07
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA--GLIP 123
+++ D++L +F+ GD+ + K++ WW D G+ G +P
Sbjct: 12 KYVGLWDFKSRTDEEL--------SFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVP 63
Query: 124 S 124
Sbjct: 64 H 64
Score = 31.6 bits (72), Expect = 0.054
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 231 FQIISKDDHNWWQARKDNVAGSA--GLIPS 258
F + K++ WW D G+ G +P
Sbjct: 35 FHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 45.7 bits (109), Expect = 3e-07
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA+FN+ ++D ++F GD++ + ++ WW+ G G PS
Sbjct: 6 VVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT---HNGRTGWFPS 53
Score = 26.0 bits (58), Expect = 4.1
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+ ++ WW+ G G PS
Sbjct: 30 HVTRVEEGGWWEGT---HNGRTGWFPS 53
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 46.7 bits (111), Expect = 3e-07
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
V A+++Y D +L + + L ++ WW+ R N A G +PS
Sbjct: 33 IVIAKWDYTAQQDQEL--------DIKKNERLWLLDDSKT-WWRVR--NAANRTGYVPSN 81
Query: 126 ELQE 129
++
Sbjct: 82 YVER 85
Score = 32.5 bits (74), Expect = 0.036
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 234 ISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
+ D WW+ R N A G +PS ++
Sbjct: 58 LLDDSKTWWRVR--NAANRTGYVPSNYVER 85
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 46.6 bits (111), Expect = 3e-07
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ RA +YN D L+P F+ DI+ I KD N W + N G G P
Sbjct: 12 YARALKDYNVSDTSLLP-------FKRNDIITITFKDQENKWFMGQLN--GKEGSFPV 60
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 46.1 bits (110), Expect = 4e-07
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
++ + + +L G+ L+++ WW + N AG +G IPS
Sbjct: 10 MQVLYEFEARNPREL--------TVVQGEKLEVLDHSKR-WWLVK--NEAGRSGYIPS 56
Score = 31.1 bits (71), Expect = 0.069
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 234 ISKDDHNWWQARKDNVAGSAGLIPS 258
+ WW + N AG +G IPS
Sbjct: 34 VLDHSKRWWLVK--NEAGRSGYIPS 56
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A +++ P +D+ + GDI+ I K W A + GL+P
Sbjct: 4 AVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAE-NESGSKTGLVPE 52
Score = 28.3 bits (64), Expect = 0.53
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I K W A + GL+P
Sbjct: 28 ISYKHGQGWLVAE-NESGSKTGLVPE 52
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 46.2 bits (110), Expect = 4e-07
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+A +++ DD + + GDI+ I K + WW + G G P+
Sbjct: 7 GRLCKALYSFQARQDD-------ELNLEKGDIVIIHEKKEEGWWFGSLN---GKKGHFPA 56
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 50.0 bits (118), Expect = 4e-07
Identities = 28/170 (16%), Positives = 47/170 (27%), Gaps = 23/170 (13%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCS 148
+ F+ G+IL II K + WW AR + G G+IP P +++ + +
Sbjct: 142 LPFKKGEILVIIEKPEEQWWSARNKD--GRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYG 199
Query: 149 IFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTL 208
I + + AV + K
Sbjct: 200 IPEPAHAYAQPQTTTPLPAVSGSPGAAIT-----------PLPSTQNGPVFAKAIQKRVP 248
Query: 209 INKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258
A V + V + + W+ + G GL P
Sbjct: 249 CAYDKTALALEVGDIVKV-------TRMNINGQWEGEVN---GRKGLFPF 288
Score = 40.4 bits (93), Expect = 5e-04
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ D +A ++GDI+++ + + W+ + G GL P
Sbjct: 242 AIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEVN---GRKGLFPF 288
Score = 36.5 bits (83), Expect = 0.008
Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 4/102 (3%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSP--ELQEWRTACSTIDKTKHEQGIYSSFSLP 287
+ II K + WW AR + G G+IP P E + +
Sbjct: 149 ILVIIEKPEEQWWSARNKD--GRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHA 206
Query: 288 FSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
++ + T S S A Q
Sbjct: 207 YAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVP 248
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 45.3 bits (108), Expect = 4e-07
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+V+A F+++P +D + F+ GD + ++ D NWW+ G G+ P
Sbjct: 4 YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGA---CHGQTGMFPR 51
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 45.3 bits (108), Expect = 4e-07
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+A + Y+ D D ++F DI+ II +D WW R G GL P+
Sbjct: 8 CKALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGRLR---GKQGLFPN 54
Score = 26.8 bits (60), Expect = 2.1
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
II +D WW R G GL P+
Sbjct: 31 DIIKEDPSGWWTGRLR---GKQGLFPN 54
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 45.3 bits (108), Expect = 5e-07
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
F A+F+Y +L +F+ G L + + +WW+ R G GL+P
Sbjct: 8 FAIAKFDYVGRSAREL--------SFKKGASLLLYHRASEDWWEGR---HNGIDGLVPH 55
Score = 28.3 bits (64), Expect = 0.51
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+ + +WW+ R G GL+P
Sbjct: 32 LLYHRASEDWWEGR---HNGIDGLVPH 55
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 45.3 bits (108), Expect = 5e-07
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ F+Y P +DD + ++GDI++++ + + WW+ + G G+ PS
Sbjct: 10 CQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVLN---GKTGMFPS 56
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 45.7 bits (109), Expect = 5e-07
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA + Y P ++D + + GD + ++ + D W+ G P
Sbjct: 10 YRAMYQYRPQNED-------ELELREGDRVDVMQQCDDGWFVGV-SRRTQKFGTFPG 58
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 45.9 bits (109), Expect = 5e-07
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Y + D I+F G +Q++ K + WW R G PS
Sbjct: 11 YMTCSAYQKVQDS-------EISFPAGVEVQVLEKQESGWWYVRFG---ELEGWAPS 57
Score = 30.2 bits (68), Expect = 0.20
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
Q++ K + WW R G PS
Sbjct: 34 QVLEKQESGWWYVRFG---ELEGWAPS 57
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 45.3 bits (108), Expect = 5e-07
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V+A ++Y D + F G ++ +SK+ WW+ PS
Sbjct: 7 GRTVKALYDYKAKRSD-------ELTFCRGALIHNVSKEPGGWWKGDYGT--RIQQYFPS 57
Score = 27.2 bits (61), Expect = 1.6
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ +SK+ WW+ PS
Sbjct: 31 LIHNVSKEPGGWWKGDYGT--RIQQYFPS 57
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 45.3 bits (108), Expect = 6e-07
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
A +++ D+ L + G+ L+++ + + W +A+ G +PS
Sbjct: 7 LFVALYDFVASGDNTL--------SITKGEKLRVLGYNHNGEWCEAQTK---NGQGWVPS 55
Score = 29.9 bits (68), Expect = 0.16
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 231 FQIISKD-DHNWWQARKDNVAGSAGLIPS 258
+++ + + W +A+ G +PS
Sbjct: 30 LRVLGYNHNGEWCEAQTK---NGQGWVPS 55
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 45.3 bits (108), Expect = 6e-07
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ + F Y P ++D + ++GDI+ I + + WW + GL PS
Sbjct: 7 KRQCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGTLN---NKLGLFPS 56
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 45.0 bits (107), Expect = 6e-07
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A +Y P D DL F+ G+ L+I+ + WW+A+ G G IP
Sbjct: 8 LVIALHSYEPSHDGDL--------GFEKGEQLRILEQSGE-WWKAQ-SLTTGQEGFIPF 56
Score = 29.6 bits (67), Expect = 0.22
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+I+ + WW+A+ G G IP
Sbjct: 30 QLRILEQSGE-WWKAQ-SLTTGQEGFIPF 56
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 45.3 bits (108), Expect = 6e-07
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPS 124
A +++ + I G+ L ++ +D W + R+ G G +P+
Sbjct: 10 CVAIYHFEGSSEGTIS-------MAEGEDLSLMEEDKGDGWTRVRRKE--GGEGYVPT 58
Score = 32.2 bits (74), Expect = 0.024
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 231 FQIISKDD-HNWWQARKDNVAGSAGLIPS 258
++ +D W + R+ G G +P+
Sbjct: 32 LSLMEEDKGDGWTRVRRKE--GGEGYVPT 58
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 45.3 bits (108), Expect = 7e-07
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA ++Y + D + GDIL++I + + WW ++ G G +P
Sbjct: 11 YRALYDYTAQNPD-------ELDLSAGDILEVILEGEDGWWTVERN---GQRGFVPG 57
Score = 27.2 bits (61), Expect = 2.0
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++I + + WW ++ G G +P
Sbjct: 34 EVILEGEDGWWTVERN---GQRGFVPG 57
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 44.9 bits (107), Expect = 7e-07
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ F Y P ++D + ++GDI+ I + + WW + GL PS
Sbjct: 4 CKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGT---LNNKLGLFPS 50
Score = 25.7 bits (57), Expect = 5.1
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I + + WW + GL PS
Sbjct: 28 INEEVEEGWWSGT---LNNKLGLFPS 50
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 45.0 bits (107), Expect = 7e-07
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGS--AGLIPS 124
V AQF Y +DDL F+ + + S +D W+ + G G+ P
Sbjct: 10 VVAQFPYKSDYEDDL--------NFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPK 61
Score = 26.5 bits (59), Expect = 3.0
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 233 IISKDDHNWWQARKDNVAGS--AGLIPS 258
+ S +D W+ + G G+ P
Sbjct: 34 VTSVEDAEWYFGEYQDSNGDVIEGIFPK 61
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 48.5 bits (115), Expect = 7e-07
Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 48/222 (21%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSP 125
A++++ DD+L +F+ GDIL++++++ D NW++A + G G IP
Sbjct: 3 AIAKYDFKATADDEL--------SFKRGDILKVLNEECDQNWYKAELN---GKDGFIPKN 51
Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKK--LYKDKYLAKHNAVFDQLDLVTYEEV--- 180
++ + + R L ++ A + L + +V
Sbjct: 52 YIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD---FSLSVKFGNDVQHF 108
Query: 181 ---------VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITV----- 226
L K +L L + +N I + P ++
Sbjct: 109 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFD 168
Query: 227 ----------CSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258
++ D NWW+ G G+ P
Sbjct: 169 PQEDGELGFRRGDFIHVMDNSDPNWWKGA---CHGQTGMFPR 207
Score = 40.4 bits (94), Expect = 3e-04
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+V+A F+++P +D + F+ GD + ++ D NWW+ G G+ P
Sbjct: 158 PTYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGA---CHGQTGMFPR 207
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 45.0 bits (107), Expect = 7e-07
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A + Y+ + DDL +F+ G+ ++++ + WW+A+ + G IPS
Sbjct: 9 IVVALYPYDGIHPDDL--------SFKKGEKMKVLEEHG-EWWKAK-SLLTKKEGFIPS 57
Score = 29.5 bits (67), Expect = 0.22
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + WW+A+ + G IPS
Sbjct: 31 KMKVLEEHG-EWWKAK-SLLTKKEGFIPS 57
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 45.9 bits (109), Expect = 8e-07
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y ++D ++F G ++ +++KDD +WWQ + G GL PS
Sbjct: 37 VIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEIN---GVTGLFPS 83
Score = 27.8 bits (62), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+++KDD +WWQ + G GL PS
Sbjct: 60 NVMNKDDPDWWQGEIN---GVTGLFPS 83
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 44.9 bits (107), Expect = 8e-07
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A + + P +++ + + GDI+ ++ + +WW+ + + G P+
Sbjct: 10 YVALYKFVPQENE-------DLEMRPGDIITLLEDSNEDWWKGK---IQDRIGFFPA 56
Score = 27.2 bits (61), Expect = 1.8
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++ + +WW+ + + G P+
Sbjct: 33 TLLEDSNEDWWKGK---IQDRIGFFPA 56
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 44.4 bits (106), Expect = 9e-07
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+V A + ++P D DL + GD +Q++ K W++ G G+ P+
Sbjct: 4 YVEALYQFDPQQDGDL--------GLKPGDKVQLLEKLSPEWYKGS---CNGRTGIFPA 51
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 44.9 bits (107), Expect = 9e-07
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA+F++ + Q GDI+ I + D NW++ G G+ P
Sbjct: 10 ARAKFDFKAQTLK-------ELPLQKGDIVYIYKQIDQNWYEGEHH---GRVGIFPR 56
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 45.5 bits (108), Expect = 1e-06
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ F+Y P +DD + ++GDI++++ + + WW+ + G G+ PS
Sbjct: 20 RCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVLN---GKTGMFPS 67
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 45.1 bits (107), Expect = 1e-06
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA +++ ++D+ + F+ G+I+ ++ D NWW+ GL PS
Sbjct: 20 VRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKGENH---RGIGLFPS 66
Score = 27.8 bits (62), Expect = 1.5
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
++ D NWW+ GL PS
Sbjct: 44 VLDDSDANWWKGENH---RGIGLFPS 66
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 44.5 bits (106), Expect = 1e-06
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A ++Y DD I+F DI+ I D WW+ G GL P+
Sbjct: 12 AIALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVCK---GRYGLFPA 58
Score = 27.2 bits (61), Expect = 1.5
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I D WW+ G GL P+
Sbjct: 36 NIEMIDDGWWRGVCK---GRYGLFPA 58
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
R +F++ + Q GDI+ I + D NW + G G+ P+
Sbjct: 4 ARLKFDFQAQSPK-------ELTLQKGDIVYIHKEVDKNWLEGEHH---GRLGIFPA 50
Score = 26.8 bits (60), Expect = 2.2
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I + D NW + G G+ P+
Sbjct: 28 IHKEVDKNWLEGEHH---GRLGIFPA 50
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 45.0 bits (107), Expect = 1e-06
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A ++Y +D ++FQ G I+ +I K+D W++ + G GL P
Sbjct: 20 VVAIYDYTKDKED-------ELSFQEGAIIYVIKKNDDGWYEGV---MNGVTGLFPG 66
Score = 26.5 bits (59), Expect = 3.3
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+I K+D W++ + G GL P
Sbjct: 43 YVIKKNDDGWYEGV---MNGVTGLFPG 66
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 45.0 bits (107), Expect = 1e-06
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A ++Y DD I+F DI+ I D WW+ G GL P+
Sbjct: 20 AVALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVCK---GRYGLFPA 66
Score = 27.7 bits (62), Expect = 1.3
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I D WW+ G GL P+
Sbjct: 44 NIEMIDDGWWRGVCK---GRYGLFPA 66
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Q R +++ P + + F+ GDI+ + ++ D NW++ + G +G P
Sbjct: 3 QPCCRGLYDFEPENQG-------ELGFKEGDIITLTNQIDENWYEGM---IHGESGFFPI 52
Score = 26.0 bits (58), Expect = 3.8
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+ ++ D NW++ + G +G P
Sbjct: 30 LTNQIDENWYEGM---IHGESGFFPI 52
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 45.1 bits (107), Expect = 1e-06
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ +FNY +D ++ G + ++ K WW+ + G G PS
Sbjct: 18 MPAYVKFNYMAERED-------ELSLIKGTKVIVMEKCSDGWWRGSYN---GQVGWFPS 66
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+F+Y DD + +G+I+ I K+D WW+ + + G GL P
Sbjct: 4 AIVEFDYQAQHDD-------ELTISVGEIITNIRKEDGGWWEGQIN---GRRGLFPD 50
Score = 26.7 bits (60), Expect = 2.2
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I K+D WW+ + + G GL P
Sbjct: 28 NIRKEDGGWWEGQIN---GRRGLFPD 50
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+A ++ DDD + F+ DI+ IIS+ D + W + G G P+
Sbjct: 10 AKALLDFERHDDD-------ELGFRKNDIITIISQKDEHCWVGELN---GLRGWFPA 56
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA +++ P ++ + F+ GDI+ + ++ D NW++ + G +G P
Sbjct: 10 CRALYDFEPENEG-------ELGFKEGDIITLTNQIDENWYEGM---LHGHSGFFPI 56
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 45.3 bits (107), Expect = 1e-06
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
A+++YNP D +A + G L + D+ +++ + G GL+PS
Sbjct: 20 CVARYSYNPFDGPN-ENPEAELPLTAGKYLYVYGDMDEDGFYEGELLD--GQRGLVPS 74
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 44.8 bits (106), Expect = 1e-06
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-----DHNWWQARKDNVAGSAGL 121
A F+Y D+ + + GD +Q++S+D D WW + + G G+
Sbjct: 31 VWTAVFDYEAAGDE-------ELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS--GRVGV 81
Query: 122 IPS 124
PS
Sbjct: 82 FPS 84
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A+FN+N ++F+ G+ + ++ + D NW++ R G+ P
Sbjct: 10 AIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRI-PGTSRQGIFPI 58
Score = 26.8 bits (60), Expect = 2.2
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++ + D NW++ R G+ P
Sbjct: 33 TLLRQVDENWYEGRI-PGTSRQGIFPI 58
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
I V A ++Y DDL +FQ GD + ++ + WW+AR G IP
Sbjct: 3 DIIVVALYDYVSWSPDDL--------SFQKGDQMVVLEESGE-WWKARS-LATRKEGYIP 52
Query: 124 S 124
S
Sbjct: 53 S 53
Score = 28.9 bits (65), Expect = 0.68
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
++ + WW+AR G IPS
Sbjct: 27 QMVVLEESGE-WWKARS-LATRKEGYIPS 53
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 44.3 bits (105), Expect = 2e-06
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA--GLIPS 124
+ Y + ++ G ++ I+ K+ WWQ G P+
Sbjct: 9 IAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA 61
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 44.3 bits (105), Expect = 2e-06
Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ A +++ + + +AF+ GD+++++ + +WW + + G P+
Sbjct: 11 VSAEAVWDHVTMANR-------ELAFKAGDVIKVLDASNKDWWWGQ---IDDEEGWFPA 59
Score = 27.4 bits (61), Expect = 1.8
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW + + G P+
Sbjct: 36 KVLDASNKDWWWGQ---IDDEEGWFPA 59
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 43.9 bits (104), Expect = 2e-06
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPS 124
R +++ + + G+I+ + + + W + + + G GL+P+
Sbjct: 12 ARVMYDFAAEPGN------NELTVTEGEIITVTNPNVGGGWLEGKNNK--GEQGLVPT 61
Score = 30.0 bits (68), Expect = 0.24
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 233 IISKDDH-NWWQARKDNVAGSAGLIPS 258
+ + + W + + + G GL+P+
Sbjct: 37 VTNPNVGGGWLEGKNNK--GEQGLVPT 61
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 44.0 bits (104), Expect = 2e-06
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
F+ +Y F+ G+ L++IS + WW+A G IP
Sbjct: 19 FLAVLSDYPSPDISPP--------IFRRGEKLRVISDEGG-WWKAI-SLSTGRESYIPG 67
Score = 29.7 bits (67), Expect = 0.30
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
++IS + WW+A G IP
Sbjct: 41 KLRVISDEGG-WWKAI-SLSTGRESYIPG 67
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
Q+++ D+L + GD + I+ K +WW + + +G +GL+P+
Sbjct: 5 GIVQYDFMAESQDEL--------TIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPA 54
Score = 29.4 bits (67), Expect = 0.23
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+ K +WW + + +G +GL+P+
Sbjct: 30 LDDKKSKDWWMCQLVD-SGKSGLVPA 54
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 43.5 bits (103), Expect = 3e-06
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 68 VRAQFNYNP--LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
A +++ +L + GDI+ I + W A+ + G +P+
Sbjct: 5 FEAAYDFPGSGSSSEL--------PLKKGDIVFISRDEPSGWSLAKLLD-GSKEGWVPTA 55
Query: 126 ELQEWRTACSTI 137
+ ++ +T+
Sbjct: 56 YMTPYKDTRNTV 67
Score = 30.4 bits (69), Expect = 0.15
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 271
+ I + W A+ + G +P+ + ++ +T+
Sbjct: 27 IVFISRDEPSGWSLAKLLD-GSKEGWVPTAYMTPYKDTRNTV 67
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 43.5 bits (103), Expect = 3e-06
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V F +P D D + + GDI+ IISK W + G
Sbjct: 14 VHTDFTPSPYDTD-------SLKLKKGDIIDIISKPPMGTWMGLLN---NKVGTFKF 60
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 43.3 bits (103), Expect = 3e-06
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V A F+Y +DL FQ GDI+ ++SK + W + G G+ P
Sbjct: 8 VEALFSYEATQPEDL--------EFQEGDIILVLSKVNEEWLEGE---SKGKVGIFPK 54
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 43.4 bits (103), Expect = 3e-06
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
Q+++ D+L + GD + I+ K +WW + + +G +GL+P+
Sbjct: 9 GIVQYDFMAESQDEL--------TIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPA 58
Score = 29.2 bits (66), Expect = 0.37
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+ K +WW + + +G +GL+P+
Sbjct: 34 LDDKKSKDWWMCQLVD-SGKSGLVPA 58
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A F++ +L F+ GD++ ++S+ + +W + V G+ G+ P
Sbjct: 7 AEALFDFTGNSKLEL--------NFKAGDVIFLLSRINKDWLEGT---VRGATGIFPL 53
Score = 26.3 bits (59), Expect = 2.8
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
++S+ + +W + V G+ G+ P
Sbjct: 31 LLSRINKDWLEGT---VRGATGIFPL 53
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 43.1 bits (102), Expect = 4e-06
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
Y+ ++ + GDIL +++ + +WW+ + G +P+
Sbjct: 4 PPLPPYSAGGREV--------TMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 48
Score = 28.9 bits (65), Expect = 0.43
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ + G +P+
Sbjct: 24 LTLLNSTNKDWWKVEVN---DRQGFVPA 48
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 43.0 bits (102), Expect = 4e-06
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+A +++ P +D + F+ GD++ + ++ D NW++ + G +G P
Sbjct: 16 CKALYDFEPENDG-------ELGFREGDLITLTNQIDENWYEGM---LHGQSGFFPL 62
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 42.5 bits (101), Expect = 4e-06
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPS 124
+ A + Y DD I+ GDI+ +I DD + W D G GL P+
Sbjct: 3 MEAIYAYEAQGDD-------EISIDPGDIITVIRGDDGSGWTYGECD---GLKGLFPT 50
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 43.0 bits (102), Expect = 4e-06
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A + Y+ + DL F G+ + + KD WW + +G+ PS
Sbjct: 10 EYIALYPYSSVEPGDL--------TFTEGEEILVTQKDG-EWWTGS---IGDRSGIFPS 56
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 43.0 bits (102), Expect = 4e-06
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+A NY + + F GD++ + + D NW+Q + G +G+ P+
Sbjct: 10 AKALCNYRGKNPG-------DLKFNKGDVILLRRQLDENWYQGE---INGVSGIFPA 56
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 43.1 bits (102), Expect = 4e-06
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 13/59 (22%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
A++++ DD+L +F+ GDIL++++++ D NW++A + G G IP
Sbjct: 12 AIAKYDFKATADDEL--------SFKRGDILKVLNEECDQNWYKAELN---GKDGFIPK 59
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 43.6 bits (103), Expect = 5e-06
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN----WWQARKDNVAGSAGL 121
+ RA++++ + D+ I+F+ GD+L + K+ W A D + GL
Sbjct: 18 VVARAEYDFVAVSDE-------EISFRAGDMLNLALKEQQPKVRGWLLASLDG--QTTGL 68
Query: 122 IPS 124
IP+
Sbjct: 69 IPA 71
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ + Y DDD I GD + ++++D + W ++ G GL+P+
Sbjct: 4 NKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPT 53
Score = 29.4 bits (67), Expect = 0.20
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS 258
++++D + W ++ G GL+P+
Sbjct: 26 ISLVARDTGSGWTKINNDTTGETGLVPT 53
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 42.6 bits (101), Expect = 5e-06
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 68 VRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A+FN+N ++ +F+ G+ + ++ + D NW++ R G+ P
Sbjct: 9 AIAKFNFNGDTQVEM--------SFRKGERITLLRQVDENWYEGRI-PGTSRQGIFPI 57
Score = 26.8 bits (60), Expect = 2.5
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
++ + D NW++ R G+ P
Sbjct: 33 LLRQVDENWYEGRI-PGTSRQGIFPI 57
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 42.6 bits (101), Expect = 5e-06
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A+++Y+ +D+ + F D + I D +WW + GS GL PS
Sbjct: 3 ATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELEK-DGSKGLFPS 51
Score = 26.8 bits (60), Expect = 1.9
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
I D +WW + GS GL PS
Sbjct: 27 NIEFVDDDWWLGELEK-DGSKGLFPS 51
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 45.8 bits (108), Expect = 5e-06
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
RA +Y +A GD+++++ K + WW + G IP+ L
Sbjct: 14 YRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQMK---AKRGWIPASFL 63
Query: 128 QE 129
+
Sbjct: 64 EP 65
Score = 43.4 bits (102), Expect = 3e-05
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A Y ++ D + G+ +++I K WW RKD G PS
Sbjct: 83 PYVAIKAYTAVEGDEVS-------LLEGEAVEVIHKLLDGWWVIRKD---DVTGYFPS 130
Score = 29.6 bits (66), Expect = 1.1
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
+++ K + WW + G IP+ L+
Sbjct: 37 EVVEKSESGWWFCQMK---AKRGWIPASFLEP 65
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 42.6 bits (101), Expect = 5e-06
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA ++Y+ D+D ++F+ GD + + D W G G++P+
Sbjct: 9 YRAMYDYSAQDED-------EVSFRDGDYIVNVQPIDDGWMYGT-VQRTGRTGMLPA 57
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 47.1 bits (112), Expect = 5e-06
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 63 ILQIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGL 121
++ FV A ++Y + DL +F+ G+ LQI++ + +WW A + G G
Sbjct: 1 MVTTFV-ALYDYESRTETDL--------SFKKGERLQIVNNTEGDWWLAHSLS-TGQTGY 50
Query: 122 IPS 124
IPS
Sbjct: 51 IPS 53
Score = 33.6 bits (77), Expect = 0.086
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
QI++ + +WW A + G G IPS
Sbjct: 26 RLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 42.2 bits (100), Expect = 5e-06
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 68 VRAQFNYNPLD--DDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
A +++ +L + GD++ I ++ W + + G +P+
Sbjct: 3 FEAAYDFPGSGSPSEL--------PLKKGDVIYITREEPSGWSLGKLLD-GSKEGWVPTA 53
Query: 126 ELQEW 130
++
Sbjct: 54 YMKPH 58
Score = 29.9 bits (68), Expect = 0.14
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 264
I ++ W + + G +P+ ++
Sbjct: 27 YITREEPSGWSLGKLLD-GSKEGWVPTAYMKPH 58
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 43.1 bits (102), Expect = 6e-06
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A F++ + F+ GD++ ++S+ + +W + V G+ G+ P
Sbjct: 21 AEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT---VRGATGIFPL 67
Score = 26.1 bits (58), Expect = 5.7
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
++S+ + +W + V G+ G+ P
Sbjct: 44 FLLSRINKDWLEGT---VRGATGIFPL 67
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 42.7 bits (101), Expect = 6e-06
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG 117
+ V+A F+Y +D + F I+Q + K + WW+
Sbjct: 6 KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ 51
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 41.8 bits (99), Expect = 9e-06
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
VRA ++Y+ + D ++F+ GD L + + D+ W + R D+ G GL P+
Sbjct: 6 VRALYDYDGQEQD-------ELSFKAGDELTKLGEEDEQGWCRGRLDS--GQLGLYPA 54
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 42.8 bits (101), Expect = 9e-06
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
AQ+ + + + F+ G+ + +I K + NW++ R G G+ P+
Sbjct: 20 AVAQYTFKGDLEVELS-------FRKGEHICLIRKVNENWYEGRITG-TGRQGIFPA 68
Score = 27.0 bits (60), Expect = 2.8
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+I K + NW++ R G G+ P+
Sbjct: 44 LIRKVNENWYEGRITG-TGRQGIFPA 68
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
+V A +Y + L+ +F GD+++++ + W G +GL P+
Sbjct: 10 YVIALRSYITDNCSLL-------SFHRGDLIKLLPVATLEPGWQFGS---AGGRSGLFPA 59
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 16/63 (25%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDH----NWWQARKDNVAGSAGL 121
A + + ++L + L+I+ D WW A + G G
Sbjct: 15 VYFAVYTFKARNPNEL--------SVSANQKLKILEFKDVTGNTEWWLAEVN---GKKGY 63
Query: 122 IPS 124
+PS
Sbjct: 64 VPS 66
Score = 27.0 bits (60), Expect = 2.7
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 232 QIISKDDH----NWWQARKDNVAGSAGLIPS 258
+I+ D WW A + G G +PS
Sbjct: 39 KILEFKDVTGNTEWWLAEVN---GKKGYVPS 66
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 42.5 bits (100), Expect = 1e-05
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ D +A ++GDI+++ + + W+ + G GL P
Sbjct: 21 AIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEVN---GRKGLFPF 67
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 41.9 bits (99), Expect = 1e-05
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
+A + D ++F G + + + W + + G GLIP
Sbjct: 13 AKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTLN---GKTGLIPE 60
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG 117
+ V+A F+Y +D + F I+Q + K D WW+
Sbjct: 3 KSAVKALFDYKAQRED-------ELTFTKSAIIQNVEKQDGGWWRGDYGGKKQ 48
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
+A++++ D ++ + GDI++I++K WW+ G G PS
Sbjct: 7 TAKARYDFCARDRS-------ELSLKEGDIIKILNKKGQQGWWRGEIY---GRIGWFPS 55
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 45.3 bits (106), Expect = 1e-05
Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 43/192 (22%)
Query: 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP--E 126
RA F++N D++ +P F+ GDIL+I K + WW A + G G+IP P E
Sbjct: 138 RALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPYVE 188
Query: 127 LQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSF 186
+A + +++ + + + + + + + Y V++
Sbjct: 189 KYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVP 248
Query: 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARK 246
A V + + V + W+
Sbjct: 249 NAYD----------------------KTALALEVGELVKV-------TKINVSGQWEGE- 278
Query: 247 DNVAGSAGLIPS 258
G G P
Sbjct: 279 --CNGKRGHFPF 288
Score = 38.4 bits (88), Expect = 0.002
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V + N D +A ++G+++++ + W+ G G P
Sbjct: 239 YARVIQKRVPNAYDKT-------ALALEVGELVKVTKINVSGQWEGE---CNGKRGHFPF 288
Score = 31.5 bits (70), Expect = 0.33
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS----PELQEWRTACSTIDKTKHEQGIYSSFS 285
+ +I K + WW A + G G+IP + + I +
Sbjct: 158 ILRIRDKPEEQWWNAE--DSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGG 215
Query: 286 LPFSVYRRDTTRSPRSDEENGRAYYFISHD 315
Y + + +P + +NG Y +
Sbjct: 216 PEPGPYAQPSVNTPLPNLQNGPIYARVIQK 245
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
+++Y+ + DD + ++G+I++ + K + W + + G G+ P
Sbjct: 4 YIVEYDYDAVHDD-------ELTIRVGEIIRNVKKLQEEGWLEGELN---GRRGMFPD 51
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 41.1 bits (97), Expect = 2e-05
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
I+ R P D + +A ++G+++++ + W+ + G G P
Sbjct: 7 IYARVIQKRVPNAYD-----KTALALEVGELVKVTKINVSGQWEGECN---GKRGHFPF 57
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 41.2 bits (97), Expect = 2e-05
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 14/62 (22%)
Query: 66 IFVRAQFNYNPL---DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLI 122
+F +A P L A ++GDI+++ + + W+ + G GL
Sbjct: 2 VFAKAIQKRVPCAYDKTAL--------ALEVGDIVKVTRMNINGQWEGEVN---GRKGLF 50
Query: 123 PS 124
P
Sbjct: 51 PF 52
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 64 LQIFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHN---WWQARKDNVAGSA 119
L + +A ++ D+L +F+ GDI+ ++ +D WW + G
Sbjct: 2 LNVLAKALYDNVAESPDEL--------SFRKGDIMTVLEQDTQGLDGWWLCS---LHGRQ 50
Query: 120 GLIPS 124
G++P
Sbjct: 51 GIVPG 55
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 42.4 bits (99), Expect = 2e-05
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A +N+ ++ QIGD+++I W++ G+ P
Sbjct: 61 HGVAIYNFQGSGAP-------QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPK 110
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 41.1 bits (97), Expect = 2e-05
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAGSAGLI 122
+ RA ++ P D +AF GDIL I+ + + WW+ G GL
Sbjct: 8 LLARALYDNCPDCSD-------ELAFSRGDILTILEQHVPESEGWWKCLLH---GRQGLA 57
Query: 123 PS 124
P+
Sbjct: 58 PA 59
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 65 QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
+I V A ++Y + +DL +FQ GD + ++ + WW+AR G IP
Sbjct: 8 RIIVVALYDYEAIHHEDL--------SFQKGDQMVVLEESGE-WWKAR-SLATRKEGYIP 57
Query: 124 S 124
S
Sbjct: 58 S 58
Score = 31.6 bits (72), Expect = 0.44
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS--------PELQEWRTACSTIDKTKHEQGIY 281
++ + WW+AR G IPS E +EW I + E+ +
Sbjct: 32 QMVVLEESGE-WWKAR-SLATRKEGYIPSNYVARVDSLETEEW--FFKGISRKDAERQLL 87
Query: 282 SSFSLPFSVYRRDTTRSP 299
+ ++ S RD+ +
Sbjct: 88 APGNMLGSFMIRDSETTK 105
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 40.5 bits (95), Expect = 3e-05
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 61 GDILQIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA 119
G ++ VRA Y + D D I +F GD+ + ++ + W
Sbjct: 1 GSHMRRRVRAILPYTKVPDTDEI-------SFLKGDMFIVHNELEDGWMWVTNLR-TDEQ 52
Query: 120 GLIPS 124
GLI
Sbjct: 53 GLIVE 57
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 40.3 bits (95), Expect = 3e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 67 FVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIP 123
+ R F Y +D+L F+ G+I+ +ISK+ + WW+ + G G+ P
Sbjct: 8 YCRTLFPYTGTNEDEL--------TFREGEIIHLISKETGEAGWWKGELN---GKEGVFP 56
Query: 124 S 124
Sbjct: 57 D 57
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 40.5 bits (95), Expect = 3e-05
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKD 113
V A ++Y ++ + GDIL +++ + +WW+ +
Sbjct: 23 LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVN 62
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 41.0 bits (96), Expect = 3e-05
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR---KDNVAGSAGLI 122
+ VRA ++ L D + + GD++ ++ + W+ G
Sbjct: 19 LKVRALKDFWNLHDP------TALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYF 72
Query: 123 PS 124
P
Sbjct: 73 PP 74
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 43.7 bits (102), Expect = 3e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+VRA F++N D++ +P F+ GDIL+I K + WW A + G G+IP
Sbjct: 136 AEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPV 186
Query: 125 PELQEWRTACST 136
P ++++R A ++
Sbjct: 187 PYVEKYRPASAS 198
Score = 34.5 bits (78), Expect = 0.034
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACST 270
+ +I K + WW A + G G+IP P ++++R A ++
Sbjct: 160 ILRIRDKPEEQWWNAE--DSEGKRGMIPVPYVEKYRPASAS 198
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 40.2 bits (94), Expect = 3e-05
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
F Y +D ++ G + ++ WW+ + G G PS
Sbjct: 4 AFVXFAYVAERED-------ELSLVXGSRVTVMEXCSDGWWRGSYN---GQIGWFPS 50
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 40.4 bits (95), Expect = 4e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ +A ++ D+ + F DI+ ++ + + NWW V G G P
Sbjct: 10 NLKAQALCSWTAKKDN-------HLNFSKHDIITVLEQQE-NWWFGE---VHGGRGWFPK 58
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 40.9 bits (96), Expect = 4e-05
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
RA + + + D ++F GDI+Q+ K + W G+ G P
Sbjct: 7 GYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGEPGWLYGSFQ---GNFGWFPC 56
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 44.2 bits (104), Expect = 4e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 53 QAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK 112
Q I I D + A +++ +DD + F+ GD+++++ + WW
Sbjct: 18 QLAINELISDGSVVCAEALWDHVTMDDQELG-------FKAGDVIEVMDATNREWW---W 67
Query: 113 DNVAGSAGLIPSPELQEWRTACSTID 138
VA G P+ ++ D
Sbjct: 68 GRVADGEGWFPASFVRLRVNQDEPAD 93
Score = 29.5 bits (66), Expect = 1.7
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID 272
+ +++ + WW VA G P+ ++ D
Sbjct: 54 VIEVMDATNREWW---WGRVADGEGWFPASFVRLRVNQDEPAD 93
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 40.4 bits (95), Expect = 4e-05
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 68 VRAQFNYN-PLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
VRA Y D D I +F GD+ + ++ + W GLI
Sbjct: 10 VRAILPYTKVPDTDEI-------SFLKGDMFIVHNELEDGWMWVTNLR-TDEQGLIVE 59
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 40.0 bits (94), Expect = 5e-05
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAGSAGLI 122
FV+A ++Y DD+L +F G I++I++K DD +W+ G G+
Sbjct: 10 FVKALYDYEGQTDDEL--------SFPEGAIIRILNKENQDDDGFWEGE---FNGRIGVF 58
Query: 123 PS 124
PS
Sbjct: 59 PS 60
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 39.9 bits (94), Expect = 5e-05
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
+ + F Y +DD + + GDI+ +I+KD D WW+ + G G+ P
Sbjct: 4 YCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE---LNGRRGVFPD 53
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 39.6 bits (93), Expect = 7e-05
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
+ + F Y +DD + + GDI+ +I+KD D WW+ + G G+ P
Sbjct: 9 YCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE---LNGRRGVFPD 58
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 39.1 bits (92), Expect = 8e-05
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPS 124
A +++ DL F+ GD++ I+ K D ++WW R + G G+ P+
Sbjct: 6 AVALYSFAGEESGDL--------PFRKGDVITILKKSDSQNDWWTGRVN---GREGIFPA 54
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 39.6 bits (93), Expect = 8e-05
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLI 122
+ + + F Y +DD + + GDI+ +I+KD D WW+ + G G+
Sbjct: 9 KDYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE---LNGRRGVF 58
Query: 123 PS 124
P
Sbjct: 59 PD 60
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 39.7 bits (93), Expect = 9e-05
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPS 124
V A +++ DL FQ GD + +ISK D +WW+ + + G G+ P+
Sbjct: 20 VTALYSFEGQQPGDL--------NFQAGDRITVISKTDSHFDWWEGK---LRGQTGIFPA 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 63/408 (15%), Positives = 121/408 (29%), Gaps = 149/408 (36%)
Query: 1 MVLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQI--FVRAQFNYNPLDDDLIPCAQAGIAF 58
+V L +TL +++ + ++ + L I ++ + P D L I+
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKDYL---LSIPISC 238
Query: 59 -QIGDILQIFVRAQF-------NYNPLDDDLIPCAQAGIAFQIGDIL--QIISKDDHNW- 107
IG ++Q+ A + + P +L + G ++ I++ D +W
Sbjct: 239 PLIG-VIQL---AHYVVTAKLLGFTP--GELRSYLK-GATGHSQGLVTAVAIAETD-SWE 290
Query: 108 --------------W------QA----------RKDNVAGSAGLIPSPELQEWRTACSTI 137
+ +A +D++ + G +PSP L + S +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPML-----SISNL 344
Query: 138 DKTKHEQVNCSIFGRKKKLYKDK--YLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLG 195
+ EQV + L K ++ N L VV P ++L L
Sbjct: 345 TQ---EQVQDYVNKTNSHLPAGKQVEISLVNG-AKNL-------VVSGPP---QSLYGLN 390
Query: 196 AH--------GVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKD 247
G+ + I F ++ +F+ V + F H
Sbjct: 391 LTLRKAKAPSGLDQSRI------PFSERKLKFSNRFLPV-ASPF-------H-------- 428
Query: 248 NVAGSAGLIPSPELQEWRTACSTIDKTKHEQGI-YSSFSLPFSVYRRDTTRSPRSDEENG 306
S L A I+K + + +++ + VY DT D +
Sbjct: 429 ----------SHLLVP---ASDLINKDLVKNNVSFNAKDIQIPVY--DTF-----DGSDL 468
Query: 307 RAYYFISHDEMMSDIAANQYLEYGKSILTHP---------SQRHIVSC 345
R + I I+ P HI+
Sbjct: 469 RVL----SGSISERIV--------DCIIRLPVKWETTTQFKATHILDF 504
Score = 40.8 bits (95), Expect = 6e-04
Identities = 62/406 (15%), Positives = 116/406 (28%), Gaps = 157/406 (38%)
Query: 25 RYLSTYLQIFVRAQFNY-NPLDDDLIPCAQAGIA-----F--QIGDILQIF--VRAQFN- 73
+ Y+ + A+ + + L G A F Q G+ F +R +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQT 179
Query: 74 YNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNW------------WQARKDNVAGSAGL 121
Y+ L DLI + L + + + W N L
Sbjct: 180 YHVLVGDLI--------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 122 IPSP---------ELQEWRTACSTIDKTKHEQVN---CSIFGRKKKLYKDKYLAKHNAVF 169
+ P +L + + T ++ G + L A
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGL----VTA---VAI 283
Query: 170 DQLDLVTYEEVVKLPSFK---RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITV 226
+ D ++E SF RK + +L GV R + AYP
Sbjct: 284 AETD--SWE------SFFVSVRKAITVLFFIGV-RCYE------------AYPNTSL--- 319
Query: 227 CSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP----------ELQEWRTACSTIDKT-K 275
+D++ + G +PSP ++Q++ ++KT
Sbjct: 320 --------------PPSILEDSLENNEG-VPSPMLSISNLTQEQVQDY------VNKTNS 358
Query: 276 H---EQGIYSSFSL------------PFSVY------RR-------DTTRSPRSDEENGR 307
H + + SL P S+Y R+ D +R P S+ R
Sbjct: 359 HLPAGKQVE--ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE----R 412
Query: 308 AYYF------IS---HDEMMSDIAANQYLE--YGKSILTHPSQRHI 342
F ++ H ++ A++ + ++ + I
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQI 457
Score = 32.3 bits (73), Expect = 0.27
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 22/69 (31%)
Query: 42 NP------LDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGD 95
NP + + + + G +++I V NYN + Q A GD
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEI-V----NYN------VENQQYVAA---GD 1858
Query: 96 I--LQIISK 102
+ L ++
Sbjct: 1859 LRALDTVTN 1867
Score = 28.5 bits (63), Expect = 5.1
Identities = 41/290 (14%), Positives = 75/290 (25%), Gaps = 123/290 (42%)
Query: 152 RKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINK 211
+ K+L K+ A+ + K P K+ L A G G L+
Sbjct: 118 KTKELIKNYITARI--------------MAKRPFDKKSNSALFRAVGEG----NAQLVAI 159
Query: 212 F-----PDKY---------AYP--VPQFITVCSVMFQIISKDDHNW------------WQ 243
F D Y Y V I + + + + W
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 244 ARKDNVAGSAGLIPSP---------ELQEWRTACSTIDK------------TKHEQGIYS 282
N L+ P +L + + T H QG+ +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 283 -----------SF--------SLPFSV-YR-----RDTTRSP---RSDEENG-------- 306
SF ++ F + R +T+ P EN
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 307 --RAYYFISHDEMMSDIAA-NQYLEYGKSILTHPSQRHI-VSCRKLVVNS 352
++ +++ + N +L P+ + + +S +VN
Sbjct: 340 SISN---LTQEQVQDYVNKTNSHL---------PAGKQVEIS----LVNG 373
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 39.1 bits (91), Expect = 1e-04
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ + GDIL +++ + +WW+ + G +P+
Sbjct: 8 VTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 40
Score = 28.3 bits (63), Expect = 0.94
Identities = 4/26 (15%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ + G +P+
Sbjct: 18 LLNSTNKDWWKVEVN---DRQGFVPA 40
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA F + P +D + ++ D L + + + W++A + G+ G+ P+
Sbjct: 9 HRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAY-NMRTGARGVFPA 57
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 41.9 bits (97), Expect = 2e-04
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 43/191 (22%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
A F++ + F+ GD++ ++S+ + +W + V G+ G+ P +
Sbjct: 177 AEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT---VRGATGIFPLSFV 226
Query: 128 QEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFK 187
+ + + + + K +A E++ P K
Sbjct: 227 KI----LKDFPEEDDPTNWLRCYYYEDTISTIKDIAVE------------EDLSSTPLLK 270
Query: 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKD 247
+ RR + Y + + +S +D +
Sbjct: 271 DLLELT-------RREFQR---EDIALNYRDAEGDLVRL-------LSDEDVALMVRQAR 313
Query: 248 NVAGSAGLIPS 258
+ L P
Sbjct: 314 GLPSQKRLFPW 324
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIPS 124
A++N+ D ++ + GD+++I S+ D WW+ G G PS
Sbjct: 10 AVARYNFAARDMR-------ELSLREGDVVRIYSRIGGDQGWWKGE---TNGRIGWFPS 58
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 38.5 bits (90), Expect = 2e-04
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
V + D + Q D++ ++ ++D W + G G P
Sbjct: 20 VEITKAFFAKQAD-------EVTLQQADVVLVLQQED-GWLYGER-LRDGETGWFPE 67
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 40.5 bits (94), Expect = 2e-04
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 20/122 (16%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS-- 124
A +N+ ++ QIGD+++I W++ G+ P
Sbjct: 19 HGVAIYNFQGSGAP-------QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSF 70
Query: 125 --------PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVT 176
+ + E ++K Y+A F Q+ +
Sbjct: 71 IHIKEVTVEKRRNTENIIPAEIPLAQEVTTT--LWEWGSIWKQLYVASKKERFLQVQSMM 128
Query: 177 YE 178
Y+
Sbjct: 129 YD 130
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 41.7 bits (98), Expect = 2e-04
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A +++ D+ L + G+ L+++ + + W + G +PS
Sbjct: 45 LFVALYDFVASGDNTL--------SITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPS 93
Score = 28.2 bits (63), Expect = 4.2
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 230 MFQIISK-DDHNWWQARKDNVAGSAGLIPS 258
+++ + W +A+ G +PS
Sbjct: 67 KLRVLGYNHNGEWCEAQTK---NGQGWVPS 93
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 37.7 bits (88), Expect = 3e-04
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQII-SKDDHNWWQARKDNVAGSAGLIPS 124
V+A F++ D+ ++F+ GD++ ++ + W + G P
Sbjct: 10 VKAIFSHAAGDNS------TLLSFKEGDLITLLVPEARDGWHYGESEK-TKMRGWFPF 60
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 37.3 bits (87), Expect = 4e-04
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 89 IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
+ + GDIL +++ + +WW+ + G +P+
Sbjct: 6 VTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 38
Score = 26.5 bits (59), Expect = 2.4
Identities = 4/26 (15%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 233 IISKDDHNWWQARKDNVAGSAGLIPS 258
+++ + +WW+ + G +P+
Sbjct: 16 LLNSTNKDWWKVEVN---DRQGFVPA 38
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 41.2 bits (97), Expect = 4e-04
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 68 VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
A++N++ + DL F GD+L I++ D NW++A+ N G G+IP+
Sbjct: 14 CIAKYNFHGTAEQDL--------PFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPA 62
Score = 29.2 bits (66), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 230 MFQIISK-DDHNWWQARKDNVAGSAGLIPS 258
+ I++ D NW++A+ N G G+IP+
Sbjct: 35 VLTIVAVTKDPNWYKAK--NKVGREGIIPA 62
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
RA F + P +D + ++ D L + + + W++A G+ G+ P+
Sbjct: 6 HRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAYN-MRTGARGVFPA 54
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 40.6 bits (95), Expect = 5e-04
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
A ++Y + + F+ G+ LQI++ + +WW A + G G IPS
Sbjct: 88 FVALYDYESRTETDLS-------FKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 136
Score = 31.8 bits (72), Expect = 0.35
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
QI++ + +WW A + G G IPS
Sbjct: 109 RLQIVNNTEGDWWLAHSLS-TGQTGYIPS 136
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 37.0 bits (85), Expect = 0.001
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 19/70 (27%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQ-------ARKDN 114
V+AQ +Y D D + + GD++ +I + W +
Sbjct: 46 KVQAQHDYTATDTDE-------LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKE 98
Query: 115 VAGSAGLIPS 124
+ G+ P
Sbjct: 99 LEKCRGVFPE 108
Score = 28.9 bits (64), Expect = 1.0
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 34 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDD 79
V+AQ +Y D D + + GD+ + V N D+
Sbjct: 46 KVQAQHDYTATDTDE-------LQLKAGDV--VLVIPFQNPEEQDE 82
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 38.2 bits (87), Expect = 0.003
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
VRA ++Y + D ++F+ GD L + D+ W + R DN G GL P+
Sbjct: 430 RVRALYDYEGQEHD-------ELSFKAGDELTKMEDEDEQGWCKGRLDN--GQVGLYPA 479
Score = 28.2 bits (61), Expect = 4.5
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 229 VMFQIISKDDHNWWQARKDNVAGSAGLIPS 258
+ ++ +D+ W + R DN G GL P+
Sbjct: 452 ELTKMEDEDEQGWCKGRLDN--GQVGLYPA 479
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 35.7 bits (82), Expect = 0.003
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNVAGSAGLIPS 124
+A+ N+N D ++ GD++ +I K D N W + G + S
Sbjct: 21 QAERNFNAAQDL-------DVSLLEGDLVGVIKKKDPMGSQNRWLIDNG---VTKGFVYS 70
Query: 125 PELQEWRTACSTIDKT 140
L+ + S D +
Sbjct: 71 SFLKPYNPRRSHSDAS 86
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 35.0 bits (80), Expect = 0.003
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 91 FQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
GDI+++ + +HNWW+ R + G P
Sbjct: 37 LNPGDIVELTKAEAEHNWWEGR-NTATNEVGWFPC 70
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 37.1 bits (86), Expect = 0.005
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
V ++Y +DD + F G I+ +++K+D +WW+ G GL PS +
Sbjct: 5 VIGMYDYTAQNDDELA-------FSKGQIINVLNKEDPDWWKGEVS---GQVGLFPSNYV 54
Query: 128 QEWRTACSTIDKTKHEQVNCSIFGRKKKLYK 158
+ + + + ++K
Sbjct: 55 KLTTDMDPSQQWCSDLHLLDMLTPTERKRQG 85
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 34.8 bits (80), Expect = 0.007
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD----DHNWWQARKDNVAGSAGLIP 123
++ + Y P +DD + GD + + + W G +GL+P
Sbjct: 19 LQVIYPYTPQNDD-------ELELVPGDFIFMSPMEQTSTSEGWIYGTSL-TTGCSGLLP 70
Query: 124 S 124
Sbjct: 71 E 71
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 34.2 bits (78), Expect = 0.007
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 91 FQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
GDI+++ + +HNWW+ R + G P
Sbjct: 29 LNPGDIVELTKAEAEHNWWEGR-NTATNEVGWFPC 62
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 35.8 bits (82), Expect = 0.009
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 67 FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
V A +Y P D DL F+ G+ L+I+ + WW+A+ G G IP
Sbjct: 14 LVIALHSYEPSHDGDLG--------FEKGEQLRILEQSGE-WWKAQ-SLTTGQEGFIPFN 63
Query: 126 ELQEW 130
+ +
Sbjct: 64 FVAKA 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.44
Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 62/218 (28%)
Query: 11 KTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRA 70
K L L +R + ++ +L + + L P ++ + ++
Sbjct: 267 KIL---LTTR---FKQVTDFLSAATTTHISLDHHSMTLTP----------DEVKSLLLKY 310
Query: 71 QFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 130
+ P DL ++ I + I +D W W
Sbjct: 311 -LDCRP--QDLPREVLTTNPRRLSIIAESI-RDGLATWD-------------------NW 347
Query: 131 RTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKT 190
+ DK + S+ + Y+ + L + +P+
Sbjct: 348 KH--VNCDK-LTTIIESSLNVLEPAEYRKMFD----------RLSVFPPSAHIPT---IL 391
Query: 191 LVLLGAHGVGR--RHI-----KNTLINKFPDKYAYPVP 221
L L+ + + K +L+ K P + +P
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Score = 28.3 bits (62), Expect = 4.8
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 14/87 (16%)
Query: 118 SAGLIPSPE--LQEWRTACSTIDKTKHEQVNCS---------IFGRKKKLYKDKYLAKHN 166
+ SPE L+ + ID + + S I ++L K K +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYE 244
Query: 167 AVFDQLDLVTYEEVVKLPSFKRKTLVL 193
L V + + K L+
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLT 271
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 28.3 bits (62), Expect = 4.0
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 82 IPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
P I + GDI+ + + + G GL PS
Sbjct: 452 QPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRK-LGRTGLYPS 493
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI
protein; NMR {Tetrahymena thermophila}
Length = 137
Score = 27.4 bits (60), Expect = 4.2
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 38 QFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDIL 97
Q + +P +DL+ QA I FQ D ++ ++ N+N ++ L Q I QI D++
Sbjct: 64 QQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQKLLNHN--NNKL----QIEIRGQICDVI 117
Query: 98 QIISKDDH-NWW 108
I +D+ N+W
Sbjct: 118 STIPEDEEKNYW 129
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
{Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Length = 344
Score = 27.9 bits (63), Expect = 5.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 61 GDIL--QIFVRAQFNYNPLDDDLIPCAQ----AGIAF------QIGDILQIISKD--DHN 106
+I ++ + A Y P+D+ LIP + G AF ++G LQ + DHN
Sbjct: 189 PNINDHEVTIEADT-YLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHN 247
Query: 107 W 107
+
Sbjct: 248 F 248
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel,
pilus assembly, outer-membrane, cell adhesion-T
protein-chaperone complex; 2.80A {Escherichia coli} PDB:
3ohn_A 1zdv_A
Length = 843
Score = 28.0 bits (62), Expect = 6.1
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 270 TIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHD 315
+ +Q + + ++PFS + R ++S + A Y +SHD
Sbjct: 539 NAWQKGRDQMLALNVNIPFSHWLRSDSKSQWR---HASASYSMSHD 581
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 27.1 bits (60), Expect = 8.3
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 152 RKKKLYKDKYLAK--HNAVFDQLDLVTYEE----------VVKLPSFKRKTLVLLGAHGV 199
+ + L K + +D+ V + PS ++K L L G G+
Sbjct: 104 AISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGI 163
Query: 200 GRRHIKNTLINKFPDKYAYPVPQFITV 226
G+ ++ + ++ +K +
Sbjct: 164 GKSYLLAAMAHELSEKKGVST-TLLHF 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.421
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,519,928
Number of extensions: 330818
Number of successful extensions: 1250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 356
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)