BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12794
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 131 bits (330), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWRCYYSNTDA+IYVVDS DRDRIGIS R AILV+ ANKQDM+ M+
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+E+ ALGL LKDR +QIFKTSA +G GL+++M+WL L+
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 74/103 (71%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWRCYYSNTDA+IYVVDS DRDRIGIS R AILV+ ANKQDM+ M+
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
+E+ +LGL LKDR +QIFKTSA +G GL+++M+WL L+
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 71/103 (68%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWRCYYSNTDA+IYVVDS DRDRIGIS R AILV+ ANKQD + +
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
+E +LGL LKDR +QIFKTSA +G GL+++ +WL L+
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLK 168
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWRCY+S+TDA+IYVVDS+DRDR+G++ R ++L+I ANKQD+ + S
Sbjct: 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LG+ ++ +RT+ I K+S+K G+GL + MDWL L++
Sbjct: 141 EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 66/104 (63%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ S RDA+L++ ANKQDM N M
Sbjct: 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP 147
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
V+E+ LGL++L+ RT+ + T A +G GL D +DWLS+ L K
Sbjct: 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 68/105 (64%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWRCYY++T A+I+VVDS+D+DR+ + +DA L++ ANKQD +S
Sbjct: 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+EV + L L LKDR++ I +SA +GEG+ + +DWL + +++
Sbjct: 137 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 67/105 (63%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P W+ Y+ NT +I+VVDS+DR+RI RDA+L++ ANKQD+ N M+
Sbjct: 76 PLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMA 135
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
++E+ LGL++L++RT+ + T A +G GL + +DWLSN L K
Sbjct: 136 ISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ + RDA+L++ ANKQD+ N M+
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 136 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ + RDA+L++ ANKQD+ N M+
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ + RDA+L++ ANKQD+ N M+
Sbjct: 61 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 120
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 121 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ + RDA+L++ ANKQD+ N M+
Sbjct: 75 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 134
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 135 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY NT AII+VVDS+DRDRIG + R+AIL++ ANK D+ MS
Sbjct: 76 PLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMS 135
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
++EV LGL+ +K+R + + A G+GL + +DWL++ L+
Sbjct: 136 ISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DRDR+ + RDA+L++ ANKQD+ N M+
Sbjct: 79 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 138
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
AE+ LGL +L+ R + I T A GEGL + +DWLSN
Sbjct: 139 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 178
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ + RDA+L++ ANKQD+ N M+
Sbjct: 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 62/102 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YYSNTD +I+VVDS+DR+RI + +DAI+++ ANKQD+ N MS
Sbjct: 76 PLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMS 135
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
AEV L L +++R + I T A G+GL + DWL+ L
Sbjct: 136 AAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 63/103 (61%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
WR YY NT+ +I+V+DS+DR RIG + R+A+ ++ ANKQD+ MS A
Sbjct: 78 WRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAA 137
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
E+ LGL ++++R + I T A GEGL + ++WLSN L+
Sbjct: 138 EITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
WR YY NT+ +I+VVDS+DR RIG + R+A ++ ANKQD+ MS A
Sbjct: 78 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 137
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
E+ LGL ++++R + I T A GEGL + ++WLSN+L+
Sbjct: 138 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
WR YY NT+ +I+VVDS+DR RIG + R+A ++ ANKQD+ MS A
Sbjct: 61 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
E+ LGL ++++R + I T A GEGL + ++WLSN+L+
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 161
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
WR YY NT+ +I+VVDS+DR RIG + +A ++ ANKQD+ MS A
Sbjct: 78 WRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAA 137
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
E+ LGL ++++R + I T A GEGL + ++WLSN L+
Sbjct: 138 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLK 178
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W YYSNT+ II VVDS DR+R+ I+ R A ++I ANKQDMK CM+ A
Sbjct: 77 WNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAA 136
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ + L L ++KD + I A GEGL ++W+++
Sbjct: 137 EISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTS 174
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W YY+NT+ +I VVDS+DR+RI ++ R A L+I ANKQD+K CM+VA
Sbjct: 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
E+ + L L ++KD + I A GEGL ++W+ + L+ L
Sbjct: 137 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W YY+NT+ +I VVDS+DR+RI ++ R A L+I ANKQD+K CM+VA
Sbjct: 83 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 142
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
E+ + L L ++KD + I A GEGL ++W+ + L+
Sbjct: 143 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W YY+NT+ +I VVDS+DR+RI ++ R A L+I ANKQD+K CM+VA
Sbjct: 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 136
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
E+ + L L ++KD + I A GEGL ++W+ + L+
Sbjct: 137 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W YY+NT+ +I VVDS+DR+RI ++ R A L+I ANKQD+K CM+VA
Sbjct: 82 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA 141
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
E+ + L L ++KD + I A GEGL ++W+ + L
Sbjct: 142 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 440
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
E+ LGL ++DR + + + A G+GL + + WL++ + L
Sbjct: 441 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 61 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 120
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 121 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 160
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 131 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 118
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 132 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 118
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 62 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 121
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 122 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 161
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ + M
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 132 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI + RDAI++I ANKQD+ +
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXK 118
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 119 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWR Y+ NTD +IYV+DS+DR R + ++I ANKQD+
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+E+ L L ++DR +QI SA GEG+ D M+W+
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWR Y+ NTD +IYV+DS+DR R + ++I ANKQD+
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+E+ L L ++DR +QI SA GEG+ D M+W+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWR Y+ NTD +IYV+DS+DR R + ++I ANKQD+
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+E+ L L ++DR +QI SA GEG+ D M+W+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMS 60
PYWR Y+ NTD +IYV+DS+DR R + ++I ANKQD+
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+E+ L L ++DR +QI SA GEG+ D M+W+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXX--XXRDAILVILANKQDMKNCMS 60
W YY AII+V+DSSDR R+ ++ R ++ ANK D+++ ++
Sbjct: 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT 143
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
+V + L LEN+KD+ + I + A +GEGL + +DWL + +Q
Sbjct: 144 SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
YWR Y+ +TD +I+VVDS+DR R+ A L+I ANKQD+ +S
Sbjct: 61 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 120
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+ AL L++++ ++I SA GE L +DWL
Sbjct: 121 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
YWR Y+ +TD +I+VVDS+DR R+ A L+I ANKQD+ +S
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 137
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+ AL L++++ ++I SA GE L +DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
YWR Y+ +TD +I+VVDS+DR R+ A L+I ANKQD+ +S
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+ AL L++++ ++I SA GE L +DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
YWR Y+ +TD +I+VVDS+DR R A L+I ANKQD+ +S
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+ AL L++++ ++I SA GE L +DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSV 61
YWR Y+ +TD +I+VVDS+DR R+ A L+I ANKQD+ +S
Sbjct: 76 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS 135
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+ L L++++ + I SA GE L +DWL
Sbjct: 136 NAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAI-------LVILANKQDM 55
W YY N DA+I+VVDSSD R+ + R + + ANK D
Sbjct: 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139
Query: 56 KNCMSVAEVHRALGLENL-KDRTFQIFKTSAKEGEGLNDSMDWL 98
+ AE+ L L L D F IF ++ +G G+++ WL
Sbjct: 140 AGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W+ Y+ + I+++VD++D +R + +D VIL NK D N +S A
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121
Query: 63 EVHRALGLENLK-------DRTFQIFKTSAKEGEGLNDSMDWLS 99
E+ ALGL N R ++F S G ++ WLS
Sbjct: 122 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W+ Y+ + I+++VD++D +R + +D VIL NK D N +S A
Sbjct: 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 143
Query: 63 EVHRALGLENLK-------DRTFQIFKTSAKEGEGLNDSMDWLS 99
E+ ALGL N R ++F S G ++ WLS
Sbjct: 144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W Y +AI+Y++D++DR++I S + +++L NK+D+ N +
Sbjct: 84 WERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEK 143
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
++ + L ++DR + S KE + ++ ++ WL
Sbjct: 144 QLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W Y AI+Y+VD++D+++I S + +++L NK+D+ +
Sbjct: 84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK 143
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
E+ + L ++DR + S KE + ++ ++ WL
Sbjct: 144 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W Y AI+Y+VD++D+++I S + +++L NK+D+ +
Sbjct: 93 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK 152
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
E+ + L ++DR + S KE + ++ ++ WL
Sbjct: 153 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W+ Y + I+++VD +D R+ S + ++IL NK D + +S
Sbjct: 96 WKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEE 155
Query: 63 EVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
++ G L+ L R ++F S + +G + WLS
Sbjct: 156 KLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 204
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W+ Y + I+++VD +D +R+ S + ++IL NK D +S
Sbjct: 83 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE 142
Query: 63 EVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
+ G L+ L R ++F S + +G + W++
Sbjct: 143 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 192
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W+ Y + I+++VD +D +R+ S + ++IL NK D +S
Sbjct: 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE 145
Query: 63 EVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
+ G L+ L R ++F S + +G + W++
Sbjct: 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVA 62
W+ Y + I+++VD +D +R+ S + ++IL NK D +S
Sbjct: 77 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE 136
Query: 63 EVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
+ G L+ L R ++F S + +G + W++
Sbjct: 137 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 186
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVAEVH 65
YY N A + V D + I +D I+ ++ NK D +V
Sbjct: 72 YYRNAQAALVVYDVTKPQSF-IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVA 130
Query: 66 RALGLENLKDRTFQIFKTSAKEGEGLND 93
R G + +++ F+TSAK GE +ND
Sbjct: 131 REEGEKLAEEKGLLFFETSAKTGENVND 158
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 43 DAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86
+A +V+ ANK D+KN ++ + L +E LK + ++ F+ SAK
Sbjct: 117 EAPIVVCANKIDIKNRQKIS---KKLVMEVLKGKNYEYFEISAK 157
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 47 VILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
VI+ NK D+ N E+ R + + +D + + K SAK GEG+++ +D+L +
Sbjct: 114 VIVFNKIDLLNEEEKKELERWISI--YRDAGYDVLKVSAKTGEGIDELVDYLEGFI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 5 CYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVAEV 64
YY II V D +D +R + +A L+++ NK DM+ + A+
Sbjct: 75 AYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ 133
Query: 65 HRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
AL K+ ++SAK + +N+ L+ +Q+ +
Sbjct: 134 GEALA----KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 5 CYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVAEV 64
YY II V D +D +R + +A L+++ NK DM+ + A+
Sbjct: 71 AYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ 129
Query: 65 HRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
AL K+ ++SAK + +N+ L+ +Q+ +
Sbjct: 130 GEALA----KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 5 CYYSNTDAIIYVVDSSDRDRIGISXXXXXXXXXXXXXRDAILVILANKQDMKNCMSVAEV 64
YY II V D +D +R + +A L+++ NK DM+ + A+
Sbjct: 88 AYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ 146
Query: 65 HRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
AL K+ ++SAK + +N+ L+ +Q+ +
Sbjct: 147 GEALA----KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|4HSR|A Chain A, Crystal Structure Of A Class Iii Engineered
Cephalosporin Acylase
pdb|4HST|A Chain A, Crystal Structure Of A Double Mutant Of A Class Iii
Engineered Cephalosporin Acylase
Length = 229
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
A+ +RALG + +DR FQ+ T K L + +WL
Sbjct: 50 ADAYRALGFVHSQDRLFQMELTRRK---ALGRAAEWLG 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,379,814
Number of Sequences: 62578
Number of extensions: 59853
Number of successful extensions: 209
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 60
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)