Query psy12794
Match_columns 106
No_of_seqs 119 out of 1841
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 19:47:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 99.9 2.2E-23 4.9E-28 122.9 12.1 106 1-106 76-181 (181)
2 PF00025 Arf: ADP-ribosylation 99.9 4.4E-22 9.5E-27 116.8 12.3 102 1-102 73-175 (175)
3 smart00177 ARF ARF-like small 99.9 4.3E-22 9.3E-27 116.8 11.4 102 2-103 73-174 (175)
4 KOG0070|consensus 99.9 5.2E-22 1.1E-26 114.5 11.2 105 1-105 76-180 (181)
5 PTZ00133 ADP-ribosylation fact 99.9 6.6E-22 1.4E-26 116.7 11.9 105 2-106 77-181 (182)
6 cd04149 Arf6 Arf6 subfamily. 99.9 4.4E-22 9.6E-27 116.1 11.0 99 2-100 69-167 (168)
7 KOG0073|consensus 99.9 3.7E-22 8E-27 113.2 9.5 105 1-105 75-180 (185)
8 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.1E-22 1.5E-26 114.3 10.9 99 2-100 60-158 (159)
9 KOG0084|consensus 99.9 1.2E-21 2.6E-26 114.0 8.7 98 2-105 74-174 (205)
10 cd04121 Rab40 Rab40 subfamily. 99.9 3.6E-21 7.8E-26 114.2 10.4 96 2-104 71-168 (189)
11 cd04120 Rab12 Rab12 subfamily. 99.9 5.6E-21 1.2E-25 114.4 11.2 99 1-104 64-164 (202)
12 cd04158 ARD1 ARD1 subfamily. 99.9 1.5E-20 3.2E-25 109.7 12.4 102 2-103 59-161 (169)
13 KOG0071|consensus 99.9 6.4E-21 1.4E-25 105.9 9.5 104 1-104 76-179 (180)
14 KOG0072|consensus 99.9 4.7E-21 1E-25 106.9 8.4 105 1-105 77-181 (182)
15 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.8E-20 4E-25 109.2 11.1 100 1-100 58-166 (167)
16 cd04154 Arl2 Arl2 subfamily. 99.9 2.7E-20 5.9E-25 108.9 11.0 99 2-100 74-172 (173)
17 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.6E-20 7.8E-25 108.5 11.3 99 2-100 75-173 (174)
18 cd04151 Arl1 Arl1 subfamily. 99.8 6.9E-20 1.5E-24 105.7 11.2 99 2-100 59-157 (158)
19 KOG0075|consensus 99.8 6.2E-20 1.3E-24 102.7 10.5 103 1-103 80-182 (186)
20 smart00178 SAR Sar1p-like memb 99.8 7.7E-20 1.7E-24 108.1 11.0 100 2-101 77-183 (184)
21 smart00176 RAN Ran (Ras-relate 99.8 5E-20 1.1E-24 110.1 10.0 96 1-104 59-155 (200)
22 cd04157 Arl6 Arl6 subfamily. 99.8 9.3E-20 2E-24 105.2 10.8 99 2-100 61-161 (162)
23 PTZ00099 rab6; Provisional 99.8 9.1E-20 2E-24 107.1 10.9 98 1-104 44-143 (176)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 7.6E-20 1.7E-24 107.1 9.9 100 1-105 65-166 (172)
25 cd01875 RhoG RhoG subfamily. 99.8 1E-19 2.2E-24 108.1 10.3 97 1-104 66-178 (191)
26 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2E-19 4.4E-24 103.7 11.1 99 2-100 60-159 (160)
27 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.2E-19 6.9E-24 105.3 11.8 103 2-104 68-171 (183)
28 cd04133 Rop_like Rop subfamily 99.8 1.6E-19 3.4E-24 106.1 10.3 96 2-104 65-174 (176)
29 KOG0092|consensus 99.8 7.4E-20 1.6E-24 106.3 8.6 98 1-104 69-168 (200)
30 cd00879 Sar1 Sar1 subfamily. 99.8 5E-19 1.1E-23 104.8 11.7 101 2-102 79-190 (190)
31 KOG0078|consensus 99.8 2E-19 4.4E-24 105.9 9.4 98 2-105 77-176 (207)
32 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 4E-19 8.7E-24 106.2 11.0 100 1-104 65-169 (201)
33 cd04127 Rab27A Rab27a subfamil 99.8 4.8E-19 1E-23 104.0 10.4 100 2-106 79-180 (180)
34 cd04175 Rap1 Rap1 subgroup. T 99.8 4.2E-19 9.1E-24 102.9 10.0 98 1-103 64-163 (164)
35 cd00877 Ran Ran (Ras-related n 99.8 5.9E-19 1.3E-23 102.7 10.3 96 2-104 65-160 (166)
36 cd04122 Rab14 Rab14 subfamily. 99.8 7.8E-19 1.7E-23 102.0 10.7 97 2-104 67-165 (166)
37 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 7.1E-19 1.5E-23 102.2 10.1 98 1-100 59-163 (164)
38 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 7.2E-19 1.6E-23 103.8 10.0 95 2-103 69-180 (182)
39 cd04103 Centaurin_gamma Centau 99.8 5.7E-19 1.2E-23 102.1 8.8 94 4-101 60-157 (158)
40 PLN03071 GTP-binding nuclear p 99.8 8.4E-19 1.8E-23 106.2 9.8 96 1-104 77-173 (219)
41 cd04138 H_N_K_Ras_like H-Ras/N 99.8 6.5E-19 1.4E-23 101.5 8.9 97 1-102 64-161 (162)
42 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.3E-18 5E-23 99.2 11.1 99 2-100 59-157 (158)
43 KOG0094|consensus 99.8 4.8E-19 1E-23 103.3 7.9 101 1-104 86-186 (221)
44 cd04126 Rab20 Rab20 subfamily. 99.8 1.9E-18 4.1E-23 104.6 10.9 101 2-103 60-190 (220)
45 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2E-18 4.4E-23 100.2 10.6 99 2-100 66-166 (167)
46 cd04136 Rap_like Rap-like subf 99.8 1.5E-18 3.3E-23 100.3 9.9 97 1-102 64-162 (163)
47 cd04176 Rap2 Rap2 subgroup. T 99.8 9E-19 2E-23 101.4 9.0 97 1-102 64-162 (163)
48 PTZ00369 Ras-like protein; Pro 99.8 2.1E-18 4.6E-23 102.3 10.5 99 1-104 68-168 (189)
49 cd01871 Rac1_like Rac1-like su 99.8 1.3E-18 2.8E-23 102.0 9.3 94 2-101 65-173 (174)
50 cd04111 Rab39 Rab39 subfamily. 99.8 2.3E-18 4.9E-23 103.8 10.5 99 2-105 68-168 (211)
51 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.9E-18 6.2E-23 104.5 10.6 96 2-104 77-189 (232)
52 cd01873 RhoBTB RhoBTB subfamil 99.8 1.7E-18 3.6E-23 103.2 9.2 91 4-101 82-194 (195)
53 cd04144 Ras2 Ras2 subfamily. 99.8 3.7E-18 8E-23 101.3 10.2 98 2-104 63-164 (190)
54 cd01874 Cdc42 Cdc42 subfamily. 99.8 3E-18 6.4E-23 100.6 9.6 95 2-102 65-174 (175)
55 cd04109 Rab28 Rab28 subfamily. 99.8 2.9E-18 6.2E-23 103.6 9.6 97 2-103 66-166 (215)
56 cd01867 Rab8_Rab10_Rab13_like 99.8 7E-18 1.5E-22 98.1 10.7 97 2-104 68-166 (167)
57 cd04131 Rnd Rnd subfamily. Th 99.8 4.9E-18 1.1E-22 100.0 10.0 95 2-103 65-176 (178)
58 KOG0076|consensus 99.8 2.8E-19 6.1E-24 102.5 4.5 104 1-104 84-188 (197)
59 cd04134 Rho3 Rho3 subfamily. 99.8 4.3E-18 9.3E-23 101.0 9.8 96 2-103 64-174 (189)
60 cd04145 M_R_Ras_like M-Ras/R-R 99.8 4.3E-18 9.4E-23 98.4 9.6 96 2-102 66-163 (164)
61 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.5E-18 7.6E-23 100.9 9.2 95 2-103 65-166 (182)
62 cd01865 Rab3 Rab3 subfamily. 99.8 7.9E-18 1.7E-22 97.7 10.5 97 2-104 66-164 (165)
63 smart00173 RAS Ras subfamily o 99.8 4.3E-18 9.2E-23 98.6 9.1 98 2-104 64-163 (164)
64 KOG0093|consensus 99.8 1.8E-18 3.9E-23 97.0 7.1 96 4-105 88-185 (193)
65 cd04117 Rab15 Rab15 subfamily. 99.8 5E-18 1.1E-22 98.3 9.3 94 2-101 65-160 (161)
66 cd04119 RJL RJL (RabJ-Like) su 99.8 1.1E-17 2.3E-22 96.9 10.6 97 2-103 65-167 (168)
67 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 7.9E-18 1.7E-22 98.4 9.9 98 2-104 65-166 (170)
68 KOG0098|consensus 99.8 2.9E-18 6.3E-23 99.4 7.4 97 2-104 71-169 (216)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.5E-17 3.3E-22 96.5 10.5 97 2-104 67-165 (166)
70 cd04143 Rhes_like Rhes_like su 99.8 1.7E-17 3.7E-22 102.0 11.0 97 2-102 64-170 (247)
71 cd04155 Arl3 Arl3 subfamily. 99.8 2.3E-17 5.1E-22 96.2 11.0 99 2-100 74-172 (173)
72 cd04159 Arl10_like Arl10-like 99.8 3.6E-17 7.7E-22 93.7 11.3 99 2-100 60-158 (159)
73 cd04142 RRP22 RRP22 subfamily. 99.8 2.2E-17 4.7E-22 98.7 10.6 96 5-104 76-175 (198)
74 cd04116 Rab9 Rab9 subfamily. 99.8 1.9E-17 4.2E-22 96.4 10.1 96 2-101 70-169 (170)
75 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 2.7E-17 5.8E-22 99.7 10.7 97 2-104 65-177 (222)
76 cd04112 Rab26 Rab26 subfamily. 99.8 3.3E-17 7.1E-22 97.3 10.6 97 2-104 66-164 (191)
77 cd04124 RabL2 RabL2 subfamily. 99.8 2.8E-17 6E-22 95.2 10.1 97 1-105 64-160 (161)
78 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.3E-17 2.9E-22 97.3 8.7 97 2-103 68-169 (170)
79 KOG0394|consensus 99.7 2.2E-17 4.7E-22 95.6 9.0 97 3-103 75-178 (210)
80 cd04110 Rab35 Rab35 subfamily. 99.7 4.2E-17 9.1E-22 97.5 10.7 96 2-104 71-168 (199)
81 smart00174 RHO Rho (Ras homolo 99.7 3E-17 6.5E-22 95.9 9.7 96 2-104 62-173 (174)
82 cd04125 RabA_like RabA-like su 99.7 3.1E-17 6.7E-22 97.1 9.7 98 2-105 65-164 (188)
83 KOG0088|consensus 99.7 8.2E-18 1.8E-22 95.5 6.6 96 3-104 79-176 (218)
84 cd04140 ARHI_like ARHI subfami 99.7 2.1E-17 4.6E-22 96.0 8.4 95 2-101 65-163 (165)
85 cd01868 Rab11_like Rab11-like. 99.7 6.7E-17 1.4E-21 93.7 10.5 95 2-102 68-164 (165)
86 cd04132 Rho4_like Rho4-like su 99.7 5.3E-17 1.1E-21 96.0 10.1 96 2-104 65-168 (187)
87 cd01863 Rab18 Rab18 subfamily. 99.7 3.6E-17 7.8E-22 94.4 9.2 95 2-101 65-160 (161)
88 cd01864 Rab19 Rab19 subfamily. 99.7 6.3E-17 1.4E-21 93.9 10.1 95 2-101 68-164 (165)
89 PLN03108 Rab family protein; P 99.7 8.4E-17 1.8E-21 96.9 10.6 97 2-104 71-169 (210)
90 cd01862 Rab7 Rab7 subfamily. 99.7 1.3E-16 2.8E-21 92.9 11.1 100 2-105 65-169 (172)
91 cd01866 Rab2 Rab2 subfamily. 99.7 1.2E-16 2.5E-21 93.1 10.8 97 2-104 69-167 (168)
92 cd04147 Ras_dva Ras-dva subfam 99.7 8.2E-17 1.8E-21 96.1 10.4 98 2-103 63-163 (198)
93 KOG0080|consensus 99.7 3.1E-18 6.7E-23 97.3 3.9 98 2-104 76-175 (209)
94 KOG0074|consensus 99.7 7.5E-18 1.6E-22 94.0 5.1 102 1-102 77-178 (185)
95 smart00175 RAB Rab subfamily o 99.7 1.5E-16 3.3E-21 91.9 10.6 98 2-105 65-164 (164)
96 cd04106 Rab23_lke Rab23-like s 99.7 1E-16 2.2E-21 92.5 9.7 93 2-101 67-161 (162)
97 cd04101 RabL4 RabL4 (Rab-like4 99.7 8.4E-17 1.8E-21 93.1 9.3 94 2-102 68-163 (164)
98 PLN03110 Rab GTPase; Provision 99.7 7.4E-17 1.6E-21 97.5 9.3 97 2-104 77-175 (216)
99 cd01892 Miro2 Miro2 subfamily. 99.7 1.4E-16 3.1E-21 92.9 10.2 93 2-104 70-167 (169)
100 cd04113 Rab4 Rab4 subfamily. 99.7 1.5E-16 3.3E-21 91.9 9.9 94 2-101 65-160 (161)
101 cd04177 RSR1 RSR1 subgroup. R 99.7 2E-16 4.4E-21 92.1 10.4 99 1-103 64-164 (168)
102 cd04146 RERG_RasL11_like RERG/ 99.7 1.4E-16 3.1E-21 92.4 9.6 97 2-103 64-164 (165)
103 cd04139 RalA_RalB RalA/RalB su 99.7 1.3E-16 2.8E-21 92.1 9.4 98 2-104 64-163 (164)
104 KOG0091|consensus 99.7 1.2E-16 2.7E-21 91.1 8.9 98 2-104 74-174 (213)
105 cd01860 Rab5_related Rab5-rela 99.7 2.9E-16 6.3E-21 90.7 10.6 95 2-102 66-162 (163)
106 cd01861 Rab6 Rab6 subfamily. 99.7 1.3E-16 2.9E-21 92.0 8.8 94 2-101 65-160 (161)
107 cd04135 Tc10 TC10 subfamily. 99.7 2E-16 4.3E-21 92.4 9.6 96 2-102 64-173 (174)
108 cd04123 Rab21 Rab21 subfamily. 99.7 3.6E-16 7.8E-21 90.0 10.5 95 2-102 65-161 (162)
109 KOG0087|consensus 99.7 1E-16 2.2E-21 94.6 8.1 96 3-104 80-177 (222)
110 cd04118 Rab24 Rab24 subfamily. 99.7 5.6E-16 1.2E-20 92.0 10.9 96 2-104 66-167 (193)
111 PF00071 Ras: Ras family; Int 99.7 2.5E-16 5.4E-21 91.0 9.2 96 2-103 64-161 (162)
112 cd04130 Wrch_1 Wrch-1 subfamil 99.7 2.2E-16 4.7E-21 92.4 8.9 93 2-100 64-171 (173)
113 cd04148 RGK RGK subfamily. Th 99.7 2.5E-16 5.5E-21 95.5 9.3 94 5-103 67-163 (221)
114 KOG0395|consensus 99.7 5.2E-16 1.1E-20 92.5 10.4 98 2-104 67-166 (196)
115 KOG0079|consensus 99.7 2.3E-16 5E-21 88.7 8.1 94 3-103 74-169 (198)
116 PLN03118 Rab family protein; P 99.7 8.3E-16 1.8E-20 92.6 10.8 97 2-103 78-177 (211)
117 cd01893 Miro1 Miro1 subfamily. 99.7 2.5E-16 5.5E-21 91.5 7.4 98 2-104 63-165 (166)
118 KOG0081|consensus 99.7 2.9E-16 6.2E-21 89.3 7.0 98 3-105 84-183 (219)
119 cd04137 RheB Rheb (Ras Homolog 99.7 1.4E-15 3.1E-20 89.3 10.0 98 2-104 65-164 (180)
120 KOG0086|consensus 99.7 1.5E-15 3.3E-20 85.9 8.9 98 2-105 74-173 (214)
121 cd01870 RhoA_like RhoA-like su 99.6 3.2E-15 6.8E-20 87.4 9.7 95 2-102 65-174 (175)
122 cd00876 Ras Ras family. The R 99.6 1.6E-15 3.4E-20 87.2 8.3 96 2-102 63-160 (160)
123 KOG0083|consensus 99.6 1.4E-16 3.1E-21 88.2 3.0 94 3-105 64-162 (192)
124 cd04114 Rab30 Rab30 subfamily. 99.6 4.4E-15 9.6E-20 86.3 9.5 96 2-102 72-168 (169)
125 cd00154 Rab Rab family. Rab G 99.6 4.6E-15 1E-19 84.8 9.2 92 2-99 65-158 (159)
126 cd04129 Rho2 Rho2 subfamily. 99.6 6.7E-15 1.4E-19 87.2 10.0 95 3-103 66-173 (187)
127 cd00157 Rho Rho (Ras homology) 99.6 5.4E-15 1.2E-19 86.0 9.0 93 3-100 65-170 (171)
128 PTZ00132 GTP-binding nuclear p 99.6 3E-14 6.5E-19 86.0 10.1 96 2-104 74-169 (215)
129 KOG0095|consensus 99.6 3.6E-15 7.8E-20 84.1 5.5 98 2-104 72-170 (213)
130 cd01898 Obg Obg subfamily. Th 99.6 2.1E-14 4.6E-19 83.5 9.0 91 7-101 76-169 (170)
131 KOG0097|consensus 99.6 4.1E-14 8.8E-19 79.3 9.1 96 3-104 77-174 (215)
132 TIGR00157 ribosome small subun 99.6 2.3E-14 5E-19 88.2 8.6 90 2-100 29-120 (245)
133 PRK12299 obgE GTPase CgtA; Rev 99.6 4E-14 8.7E-19 90.4 9.7 95 5-104 232-329 (335)
134 cd01890 LepA LepA subfamily. 99.6 2.7E-14 5.8E-19 83.7 8.3 92 2-103 83-177 (179)
135 TIGR02729 Obg_CgtA Obg family 99.5 8.8E-14 1.9E-18 88.7 8.6 93 6-102 232-328 (329)
136 cd01897 NOG NOG1 is a nucleola 99.5 1.5E-13 3.3E-18 79.8 8.7 86 10-102 80-167 (168)
137 TIGR02528 EutP ethanolamine ut 99.5 8.2E-14 1.8E-18 79.0 6.9 82 6-99 59-141 (142)
138 PRK03003 GTP-binding protein D 99.5 3.8E-13 8.2E-18 89.5 9.4 93 6-103 290-382 (472)
139 KOG0077|consensus 99.5 8.1E-14 1.8E-18 79.8 5.1 101 2-102 80-192 (193)
140 cd01878 HflX HflX subfamily. 99.5 4.6E-13 1E-17 80.2 8.3 87 7-102 118-204 (204)
141 cd01879 FeoB Ferrous iron tran 99.5 6.9E-13 1.5E-17 76.1 8.1 89 3-102 66-156 (158)
142 TIGR03594 GTPase_EngA ribosome 99.5 6.7E-13 1.5E-17 87.3 8.9 94 5-103 250-344 (429)
143 TIGR00436 era GTP-binding prot 99.4 8.9E-13 1.9E-17 82.2 8.5 91 4-104 74-165 (270)
144 cd01859 MJ1464 MJ1464. This f 99.4 5.7E-13 1.2E-17 76.8 7.1 92 2-103 5-96 (156)
145 cd01881 Obg_like The Obg-like 99.4 6.3E-13 1.4E-17 77.5 7.3 94 5-101 70-175 (176)
146 TIGR03156 GTP_HflX GTP-binding 99.4 1.1E-12 2.3E-17 84.4 8.6 86 6-101 265-350 (351)
147 cd00881 GTP_translation_factor 99.4 4.1E-12 8.8E-17 74.8 10.5 97 2-103 78-187 (189)
148 cd00882 Ras_like_GTPase Ras-li 99.4 2.4E-12 5.1E-17 72.6 9.0 93 3-99 62-156 (157)
149 PRK15467 ethanolamine utilizat 99.4 1.1E-12 2.3E-17 76.0 7.7 88 6-104 61-148 (158)
150 PRK03003 GTP-binding protein D 99.4 1.9E-12 4.2E-17 86.2 9.5 90 3-104 111-200 (472)
151 PRK12296 obgE GTPase CgtA; Rev 99.4 1.7E-12 3.8E-17 86.3 8.4 93 6-103 233-340 (500)
152 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 3.6E-12 7.9E-17 73.9 8.8 96 2-103 66-166 (168)
153 KOG0393|consensus 99.4 2.2E-12 4.7E-17 76.4 7.4 101 2-103 69-179 (198)
154 PRK15494 era GTPase Era; Provi 99.4 2.9E-12 6.3E-17 82.2 8.5 89 6-103 128-216 (339)
155 cd01894 EngA1 EngA1 subfamily. 99.4 4.5E-12 9.8E-17 72.5 8.4 87 4-102 71-157 (157)
156 cd01895 EngA2 EngA2 subfamily. 99.4 6E-12 1.3E-16 73.0 8.9 91 6-101 81-173 (174)
157 cd04171 SelB SelB subfamily. 99.4 3.4E-12 7.4E-17 73.6 7.5 90 5-100 70-163 (164)
158 cd04102 RabL3 RabL3 (Rab-like3 99.4 2.1E-12 4.5E-17 77.5 6.6 56 2-57 70-143 (202)
159 PRK12297 obgE GTPase CgtA; Rev 99.4 9.2E-12 2E-16 81.7 9.7 91 6-103 233-327 (424)
160 PRK00093 GTP-binding protein D 99.4 7.1E-12 1.5E-16 82.7 8.7 92 6-102 252-343 (435)
161 cd01888 eIF2_gamma eIF2-gamma 99.4 4.3E-12 9.3E-17 76.2 7.1 94 5-103 102-199 (203)
162 PRK04213 GTP-binding protein; 99.4 9.8E-12 2.1E-16 74.3 8.4 99 2-104 79-193 (201)
163 cd00880 Era_like Era (E. coli 99.3 1.7E-11 3.6E-16 69.8 9.0 94 3-101 69-162 (163)
164 cd01855 YqeH YqeH. YqeH is an 99.3 3.5E-12 7.7E-17 75.8 6.0 95 2-103 27-125 (190)
165 PRK11058 GTPase HflX; Provisio 99.3 2.7E-11 5.9E-16 79.7 10.5 89 6-103 273-362 (426)
166 PRK12289 GTPase RsgA; Reviewed 99.3 1E-11 2.2E-16 79.9 8.3 88 4-100 84-172 (352)
167 PRK09518 bifunctional cytidyla 99.3 2E-11 4.3E-16 84.8 9.5 93 6-103 529-621 (712)
168 PRK05291 trmE tRNA modificatio 99.3 1.3E-11 2.8E-16 81.8 8.1 80 6-103 291-370 (449)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.3 3.1E-11 6.8E-16 69.0 8.6 80 6-102 77-156 (157)
170 KOG3883|consensus 99.3 5.4E-11 1.2E-15 67.6 9.1 96 4-103 79-175 (198)
171 TIGR01393 lepA GTP-binding pro 99.3 5.8E-11 1.3E-15 81.0 10.2 92 2-103 86-180 (595)
172 KOG4252|consensus 99.3 7.5E-12 1.6E-16 72.8 5.0 95 4-105 87-183 (246)
173 PRK00089 era GTPase Era; Revie 99.3 4E-11 8.7E-16 75.5 8.4 91 5-103 80-171 (292)
174 PRK12298 obgE GTPase CgtA; Rev 99.3 4E-11 8.7E-16 78.2 8.5 97 6-104 234-334 (390)
175 PRK00098 GTPase RsgA; Reviewed 99.3 1.5E-11 3.3E-16 77.7 6.3 83 8-99 79-163 (298)
176 COG2229 Predicted GTPase [Gene 99.3 1.1E-10 2.4E-15 68.0 9.2 93 2-101 84-176 (187)
177 TIGR00231 small_GTP small GTP- 99.3 6E-11 1.3E-15 67.5 8.2 93 2-99 66-160 (161)
178 cd01889 SelB_euk SelB subfamil 99.3 7E-11 1.5E-15 70.3 8.5 92 8-104 90-187 (192)
179 COG1100 GTPase SAR1 and relate 99.3 1E-10 2.2E-15 70.6 9.2 103 1-103 69-185 (219)
180 cd01858 NGP_1 NGP-1. Autoanti 99.3 7.8E-11 1.7E-15 68.1 8.2 90 6-102 5-94 (157)
181 cd01854 YjeQ_engC YjeQ/EngC. 99.3 4.7E-11 1E-15 75.1 7.8 85 7-100 76-161 (287)
182 cd04105 SR_beta Signal recogni 99.3 5.9E-11 1.3E-15 71.3 7.9 99 2-100 64-202 (203)
183 cd01891 TypA_BipA TypA (tyrosi 99.3 4.7E-11 1E-15 71.1 7.4 88 2-94 81-173 (194)
184 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1.4E-10 3.1E-15 76.7 9.8 84 5-104 278-361 (442)
185 cd04163 Era Era subfamily. Er 99.2 6.6E-11 1.4E-15 68.0 7.3 90 4-101 77-167 (168)
186 TIGR00437 feoB ferrous iron tr 99.2 7.6E-11 1.7E-15 80.4 7.1 89 3-102 64-154 (591)
187 PLN00023 GTP-binding protein; 99.2 6.4E-11 1.4E-15 75.2 6.3 57 1-57 98-165 (334)
188 PRK12288 GTPase RsgA; Reviewed 99.2 1.6E-10 3.4E-15 74.4 7.9 87 8-100 119-205 (347)
189 KOG1489|consensus 99.2 1.8E-10 3.9E-15 72.4 7.8 88 6-100 271-364 (366)
190 PF00009 GTP_EFTU: Elongation 99.2 2.3E-10 4.9E-15 67.9 8.0 93 6-103 90-187 (188)
191 PRK09518 bifunctional cytidyla 99.2 3.4E-10 7.3E-15 78.8 9.7 88 4-103 349-436 (712)
192 PRK05433 GTP-binding protein L 99.2 4.6E-10 1E-14 76.7 10.1 92 2-103 90-184 (600)
193 TIGR03594 GTPase_EngA ribosome 99.2 5E-10 1.1E-14 73.9 9.7 87 4-103 73-160 (429)
194 COG2262 HflX GTPases [General 99.2 6.3E-10 1.4E-14 71.9 9.3 88 7-103 269-356 (411)
195 CHL00189 infB translation init 99.1 6.8E-10 1.5E-14 77.1 9.4 95 2-102 311-409 (742)
196 smart00275 G_alpha G protein a 99.1 7.3E-10 1.6E-14 71.3 8.7 104 1-104 199-335 (342)
197 cd01849 YlqF_related_GTPase Yl 99.1 5.5E-10 1.2E-14 64.4 7.4 82 11-101 1-83 (155)
198 PRK00093 GTP-binding protein D 99.1 8.6E-10 1.9E-14 72.9 9.2 84 4-100 75-159 (435)
199 TIGR00487 IF-2 translation ini 99.1 8.9E-10 1.9E-14 75.2 8.8 93 2-100 151-247 (587)
200 PRK00454 engB GTP-binding prot 99.1 8.3E-10 1.8E-14 65.6 7.2 90 5-104 99-195 (196)
201 COG1159 Era GTPase [General fu 99.1 1.2E-09 2.6E-14 68.1 7.8 91 5-103 81-172 (298)
202 cd00066 G-alpha G protein alph 99.1 1.3E-09 2.9E-14 69.5 8.2 104 1-104 176-312 (317)
203 KOG4423|consensus 99.1 3.1E-10 6.7E-15 66.5 4.8 97 3-103 92-194 (229)
204 PF02421 FeoB_N: Ferrous iron 99.1 6.2E-10 1.3E-14 64.2 5.9 76 8-98 77-156 (156)
205 TIGR00491 aIF-2 translation in 99.1 1.3E-09 2.7E-14 74.4 8.1 96 2-102 85-215 (590)
206 PRK13768 GTPase; Provisional 99.1 8.2E-10 1.8E-14 68.4 6.7 93 10-103 129-247 (253)
207 TIGR03680 eif2g_arch translati 99.1 1.7E-09 3.8E-14 71.1 8.5 94 5-103 99-196 (406)
208 TIGR00475 selB selenocysteine- 99.0 9.9E-10 2.2E-14 75.0 7.4 93 5-103 69-166 (581)
209 PRK05306 infB translation init 99.0 2E-09 4.4E-14 75.3 9.0 93 2-100 353-449 (787)
210 KOG0096|consensus 99.0 2.4E-10 5.2E-15 67.0 3.3 93 4-103 77-169 (216)
211 COG1160 Predicted GTPases [Gen 99.0 4E-09 8.6E-14 69.1 9.2 92 6-102 257-350 (444)
212 cd01856 YlqF YlqF. Proteins o 99.0 1.9E-09 4.2E-14 63.1 7.1 86 5-102 15-100 (171)
213 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 9.8E-10 2.1E-14 62.5 5.6 77 6-90 8-84 (141)
214 cd04165 GTPBP1_like GTPBP1-lik 99.0 3.5E-09 7.5E-14 64.6 8.1 87 9-100 109-220 (224)
215 PRK04000 translation initiatio 99.0 3.9E-09 8.4E-14 69.5 8.2 89 9-103 108-201 (411)
216 COG1160 Predicted GTPases [Gen 99.0 5.6E-09 1.2E-13 68.4 8.6 85 6-102 80-164 (444)
217 TIGR03596 GTPase_YlqF ribosome 99.0 4.2E-09 9.2E-14 66.0 7.7 87 5-103 17-103 (276)
218 cd01883 EF1_alpha Eukaryotic e 99.0 2.3E-09 5E-14 65.1 6.1 84 6-92 97-194 (219)
219 TIGR03597 GTPase_YqeH ribosome 98.9 1.9E-09 4.2E-14 69.8 5.3 91 3-101 57-151 (360)
220 PRK09554 feoB ferrous iron tra 98.9 5.9E-09 1.3E-13 73.1 7.8 84 8-102 84-167 (772)
221 TIGR03598 GTPase_YsxC ribosome 98.9 1.9E-09 4E-14 63.5 4.6 76 9-92 100-179 (179)
222 PRK09866 hypothetical protein; 98.9 1.3E-08 2.8E-13 69.7 9.0 92 6-100 255-350 (741)
223 PF10662 PduV-EutP: Ethanolami 98.9 4.9E-09 1.1E-13 59.5 6.0 80 8-99 62-142 (143)
224 COG0536 Obg Predicted GTPase [ 98.9 6.8E-09 1.5E-13 66.0 7.1 95 6-104 234-334 (369)
225 TIGR00483 EF-1_alpha translati 98.9 3.4E-09 7.4E-14 70.1 5.9 86 7-94 106-198 (426)
226 KOG0462|consensus 98.9 1.7E-08 3.7E-13 67.6 8.8 88 6-103 145-235 (650)
227 cd01876 YihA_EngB The YihA (En 98.9 9.5E-09 2.1E-13 59.1 6.7 85 9-101 81-169 (170)
228 PF08477 Miro: Miro-like prote 98.9 4.2E-09 9.2E-14 57.9 4.6 50 3-54 67-119 (119)
229 PRK10512 selenocysteinyl-tRNA- 98.9 1.2E-08 2.5E-13 70.2 7.5 91 6-103 71-166 (614)
230 KOG0090|consensus 98.9 3.9E-08 8.4E-13 58.9 8.4 92 9-101 108-237 (238)
231 COG0481 LepA Membrane GTPase L 98.9 2.9E-08 6.4E-13 65.7 8.6 89 5-103 95-186 (603)
232 PRK09563 rbgA GTPase YlqF; Rev 98.9 1.7E-08 3.8E-13 63.6 7.3 87 5-103 20-106 (287)
233 cd01896 DRG The developmentall 98.9 4.1E-08 8.9E-13 60.2 8.7 49 44-102 177-225 (233)
234 COG0532 InfB Translation initi 98.8 6.1E-08 1.3E-12 64.6 9.8 89 8-102 77-169 (509)
235 COG0486 ThdF Predicted GTPase 98.8 3E-08 6.5E-13 65.3 8.2 84 6-103 293-376 (454)
236 PRK04004 translation initiatio 98.8 6.2E-08 1.4E-12 66.4 9.9 91 2-100 87-215 (586)
237 PRK10218 GTP-binding protein; 98.8 2.7E-08 5.9E-13 68.2 8.1 97 2-103 84-195 (607)
238 TIGR01394 TypA_BipA GTP-bindin 98.8 3.4E-08 7.4E-13 67.7 8.3 96 3-103 81-191 (594)
239 PRK12317 elongation factor 1-a 98.8 2.3E-08 4.9E-13 66.2 6.9 87 7-95 105-197 (425)
240 COG0218 Predicted GTPase [Gene 98.8 7.1E-08 1.5E-12 57.4 7.5 89 9-104 106-198 (200)
241 PRK14845 translation initiatio 98.8 1.2E-07 2.6E-12 68.3 9.9 92 5-101 545-671 (1049)
242 PRK01889 GTPase RsgA; Reviewed 98.8 1.2E-07 2.7E-12 61.5 9.0 84 7-99 110-193 (356)
243 cd04168 TetM_like Tet(M)-like 98.8 1.4E-07 3E-12 58.1 8.7 96 3-103 81-235 (237)
244 KOG1707|consensus 98.8 9.2E-09 2E-13 69.1 3.7 95 4-102 74-174 (625)
245 PTZ00327 eukaryotic translatio 98.7 8.3E-08 1.8E-12 64.0 7.4 91 7-103 138-233 (460)
246 cd04166 CysN_ATPS CysN_ATPS su 98.7 2.6E-07 5.6E-12 55.8 8.1 85 5-93 96-184 (208)
247 cd01884 EF_Tu EF-Tu subfamily. 98.6 5.1E-07 1.1E-11 54.1 8.7 80 7-91 86-171 (195)
248 TIGR00101 ureG urease accessor 98.6 2.3E-07 5E-12 55.7 7.1 82 10-103 113-196 (199)
249 KOG1145|consensus 98.6 1.3E-06 2.8E-11 59.0 10.4 87 9-101 224-314 (683)
250 PRK13796 GTPase YqeH; Provisio 98.6 1.2E-07 2.6E-12 61.7 5.5 87 8-102 67-158 (365)
251 KOG1673|consensus 98.6 2.3E-07 5.1E-12 53.2 5.4 96 4-102 87-185 (205)
252 PF09439 SRPRB: Signal recogni 98.5 2.1E-07 4.6E-12 54.9 4.9 57 6-62 72-131 (181)
253 PRK12736 elongation factor Tu; 98.5 1.1E-06 2.3E-11 57.9 8.3 91 7-102 96-200 (394)
254 KOG1423|consensus 98.5 9.7E-07 2.1E-11 55.9 7.5 94 5-104 151-272 (379)
255 TIGR00073 hypB hydrogenase acc 98.5 3.7E-07 8.1E-12 55.0 5.4 57 43-102 148-206 (207)
256 KOG0082|consensus 98.5 2.3E-06 4.9E-11 55.2 8.8 103 2-104 211-345 (354)
257 PRK13351 elongation factor G; 98.4 2.9E-06 6.2E-11 59.4 9.1 50 3-57 90-139 (687)
258 COG0370 FeoB Fe2+ transport sy 98.4 1.5E-06 3.2E-11 59.8 7.3 80 9-103 81-164 (653)
259 COG4917 EutP Ethanolamine util 98.4 1.1E-06 2.4E-11 48.8 5.3 83 7-101 62-144 (148)
260 cd04169 RF3 RF3 subfamily. Pe 98.4 1.3E-05 2.8E-10 50.3 10.5 50 4-58 89-138 (267)
261 PRK12735 elongation factor Tu; 98.4 5.3E-06 1.1E-10 54.7 8.5 91 7-102 96-202 (396)
262 PRK12740 elongation factor G; 98.4 9.2E-06 2E-10 56.8 10.0 50 3-57 77-126 (668)
263 PLN00043 elongation factor 1-a 98.3 5.3E-06 1.2E-10 55.5 7.9 83 6-93 105-203 (447)
264 PRK00741 prfC peptide chain re 98.3 2.1E-05 4.6E-10 53.6 10.8 49 4-57 97-145 (526)
265 PF00503 G-alpha: G-protein al 98.3 1.8E-06 3.8E-11 56.7 5.5 101 2-102 252-389 (389)
266 PRK09435 membrane ATPase/prote 98.3 4.6E-06 9.9E-11 53.7 7.1 88 7-103 167-260 (332)
267 TIGR00485 EF-Tu translation el 98.3 9.5E-06 2.1E-10 53.5 8.5 77 8-89 97-179 (394)
268 COG1163 DRG Predicted GTPase [ 98.3 1.8E-05 3.8E-10 50.6 9.1 49 44-102 240-288 (365)
269 cd01886 EF-G Elongation factor 98.3 1.4E-05 3E-10 50.2 8.6 62 3-69 81-145 (270)
270 PRK00049 elongation factor Tu; 98.3 1.2E-05 2.5E-10 53.1 8.4 90 7-101 96-201 (396)
271 COG1084 Predicted GTPase [Gene 98.3 8.8E-06 1.9E-10 51.9 7.4 86 10-102 248-335 (346)
272 TIGR00750 lao LAO/AO transport 98.3 9.3E-06 2E-10 51.7 7.7 87 7-102 145-237 (300)
273 CHL00071 tufA elongation facto 98.2 7.4E-06 1.6E-10 54.2 7.3 79 7-90 96-180 (409)
274 COG1162 Predicted GTPases [Gen 98.2 1.6E-05 3.4E-10 50.4 8.2 87 6-101 76-165 (301)
275 TIGR02034 CysN sulfate adenyly 98.2 1.3E-05 2.9E-10 53.0 7.8 83 7-93 101-187 (406)
276 PF06858 NOG1: Nucleolar GTP-b 98.2 3.3E-06 7.1E-11 40.5 3.3 43 10-54 14-58 (58)
277 PTZ00141 elongation factor 1- 98.2 2E-05 4.2E-10 52.8 8.0 83 7-93 106-203 (446)
278 KOG1424|consensus 98.2 4.5E-06 9.7E-11 56.0 4.8 78 2-87 164-244 (562)
279 PRK05124 cysN sulfate adenylyl 98.1 4.7E-06 1E-10 56.1 4.2 84 7-94 128-216 (474)
280 KOG1144|consensus 98.1 1.7E-05 3.6E-10 55.6 6.6 93 7-104 561-688 (1064)
281 COG5257 GCD11 Translation init 98.1 1.9E-05 4.2E-10 50.5 6.3 88 11-103 111-202 (415)
282 cd04178 Nucleostemin_like Nucl 98.1 2E-05 4.3E-10 46.4 6.1 43 11-58 1-45 (172)
283 PRK12739 elongation factor G; 98.1 5.2E-05 1.1E-09 53.4 9.1 50 3-57 90-139 (691)
284 TIGR00484 EF-G translation elo 98.1 4.1E-05 8.8E-10 53.9 8.5 51 3-58 92-142 (689)
285 cd04104 p47_IIGP_like p47 (47- 98.1 1.5E-05 3.3E-10 47.7 5.4 91 7-104 78-185 (197)
286 PRK05506 bifunctional sulfate 98.0 1.9E-05 4.1E-10 55.0 6.4 83 7-93 125-211 (632)
287 TIGR00503 prfC peptide chain r 98.0 8.9E-05 1.9E-09 50.7 9.3 48 5-57 99-146 (527)
288 PLN03127 Elongation factor Tu; 98.0 5.7E-05 1.2E-09 50.7 8.2 90 8-102 146-251 (447)
289 KOG1532|consensus 98.0 3.3E-05 7.1E-10 48.6 6.5 90 11-103 149-264 (366)
290 cd01885 EF2 EF2 (for archaea a 98.0 2.4E-05 5.2E-10 47.9 5.6 48 4-56 91-138 (222)
291 KOG1490|consensus 98.0 6.2E-06 1.3E-10 55.4 3.2 86 12-103 250-341 (620)
292 PF03029 ATP_bind_1: Conserved 98.0 3.1E-05 6.6E-10 47.9 5.4 88 10-102 123-236 (238)
293 COG3276 SelB Selenocysteine-sp 97.9 0.00011 2.5E-09 48.6 8.1 89 9-102 73-161 (447)
294 PRK10463 hydrogenase nickel in 97.9 1.9E-05 4.1E-10 50.0 3.9 57 42-101 229-287 (290)
295 COG5256 TEF1 Translation elong 97.9 5.6E-05 1.2E-09 49.7 6.0 84 8-93 107-201 (428)
296 cd04167 Snu114p Snu114p subfam 97.9 6E-05 1.3E-09 45.6 5.7 49 3-56 88-136 (213)
297 PRK00007 elongation factor G; 97.9 0.00025 5.3E-09 50.1 9.2 47 6-57 95-141 (693)
298 PLN03126 Elongation factor Tu; 97.8 0.00012 2.6E-09 49.6 7.0 78 7-89 165-248 (478)
299 cd04170 EF-G_bact Elongation f 97.8 0.00019 4.2E-09 45.0 6.9 51 3-58 81-131 (268)
300 COG0378 HypB Ni2+-binding GTPa 97.8 3E-05 6.4E-10 46.3 3.1 79 11-102 119-200 (202)
301 smart00010 small_GTPase Small 97.7 0.00018 3.9E-09 39.4 5.9 75 4-92 41-115 (124)
302 COG1161 Predicted GTPases [Gen 97.6 0.00017 3.8E-09 46.5 5.1 80 5-95 30-109 (322)
303 COG1217 TypA Predicted membran 97.6 0.00027 5.9E-09 47.5 5.9 93 6-103 88-195 (603)
304 PF03308 ArgK: ArgK protein; 97.6 7.1E-05 1.5E-09 46.6 3.1 86 8-102 141-229 (266)
305 KOG1707|consensus 97.6 0.00086 1.9E-08 46.1 8.2 85 8-103 494-583 (625)
306 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.00021 4.5E-09 43.8 4.9 77 7-90 101-183 (225)
307 COG2895 CysN GTPases - Sulfate 97.6 0.00032 6.9E-09 45.7 5.6 77 9-92 109-192 (431)
308 PF04670 Gtr1_RagA: Gtr1/RagA 97.5 0.00039 8.4E-09 42.9 4.9 96 4-103 71-176 (232)
309 KOG1191|consensus 97.4 0.0008 1.7E-08 45.4 6.0 98 6-103 345-450 (531)
310 COG1703 ArgK Putative periplas 97.4 0.0028 6E-08 40.5 7.9 87 8-103 163-254 (323)
311 cd01899 Ygr210 Ygr210 subfamil 97.3 0.00048 1E-08 44.4 4.6 56 42-103 213-269 (318)
312 KOG2423|consensus 97.3 0.0041 8.8E-08 41.4 8.3 90 2-100 203-297 (572)
313 KOG0458|consensus 97.2 0.00083 1.8E-08 46.1 5.0 83 9-93 278-372 (603)
314 KOG2484|consensus 97.0 0.0023 5E-08 42.2 5.4 59 6-69 143-203 (435)
315 KOG0410|consensus 97.0 0.00086 1.9E-08 43.3 3.3 83 7-103 255-341 (410)
316 KOG0705|consensus 97.0 0.001 2.2E-08 45.7 3.4 95 5-103 91-189 (749)
317 PF01926 MMR_HSR1: 50S ribosom 97.0 0.0041 8.8E-08 33.9 5.3 40 7-52 77-116 (116)
318 KOG0461|consensus 96.8 0.0083 1.8E-07 39.4 6.2 86 10-102 94-192 (522)
319 KOG0085|consensus 96.7 0.0016 3.4E-08 40.4 2.5 102 2-103 215-349 (359)
320 cd01852 AIG1 AIG1 (avrRpt2-ind 96.6 0.027 5.8E-07 33.7 7.4 92 7-104 81-185 (196)
321 smart00053 DYNc Dynamin, GTPas 96.6 0.029 6.4E-07 34.9 7.6 52 3-58 155-207 (240)
322 KOG0099|consensus 96.6 0.0083 1.8E-07 38.0 5.0 55 2-56 218-282 (379)
323 PRK09602 translation-associate 96.5 0.0056 1.2E-07 40.7 4.2 54 42-102 216-270 (396)
324 COG5258 GTPBP1 GTPase [General 96.4 0.029 6.3E-07 37.4 7.0 57 42-98 254-334 (527)
325 PF00350 Dynamin_N: Dynamin fa 96.4 0.016 3.4E-07 33.6 5.3 48 2-53 121-168 (168)
326 TIGR00490 aEF-2 translation el 96.3 0.01 2.2E-07 42.4 4.7 48 4-56 104-151 (720)
327 COG4108 PrfC Peptide chain rel 96.3 0.066 1.4E-06 36.3 8.0 56 9-69 104-162 (528)
328 PTZ00416 elongation factor 2; 96.1 0.013 2.7E-07 42.6 4.7 46 6-56 112-157 (836)
329 KOG0466|consensus 96.1 0.014 3.1E-07 37.7 4.3 58 44-103 180-241 (466)
330 cd01850 CDC_Septin CDC/Septin. 96.1 0.02 4.2E-07 36.4 4.9 44 9-57 114-157 (276)
331 COG0050 TufB GTPases - transla 96.1 0.034 7.3E-07 35.9 5.8 74 9-87 98-177 (394)
332 PLN00116 translation elongatio 95.7 0.027 5.9E-07 41.0 4.9 45 7-56 119-163 (843)
333 PF14331 ImcF-related_N: ImcF- 95.5 0.13 2.7E-06 32.6 6.8 48 9-57 25-83 (266)
334 KOG3905|consensus 95.3 0.027 5.9E-07 36.8 3.5 59 43-102 222-289 (473)
335 KOG0468|consensus 95.3 0.014 3.1E-07 41.3 2.3 45 6-55 217-261 (971)
336 KOG0447|consensus 95.2 0.34 7.3E-06 34.2 8.4 64 3-69 442-507 (980)
337 TIGR02836 spore_IV_A stage IV 95.0 0.25 5.5E-06 33.6 7.3 43 9-54 144-191 (492)
338 PF11111 CENP-M: Centromere pr 94.8 0.4 8.7E-06 28.5 7.1 90 8-103 63-153 (176)
339 PRK07560 elongation factor EF- 94.8 0.087 1.9E-06 37.9 5.1 47 5-56 106-152 (731)
340 KOG1143|consensus 94.8 0.2 4.3E-06 33.6 6.2 84 10-98 275-383 (591)
341 KOG2486|consensus 94.7 0.02 4.3E-07 36.5 1.5 84 12-100 222-313 (320)
342 COG0523 Putative GTPases (G3E 94.6 0.22 4.8E-06 32.5 6.1 68 9-85 116-184 (323)
343 KOG2485|consensus 94.5 0.17 3.7E-06 32.8 5.3 57 6-69 43-99 (335)
344 KOG0460|consensus 94.5 0.18 3.9E-06 33.3 5.5 74 9-86 140-218 (449)
345 COG3640 CooC CO dehydrogenase 94.3 0.14 3E-06 32.0 4.5 45 6-55 152-197 (255)
346 COG0480 FusA Translation elong 93.9 0.18 3.9E-06 36.2 5.0 60 5-69 95-157 (697)
347 KOG1954|consensus 93.9 0.24 5.3E-06 33.2 5.2 57 6-69 178-234 (532)
348 KOG0463|consensus 93.6 0.13 2.8E-06 34.5 3.7 56 43-98 273-353 (641)
349 KOG3886|consensus 93.2 0.79 1.7E-05 28.9 6.4 51 5-57 77-130 (295)
350 PF05783 DLIC: Dynein light in 92.9 0.2 4.3E-06 34.4 3.9 59 43-102 196-263 (472)
351 KOG0448|consensus 92.4 0.7 1.5E-05 33.2 6.0 51 2-57 225-275 (749)
352 COG3596 Predicted GTPase [Gene 92.3 1.3 2.8E-05 28.5 6.5 97 4-103 112-222 (296)
353 cd03112 CobW_like The function 91.4 0.34 7.4E-06 28.1 3.2 42 8-55 117-158 (158)
354 KOG1487|consensus 91.2 0.19 4E-06 32.1 2.0 79 5-102 202-280 (358)
355 COG1149 MinD superfamily P-loo 91.0 1.9 4.2E-05 27.6 6.4 46 6-56 182-227 (284)
356 cd04170 EF-G_bact Elongation f 90.6 0.41 9E-06 30.1 3.3 27 77-103 240-266 (268)
357 TIGR03348 VI_IcmF type VI secr 89.8 1.5 3.2E-05 33.7 6.0 49 8-57 200-257 (1169)
358 cd03110 Fer4_NifH_child This p 89.4 2.6 5.6E-05 24.7 5.9 47 6-57 111-157 (179)
359 COG4963 CpaE Flp pilus assembl 89.1 3.5 7.7E-05 27.6 6.7 66 4-71 234-299 (366)
360 PF02492 cobW: CobW/HypB/UreG, 88.8 0.56 1.2E-05 27.7 2.7 45 9-59 113-157 (178)
361 COG0012 Predicted GTPase, prob 88.1 1.1 2.5E-05 29.8 4.0 40 42-86 205-247 (372)
362 PTZ00258 GTP-binding protein; 87.8 0.76 1.7E-05 30.9 3.1 43 42-88 219-265 (390)
363 cd01886 EF-G Elongation factor 87.5 0.99 2.1E-05 28.7 3.4 28 76-103 241-268 (270)
364 PF11288 DUF3089: Protein of u 85.9 0.79 1.7E-05 28.1 2.2 51 2-53 48-104 (207)
365 PRK14974 cell division protein 85.8 6.4 0.00014 26.0 6.4 71 9-96 252-323 (336)
366 KOG0465|consensus 85.7 6.4 0.00014 28.4 6.6 49 5-58 123-171 (721)
367 KOG1486|consensus 85.6 4.4 9.6E-05 26.0 5.4 50 44-103 239-288 (364)
368 KOG0459|consensus 85.0 1.3 2.8E-05 30.1 3.0 55 42-96 216-279 (501)
369 PF08438 MMR_HSR1_C: GTPase of 85.0 0.58 1.2E-05 25.7 1.2 31 49-86 1-32 (109)
370 PRK13505 formate--tetrahydrofo 81.8 15 0.00034 26.1 7.2 57 42-103 371-429 (557)
371 KOG0467|consensus 81.3 4 8.7E-05 30.1 4.4 45 5-54 91-135 (887)
372 PF10087 DUF2325: Uncharacteri 81.1 6.3 0.00014 20.8 4.7 25 3-27 42-66 (97)
373 PF05049 IIGP: Interferon-indu 80.8 14 0.0003 25.0 6.5 88 7-103 112-218 (376)
374 TIGR02475 CobW cobalamin biosy 80.2 5.7 0.00012 26.3 4.6 23 46-68 176-198 (341)
375 PF03193 DUF258: Protein of un 79.9 2.9 6.3E-05 24.6 2.9 25 76-100 11-35 (161)
376 COG1908 FrhD Coenzyme F420-red 77.0 8.5 0.00018 21.6 4.0 59 43-104 54-123 (132)
377 PF09547 Spore_IV_A: Stage IV 75.1 20 0.00042 25.0 6.0 40 12-54 148-191 (492)
378 KOG4530|consensus 74.3 12 0.00025 22.3 4.2 50 2-53 79-128 (199)
379 TIGR00064 ftsY signal recognit 74.2 20 0.00044 22.9 7.0 71 10-97 191-262 (272)
380 PF00735 Septin: Septin; Inte 74.1 9.9 0.00022 24.4 4.4 44 9-57 113-156 (281)
381 PRK09601 GTP-binding protein Y 73.0 8.1 0.00017 25.9 3.9 40 42-86 198-240 (364)
382 KOG1249|consensus 71.9 8.2 0.00018 27.3 3.8 84 11-101 112-209 (572)
383 cd02038 FleN-like FleN is a me 71.8 16 0.00034 20.6 5.2 48 5-55 62-109 (139)
384 PRK11537 putative GTP-binding 71.6 8.1 0.00018 25.3 3.6 42 10-57 123-164 (318)
385 KOG4273|consensus 66.8 5.6 0.00012 25.5 2.1 42 11-56 80-122 (418)
386 PRK10416 signal recognition pa 66.0 35 0.00076 22.4 5.8 71 9-96 232-303 (318)
387 TIGR03566 FMN_reduc_MsuE FMN r 62.3 23 0.0005 20.7 4.1 47 5-52 64-110 (174)
388 PRK13556 azoreductase; Provisi 61.7 34 0.00073 20.8 4.9 47 6-52 86-144 (208)
389 PF03358 FMN_red: NADPH-depend 60.6 29 0.00062 19.6 5.1 49 4-52 65-115 (152)
390 cd01853 Toc34_like Toc34-like 60.0 27 0.00059 22.0 4.2 46 9-56 114-162 (249)
391 TIGR00991 3a0901s02IAP34 GTP-b 59.5 49 0.0011 21.9 5.9 46 9-56 118-166 (313)
392 PRK13660 hypothetical protein; 59.0 38 0.00082 20.5 5.4 15 7-21 127-141 (182)
393 cd03114 ArgK-like The function 58.8 33 0.00071 19.7 4.4 41 5-54 108-148 (148)
394 PF11185 DUF2971: Protein of u 58.8 11 0.00024 18.9 2.1 17 2-18 1-17 (90)
395 TIGR00484 EF-G translation elo 57.5 17 0.00037 26.5 3.4 28 76-103 252-279 (689)
396 PRK12727 flagellar biosynthesi 57.4 61 0.0013 23.4 5.8 39 12-57 460-498 (559)
397 PF05014 Nuc_deoxyrib_tr: Nucl 56.5 31 0.00066 18.6 5.7 44 6-55 58-101 (113)
398 TIGR03567 FMN_reduc_SsuE FMN r 56.5 31 0.00067 20.2 3.9 48 4-52 60-107 (171)
399 PRK10569 NAD(P)H-dependent FMN 55.3 34 0.00075 20.6 4.0 47 5-52 62-108 (191)
400 cd03111 CpaE_like This protein 55.2 31 0.00068 18.4 5.3 45 6-52 61-106 (106)
401 cd01900 YchF YchF subfamily. 54.7 10 0.00023 24.3 1.8 39 43-86 195-236 (274)
402 KOG2743|consensus 54.1 22 0.00048 23.6 3.1 21 47-67 215-235 (391)
403 PF13651 EcoRI_methylase: Aden 53.9 38 0.00083 22.6 4.2 50 6-69 132-181 (336)
404 COG0431 Predicted flavoprotein 52.3 29 0.00062 20.7 3.3 51 3-54 61-111 (184)
405 KOG3887|consensus 52.0 64 0.0014 20.9 8.8 97 6-105 98-204 (347)
406 COG3523 IcmF Type VI protein s 51.5 1.2E+02 0.0027 24.2 7.9 50 7-57 212-270 (1188)
407 PRK09739 hypothetical protein; 49.7 56 0.0012 19.6 5.0 49 5-53 75-130 (199)
408 COG1010 CobJ Precorrin-3B meth 49.5 67 0.0015 20.5 4.9 46 7-53 152-197 (249)
409 PRK00871 glutathione-regulated 49.3 56 0.0012 19.5 4.9 49 6-54 52-108 (176)
410 PF04548 AIG1: AIG1 family; I 49.3 28 0.0006 21.2 3.0 50 7-59 81-132 (212)
411 COG1512 Beta-propeller domains 48.7 73 0.0016 20.7 5.5 47 9-55 63-110 (271)
412 PRK13555 azoreductase; Provisi 47.9 64 0.0014 19.8 5.5 47 6-52 86-144 (208)
413 cd07393 MPP_DR1119 Deinococcus 46.7 69 0.0015 19.8 4.7 47 5-55 37-83 (232)
414 cd07379 MPP_239FB Homo sapiens 46.1 52 0.0011 18.2 4.4 44 8-55 18-62 (135)
415 PF07764 Omega_Repress: Omega 44.5 25 0.00055 17.2 1.8 17 84-100 44-60 (71)
416 KOG0469|consensus 44.2 21 0.00045 25.6 2.0 46 5-55 117-162 (842)
417 TIGR01007 eps_fam capsular exo 44.1 70 0.0015 19.1 6.2 46 7-56 148-193 (204)
418 PRK00170 azoreductase; Reviewe 43.7 70 0.0015 19.0 5.1 47 6-52 83-141 (201)
419 TIGR02690 resist_ArsH arsenica 43.7 80 0.0017 19.7 4.4 48 3-51 84-136 (219)
420 COG1358 RPL8A Ribosomal protei 43.5 36 0.00078 19.0 2.6 41 9-56 43-83 (116)
421 PF04034 DUF367: Domain of unk 42.8 46 0.001 18.9 2.9 37 14-55 24-60 (127)
422 PRK06242 flavodoxin; Provision 41.6 65 0.0014 18.1 3.8 44 7-53 41-84 (150)
423 cd07390 MPP_AQ1575 Aquifex aeo 40.2 76 0.0016 18.4 4.5 24 3-26 36-59 (168)
424 PF08309 LVIVD: LVIVD repeat; 38.5 17 0.00038 16.1 0.7 18 8-25 17-34 (42)
425 cd02036 MinD Bacterial cell di 38.1 80 0.0017 18.1 7.1 47 6-56 81-127 (179)
426 COG4502 5'(3')-deoxyribonucleo 37.9 86 0.0019 18.4 4.3 41 12-54 86-126 (180)
427 KOG2535|consensus 37.5 61 0.0013 22.1 3.3 38 59-96 303-340 (554)
428 cd03115 SRP The signal recogni 37.2 85 0.0018 18.1 5.7 42 9-57 112-153 (173)
429 TIGR01425 SRP54_euk signal rec 37.2 1.3E+02 0.0027 21.0 4.8 41 9-56 212-252 (429)
430 KOG1534|consensus 36.8 25 0.00054 22.2 1.4 28 42-69 163-190 (273)
431 COG4474 Uncharacterized protei 36.6 98 0.0021 18.7 5.0 21 7-27 127-147 (180)
432 PF04317 DUF463: YcjX-like fam 36.4 1.1E+02 0.0024 21.4 4.5 56 2-57 248-320 (443)
433 PF06319 DUF1052: Protein of u 36.4 48 0.0011 19.6 2.5 19 2-20 79-97 (157)
434 PF14606 Lipase_GDSL_3: GDSL-l 35.2 81 0.0018 19.0 3.4 46 4-50 52-100 (178)
435 PRK04930 glutathione-regulated 34.7 1.1E+02 0.0023 18.5 5.1 47 6-52 58-112 (184)
436 PF02662 FlpD: Methyl-viologen 34.5 70 0.0015 17.9 2.9 32 73-104 91-122 (124)
437 PF09827 CRISPR_Cas2: CRISPR a 33.9 44 0.00095 16.7 1.9 24 12-35 3-26 (78)
438 cd07388 MPP_Tt1561 Thermus the 33.9 1.2E+02 0.0026 18.9 4.4 44 8-55 30-74 (224)
439 PF06908 DUF1273: Protein of u 32.7 73 0.0016 19.1 2.9 14 7-20 127-140 (177)
440 PF07075 DUF1343: Protein of u 32.7 82 0.0018 21.4 3.4 42 6-49 75-117 (365)
441 TIGR03371 cellulose_yhjQ cellu 31.8 1.3E+02 0.0027 18.5 4.9 50 5-56 132-181 (246)
442 TIGR03677 rpl7ae 50S ribosomal 31.4 61 0.0013 17.9 2.3 14 42-55 68-81 (117)
443 TIGR03790 conserved hypothetic 31.3 1.6E+02 0.0035 19.6 4.7 22 81-102 35-56 (316)
444 COG0420 SbcD DNA repair exonuc 30.3 1.6E+02 0.0035 19.8 4.6 48 8-57 39-89 (390)
445 PF03641 Lysine_decarbox: Poss 29.9 1.1E+02 0.0024 17.2 4.9 44 6-52 50-93 (133)
446 PF03709 OKR_DC_1_N: Orn/Lys/A 29.9 1E+02 0.0022 16.8 4.2 43 8-53 35-77 (115)
447 PRK06756 flavodoxin; Provision 29.3 1.1E+02 0.0025 17.2 4.8 44 7-51 47-91 (148)
448 PF01656 CbiA: CobQ/CobB/MinD/ 28.9 1.2E+02 0.0027 17.5 3.9 51 4-56 111-161 (195)
449 cd03411 Ferrochelatase_N Ferro 28.7 1.3E+02 0.0027 17.5 4.0 33 13-45 2-34 (159)
450 PF00319 SRF-TF: SRF-type tran 28.7 66 0.0014 15.0 1.9 15 7-21 30-44 (51)
451 PF08103 Antimicrobial_8: Uper 28.1 42 0.00091 11.8 2.1 14 90-103 1-14 (17)
452 cd03363 TOPRIM_TopoIA_TopoI TO 27.7 1E+02 0.0022 17.2 2.8 49 44-96 73-121 (123)
453 PRK13695 putative NTPase; Prov 27.1 1.4E+02 0.003 17.4 8.1 49 42-103 125-173 (174)
454 PF02525 Flavodoxin_2: Flavodo 26.7 1.5E+02 0.0032 17.7 4.5 49 6-54 75-137 (199)
455 PF08468 MTS_N: Methyltransfer 26.7 1.4E+02 0.0031 17.4 5.4 42 8-54 68-109 (155)
456 PTZ00365 60S ribosomal protein 26.4 94 0.002 20.1 2.7 39 10-55 149-187 (266)
457 KOG3852|consensus 26.2 2.1E+02 0.0046 19.3 4.8 79 7-92 120-198 (426)
458 TIGR01968 minD_bact septum sit 26.1 1.7E+02 0.0036 18.0 5.5 47 5-55 129-175 (261)
459 PF12123 Amidase02_C: N-acetyl 26.0 35 0.00076 15.6 0.6 25 76-100 14-38 (45)
460 PF10438 Cyc-maltodext_C: Cycl 26.0 30 0.00064 17.8 0.4 28 42-69 19-46 (78)
461 PF00701 DHDPS: Dihydrodipicol 25.7 1.9E+02 0.0041 18.5 4.2 38 9-49 96-133 (289)
462 cd01458 vWA_ku Ku70/Ku80 N-ter 25.7 1.6E+02 0.0036 17.9 5.0 42 11-52 2-57 (218)
463 PF01268 FTHFS: Formate--tetra 25.5 2.2E+02 0.0047 20.8 4.5 56 42-102 370-427 (557)
464 PRK06995 flhF flagellar biosyn 24.8 2.6E+02 0.0057 19.9 5.0 37 13-56 368-404 (484)
465 PF13401 AAA_22: AAA domain; P 24.8 1.3E+02 0.0027 16.2 4.2 11 42-52 115-125 (131)
466 cd00477 FTHFS Formyltetrahydro 24.7 2.8E+02 0.006 20.1 6.2 59 42-103 355-413 (524)
467 smart00564 PQQ beta-propeller 24.2 64 0.0014 12.6 1.6 16 6-21 10-25 (33)
468 KOG3929|consensus 24.1 46 0.00099 21.8 1.1 13 43-55 190-202 (363)
469 TIGR00109 hemH ferrochelatase. 24.1 2.2E+02 0.0048 18.8 4.4 35 11-45 5-39 (322)
470 PTZ00222 60S ribosomal protein 24.0 89 0.0019 20.2 2.3 14 42-55 174-187 (263)
471 PRK07116 flavodoxin; Provision 23.8 1.6E+02 0.0034 17.0 7.5 59 7-69 74-132 (160)
472 cd02037 MRP-like MRP (Multiple 23.5 1.6E+02 0.0035 17.0 5.6 44 8-55 90-133 (169)
473 PRK13507 formate--tetrahydrofo 23.5 3.1E+02 0.0066 20.2 6.6 59 42-103 400-458 (587)
474 cd00120 MADS MADS: MCM1, Agamo 23.1 99 0.0021 14.9 1.9 15 7-21 37-51 (59)
475 COG2759 MIS1 Formyltetrahydrof 22.6 3E+02 0.0065 19.8 5.9 59 42-103 368-426 (554)
476 smart00432 MADS MADS domain. 22.4 99 0.0021 14.9 1.9 15 7-21 37-51 (59)
477 TIGR01753 flav_short flavodoxi 22.2 1.5E+02 0.0033 16.2 3.8 45 7-52 43-89 (140)
478 PLN02759 Formate--tetrahydrofo 21.8 2.2E+02 0.0047 21.1 4.0 60 42-103 449-508 (637)
479 PRK01355 azoreductase; Reviewe 21.6 2E+02 0.0043 17.3 5.6 32 5-36 73-104 (199)
480 PRK06703 flavodoxin; Provision 21.2 1.7E+02 0.0038 16.5 4.6 44 7-51 46-90 (151)
481 PF03569 Peptidase_C8: Peptida 21.2 2.1E+02 0.0045 17.3 4.2 43 7-53 111-153 (212)
482 PRK11148 cyclic 3',5'-adenosin 21.2 2.3E+02 0.005 18.0 3.9 43 9-55 55-97 (275)
483 CHL00175 minD septum-site dete 20.6 2.4E+02 0.0052 17.9 5.2 46 6-55 145-190 (281)
484 KOG3349|consensus 20.6 2.1E+02 0.0045 17.1 3.2 12 42-53 99-110 (170)
485 PRK04175 rpl7ae 50S ribosomal 20.4 1.3E+02 0.0027 16.9 2.3 14 42-55 72-85 (122)
486 PRK05703 flhF flagellar biosyn 20.3 3.1E+02 0.0067 19.0 5.4 38 12-56 333-370 (424)
487 COG5019 CDC3 Septin family pro 20.2 3.1E+02 0.0066 18.9 4.9 43 10-57 134-176 (373)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=2.2e-23 Score=122.88 Aligned_cols=106 Identities=49% Similarity=0.876 Sum_probs=89.0
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|.+||+++|++|+|+|++++.++.+...++..++......+.|+++++||+|++......++.+.++........+.+
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEE
Confidence 36999999999999999999999999888888887765445679999999999998776677777777654444456678
Q ss_pred EEccccCCCChHHHHHHHHHHHhhcC
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKHL 106 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~~ 106 (106)
+++||++|+|+.++|+||.+.+.+++
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~~~ 181 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIANKA 181 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhhcC
Confidence 89999999999999999999987763
No 2
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.89 E-value=4.4e-22 Score=116.85 Aligned_cols=102 Identities=47% Similarity=0.875 Sum_probs=91.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC-CCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK-DRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (106)
++|++||.++|++|||+|.+++..+.+....+.+++.+....++|+++++||.|+++.....++.+.+....+. ...+.
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEE
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceE
Confidence 47999999999999999999998999999999999988777889999999999998888888888888766554 67889
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++.|||.+|+|+.+.++||.+++
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhcC
Confidence 99999999999999999999864
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.89 E-value=4.3e-22 Score=116.83 Aligned_cols=102 Identities=50% Similarity=0.906 Sum_probs=85.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|.+|++++|++++|+|++++.++++...++...++.....+.|+++++||+|+.+.....++.+.++........+.++
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEE
Confidence 68999999999999999999999999988888877654445789999999999976656667777776554445567788
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||++|.|+.++|+||.+.+.
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 4
>KOG0070|consensus
Probab=99.89 E-value=5.2e-22 Score=114.54 Aligned_cols=105 Identities=51% Similarity=0.866 Sum_probs=98.5
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
|+|++||++++++|||+|.+++.++.+....+..++.+..+.+.|+++.+||.|+++..+..++.+.++...+....+.+
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~i 155 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHI 155 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEE
Confidence 68999999999999999999999999999999999999888899999999999999988899999999988878889999
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
..|+|.+|+|+.+.++|+.+.+.++
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred eeccccccccHHHHHHHHHHHHhcc
Confidence 9999999999999999999988754
No 5
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=6.6e-22 Score=116.72 Aligned_cols=105 Identities=49% Similarity=0.863 Sum_probs=87.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|+.|++++|++|+|+|++++.++.+...++.+.+......++|+++++||.|+++.....++.+.++........+.++
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence 68999999999999999999999998888888776654445789999999999976656667777776544445567788
Q ss_pred EccccCCCChHHHHHHHHHHHhhcC
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQKHL 106 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~~~ 106 (106)
++||++|.|++++|++|.+.+.+++
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887653
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=4.4e-22 Score=116.11 Aligned_cols=99 Identities=41% Similarity=0.845 Sum_probs=82.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|+.||+++|++++|+|++++.++.+...++.+.+......+.|+++++||+|+.+.....++.+.++........+.++
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEE
Confidence 68899999999999999999989999888888887664445789999999999876556677777765443344557899
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|.|++++|+||.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999875
No 7
>KOG0073|consensus
Probab=99.88 E-value=3.7e-22 Score=113.17 Aligned_cols=105 Identities=45% Similarity=0.761 Sum_probs=94.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (106)
++|++||..+|++|||+|.+++.++++....+.+++.+..+.+.|+++++||.|++++...+.+...++...+ ++..++
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~ 154 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR 154 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce
Confidence 5799999999999999999999999999999999998877888999999999999988888888877776655 677899
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
.+.|||.+|+++.+.++||...+..+
T Consensus 155 l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 155 LVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EEEEeccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.88 E-value=7.1e-22 Score=114.31 Aligned_cols=99 Identities=55% Similarity=0.945 Sum_probs=80.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|+.||+++|++++|+|.+++.++++...++.+.+......+.|+++++||+|+.......++.+.++......+.+.++
T Consensus 60 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 139 (159)
T cd04150 60 LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQ 139 (159)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEE
Confidence 68999999999999999999999999888888777654445689999999999976545556666665444444567889
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|.|++++|++|.+
T Consensus 140 ~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 140 ATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EeeCCCCCCHHHHHHHHhc
Confidence 9999999999999999864
No 9
>KOG0084|consensus
Probab=99.87 E-value=1.2e-21 Score=114.04 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=79.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+..+||++|||+|+|||+++..||..+..|+.+.-+.. ..++|.++||||+|+.++ ...++..+... ..+++
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~ 147 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIP 147 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCc
Confidence 56789999999999999999999999999998876553 356899999999999764 23344444433 33455
Q ss_pred -EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 -IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 -~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||+++.||++.|..++..++.+
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999888754
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.87 E-value=3.6e-21 Score=114.16 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=78.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|+.|++++|++++|||++++.+|+.+..|+.++.... .+.|+++|+||.|+.. .....+..+... ..+++
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~-----~~~~~ 143 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAE-----RNGMT 143 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHH-----HcCCE
Confidence 68899999999999999999999999998888775542 4789999999999864 234444444442 34578
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++|||++|.||+++|+++++.+..
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.87 E-value=5.6e-21 Score=114.37 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=76.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|+.||+++|++|+|||++++.+|+.+..|+..+ ......+.|+++|+||+|+... ....+..+... +..++
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~~~ 138 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEKFAQ----QITGM 138 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCC
Confidence 47899999999999999999999999998877654 3323356899999999998532 23333333322 11246
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++++||++|.||+++|+++++.+.+
T Consensus 139 ~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 139 RFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999987754
No 12
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=1.5e-20 Score=109.71 Aligned_cols=102 Identities=46% Similarity=0.778 Sum_probs=82.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 80 (106)
+|..|++++|++++|+|.+++.++++...++..++......+.|+++++||+|+.......++.+.+..... ....+.+
T Consensus 59 ~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEE
Confidence 688999999999999999999999999988888876644456899999999999765566666666543221 1224578
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++||++|.|++++|++|.+.+.
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998764
No 13
>KOG0071|consensus
Probab=99.86 E-value=6.4e-21 Score=105.93 Aligned_cols=104 Identities=44% Similarity=0.852 Sum_probs=96.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
|+|+|||..+.++|||+|..+.+..++.++++.+.++++++.+.|+++.+||.|++.+....++.+.+.....+...+.+
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~v 155 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYV 155 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEe
Confidence 68999999999999999999999999999999999999999999999999999999998999999999887777788999
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+||.+|.|+.+.+.||.+.+..
T Consensus 156 qp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 156 QPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred eccccccchhHHHHHHHHHhhccC
Confidence 999999999999999999887643
No 14
>KOG0072|consensus
Probab=99.86 E-value=4.7e-21 Score=106.86 Aligned_cols=105 Identities=59% Similarity=1.002 Sum_probs=95.0
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
|+|++||.++|++|+|+|.++.+.......++...+++.++....++++.||.|........++...++...++...+.+
T Consensus 77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~I 156 (182)
T KOG0072|consen 77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQI 156 (182)
T ss_pred HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEE
Confidence 68999999999999999999988877777778888888888889999999999998777788888888888778888999
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+.+||.+|+|++...+||.+.++.+
T Consensus 157 v~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 157 VKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred EeeccccccCCcHHHHHHHHHHhcc
Confidence 9999999999999999999988765
No 15
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=1.8e-20 Score=109.17 Aligned_cols=100 Identities=36% Similarity=0.556 Sum_probs=82.4
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc---CCCc
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL---KDRT 77 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~ 77 (106)
++|+.|++++|++++|+|++++.++.+...++..++......++|+++++||+|++......++.+.+....+ ....
T Consensus 58 ~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~ 137 (167)
T cd04161 58 GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSL 137 (167)
T ss_pred HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCce
Confidence 3699999999999999999999899998888888877655567999999999999876666677776654433 1235
Q ss_pred eEEEEccccCC------CChHHHHHHHHH
Q psy12794 78 FQIFKTSAKEG------EGLNDSMDWLSN 100 (106)
Q Consensus 78 ~~~~~~sa~~~------~~v~~~~~~l~~ 100 (106)
+.+++|||++| +|+.+.|+||..
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 78899999998 899999999964
No 16
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=2.7e-20 Score=108.86 Aligned_cols=99 Identities=47% Similarity=0.775 Sum_probs=80.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.++.+...++..++......+.|+++++||+|+.+.....++.+.+.........++++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQ 153 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEE
Confidence 68889999999999999999988988887787776544446799999999999876556666766665433334578999
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|.|++++|+++.+
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999864
No 17
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=3.6e-20 Score=108.54 Aligned_cols=99 Identities=48% Similarity=0.889 Sum_probs=81.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
.|..+++++|++++|+|.+++.++.....++.++++.....++|+++++||+|+.......++.+.++........++++
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 154 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQ 154 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 58889999999999999999888888887788877665456799999999999876555666777666443344567899
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|.|+++++++|.+
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 9999999999999999975
No 18
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=6.9e-20 Score=105.71 Aligned_cols=99 Identities=69% Similarity=1.130 Sum_probs=77.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|+.|++++|++++|+|++++.++.....++...++.....++|+++++||+|+.+.....++.+.++.......+.+++
T Consensus 59 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 59 YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEE
Confidence 68999999999999999999877777666676665554445789999999999875544556666655433333457899
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|.|+++++++|++
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999999874
No 19
>KOG0075|consensus
Probab=99.84 E-value=6.2e-20 Score=102.74 Aligned_cols=103 Identities=31% Similarity=0.564 Sum_probs=95.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..|++.++++++|+|++++......+.++..++..+.+.+.|+++++||.|++++.+...+.+.++......+.+..
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC 159 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCC 159 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEE
Confidence 58999999999999999999999988888889999998888899999999999999999999999999988777888999
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+.+|+++..|++-..+||.++-.
T Consensus 160 ~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHhh
Confidence 99999999999999999998765
No 20
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=7.7e-20 Score=108.05 Aligned_cols=100 Identities=36% Similarity=0.612 Sum_probs=83.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC-------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK------- 74 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~------- 74 (106)
+|..|++++|++++|+|++++.++.....++.++++.....+.|+++++||+|++.....+++.+.++.....
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccC
Confidence 6899999999999999999998888888778777765445678999999999997767778888887754321
Q ss_pred CCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 75 DRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
.+...+++|||++|+|++++++||.+.
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 246689999999999999999999864
No 21
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=5e-20 Score=110.11 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=76.0
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (106)
++|+.||+++|++|+|||++++.+|..+..|+.++.+.. .+.|+++|+||+|+.... ..... +.. ...++.
T Consensus 59 ~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~ 130 (200)
T smart00176 59 GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFH-----RKKNLQ 130 (200)
T ss_pred hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HHH-----HHcCCE
Confidence 368899999999999999999999999988777665542 478999999999985432 22222 221 234678
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++|||++|.||.++|+++++.+.+
T Consensus 131 ~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 131 YYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987754
No 22
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=9.3e-20 Score=105.23 Aligned_cols=99 Identities=38% Similarity=0.784 Sum_probs=77.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++.....++..+++.... .+.|+++++||+|+.+.....++.+.++........+.
T Consensus 61 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 140 (162)
T cd04157 61 LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWH 140 (162)
T ss_pred HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEE
Confidence 6889999999999999999988888777777776654322 46899999999998765444555555543322234567
Q ss_pred EEEccccCCCChHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~ 100 (106)
++++||++|.|++++|++|.+
T Consensus 141 ~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 141 IFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeeCCCCCchHHHHHHHhc
Confidence 999999999999999999865
No 23
>PTZ00099 rab6; Provisional
Probab=99.84 E-value=9.1e-20 Score=107.13 Aligned_cols=98 Identities=20% Similarity=0.319 Sum_probs=77.2
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|..||+++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+... ....+..+.. ...+.
T Consensus 44 ~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~ 117 (176)
T PTZ00099 44 SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNT 117 (176)
T ss_pred hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCC
Confidence 3688899999999999999999999999888877765432 46899999999998542 2333333332 22345
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++++||++|.|++++|+++++.+.+
T Consensus 118 ~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 118 MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999988754
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.83 E-value=7.6e-20 Score=107.06 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=76.2
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|+.|++++|++++|||++++.+|..+..|+..+.......+.|+++|+||+|+... ....+..+.. +..++
T Consensus 65 ~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a-----~~~~~ 139 (172)
T cd04141 65 AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA-----REFNC 139 (172)
T ss_pred HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH-----HHhCC
Confidence 3688999999999999999999999998876544433222356899999999998543 2333333322 22357
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++|||++|.|++++|+++++.+.++
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999877643
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.83 E-value=1e-19 Score=108.10 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=72.5
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------------HHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSV--------------AEVH 65 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------------~~~~ 65 (106)
++|+.||+++|++|+|||++++.+|+.+.. |....... ..+.|+++|+||.|+.+.... .+..
T Consensus 66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 468899999999999999999999999874 55444332 247899999999998643211 1111
Q ss_pred HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+.. +..+ ++++++||++|.|++++|+++++.+..
T Consensus 144 ~~a-----~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 144 ALA-----KQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHH-----HHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 111 1223 589999999999999999999987653
No 26
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=2e-19 Score=103.73 Aligned_cols=99 Identities=39% Similarity=0.703 Sum_probs=79.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 80 (106)
+|..+++++|++++|+|++++.++.....++...++.....+.|+++++||+|+.......++...++.... ...++++
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 139 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYV 139 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEE
Confidence 588899999999999999998888888888888776644467999999999998755555666665543222 2346789
Q ss_pred EEccccCCCChHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~ 100 (106)
++|||++|+|++++|++|.+
T Consensus 140 ~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 140 QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EecccccCCChHHHHHHHhc
Confidence 99999999999999999864
No 27
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=3.2e-19 Score=105.34 Aligned_cols=103 Identities=35% Similarity=0.565 Sum_probs=79.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 80 (106)
+|..|++++|++++|+|++++.++.....++.++.......++|+++++||+|+.......++....+.... ....+++
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEE
Confidence 688999999999999999998888887777766665444457899999999998755455555555442221 2234678
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|+|+++++++|.+.+.+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987753
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.83 E-value=1.6e-19 Score=106.14 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=73.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------CCHHHHHHHh
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC------------MSVAEVHRAL 68 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~ 68 (106)
+++.|+++++++++|||++++.+|+.+ ..|+..+.+.. .+.|+++||||+|+.+. ....+..+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 577899999999999999999999998 56776654432 46899999999998542 2233333332
Q ss_pred CCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 69 GLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 69 ~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+..+. .+++|||++|.||+++|..+++.+.+
T Consensus 143 -----~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 143 -----KQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred -----HHcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 22344 69999999999999999999987643
No 29
>KOG0092|consensus
Probab=99.83 E-value=7.4e-20 Score=106.27 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=81.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (106)
|+-+-||++++++|+|||+++..||.....|+.++..... .+.-+.+||||+|+.. .....++.... .+.++
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA-----e~~gl 142 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA-----ESQGL 142 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH-----HhcCC
Confidence 3456799999999999999999999999999988766543 6678888999999976 34555565555 34678
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.|+++||++|.|++++|..|.+.+.+
T Consensus 143 l~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 143 LFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred EEEEEecccccCHHHHHHHHHHhccC
Confidence 99999999999999999999988764
No 30
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=5e-19 Score=104.81 Aligned_cols=101 Identities=36% Similarity=0.647 Sum_probs=81.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-------- 73 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-------- 73 (106)
+|..|++++|++++|+|.+++.++.....++...+......+.|+++++||+|+.......++.+.++....
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc
Confidence 588899999999999999998888888778888776554567999999999998766667777777764321
Q ss_pred ---CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 74 ---KDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 74 ---~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
....+++++|||++|+|++++|+||.+.+
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 12346799999999999999999998753
No 31
>KOG0078|consensus
Probab=99.82 E-value=2e-19 Score=105.85 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=78.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+.+.||+.|+++++|||+++..+|+.+..|+...-++ ...++|.++||||+|+... ...++..... ...++.
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA-----~e~G~~ 150 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALA-----REYGIK 150 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHH-----HHhCCe
Confidence 4578999999999999999999999999977665444 3358999999999998752 2333333332 345789
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
|+|+||++|.||++.|..|++.+.++
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999988754
No 32
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=4e-19 Score=106.25 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=76.7
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC---cCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE---EELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKD 75 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~ 75 (106)
++|+.|++++|++++|||++++.+++.+..|+..+... ....+.|+++|+||+|+.. .....++.+.... .
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~ 140 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE----N 140 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH----c
Confidence 36889999999999999999999999988776554332 1125689999999999862 3344455544431 1
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
....++++||++|.|++++|+++.+.+.+
T Consensus 141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 141 GFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 12589999999999999999999987753
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=4.8e-19 Score=104.03 Aligned_cols=100 Identities=13% Similarity=0.242 Sum_probs=78.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 153 (180)
T cd04127 79 LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIP 153 (180)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCe
Confidence 578899999999999999999999999888777655433346899999999998643 23333333332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhcC
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKHL 106 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~~ 106 (106)
++++||++|.|++++|+++.+.+.+++
T Consensus 154 ~~e~Sak~~~~v~~l~~~l~~~~~~~~ 180 (180)
T cd04127 154 YFETSAATGTNVEKAVERLLDLVMKRI 180 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999998887653
No 34
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.81 E-value=4.2e-19 Score=102.89 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=76.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (106)
++|+.|++++|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.... ...+..+.. +..++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 138 (164)
T cd04175 64 AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWGC 138 (164)
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH-----HHhCC
Confidence 36888999999999999999999999988888777654444678999999999986432 222222221 12246
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||++|.|++++|.++.+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999998764
No 35
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=5.9e-19 Score=102.74 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=75.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
++..+++++|++|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.......+..+.. +...++++
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 137 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYY 137 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEE
Confidence 57789999999999999999999998888777765542 279999999999986433222222222 23457899
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|++++|++|++.+.+
T Consensus 138 e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 138 EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 36
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=7.8e-19 Score=102.03 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=76.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|+.+++++|++++|||++++.+++.+..|+....... ..+.|+++++||+|+.+. ....+..+... ..+++
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 140 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLL 140 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCE
Confidence 57889999999999999999999999988877654432 246899999999998653 23344444432 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|.+++..+.+
T Consensus 141 ~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 141 FLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999987754
No 37
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=7.1e-19 Score=102.23 Aligned_cols=98 Identities=38% Similarity=0.646 Sum_probs=77.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-CCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-KDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (106)
++|..|++++|++++|+|.+++.++.....++.++.... .++|+++++||+|+.......++.+.++.... +..+++
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 136 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI 136 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE
Confidence 368899999999999999999888888888887776542 57999999999998766555565555543332 445788
Q ss_pred EEEccccC------CCChHHHHHHHHH
Q psy12794 80 IFKTSAKE------GEGLNDSMDWLSN 100 (106)
Q Consensus 80 ~~~~sa~~------~~~v~~~~~~l~~ 100 (106)
++++||++ ++||.++|+.+..
T Consensus 137 ~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 137 LQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 89888888 9999999998764
No 38
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.81 E-value=7.2e-19 Score=103.82 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~ 66 (106)
+++.||+++|++++|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. ....+..+
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 578899999999999999999999997 56666554432 46899999999998531 23333333
Q ss_pred HhCCCCcCCCc-eEEEEccccCCCC-hHHHHHHHHHHHh
Q psy12794 67 ALGLENLKDRT-FQIFKTSAKEGEG-LNDSMDWLSNALQ 103 (106)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~sa~~~~~-v~~~~~~l~~~~~ 103 (106)
.. +..+ .+|++|||++|.| |+++|..+.+...
T Consensus 147 ~a-----~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 147 MA-----KQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HH-----HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 33 2234 4899999999998 9999999988643
No 39
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.80 E-value=5.7e-19 Score=102.14 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=71.9
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC----cCCHHHHHHHhCCCCcCCCceE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
..|++++|++++|||++++.+|+.+..|+.++.......+.|+++|+||.|+.. .....+..+... +...+.
T Consensus 60 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~ 135 (158)
T cd04103 60 AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCS 135 (158)
T ss_pred hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCc
Confidence 357889999999999999999999988888776654445689999999999742 122223323221 123478
Q ss_pred EEEccccCCCChHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
|++|||++|.||+++|+.+++.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
No 40
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=8.4e-19 Score=106.20 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=75.7
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (106)
++|..||+++|++|+|||++++.++..+..|+..+... ..+.|+++|+||+|+.... ...++ +.. ...+++
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~ 148 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQ 148 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCE
Confidence 36788999999999999999999999998887776543 2468999999999985432 22222 222 234578
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|++|++.+.+
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999987753
No 41
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.80 E-value=6.5e-19 Score=101.50 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=75.2
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (106)
++|..|+++++++++|+|++++.++.++..|+..+.+.....+.|+++++||+|+.+.. ...+..+... ..+.+
T Consensus 64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 138 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIP 138 (162)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCe
Confidence 36888999999999999999998999888777776654434578999999999986532 2233333321 23458
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||++|.|++++|+++.+.+
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 42
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=2.3e-18 Score=99.20 Aligned_cols=99 Identities=49% Similarity=0.837 Sum_probs=81.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..+++++|++++|+|++++.++.....++..........+.|+++++||+|+.......++.+.++........++++
T Consensus 59 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEE
Confidence 58889999999999999999988988888787776654446799999999999876655667777665433334567999
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|.|++++|++|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999999875
No 43
>KOG0094|consensus
Probab=99.80 E-value=4.8e-19 Score=103.26 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=81.8
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++.+.|++++.++|.|||+++..+|+....|+....+..+..++-+++||||.||.+.. ++...-+....+..+..|
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f 162 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEF 162 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEE
Confidence 47789999999999999999999999999999999988776678999999999997542 222222211123445689
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++||+.|.||.++|..++..+..
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhccC
Confidence 999999999999999998877653
No 44
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.80 E-value=1.9e-18 Score=104.61 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=74.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC---------------------cCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN---------------------CMS 60 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------------------~~~ 60 (106)
+|..|++++|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+ ...
T Consensus 60 l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~ 138 (220)
T cd04126 60 LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVT 138 (220)
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCC
Confidence 67889999999999999999999999988887766532 24689999999999864 112
Q ss_pred HHHHHHHhCCCC---------cCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 61 VAEVHRALGLEN---------LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 61 ~~~~~~~~~~~~---------~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.++..+...... ......+|++|||++|.||+++|..+++.+.
T Consensus 139 ~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 139 LEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 233333221100 0111368999999999999999999997764
No 45
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=2e-18 Score=100.19 Aligned_cols=99 Identities=38% Similarity=0.683 Sum_probs=79.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC--cCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN--LKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++.....++..+++.....+.|+++++||+|+.......++.+.+.... ......+
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence 57889999999999999998888888887787777665456799999999999877655566666554322 1234578
Q ss_pred EEEccccCCCChHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~ 100 (106)
++++||++|+|+++++++|++
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999875
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.79 E-value=1.5e-18 Score=100.26 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=74.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|+.|++++|++++|||++++.+++.+..|+..+.......+.|+++++||+|+... ....+..... +..+.
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 138 (163)
T cd04136 64 AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA-----RQWGC 138 (163)
T ss_pred hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH-----HHcCC
Confidence 3688899999999999999999999998887777665433357899999999998542 2222222222 11236
Q ss_pred EEEEccccCCCChHHHHHHHHHHH
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+++++||++|.|+.++|+++.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhc
Confidence 899999999999999999998764
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=9e-19 Score=101.36 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=74.4
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (106)
++|+.|++++|++++|+|++++.++.++..|+..+.......+.|+++++||+|+.... ...+... +. ...+.
T Consensus 64 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~ 138 (163)
T cd04176 64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRA-LA----EEWGC 138 (163)
T ss_pred chHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHH-HH----HHhCC
Confidence 46889999999999999999999999998877776654333578999999999985422 2222222 11 11245
Q ss_pred EEEEccccCCCChHHHHHHHHHHH
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+++++||++|.|+.++|.++++.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHHhc
Confidence 899999999999999999998765
No 48
>PTZ00369 Ras-like protein; Provisional
Probab=99.79 E-value=2.1e-18 Score=102.26 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+. ....+..+.. ...+.
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~ 142 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGI 142 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCC
Confidence 3688899999999999999999999999887777665433357899999999998543 2222222222 12245
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++||++|.|++++|+++++.+.+
T Consensus 143 ~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 143 PFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999987754
No 49
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=1.3e-18 Score=102.04 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=68.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~ 66 (106)
+|+.|++++|++|+|||++++.+|+.+.. |+..+... ..+.|+++|+||+|+.+... ..+..+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 67889999999999999999999999864 54444332 24689999999999854211 111111
Q ss_pred HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
... +....++++|||++|.|++++|+.+++.
T Consensus 143 ~~~----~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 143 MAK----EIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHH----HcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 111 1122589999999999999999999864
No 50
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=2.3e-18 Score=103.80 Aligned_cols=99 Identities=18% Similarity=0.372 Sum_probs=77.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|||++++.+++++..|+.+..........|+++++||+|+... ....+..+.. +..+++
T Consensus 68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 142 (211)
T cd04111 68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMK 142 (211)
T ss_pred HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCE
Confidence 577899999999999999999999999988887765543346789999999998643 2333333332 223478
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|++|++.+.++
T Consensus 143 ~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999877543
No 51
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.9e-18 Score=104.48 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=72.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~ 66 (106)
+++.||+++|++++|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+... ...++..+
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 577899999999999999999999975 56666554432 46899999999998531 22333333
Q ss_pred HhCCCCcCCCce-EEEEccccCCC-ChHHHHHHHHHHHhh
Q psy12794 67 ALGLENLKDRTF-QIFKTSAKEGE-GLNDSMDWLSNALQK 104 (106)
Q Consensus 67 ~~~~~~~~~~~~-~~~~~sa~~~~-~v~~~~~~l~~~~~~ 104 (106)
.. +..++ .|++|||++|+ ||+++|..++..+.+
T Consensus 155 ~a-----~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 155 LA-----KQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred HH-----HHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 33 23455 69999999998 899999999887643
No 52
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=1.7e-18 Score=103.24 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=68.8
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCc---------------------CCH
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNC---------------------MSV 61 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------------------~~~ 61 (106)
+.||+++|++++|||++++.+|+.+.. |+..+.... .+.|+++|+||+|+... ...
T Consensus 82 ~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 82 RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 458999999999999999999998864 555543331 46899999999998531 122
Q ss_pred HHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
.+..+.. +..+++|++|||++|.||+++|+.++++
T Consensus 160 ~e~~~~a-----~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVA-----KELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHH-----HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3333332 2345689999999999999999999864
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.78 E-value=3.7e-18 Score=101.30 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=74.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~ 77 (106)
+|..|++++|++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+... ....+..+.. ...+
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~ 137 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLG 137 (190)
T ss_pred HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhC
Confidence 578899999999999999999999998887766544321 246899999999998542 2222222222 1234
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++++||++|.|++++|+++.+.+.+
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999987754
No 54
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.78 E-value=3e-18 Score=100.60 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=69.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~ 66 (106)
+|..|++++|++++|||++++.+++.+.. |+...... . .+.|+++|+||+|+..... .++..+
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~ 142 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK 142 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHH
Confidence 57789999999999999999999999874 55444332 1 4689999999999854311 111111
Q ss_pred HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
... ....+.+++|||++|.|++++|+.+++..
T Consensus 143 ~a~----~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 143 LAR----DLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHH----HhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 110 11236899999999999999999998753
No 55
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.78 E-value=2.9e-18 Score=103.56 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~ 77 (106)
+|+.|++++|++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+... ....+..+... ..+
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~ 140 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANG 140 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcC
Confidence 578899999999999999999999998877666554321 134689999999998632 22233333222 234
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++++||++|.|++++|+++++.+.
T Consensus 141 ~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 MESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999998775
No 56
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.78 E-value=7e-18 Score=98.14 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=76.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+..+... ...+.|+++++||+|+.+. ....+..+... ..+++
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 141 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIK 141 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCE
Confidence 5778899999999999999999999988877766543 2246899999999998743 23333333332 23458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998765
No 57
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=4.9e-18 Score=99.97 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=71.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~ 66 (106)
+++.|++++|++++|||++++.+|+.+ ..|+..+.+.. .+.|+++|+||+|+.+. ....+..+
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH
Confidence 567789999999999999999999996 56666554432 46899999999998541 22233333
Q ss_pred HhCCCCcCCCce-EEEEccccCCCC-hHHHHHHHHHHHh
Q psy12794 67 ALGLENLKDRTF-QIFKTSAKEGEG-LNDSMDWLSNALQ 103 (106)
Q Consensus 67 ~~~~~~~~~~~~-~~~~~sa~~~~~-v~~~~~~l~~~~~ 103 (106)
.. +..++ +|++|||++|+| |+++|..+.+...
T Consensus 143 ~a-----~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 143 IA-----KQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HH-----HHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 32 22344 799999999995 9999999988643
No 58
>KOG0076|consensus
Probab=99.78 E-value=2.8e-19 Score=102.46 Aligned_cols=104 Identities=37% Similarity=0.664 Sum_probs=89.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC-cCCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN-LKDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (106)
|+|..||..+|++|+++|++++..+.+....+.....+....+.|+++.+||.|+.+.....++...++... ...+.++
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~ 163 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNP 163 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCc
Confidence 689999999999999999999999999998899988888888999999999999987666667766666322 2345678
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+..+||.+|+||++..+|+...+.+
T Consensus 164 ~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 164 FQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred cccchhhhcccHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 59
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=4.3e-18 Score=100.97 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=71.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH--------------HHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSVAE--------------VHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--------------~~~ 66 (106)
+|+.||+++|++++|||++++.+|+.+.. |+..+... ..+.|+++|+||+|+.......+ ..+
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 67889999999999999999999998864 55555433 24689999999999865322111 111
Q ss_pred HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
... ....++++++||++|.|++++|+++++.+.
T Consensus 142 ~~~----~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 142 VAK----RINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHH----HcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 111 112368999999999999999999998775
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.78 E-value=4.3e-18 Score=98.43 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=74.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.+.....+.|+++++||+|+.... ...+..+... ..+.+
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 140 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIP 140 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCc
Confidence 5788999999999999999999999988887776654333578999999999986432 2233333221 23458
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||++|.|++++|+++.+.+
T Consensus 141 ~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 141 YIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999999998765
No 61
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=3.5e-18 Score=100.89 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=71.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-------HHHHHHHhCCCCcC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-------VAEVHRALGLENLK 74 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-------~~~~~~~~~~~~~~ 74 (106)
+|+.|++++|++++|||++++.+++++..|+....+.. ....| ++|+||+|+..... ..+..+.. +
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a-----~ 137 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA-----K 137 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHH-----H
Confidence 68889999999999999999999999988887765532 23456 67899999853211 11111111 2
Q ss_pred CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 75 DRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
..+.+++++||++|.|++++|+++.+.+.
T Consensus 138 ~~~~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 138 AMKAPLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23468999999999999999999998764
No 62
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.78 E-value=7.9e-18 Score=97.75 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=75.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.+++.+..|+..+... ...+.|+++++||+|+.+.. ...+..+... ..+++
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 139 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFE 139 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCE
Confidence 5788999999999999999999999998877665433 22468999999999986432 2233333221 22458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+..
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.77 E-value=4.3e-18 Score=98.57 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=75.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.+++.+..|...+.......+.|+++++||+|+... ....+..+... ..+.+
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 138 (164)
T smart00173 64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCP 138 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCE
Confidence 578899999999999999999999988877766655433357899999999998643 22233333322 22468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 139 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 139 FLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 64
>KOG0093|consensus
Probab=99.77 E-value=1.8e-18 Score=97.00 Aligned_cols=96 Identities=19% Similarity=0.310 Sum_probs=75.9
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
..||++++++|++||.++.++|..+..|....- +....+.|+++|+||||+.++ ...+...+... ..+++||
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefF 161 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFF 161 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHh
Confidence 468999999999999999999999998876654 334468999999999998654 23333333332 2356899
Q ss_pred EccccCCCChHHHHHHHHHHHhhc
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++||+++.|++++|+.+...+.++
T Consensus 162 EtSaK~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDIICDK 185 (193)
T ss_pred hhcccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999888654
No 65
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.77 E-value=5e-18 Score=98.34 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=73.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|||++++.+++++..|+...... ...+.|+++++||.|+.+.. ...+..... +..+.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 138 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA-----KEYGMD 138 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCE
Confidence 5788999999999999999999999998877765443 22468999999999986432 233333332 223468
Q ss_pred EEEccccCCCChHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++||++|.|++++|.+|.+.
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
No 66
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.77 E-value=1.1e-17 Score=96.92 Aligned_cols=97 Identities=27% Similarity=0.392 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC----CCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE----LRDAILVILANKQDMKN--CMSVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~ 75 (106)
+|+.+++++|++++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ .....+...... .
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~ 139 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----S 139 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----H
Confidence 577899999999999999999999988887777665432 24689999999999863 223333333321 2
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+++++++||++|.|++++|+++.+.+.
T Consensus 140 ~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 140 KGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999998764
No 67
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.77 E-value=7.9e-18 Score=98.38 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=74.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~ 77 (106)
+|..+++++|++++|+|++++.++..+..|+..+.+.....+.|+++|+||+|+.+... ..+..... ...+
T Consensus 65 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~-----~~~~ 139 (170)
T cd04108 65 IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA-----AEMQ 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH-----HHcC
Confidence 67889999999999999999999999888887766543334578999999999854321 11111221 1123
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+++++||++|.|++++|+.+++.+.+
T Consensus 140 ~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 140 AEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999987753
No 68
>KOG0098|consensus
Probab=99.77 E-value=2.9e-18 Score=99.40 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=80.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+-+.||+++-++++|||++++.+|..+..|+.+..++. ..+..+++++||+|+... ...++..... +..++.
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA-----~ehgLi 144 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFA-----REHGLI 144 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHH-----HHcCce
Confidence 45789999999999999999999999999999987764 267899999999998653 3444555444 346788
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++++|++++|......+.+
T Consensus 145 fmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 145 FMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred eehhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999988877654
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.76 E-value=1.5e-17 Score=96.52 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=75.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+...... ...+.|+++++||+|+... ....+...... ..+++
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 140 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIP 140 (166)
T ss_pred HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCe
Confidence 5778999999999999999999999998877665443 2246899999999998543 22333333322 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 70
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=1.7e-17 Score=102.04 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=76.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc--------CCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE--------ELRDAILVILANKQDMKN--CMSVAEVHRALGLE 71 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~ 71 (106)
++..++.++|++|+|||++++.+|+.+..|+.++.... ...+.|+++++||+|+.. .....++.+.++
T Consensus 64 ~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~-- 141 (247)
T cd04143 64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG-- 141 (247)
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH--
Confidence 46678999999999999999999999888777765421 224689999999999864 344556666554
Q ss_pred CcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 72 NLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 72 ~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
....+.++++||++|.|++++|++|++..
T Consensus 142 --~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 142 --GDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred --hcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 22356899999999999999999999865
No 71
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.76 E-value=2.3e-17 Score=96.25 Aligned_cols=99 Identities=43% Similarity=0.826 Sum_probs=79.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
.|..+++++|++++|+|.++..++.....++...+......+.|+++++||+|+.+.....++.+.++........++++
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~ 153 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQ 153 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEE
Confidence 47788999999999999998888887777776766554445789999999999876555666777666544444556789
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++||++|+|++++++||++
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 9999999999999999975
No 72
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.76 E-value=3.6e-17 Score=93.70 Aligned_cols=99 Identities=32% Similarity=0.616 Sum_probs=78.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..+++++|++++|+|++++.++.....++..+.......++|+++++||+|+.+.....++.+.++........++++
T Consensus 60 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (159)
T cd04159 60 MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCY 139 (159)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEE
Confidence 57889999999999999998888887777777776654446789999999999876555555555554333333457899
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
++|+++|.|++++++++.+
T Consensus 140 ~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 140 SISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEeccCCChHHHHHHHhh
Confidence 9999999999999999875
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=2.2e-17 Score=98.71 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=72.4
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc--CCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE--ELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 80 (106)
.+++++|++++|||++++.+++.+..|+..+.... ...+.|+++++||+|+.... ...+..+... +..++++
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~ 151 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGY 151 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcE
Confidence 45789999999999999999998887776665543 13568999999999985431 2222222222 2245789
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++|+.+++.+..
T Consensus 152 ~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 152 LECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999977653
No 74
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.76 E-value=1.9e-17 Score=96.41 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=74.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 77 (106)
+|..|++++|++++|||++++.+++.+..|...+..... ..+.|+++++||+|+... ....++.+... ....
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 145 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGD 145 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCC
Confidence 678899999999999999999999988887766654322 245899999999998642 34444544443 1123
Q ss_pred eEEEEccccCCCChHHHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
.+++++||++|.|+.++|+++++.
T Consensus 146 ~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 146 YPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999865
No 75
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=2.7e-17 Score=99.74 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHRA 67 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~~ 67 (106)
+++.||+++|++++|||++++.+|+.+..+|....... ..+.|+++|+||+|+.... ...+....
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ 143 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL 143 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHH
Confidence 57889999999999999999999999865454433322 2468999999999985421 11111111
Q ss_pred hCCCCcCCCc-eEEEEccccCCCC-hHHHHHHHHHHHhh
Q psy12794 68 LGLENLKDRT-FQIFKTSAKEGEG-LNDSMDWLSNALQK 104 (106)
Q Consensus 68 ~~~~~~~~~~-~~~~~~sa~~~~~-v~~~~~~l~~~~~~ 104 (106)
. +..+ .+|++|||+++.| |.++|+.+......
T Consensus 144 a-----k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 144 A-----KQVGAVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred H-----HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 1 2234 4899999999885 99999998876543
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=3.3e-17 Score=97.32 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=74.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.+++.+..|+..+... ...+.|+++++||+|+... ....+..... ...+.+
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~ 139 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVP 139 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCe
Confidence 4678899999999999999999999888877665543 2246899999999998532 2223333322 123468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++++.+.+
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=2.8e-17 Score=95.20 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=73.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|+.|++++|++++|+|++++.+++++..|+..+.+. ..+.|+++++||+|+.... ..+..+.. ...++++
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~-----~~~~~~~ 135 (161)
T cd04124 64 TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFNFA-----EKHNLPL 135 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHHHH-----HHcCCeE
Confidence 36889999999999999999999998888777666443 2468999999999984321 11111111 1234689
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++|+.+.+.+.++
T Consensus 136 ~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 136 YYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999887654
No 78
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.75 E-value=1.3e-17 Score=97.26 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++.....|+..+.......+.|+++++||+|+.... ...+..+.. ....++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 142 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA-----DAHSMP 142 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH-----HHcCCc
Confidence 5788999999999999999999999998877666554334579999999999986432 222222222 223478
Q ss_pred EEEccccC---CCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKE---GEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~---~~~v~~~~~~l~~~~~ 103 (106)
++++||++ +.|++++|..+++.++
T Consensus 143 ~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 99999999 8999999999988764
No 79
>KOG0394|consensus
Probab=99.75 E-value=2.2e-17 Score=95.62 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=79.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCC---CCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELR---DAILVILANKQDMKNC----MSVAEVHRALGLENLKD 75 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~ 75 (106)
-..+|+++|.++++||++++.+|+.+..|..+++...... .=|++|+|||+|+.++ .+.....++.+ ..
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~ 150 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SK 150 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hc
Confidence 3458999999999999999999999999999988754432 2499999999998653 34455566655 45
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+++||++|||+..||++.|+.+.+...
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHHHH
Confidence 6899999999999999999999987654
No 80
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.75 E-value=4.2e-17 Score=97.46 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=75.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|+++++++++|+|++++.++..+..|+..+.... ...|+++|+||+|+... ....+..+... ..+++
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 143 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGIS 143 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence 57889999999999999999999999988877665432 46899999999998653 23333333322 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+..
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 144 LFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999987653
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.75 E-value=3e-17 Score=95.87 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=70.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~ 66 (106)
+++.+++++|++++|||++++.+++.+.. |+...... ..+.|+++|+||+|+..... ..+..+
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA 139 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHH
Confidence 56778999999999999999999998864 55544332 24799999999999864221 111111
Q ss_pred HhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 67 ALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.. +..+ .+++++||++|.|++++|+.+.+.+..
T Consensus 140 ~~-----~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 140 LA-----KRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred HH-----HHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 11 1223 489999999999999999999987643
No 82
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=3.1e-17 Score=97.13 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|||++++.++..+..|+....... ..+.|+++++||+|+.+.. ......... ...+++
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 138 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC-----DSLNIP 138 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-----HHcCCe
Confidence 57889999999999999999999999988776655432 2458999999999986432 222322222 123458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|+++.+.+.++
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999887643
No 83
>KOG0088|consensus
Probab=99.74 E-value=8.2e-18 Score=95.50 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=76.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
-+-||++++++++|||++++++|..+..|+.++.+..+ ....+++|+||+|+.+. ....+...+. +.-+..+
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YA-----esvGA~y 152 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYA-----ESVGALY 152 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHH-----Hhhchhh
Confidence 35699999999999999999999999999988765433 56899999999998653 2333444333 3345679
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++||+.+.||.++|+.|...+.+
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred eecccccccCHHHHHHHHHHHHHH
Confidence 999999999999999999877654
No 84
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.74 E-value=2.1e-17 Score=95.97 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=70.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~ 77 (106)
++..+++++|++++|+|++++.+++.+..|+..+... ....+.|+++|+||+|+... ....+..... ...+
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 139 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA-----TEWN 139 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH-----HHhC
Confidence 5677899999999999999999999888766544321 11246899999999998642 2222222222 1234
Q ss_pred eEEEEccccCCCChHHHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++++||++|.|++++|++|.+.
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHhc
Confidence 689999999999999999999864
No 85
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.74 E-value=6.7e-17 Score=93.69 Aligned_cols=95 Identities=15% Similarity=0.278 Sum_probs=74.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|+.++++++++++|+|++++.++..+..|+..+.... ..+.|+++++||+|+... ....+...... ..+++
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 141 (165)
T cd01868 68 ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLS 141 (165)
T ss_pred HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCE
Confidence 57788999999999999999999999988877665542 235899999999998642 23333333332 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||++|.|++++++++...+
T Consensus 142 ~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 142 FIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 86
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=5.3e-17 Score=95.96 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=71.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcC------CHHHHHHHhCCCCcC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM------SVAEVHRALGLENLK 74 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~~~~~~~~~~~ 74 (106)
+|+.+++++|++++|+|++++.+++.+.. |+...... ..+.|+++++||.|+.... ...+..+...
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----- 137 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK----- 137 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----
Confidence 56778999999999999999999998864 44444322 2468999999999985421 2333333322
Q ss_pred CCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 75 DRTF-QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 75 ~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+. +++++||++|.|++++|..+++.+.+
T Consensus 138 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 138 KQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 1233 89999999999999999999987754
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.74 E-value=3.6e-17 Score=94.44 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=74.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++..+++++|++++|+|++++.++..+..|+..........+.|+++++||+|+... ....+..+... ..++++
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~ 139 (161)
T cd01863 65 LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLF 139 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEE
Confidence 467789999999999999999999988887766655544467999999999998632 23334333332 235689
Q ss_pred EEccccCCCChHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~ 101 (106)
+++||++|.|++++++.+.+.
T Consensus 140 ~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 140 IETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 999999999999999998765
No 88
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=6.3e-17 Score=93.90 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=72.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+....... ..+.|+++|+||+|+... ....+..+... ......
T Consensus 68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 142 (165)
T cd01864 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLA 142 (165)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcE
Confidence 57789999999999999999999998888777665432 246899999999998643 22233333322 112347
Q ss_pred EEEccccCCCChHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++||++|.|++++++++.+.
T Consensus 143 ~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999875
No 89
>PLN03108 Rab family protein; Provisional
Probab=99.73 E-value=8.4e-17 Score=96.92 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=75.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+....... ..+.|+++++||+|+... ....+..+... ..+++
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 144 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLI 144 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCE
Confidence 57789999999999999999999998887776654432 246899999999998653 23344444332 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|++++|+++++.+.+
T Consensus 145 ~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 145 FMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.73 E-value=1.3e-16 Score=92.88 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=75.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~ 76 (106)
+|..+++++|++++++|++++.++.....|...++.... ..+.|+++++||+|+.. .....+...... ...
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~ 140 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNG 140 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcC
Confidence 588899999999999999998888887766655544322 23689999999999863 223444444332 122
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
..+++++||++|.|++++++++.+.+.++
T Consensus 141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 141 NIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999877543
No 91
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.73 E-value=1.2e-16 Score=93.13 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=76.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++..+++++|++++|+|++++.++..+..|+.+..... ..+.|+++++||.|+... ....+...... ..+++
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 142 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLI 142 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCE
Confidence 46778999999999999999999999988887765542 246899999999998632 23444444432 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|++++|.++.+.+.+
T Consensus 143 ~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 92
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.73 E-value=8.2e-17 Score=96.12 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=74.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc---CCHHHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC---MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~ 78 (106)
+|+.|++++|++++|+|++++.+++.+..++..+.......+.|+++++||+|+... .......+... ...+.
T Consensus 63 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~ 138 (198)
T cd04147 63 MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNC 138 (198)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCC
Confidence 577889999999999999999999988877777666443357999999999998542 11222222221 12245
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||++|.|++++|+++.+.+.
T Consensus 139 ~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 139 GFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhh
Confidence 7899999999999999999998764
No 93
>KOG0080|consensus
Probab=99.73 E-value=3.1e-18 Score=97.33 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=78.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+-+.||+++.++|+|||++++++|..+..|+.++-......++-.++|+||+|..+. .+.++-.... +..++-
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfA-----r~h~~L 150 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFA-----RKHRCL 150 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHH-----HhhCcE
Confidence 457899999999999999999999999988877665544467888999999996422 2333333333 456778
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
|++|||++.+||...|+.|+..+.+
T Consensus 151 FiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 151 FIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred EEEcchhhhccHHHHHHHHHHHHhc
Confidence 9999999999999999999987753
No 94
>KOG0074|consensus
Probab=99.73 E-value=7.5e-18 Score=93.98 Aligned_cols=102 Identities=41% Similarity=0.714 Sum_probs=90.5
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
|+|.+||.++|++|+|+|.+++..|+++.+.+.+++....+...|+++..||.|+..+...+++...+....++.+.+++
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHI 156 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEe
Confidence 68999999999999999999999999999989898888777889999999999988777777788777776667788999
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
-+|||.+++|+.+..+|++...
T Consensus 157 q~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eeCccccccCccCcchhhhcCC
Confidence 9999999999999999887543
No 95
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.72 E-value=1.5e-16 Score=91.88 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=76.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+... .....+.+... ..+++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 138 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLP 138 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCe
Confidence 467789999999999999999999988887766655432 47999999999998652 23333433322 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||+++.|++++++++.+.+.++
T Consensus 139 ~~e~Sa~~~~~i~~l~~~i~~~~~~~ 164 (164)
T smart00175 139 FFETSAKTNTNVEEAFEELAREILKR 164 (164)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999988653
No 96
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=1e-16 Score=92.55 Aligned_cols=93 Identities=19% Similarity=0.310 Sum_probs=72.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+... ..+.|+++++||+|+... ....+..+... ..+++
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 139 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLP 139 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCe
Confidence 5788999999999999999999999888877665443 247899999999998643 23333333332 23458
Q ss_pred EEEccccCCCChHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++||+++.|++++++++.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 140 LFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999999764
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.72 E-value=8.4e-17 Score=93.13 Aligned_cols=94 Identities=20% Similarity=0.312 Sum_probs=72.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. ...+... +. ...+++
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~ 140 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQA-FA----QANQLK 140 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHH-HH----HHcCCe
Confidence 57889999999999999999999988887776655442 468999999999985432 2222222 21 123468
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||+++.|++++|+.+++.+
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 141 FFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEEeCCCCCChHHHHHHHHHHh
Confidence 99999999999999999998864
No 98
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=7.4e-17 Score=97.54 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=74.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|+++++++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.... ..... ..+. ...+++
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~-~~l~----~~~~~~ 150 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDG-QALA----EKEGLS 150 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHH-HHHH----HHcCCE
Confidence 57889999999999999999999999888776654432 2468999999999985432 22222 2222 224578
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++...+.+
T Consensus 151 ~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 151 FLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 99
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=1.4e-16 Score=92.95 Aligned_cols=93 Identities=24% Similarity=0.203 Sum_probs=69.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-----CHHHHHHHhCCCCcCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-----SVAEVHRALGLENLKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~ 76 (106)
+|..||+++|++++|+|.+++.+++.+..++..+... .+.|+++|+||+|+.+.. ...++.+.++.
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------ 140 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL------ 140 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC------
Confidence 5778899999999999999998888877666543222 468999999999985432 11223332221
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..++++||++|.|++++|+.+++.+..
T Consensus 141 -~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 141 -PPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred -CCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 135899999999999999999987653
No 100
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=1.5e-16 Score=91.87 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=73.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|+.+++++|++++|+|++++.++..+..|+....... ..+.|+++++||+|+... ....++..... ..+++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 138 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLL 138 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCE
Confidence 57889999999999999999999999888776654322 257899999999998643 23334444332 23478
Q ss_pred EEEccccCCCChHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++||+++.|++++|+++++.
T Consensus 139 ~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 139 FLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 101
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.72 E-value=2e-16 Score=92.09 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (106)
++|+.++++++++++|+|++++.+++....|...........+.|+++++||.|+.... ...+...... .....
T Consensus 64 ~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~ 139 (168)
T cd04177 64 AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNV 139 (168)
T ss_pred hhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCc
Confidence 36888999999999999999999999888776666543333578999999999985432 2222222221 11236
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||+++.|++++|+++.+++.
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 102
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.72 E-value=1.4e-16 Score=92.40 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=71.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
.+..+++++|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+... ....+..+... ..+.
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~ 138 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGC 138 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCC
Confidence 356789999999999999999999988776654443221 246899999999998532 22223222221 1235
Q ss_pred EEEEccccCC-CChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEG-EGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~-~~v~~~~~~l~~~~~ 103 (106)
+++++||++| .|++++|+++++.+.
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 8999999999 599999999998764
No 103
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.71 E-value=1.3e-16 Score=92.10 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=75.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++..++++++++++++|++++.++.....++..+.......+.|+++++||+|+.+. ....+...... ..+.+
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~ 138 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVP 138 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCe
Confidence 467789999999999999999999888888777776543457999999999998652 22222222221 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++++|++++|+++.+.+.+
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 139 YVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987754
No 104
>KOG0091|consensus
Probab=99.71 E-value=1.2e-16 Score=91.09 Aligned_cols=98 Identities=16% Similarity=0.339 Sum_probs=79.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
+-.+||+|+=++++|||.+++.+|+.+..|+.+...+.. ..++-+++|+.|+|+.++ .+.++..... ...++
T Consensus 74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklA-----a~hgM 148 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLA-----ASHGM 148 (213)
T ss_pred HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHH-----HhcCc
Confidence 456899999999999999999999999999988766544 334677899999999754 3334444433 45678
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.|+++||++|.||++.|..|.+.+-.
T Consensus 149 ~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 149 AFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred eEEEecccCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 105
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.71 E-value=2.9e-16 Score=90.74 Aligned_cols=95 Identities=23% Similarity=0.367 Sum_probs=74.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
.|..+++++|++++|+|++++.++.....|+..+..... .+.|+++++||+|+... ....+..+... ..++.
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 139 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLL 139 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCE
Confidence 577899999999999999999999988887777665532 56899999999998632 23333333332 12368
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||++|.|+.++++++.+.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 140 FFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999875
No 106
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.71 E-value=1.3e-16 Score=91.97 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=73.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..++..+..... .+.|+++++||+|+... ....+...... ..+.+
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 138 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAM 138 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCE
Confidence 577889999999999999999999999888877655432 36899999999998432 23333333322 23468
Q ss_pred EEEccccCCCChHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++||+++.|++++++++.+.
T Consensus 139 ~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 139 FIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 107
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.71 E-value=2e-16 Score=92.43 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=68.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------------HHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV--------------AEVHRA 67 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------------~~~~~~ 67 (106)
+|..+++++|++++|+|++++.+++.+...+...+... ..+.|+++++||+|+.+.... .+....
T Consensus 64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (174)
T cd04135 64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL 142 (174)
T ss_pred cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 56778999999999999999999988864344434332 357999999999998543211 111111
Q ss_pred hCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 68 LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 68 ~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
.. .....++++|||++|.|++++|+.+++.+
T Consensus 143 ~~----~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 143 AK----EIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HH----HcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 11 11123799999999999999999998765
No 108
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.71 E-value=3.6e-16 Score=90.04 Aligned_cols=95 Identities=26% Similarity=0.338 Sum_probs=73.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|+.+++++|++++|+|++++.++.....|+.++..... .+.|+++++||+|+... ....++.+... ..+.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 138 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAK 138 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCE
Confidence 578889999999999999999999888877666554322 36899999999998643 23334443332 23467
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||+++.|++++++++.+.+
T Consensus 139 ~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 139 HFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
No 109
>KOG0087|consensus
Probab=99.71 E-value=1e-16 Score=94.56 Aligned_cols=96 Identities=14% Similarity=0.265 Sum_probs=76.7
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
-..||+.+.++++|||++...+|+.+.+|+.++..+.. .+.++++||||+||... ...++..... +..++.+
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~A-----e~~~l~f 153 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFA-----EKEGLFF 153 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHH-----HhcCceE
Confidence 45799999999999999999999999999998877644 57999999999998642 1222222222 4456799
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||.++.|+++.|+.+...+-+
T Consensus 154 ~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 154 LETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred EEecccccccHHHHHHHHHHHHHH
Confidence 999999999999999988877643
No 110
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=5.6e-16 Score=92.00 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=72.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC------CHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM------SVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~~~~~~~~~~~~~~~ 75 (106)
+|..+++++|++++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.+.. ...++.+.. ..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~ 138 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DE 138 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHH-----HH
Confidence 5778899999999999999999998887777665443 1368999999999985321 112222222 12
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+.+++++||++|.|++++|+++++.+.+
T Consensus 139 ~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 139 IKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999987754
No 111
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.70 E-value=2.5e-16 Score=90.98 Aligned_cols=96 Identities=27% Similarity=0.385 Sum_probs=77.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++++||.|+.. .....+..+... ..+.+
T Consensus 64 ~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~ 137 (162)
T PF00071_consen 64 LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVP 137 (162)
T ss_dssp HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCE
Confidence 356789999999999999999999999987777655432 4689999999999875 345555554443 23479
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||+++.|+.++|..+++.+.
T Consensus 138 ~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 138 YFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.70 E-value=2.2e-16 Score=92.37 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=66.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~ 66 (106)
+|+.+++++|++++|||++++.+++.+.. |+...... ..+.|+++++||+|+.... ...+..+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH
Confidence 57788999999999999999999988753 55444332 2468999999999985422 1112222
Q ss_pred HhCCCCcCCCceEEEEccccCCCChHHHHHHHHH
Q psy12794 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
... .....+++++||++|.|++++|+.+..
T Consensus 142 ~a~----~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 142 LAE----KIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHH----HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 111 112238999999999999999998764
No 113
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.70 E-value=2.5e-16 Score=95.52 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=71.2
Q ss_pred hhhc-cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEE
Q psy12794 5 CYYS-NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 5 ~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
.+++ ++|++++|||++++.+++....|+..+.......+.|+++|+||+|+.... ...+..+.. ...+++++
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~ 141 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA-----VVFDCKFI 141 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH-----HHcCCeEE
Confidence 4566 999999999999999999888777666554333578999999999985432 222222222 12346899
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||+++.|++++|+++++.+.
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 114
>KOG0395|consensus
Probab=99.70 E-value=5.2e-16 Score=92.51 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=79.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+-..|+++.|++++||+++++.||+++..++..+.........|+++||||+|+.. ....++..... ...+++
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la-----~~~~~~ 141 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA-----RSWGCA 141 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH-----HhcCCc
Confidence 34678999999999999999999999998888876655556689999999999975 23334433332 445678
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
|+++||+...+++++|..|.+.+..
T Consensus 142 f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 142 FIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EEEeeccCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987754
No 115
>KOG0079|consensus
Probab=99.69 E-value=2.3e-16 Score=88.72 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=76.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 80 (106)
-..||++.+++++|||+++.+||.....|+++..++. ...|-++|+||.|.++.. ..++...+. ...++++
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A-----~~mgie~ 146 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFA-----LQMGIEL 146 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHH-----HhcCchh
Confidence 4569999999999999999999999999999987663 368999999999987653 233344333 3357899
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
|++||++.+|++.+|.-|.++..
T Consensus 147 FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred eehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999998877653
No 116
>PLN03118 Rab family protein; Provisional
Probab=99.69 E-value=8.3e-16 Score=92.60 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=72.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (106)
+|..|++++|++++|+|.+++.++..+..++...+.. ....+.|+++|+||+|+.... ...+...... ..++
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~ 152 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGC 152 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCC
Confidence 5788999999999999999999999887654443332 122457999999999986432 2233322221 2346
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.++++||+++.|++++|++|.+.+.
T Consensus 153 ~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 153 LFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998764
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=2.5e-16 Score=91.54 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~ 77 (106)
.|..+++++|++++|+|++++.+++.+...+.+.+.... .+.|+++|+||+|+.+.... .++..... ....
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~ 137 (166)
T cd01893 63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN----EFRE 137 (166)
T ss_pred HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH----HHhc
Confidence 356678999999999999999999987644444343322 36899999999998654321 11111111 0011
Q ss_pred -eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 -FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 -~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+++++||+++.|++++|+.+.+.+..
T Consensus 138 ~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 138 IETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 379999999999999999999887643
No 118
>KOG0081|consensus
Probab=99.67 E-value=2.9e-16 Score=89.33 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=79.0
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 80 (106)
-..||+++=+++++||.++..||..+..|+-.+..+.-..+..+++.+||+|+.... +..+..... ...++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La-----~kyglPY 158 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALA-----DKYGLPY 158 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHH-----HHhCCCe
Confidence 346899999999999999999999999999887776555678999999999997642 333333333 3456899
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
|++||-+|+||++..+.|.+.+-++
T Consensus 159 fETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999888876554
No 119
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.67 E-value=1.4e-15 Score=89.32 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=76.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..++..++++++++|+++..+++.+..++..+++.....+.|+++++||+|+... ....+..... +..+.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 139 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAA 139 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCe
Confidence 577889999999999999999999999888877777554467899999999998632 2222222222 122358
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|+.+++.++.+.+.+
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 140 FLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987753
No 120
>KOG0086|consensus
Probab=99.66 E-value=1.5e-15 Score=85.91 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=76.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
.-++||+++-+.++|||++++++|+.+..|+.+... ....+.-+++++||.|+..+. ...+..+.. +.+.+.
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~Fa-----qEnel~ 147 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELM 147 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhh-----ccccee
Confidence 347899999999999999999999999999877543 334678899999999986542 233333333 445678
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|+|+++.|-..++.+..+
T Consensus 148 flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred eeeecccccccHHHHHHHHHHHHHHH
Confidence 99999999999999998887766543
No 121
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=3.2e-15 Score=87.40 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=66.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHH-------------HH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSV-AEV-------------HR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~-------------~~ 66 (106)
+|..+++++|++++|+|++++.+++.+.. |...+... ..+.|+++++||+|+...... .++ .+
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 142 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHH
Confidence 45567899999999999999988888764 44333322 246899999999998543111 111 11
Q ss_pred HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
... .....++++|||++|.|++++|+++.+.+
T Consensus 143 ~~~----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 143 MAN----KIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHH----HcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 110 11234899999999999999999998764
No 122
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=1.6e-15 Score=87.19 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=74.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++..+++++|++++|+|++++.++.+...++..+.......++|+++++||+|+... ....++.+... ..+.+
T Consensus 63 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 137 (160)
T cd00876 63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCP 137 (160)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCc
Confidence 466789999999999999999998888887777666543357999999999998652 23333433332 12368
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||+++.|+++++++|.+.+
T Consensus 138 ~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 138 FIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred EEEeccCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998753
No 123
>KOG0083|consensus
Probab=99.64 E-value=1.4e-16 Score=88.23 Aligned_cols=94 Identities=20% Similarity=0.271 Sum_probs=73.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-c----CCHHHHHHHhCCCCcCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-C----MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~----~~~~~~~~~~~~~~~~~~~ 77 (106)
-..||+++|+++++||++++.||+.++.|+.++-. .....+.+.+++||+|+.. . ..-+...+. .+
T Consensus 64 t~ayyrda~allllydiankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~--------y~ 134 (192)
T KOG0083|consen 64 THAYYRDADALLLLYDIANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA--------YG 134 (192)
T ss_pred hHhhhcccceeeeeeecccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHH--------HC
Confidence 35699999999999999999999999998876543 2224688999999999843 1 122233333 35
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+|+.++||++|-|++-.|..+++.+.++
T Consensus 135 ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 135 IPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred CCceeccccccccHhHHHHHHHHHHHHh
Confidence 6999999999999999999999887653
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=4.4e-15 Score=86.28 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=69.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (106)
.+..+++.+|++++|+|++++.++..+..|+..+.. ....+.|+++++||+|+..... ..+..+.+. +....++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~ 146 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYY 146 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeE
Confidence 356789999999999999998888877766654332 2224689999999999864321 122222222 1123579
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+++||++|.|+.++|+++.+.+
T Consensus 147 ~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 147 LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=4.6e-15 Score=84.82 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=72.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC--CcCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK--NCMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+..+..... .+.|+++++||+|+. ......++.+... ..+.+
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~ 138 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLL 138 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCe
Confidence 467889999999999999998889888887766655422 468999999999984 3334455554443 24578
Q ss_pred EEEccccCCCChHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLS 99 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~ 99 (106)
++++||+++.|+++++.++.
T Consensus 139 ~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEEecCCCCCHHHHHHHHh
Confidence 99999999999999999886
No 126
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.63 E-value=6.7e-15 Score=87.17 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=67.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcC------------CHHHHHHHhC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM------------SVAEVHRALG 69 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~ 69 (106)
++.+++++|++++++|++++.+++++.. |+..+.+.. .+.|+++|+||+|+.... ...+......
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH
Confidence 3456889999999999999999998864 555444332 469999999999984321 1111111111
Q ss_pred CCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 70 LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.....++++|||++|.|++++|+++.+.+.
T Consensus 144 ----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 144 ----EIGAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred ----HhCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 111247999999999999999999997664
No 127
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.63 E-value=5.4e-15 Score=85.98 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-------------HHHHHHHhC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-------------VAEVHRALG 69 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-------------~~~~~~~~~ 69 (106)
+..+++.+|++++|+|++++.++......+...+.... .+.|+++|+||+|+..... ..+..+...
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 45667899999999999998888877654444333322 3799999999999865432 112222221
Q ss_pred CCCcCCCceEEEEccccCCCChHHHHHHHHH
Q psy12794 70 LENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
.....+++++||++|.|++++++++.+
T Consensus 144 ----~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 ----EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ----HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 112338999999999999999999875
No 128
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=3e-14 Score=86.04 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=73.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|+++++++++|+|++++.++..+..|+..+... ..+.|+++++||+|+.......+..+.. ...++.++
T Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 146 (215)
T PTZ00132 74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYY 146 (215)
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEE
Confidence 5678899999999999999999999888777665533 2468999999999985432212222222 22356899
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|+++.|.++++.+..
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999987753
No 129
>KOG0095|consensus
Probab=99.59 E-value=3.6e-15 Score=84.13 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=74.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+-.+||+.+|++|++||++-.++|+=+.+|+.++-+. ...++-.++|+||+|+.+. ....++.+.+. +.....|
T Consensus 72 itqsyyrsahalilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyf 146 (213)
T KOG0095|consen 72 ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYF 146 (213)
T ss_pred HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHH----Hhhhhhh
Confidence 3457999999999999999999999988888776543 2245778999999998643 22233333333 3345678
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++..|++.+|..++..+..
T Consensus 147 letsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999877653
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.59 E-value=2.1e-14 Score=83.46 Aligned_cols=91 Identities=23% Similarity=0.229 Sum_probs=64.7
Q ss_pred hccCCeEEEEEECCCc-chHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCcCCHHH-HHHHhCCCCcCCCceEEEEc
Q psy12794 7 YSNTDAIIYVVDSSDR-DRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNCMSVAE-VHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (106)
+.++|++++|+|++++ .+++....+...+.... ...++|+++|+||+|+.+.....+ ..+... .....+++++
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~ 151 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPI 151 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEE
Confidence 3459999999999988 67777766655544321 124689999999999865433222 222222 1134679999
Q ss_pred cccCCCChHHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~ 101 (106)
||+++.|++++++++.+.
T Consensus 152 Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 152 SALTGEGLDELLRKLAEL 169 (170)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 131
>KOG0097|consensus
Probab=99.58 E-value=4.1e-14 Score=79.32 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=75.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
-++||+++-+.++|+|++.+.++..+..|+.....- ...+..+++++||.|+..+ ...++..+.. +.+++-+
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fa-----eengl~f 150 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFA-----EENGLMF 150 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHH-----hhcCeEE
Confidence 367999999999999999999999999888775432 2356789999999998754 3344444443 4567899
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|+|+++.|-..++.+-+
T Consensus 151 le~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 151 LEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred EEecccccCcHHHHHHHHHHHHHH
Confidence 999999999999999887776643
No 132
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.57 E-value=2.3e-14 Score=88.16 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=67.4
Q ss_pred chhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-AEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (106)
+.+.|++++|++++|+|++++. ++..+..|+... .. .+.|+++|+||+|+.+.... .+..+.+. ..+++
T Consensus 29 L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-----~~g~~ 99 (245)
T TIGR00157 29 LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-----NIGYQ 99 (245)
T ss_pred EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-----HCCCe
Confidence 4466899999999999999876 888888777543 22 56899999999998643221 12223332 24578
Q ss_pred EEEccccCCCChHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~ 100 (106)
++++||++|.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=4e-14 Score=90.43 Aligned_cols=95 Identities=23% Similarity=0.182 Sum_probs=67.9
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHH--HHHHHhCCCCcCCCceEEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVA--EVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (106)
.+++.++++++|+|+++..++++...|..++... ..+.++|+++|+||+|+....... ...... ...+.+++
T Consensus 232 rhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~-----~~~~~~i~ 306 (335)
T PRK12299 232 KHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL-----AALGGPVF 306 (335)
T ss_pred HHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH-----HhcCCCEE
Confidence 3567899999999999877777777666555432 123478999999999986533211 122221 11235799
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++++|++++++++.+.+.+
T Consensus 307 ~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 307 LISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987753
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.57 E-value=2.7e-14 Score=83.73 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=64.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~ 78 (106)
+|..+++++|++++|+|++++.++.....+. ... . .++|+++++||+|+.+.... .++.+.++. ...
T Consensus 83 ~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~ 152 (179)
T cd01890 83 EVSRSLAACEGALLLVDATQGVEAQTLANFY-LAL-E---NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DPS 152 (179)
T ss_pred HHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHH-H---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Ccc
Confidence 4678899999999999998876655544332 222 1 36899999999998643211 223333321 123
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||++|.|++++++++.+.+.
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred cEEEeeccCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999998764
No 135
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=8.8e-14 Score=88.73 Aligned_cols=93 Identities=26% Similarity=0.259 Sum_probs=64.9
Q ss_pred hhccCCeEEEEEECCCc---chHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+++.++++++|+|+++. .++++...+..++... ..+.++|+++|+||+|+.......+..+.+. +..+.+++
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi 307 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVF 307 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEE
Confidence 45679999999999875 4556555544443322 1235789999999999865433333333332 12235799
Q ss_pred EccccCCCChHHHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++||++++|++++++++.+.+
T Consensus 308 ~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 308 PISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEccCCcCHHHHHHHHHHHh
Confidence 999999999999999998765
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.52 E-value=1.5e-13 Score=79.76 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCeEEEEEECCCcchH--HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 10 TDAIIYVVDSSDRDRI--GISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
+|++++|+|++++.++ +....++..+... ..+.|+++++||+|+.......+..+.. .....+++++||++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~ 152 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----ELEGEEVLKISTLT 152 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----hhccCceEEEEecc
Confidence 6899999999876543 4444444443222 1378999999999986533222222221 22456899999999
Q ss_pred CCChHHHHHHHHHHH
Q psy12794 88 GEGLNDSMDWLSNAL 102 (106)
Q Consensus 88 ~~~v~~~~~~l~~~~ 102 (106)
|.|++++++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998875
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.51 E-value=8.2e-14 Score=78.99 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=57.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
+++++|++++|+|++++.++... . +... ...|+++++||+|+.+. ....+..+.... ....+++++|
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~-~-~~~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~S 126 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP-G-FASI------FVKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEIS 126 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh-h-HHHh------ccCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEe
Confidence 47899999999999998876542 2 2222 13599999999998642 223333333321 1123789999
Q ss_pred ccCCCChHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLS 99 (106)
Q Consensus 85 a~~~~~v~~~~~~l~ 99 (106)
|++|.|++++|+++.
T Consensus 127 a~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 127 SVDEQGLEALVDYLN 141 (142)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999999875
No 138
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=3.8e-13 Score=89.51 Aligned_cols=93 Identities=19% Similarity=0.140 Sum_probs=64.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|++++.++.+.. ++.. +.. .++|+++|+||+|+.+........+.+..........+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~-~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSM-VIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHH-HHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999887777654 2322 222 46899999999998643222222222211111223357899999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
++|.|++++|+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 139
>KOG0077|consensus
Probab=99.48 E-value=8.1e-14 Score=79.75 Aligned_cols=101 Identities=35% Similarity=0.601 Sum_probs=83.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC----------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE---------- 71 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---------- 71 (106)
.|..|+..+|++++++|+-+.+.+.+....+..++....+.+.|+++.+||+|.+.+...++..-.++..
T Consensus 80 ~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~ 159 (193)
T KOG0077|consen 80 VWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVN 159 (193)
T ss_pred HHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccc
Confidence 5999999999999999999999999999989888888777899999999999998877666554433311
Q ss_pred --CcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 72 --NLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 72 --~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
....+.+.++.||...+.|..+.|.|+...+
T Consensus 160 ~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 160 LTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 1123457899999999999999999987654
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.47 E-value=4.6e-13 Score=80.21 Aligned_cols=87 Identities=26% Similarity=0.334 Sum_probs=62.5
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
+.++|++++|+|++++.++..... +.+.+......++|+++|+||+|+...... ...+ .....+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~---~~~~-----~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEEL---EERL-----EAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHHH---HHHh-----hcCCCceEEEEcC
Confidence 678999999999998877665543 233444333356899999999998643221 1111 2234579999999
Q ss_pred CCCChHHHHHHHHHHH
Q psy12794 87 EGEGLNDSMDWLSNAL 102 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~~ 102 (106)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998653
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.46 E-value=6.9e-13 Score=76.12 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=60.0
Q ss_pred hhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+..++. ++|++++|+|.+++..... ++.... . .++|+++++||+|+..........+.+. ...+.++
T Consensus 66 ~~~~~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~ 134 (158)
T cd01879 66 ARDFLLGEKPDLIVNVVDATNLERNLY---LTLQLL-E---LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPV 134 (158)
T ss_pred HHHHhcCCCCcEEEEEeeCCcchhHHH---HHHHHH-H---cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCe
Confidence 556665 9999999999987544322 222222 2 3689999999999865321111111221 1224589
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+++||.++.|+.++++++.+.+
T Consensus 135 ~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 135 VPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 142
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=6.7e-13 Score=87.33 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=64.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
.+++.+|++++|+|++++.+..+.. +...... .++|+++|+||+|+. +.....++.+.+..........+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR--IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH--HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 3678999999999999876655443 2233222 468999999999986 222223333333211112235789999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++|.|++++++++.+...
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.45 E-value=8.9e-13 Score=82.22 Aligned_cols=91 Identities=24% Similarity=0.235 Sum_probs=62.3
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH-HHHHHhCCCCcCCCceEEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA-EVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 82 (106)
..+++++|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+....... ...+.... ....++++
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~v~~ 143 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----EDFKDIVP 143 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh----cCCCceEE
Confidence 45678999999999998876653 223343433 468999999999985322111 12222111 11127899
Q ss_pred ccccCCCChHHHHHHHHHHHhh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+||++|.|++++++++.+.+..
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999887653
No 144
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.45 E-value=5.7e-13 Score=76.84 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+++++.+++|++++|+|++++....+. .+..+... .++|+++++||+|+.+........... ...+.+++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 74 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIPVV 74 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCcEE
Confidence 466788899999999999775432221 23333322 368999999999985321111111111 11235789
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+||+++.|++++++.+.+.+.
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEccccccHHHHHHHHHHHHh
Confidence 9999999999999999987664
No 145
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.44 E-value=6.3e-13 Score=77.51 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=63.9
Q ss_pred hhhccCCeEEEEEECCCc------chHHHHHHHHHHHhcCcC------CCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDR------DRIGISKEELLAMLKEEE------LRDAILVILANKQDMKNCMSVAEVHRALGLEN 72 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 72 (106)
.+++++|++++|+|.+++ .++.+...+......... ..++|+++++||+|+............. .
T Consensus 70 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~ 146 (176)
T cd01881 70 AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---L 146 (176)
T ss_pred HHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---H
Confidence 357889999999999887 466666555554443221 1468999999999986543222221001 1
Q ss_pred cCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 73 LKDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 73 ~~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
......+++++||+++.|++++++++...
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 12235579999999999999999998764
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.44 E-value=1.1e-12 Score=84.44 Aligned_cols=86 Identities=26% Similarity=0.264 Sum_probs=60.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|++++.+.+.... +.+.+......++|+++|+||+|+.... ++..... ...+++.+||
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSA 334 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSA 334 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEc
Confidence 4789999999999998877665543 2233333333478999999999986432 2222111 1135799999
Q ss_pred cCCCChHHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSNA 101 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~ 101 (106)
++|.|++++++++.+.
T Consensus 335 ktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 335 KTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 147
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.44 E-value=4.1e-12 Score=74.82 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=67.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCc----
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENL---- 73 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~---- 73 (106)
.|..+++++|++++|+|++++.+..... .+ ..... .+.|+++++||+|+..... ..++.+.+.....
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQTRE-HL-RIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHHHH-HH-HHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 3677889999999999998765443222 22 22222 4789999999999865322 2234444432211
Q ss_pred -----CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 74 -----KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 74 -----~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.....+++++||++|.|+++++.++.+.+.
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 224678999999999999999999998775
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.43 E-value=2.4e-12 Score=72.61 Aligned_cols=93 Identities=33% Similarity=0.462 Sum_probs=66.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHH--HHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV--HRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (106)
|..+++++|++++|+|++++.+......++..........++|+++++||+|+......... ..... .....++
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~ 137 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPY 137 (157)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcE
Confidence 45578899999999999998887777655323333333467999999999998654332222 11111 2345789
Q ss_pred EEccccCCCChHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLS 99 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~ 99 (106)
+++|+.++.|+.++++++.
T Consensus 138 ~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTGENVEELFEELA 156 (157)
T ss_pred EEEecCCCCChHHHHHHHh
Confidence 9999999999999999875
No 149
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.43 E-value=1.1e-12 Score=75.97 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=62.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|+++..++.. .++... . .++|+++++||+|+.. .....+.+.+... ....+++++||
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~--~~~~~~--~---~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~---~~~~p~~~~Sa 129 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLP--AGLLDI--G---VSKRQIAVISKTDMPD-ADVAATRKLLLET---GFEEPIFELNS 129 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccC--HHHHhc--c---CCCCeEEEEEccccCc-ccHHHHHHHHHHc---CCCCCEEEEEC
Confidence 3689999999999987765422 223332 1 3579999999999854 2334444433211 11258999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q psy12794 86 KEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~~ 104 (106)
++|+|++++++.+.+.+..
T Consensus 130 ~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCccCHHHHHHHHHHhchh
Confidence 9999999999999987754
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=1.9e-12 Score=86.18 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=62.3
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+..+++++|++++|+|++++.++.+. .+...+.. .++|+++|+||+|+..... +..+.+.. ..+ ..++
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~ 178 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDE--AVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHP 178 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEE
Confidence 45688999999999999987665432 23344433 5789999999999854221 12222221 111 3468
Q ss_pred ccccCCCChHHHHHHHHHHHhh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+||++|.|++++++++.+.+.+
T Consensus 179 iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 179 VSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEcCCCCCcHHHHHHHHhhccc
Confidence 9999999999999999987643
No 151
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.41 E-value=1.7e-12 Score=86.31 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=62.0
Q ss_pred hhccCCeEEEEEECCCc----chHHHHH---HHHHHHhcCc-------CCCCCeEEEEeeCCCCCCcCCHH-HHHHHhCC
Q psy12794 6 YYSNTDAIIYVVDSSDR----DRIGISK---EELLAMLKEE-------ELRDAILVILANKQDMKNCMSVA-EVHRALGL 70 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~----~~~~~~~---~~~~~~~~~~-------~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~ 70 (106)
++++||++++|+|+++. +.+.+.. ..+..+.... .+.++|.++|+||+|+++..... .+.+.+.
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~- 311 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE- 311 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-
Confidence 46789999999999752 2333333 2333332210 23578999999999986532221 2222221
Q ss_pred CCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 71 ~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
..+++++.+||++++|+++++.+|.+.+.
T Consensus 312 ----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 312 ----ARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred ----HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22568999999999999999999988774
No 152
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.41 E-value=3.6e-12 Score=73.85 Aligned_cols=96 Identities=27% Similarity=0.261 Sum_probs=62.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHh---CCCC--cCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRAL---GLEN--LKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~--~~~~ 76 (106)
+|..++..+|++++|+|+++........ .+ ..+.. .++|+++++||+|+.+.. ...+...+ .... ....
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIE-AI-KLAKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGG 139 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHH-HH-HHHHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccC
Confidence 4677889999999999998753222111 12 12222 468999999999986432 22222211 1110 0123
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
..+++++||++|.|++++++++.+...
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 140 DVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 468999999999999999999988764
No 153
>KOG0393|consensus
Probab=99.40 E-value=2.2e-12 Score=76.43 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=69.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC---------C
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE---------N 72 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---------~ 72 (106)
+|+..|.++|.++++|++.++.+++.+..-|...+++.. .+.|+++||+|.|+.......+-.+..+.. .
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 455678999999999999999999997754444344322 679999999999997432110000000000 0
Q ss_pred c-CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 73 L-KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 73 ~-~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
. +.....|++|||++..|+.++|+.......
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 0 112368999999999999999998887653
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.40 E-value=2.9e-12 Score=82.19 Aligned_cols=89 Identities=16% Similarity=0.315 Sum_probs=62.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|.++ ++.+...++...+.. .+.|.++|+||+|+... ...++.+.+.. ......++++||
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEec
Confidence 4689999999999765 444444444444433 34677899999998643 33444444431 112357999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
++|.|++++++++.+.+.
T Consensus 199 ktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cCccCHHHHHHHHHHhCC
Confidence 999999999999998765
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=4.5e-12 Score=72.54 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=59.3
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
..+++++|++++|+|..++.+.... .+.+.+.. .+.|+++++||+|+...... ...+.. ....+++++
T Consensus 71 ~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~ 138 (157)
T cd01894 71 ELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPI 138 (157)
T ss_pred HHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEE
Confidence 3567899999999999765444332 23344443 35899999999998653221 122211 111267999
Q ss_pred cccCCCChHHHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~ 102 (106)
|++++.|++++++++.+++
T Consensus 139 Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 139 SAEHGRGIGDLLDAILELL 157 (157)
T ss_pred ecccCCCHHHHHHHHHhhC
Confidence 9999999999999998753
No 156
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=6e-12 Score=72.98 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=61.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
+++++|++++|+|++++.+..... +...... .++|+++++||+|+... .....+.+.+..........+++.+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR--IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH--HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 467899999999998876654432 2222222 36899999999998654 2223333333211111124689999
Q ss_pred cccCCCChHHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~ 101 (106)
||+++.|+.++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 157
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.38 E-value=3.4e-12 Score=73.60 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=56.7
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~ 80 (106)
.+++++|++++|+|+++..... ....+. .+... ..+|+++++||+|+..... ..++.+.+... ...+.++
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~-~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 143 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQ-TREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPI 143 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHh-HHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcE
Confidence 4678999999999997632111 111111 11111 2359999999999865321 12333333311 1135689
Q ss_pred EEccccCCCChHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~ 100 (106)
+++||+++.|++++++.+..
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999998754
No 158
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.38 E-value=2.1e-12 Score=77.49 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=47.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc------------------CCCCCeEEEEeeCCCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE------------------ELRDAILVILANKQDMKN 57 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~p~ilv~nK~D~~~ 57 (106)
+++.||+++|++|+|||++++.+++.+..|+.++.... ...+.|+++|+||.|+.+
T Consensus 70 l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 70 TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 57889999999999999999999999999888776521 123689999999999854
No 159
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=9.2e-12 Score=81.75 Aligned_cols=91 Identities=21% Similarity=0.228 Sum_probs=61.4
Q ss_pred hhccCCeEEEEEECCCc---chHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+++.++++++|+|+++. .++++...+..++... ..+.++|.++|+||+|+... ...+.+... ....+++
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~-----~l~~~i~ 305 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE-----KLGPKVF 305 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH-----HhCCcEE
Confidence 35569999999999754 4555554444333322 22357999999999998532 222222211 0114789
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+||++++|++++++++.+.+.
T Consensus 306 ~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 306 PISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 160
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=7.1e-12 Score=82.69 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=63.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++.+|++++|+|++++.+..+.. +...... .++|+++++||+|+.+.....++.+.+..........+++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR--IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 578999999999999876655543 2233332 46899999999998643223333333332111224568999999
Q ss_pred cCCCChHHHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~ 102 (106)
++|.|++++++.+.+..
T Consensus 327 ~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887654
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.36 E-value=4.3e-12 Score=76.18 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=58.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~ 80 (106)
....++|++++|+|++++.........+..+ ... ..+|+++++||+|+.+.... .++.+.+... .....++
T Consensus 102 ~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~--~~~~~~i 176 (203)
T cd01888 102 SGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGT--IAENAPI 176 (203)
T ss_pred HhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhcc--ccCCCcE
Confidence 3456789999999998642111111122222 111 23579999999998642211 2222322211 1134679
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+.+||++|.|++++++++.+.+.
T Consensus 177 ~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 177 IPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred EEEeCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999998765
No 162
>PRK04213 GTP-binding protein; Provisional
Probab=99.35 E-value=9.8e-12 Score=74.29 Aligned_cols=99 Identities=23% Similarity=0.238 Sum_probs=59.4
Q ss_pred chhhhhc----cCCeEEEEEECCCcchH----H-----HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHH
Q psy12794 2 YWRCYYS----NTDAIIYVVDSSDRDRI----G-----ISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~----~~d~~i~v~d~~~~~~~----~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~ 66 (106)
+|..|++ .++++++|+|.++.... . .....+...+.. .++|+++|+||+|+.... ...++.+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 155 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAE 155 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHH
Confidence 3555654 35788899998643211 0 011112233332 468999999999986432 2233444
Q ss_pred HhCCCC-cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 67 ALGLEN-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 67 ~~~~~~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++... ......+++++||++| |+++++++|.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 443210 0111236899999999 999999999987653
No 163
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.35 E-value=1.7e-11 Score=69.84 Aligned_cols=94 Identities=27% Similarity=0.236 Sum_probs=64.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+..+++++|++++++|.+++.+..... +... ... .+.|+++++||+|+.......................++++
T Consensus 69 ~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~-~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd00880 69 ARRVLERADLILFVVDADLRADEEEEK-LLEL-LRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIA 143 (163)
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEE
Confidence 345789999999999999876655443 1222 222 57899999999998654333222110111111345678999
Q ss_pred ccccCCCChHHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~ 101 (106)
+||.++.|++++++++.+.
T Consensus 144 ~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 VSALTGEGIDELREALIEA 162 (163)
T ss_pred EeeeccCCHHHHHHHHHhh
Confidence 9999999999999998865
No 164
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.34 E-value=3.5e-12 Score=75.76 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=60.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHh---CCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRAL---GLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~---~~~~~~~~~ 77 (106)
+|..|++++|++++|+|++++..... . .+ ... ..++|+++|+||+|+.... ......... .........
T Consensus 27 ~l~~~~~~ad~il~VvD~~~~~~~~~-~-~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 27 LLSSISPKKALVVHVVDIFDFPGSLI-P-RL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHhcccCCcEEEEEEECccCCCccc-h-hH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 56778999999999999987542111 1 11 111 1468999999999986432 222222221 000001111
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
..++.+||++|.|++++++.+.+.+.
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999988763
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.34 E-value=2.7e-11 Score=79.74 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=60.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE-EEEcc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ-IFKTS 84 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 84 (106)
+++++|++++|+|++++.++..... +...+......++|+++|+||+|+..... ..... .. .+.+ ++.+|
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~-~~------~~~~~~v~IS 343 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDR-DE------ENKPIRVWLS 343 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHH-Hh------cCCCceEEEe
Confidence 3689999999999999876666532 22333322224689999999999864311 11111 10 1122 57899
Q ss_pred ccCCCChHHHHHHHHHHHh
Q psy12794 85 AKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~ 103 (106)
|++|.|++++++++.+.+.
T Consensus 344 AktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999998774
No 166
>PRK12289 GTPase RsgA; Reviewed
Probab=99.34 E-value=1e-11 Score=79.93 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=61.6
Q ss_pred hhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+.+++++|.+++|+|+.++. .+..+..++... .. .++|+++|+||+|+.+........+.+ ...++.++.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 45689999999999998765 444445555433 22 578999999999986432122222333 223567899
Q ss_pred ccccCCCChHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~ 100 (106)
+||+++.|++++++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999988764
No 167
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.32 E-value=2e-11 Score=84.81 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=63.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|++++.+..+.. .+... .. .++|+++|+||+|+.+......+.+.+..........+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~-~~---~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMA-VD---AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHH-HH---cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999887776654 23222 22 46899999999998653222223222221110112346789999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
++|.|++++++.+.+...
T Consensus 604 ktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.32 E-value=1.3e-11 Score=81.83 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=60.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|.+++.++.+... +.. ..++|+++|+||+|+.+..... . ....+++++||
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------~-----~~~~~~i~iSA 352 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------E-----ENGKPVIRISA 352 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------h-----ccCCceEEEEe
Confidence 6889999999999998877665432 222 2568999999999986432211 1 12347899999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
++|.|++++++++.+.+.
T Consensus 353 ktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 353 KTGEGIDELREAIKELAF 370 (449)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.31 E-value=3.1e-11 Score=68.99 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=60.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
++.++|++++|+|++++.+......+.. ..++|+++++||+|+.+.... .. .....+++++||
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~------~~----~~~~~~~~~~Sa 139 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL------LS----LLAGKPIIAISA 139 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc------cc----ccCCCceEEEEC
Confidence 5678999999999998766655432211 256899999999998653321 11 233568999999
Q ss_pred cCCCChHHHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~ 102 (106)
+++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998764
No 170
>KOG3883|consensus
Probab=99.31 E-value=5.4e-11 Score=67.62 Aligned_cols=96 Identities=21% Similarity=0.343 Sum_probs=73.2
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHHHHHhCCCCcCCCceEEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-AEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+||+.-+|++++||++.++.||+.....-.++-++.....+|+++++||+|+.+.... ..+.+... +...+..++
T Consensus 79 rhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa----~rEkvkl~e 154 (198)
T KOG3883|consen 79 RHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA----KREKVKLWE 154 (198)
T ss_pred HhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHH----hhhheeEEE
Confidence 6899999999999999999999887754444444555567999999999998543211 12333222 445678999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++|.++..+-+.|..++..+.
T Consensus 155 Vta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 155 VTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred EEeccchhhhhHHHHHHHhcc
Confidence 999999999999999987653
No 171
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.29 E-value=5.8e-11 Score=80.99 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=65.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~ 78 (106)
.|..+++.+|++++|+|+++..+......+.. ... .+.|+++++||+|+...... .++.+.++. ...
T Consensus 86 ~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~-----~~~ 155 (595)
T TIGR01393 86 EVSRSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL-----DAS 155 (595)
T ss_pred HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----Ccc
Confidence 46788999999999999998766655443332 222 35799999999998643211 233333321 112
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||++|.|++++++++.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999988764
No 172
>KOG4252|consensus
Probab=99.29 E-value=7.5e-12 Score=72.83 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
..||+++.+.++||+.+++.||+....|..+..+.. .+.|.++|-||+|+.++. ...++..... ...+.+.
T Consensus 87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak-----~l~~Rly 159 (246)
T KOG4252|consen 87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-----KLHKRLY 159 (246)
T ss_pred HHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHH-----Hhhhhhh
Confidence 369999999999999999999999998888877653 579999999999987542 3333433332 2245678
Q ss_pred EccccCCCChHHHHHHHHHHHhhc
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
.+|+++..|+..+|..|+..+.++
T Consensus 160 RtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 160 RTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999876543
No 173
>PRK00089 era GTPase Era; Reviewed
Probab=99.28 E-value=4e-11 Score=75.52 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=62.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
.++.++|++++|+|++++.+ ....++...+.. .+.|+++|+||+|+... ....+..+.+.. .....+++.+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~i 151 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPI 151 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEe
Confidence 45789999999999987322 222334444443 46899999999998632 222223333321 1124579999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||+++.|++++++++.+.+.
T Consensus 152 SA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999998764
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.27 E-value=4e-11 Score=78.16 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=63.3
Q ss_pred hhccCCeEEEEEECC---CcchHHHHHHHHHHHhcC-cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 6 YYSNTDAIIYVVDSS---DRDRIGISKEELLAMLKE-EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+++++|++++|+|++ +...+++...++.++... ..+.++|.++|+||+|+.......+..+.+... .....+++
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi 311 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVY 311 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEE
Confidence 578899999999987 344555554444443331 123468999999999986432222222222100 01123689
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+||+++.|++++++++.+.+.+
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhh
Confidence 99999999999999999988753
No 175
>PRK00098 GTPase RsgA; Reviewed
Probab=99.27 E-value=1.5e-11 Score=77.70 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=57.0
Q ss_pred ccCCeEEEEEECCCcchHHH-HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGI-SKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
.++|.+++|+|++++..... +..++... .. .++|+++|+||+|+.... ...+..+.+ ...+++++.+||
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vSA 149 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELSA 149 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEeC
Confidence 89999999999987755443 34444332 33 568999999999985321 111222222 123468999999
Q ss_pred cCCCChHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLS 99 (106)
Q Consensus 86 ~~~~~v~~~~~~l~ 99 (106)
+++.|++++++.+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998764
No 176
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=68.02 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=74.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
||..+.+++.++|+++|.+.+..+.+ . .+.+++... ...|+++++||.|+.+....+++.+.+.... ...+++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi 156 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVI 156 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCcee
Confidence 68999999999999999998888732 2 355666552 2289999999999998888888888886421 367999
Q ss_pred EccccCCCChHHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~ 101 (106)
..+|.++.|..+..+.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999888877654
No 177
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.27 E-value=6e-11 Score=67.47 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=63.2
Q ss_pred chhhhhccCCeEEEEEECCCc-chHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDR-DRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..++++++.++.++|.... .++.+.. .+......... .+.|+++++||+|+.......+....+. .....+
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~ 140 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA----KLNGEP 140 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh----hccCCc
Confidence 567778899999999998765 4554444 33333322221 2789999999999865432333444433 223456
Q ss_pred EEEccccCCCChHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLS 99 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~ 99 (106)
++++||.++.|+.+++++|.
T Consensus 141 ~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 141 IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred eEEeecCCCCCHHHHHHHhh
Confidence 99999999999999999864
No 178
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.26 E-value=7e-11 Score=70.27 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=58.9
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCC--cCCCceEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLEN--LKDRTFQIF 81 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~--~~~~~~~~~ 81 (106)
..+|++++|+|+++.........+. .... .+.|+++++||+|+..... ..++.+.++... ....+++++
T Consensus 90 ~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 90 QIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred hhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 4578999999998754433322111 1121 3579999999999864322 122222221000 012357899
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|+++++++|.+++..
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred EEeccCCCCHHHHHHHHHhcccc
Confidence 99999999999999999988753
No 179
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.26 E-value=1e-10 Score=70.62 Aligned_cols=103 Identities=27% Similarity=0.308 Sum_probs=68.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH-HHHHHh----------C
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA-EVHRAL----------G 69 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~----------~ 69 (106)
++|+.|+.+++++++++|.+...++.+....+...+......+.|+++++||+|+....... .+.+.. .
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP 148 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHh
Confidence 36899999999999999999865666655545444443322468999999999987542211 111110 0
Q ss_pred CCCc-CCCceEEEEcccc--CCCChHHHHHHHHHHHh
Q psy12794 70 LENL-KDRTFQIFKTSAK--EGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 70 ~~~~-~~~~~~~~~~sa~--~~~~v~~~~~~l~~~~~ 103 (106)
.... ......++++|++ ++.++.++|..+...+.
T Consensus 149 ~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 149 KAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred HHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 0000 1122348999999 99999999999888774
No 180
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.25 E-value=7.8e-11 Score=68.06 Aligned_cols=90 Identities=21% Similarity=0.210 Sum_probs=59.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
.++++|.+++|+|++++.... ...+.+.+... ..++|+++|+||+|+.+.....+..+.+. +......+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEeec
Confidence 468999999999998763221 12233444321 23589999999999854322223333333 112334688999
Q ss_pred cCCCChHHHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~ 102 (106)
+.+.|++++.+.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987654
No 181
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.25 E-value=4.7e-11 Score=75.13 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=61.0
Q ss_pred hccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 7 YSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+.++|.+++|+|++++. ++..+..++..... .++|+++|+||+|+.+..........+ ...+.+++.+||
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~vSA 146 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLAVSA 146 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEEEEC
Confidence 78999999999999887 77777765554332 468999999999986431111111111 123568999999
Q ss_pred cCCCChHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSN 100 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~ 100 (106)
+++.|+++++..+..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999887764
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.25 E-value=5.9e-11 Score=71.29 Aligned_cols=99 Identities=21% Similarity=0.329 Sum_probs=66.7
Q ss_pred chhhhhccC-CeEEEEEECCCc-chHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCHHHHHHHhC--------
Q psy12794 2 YWRCYYSNT-DAIIYVVDSSDR-DRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSVAEVHRALG-------- 69 (106)
Q Consensus 2 ~~~~~~~~~-d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------- 69 (106)
.|..+++++ +++|+|+|+++. .++.+...++..++..... .+.|+++++||+|+........+.+.+.
T Consensus 64 ~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~ 143 (203)
T cd04105 64 KLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRE 143 (203)
T ss_pred HHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 467789998 999999999987 6777777777666543221 4689999999999865432221111110
Q ss_pred -----CC------------------Cc----CCCceEEEEccccCCC-ChHHHHHHHHH
Q psy12794 70 -----LE------------------NL----KDRTFQIFKTSAKEGE-GLNDSMDWLSN 100 (106)
Q Consensus 70 -----~~------------------~~----~~~~~~~~~~sa~~~~-~v~~~~~~l~~ 100 (106)
.. .+ ....+.++++|++.+. |++++.+|+.+
T Consensus 144 ~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 144 SRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 00 1124679999999876 69999998864
No 183
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.25 E-value=4.7e-11 Score=71.12 Aligned_cols=88 Identities=22% Similarity=0.177 Sum_probs=54.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCC--CcCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLE--NLKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~--~~~~~ 76 (106)
.|..|++++|++++|+|+++.. ......++.... . .+.|+++++||+|+..... ..++.+.+... .....
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~-~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-E---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH-H---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 4678899999999999998743 222222232222 2 3689999999999864321 12233332110 01223
Q ss_pred ceEEEEccccCCCChHHH
Q psy12794 77 TFQIFKTSAKEGEGLNDS 94 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~ 94 (106)
+++++++||++|.|+.++
T Consensus 156 ~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 156 DFPVLYASAKNGWASLNL 173 (194)
T ss_pred ccCEEEeehhcccccccc
Confidence 578999999999887433
No 184
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.24 E-value=1.4e-10 Score=76.71 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
.+++++|++++|+|.+++.++++. ++... .. .++|+++|+||+|+... ...+.. +..+.+++.+|
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~-~~---~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vS 342 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDL-NK---SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLS 342 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHH-hh---CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEE
Confidence 578999999999999988776654 34333 22 36899999999998643 111111 12234688999
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q psy12794 85 AKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~~ 104 (106)
|++ .|++++++.+.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 6999999988887654
No 185
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.24 E-value=6.6e-11 Score=68.03 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=60.4
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
..++.++|++++|+|++++.+ ....++.+.+.. .+.|+++++||+|+... ....+..+.+.. .....++++
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~ 148 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFP 148 (168)
T ss_pred HHHHHhCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEE
Confidence 446889999999999987622 222223333333 35899999999998632 222233333321 122458899
Q ss_pred ccccCCCChHHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~ 101 (106)
+|++++.|+++++++|.+.
T Consensus 149 ~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 149 ISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEeccCCChHHHHHHHHhh
Confidence 9999999999999998765
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.20 E-value=7.6e-11 Score=80.40 Aligned_cols=89 Identities=25% Similarity=0.273 Sum_probs=58.0
Q ss_pred hhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++.|+. ++|++++|+|.++.+.. ..+..+.. + .++|+++++||+|+.++.....-.+.+. +..+.++
T Consensus 64 ~~~~l~~~~aDvvI~VvDat~ler~---l~l~~ql~-~---~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pv 132 (591)
T TIGR00437 64 ARDYLLNEKPDLVVNVVDASNLERN---LYLTLQLL-E---LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPV 132 (591)
T ss_pred HHHHHhhcCCCEEEEEecCCcchhh---HHHHHHHH-h---cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCE
Confidence 344543 78999999999874322 22222222 2 3689999999999854322111112221 1234689
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+++||++|+|++++++++.+..
T Consensus 133 v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
No 187
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=6.4e-11 Score=75.20 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=47.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-----------CCCCeEEEEeeCCCCCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-----------LRDAILVILANKQDMKN 57 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~D~~~ 57 (106)
++|+.||++++++|+|||++++.+++.+..|+..+..... ..+.|++||+||+|+..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 3788999999999999999999999999988877765321 12589999999999854
No 188
>PRK12288 GTPase RsgA; Reviewed
Probab=99.19 E-value=1.6e-10 Score=74.40 Aligned_cols=87 Identities=23% Similarity=0.285 Sum_probs=61.8
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
.|+|.+++|++++...++..+..|+... .. .++|.++|+||+|+.+........+.... ....+++++.+||++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~t 192 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSHT 192 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCCC
Confidence 5799999999998777888888776533 22 56899999999998643221112221110 022356899999999
Q ss_pred CCChHHHHHHHHH
Q psy12794 88 GEGLNDSMDWLSN 100 (106)
Q Consensus 88 ~~~v~~~~~~l~~ 100 (106)
+.|++++++.+..
T Consensus 193 g~GideL~~~L~~ 205 (347)
T PRK12288 193 GEGLEELEAALTG 205 (347)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998865
No 189
>KOG1489|consensus
Probab=99.18 E-value=1.8e-10 Score=72.40 Aligned_cols=88 Identities=24% Similarity=0.314 Sum_probs=62.2
Q ss_pred hhccCCeEEEEEECCCc---chHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCcCCH--HHHHHHhCCCCcCCCceE
Q psy12794 6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLK-EEELRDAILVILANKQDMKNCMSV--AEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~ 79 (106)
+++.|+.++||+|++.+ +.++.+...+.++-. +..+.++|.++|+||+|+++.... .++.+.+. +..
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~~ 343 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NPH 343 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CCc
Confidence 46789999999999988 666666654443322 334568999999999998643221 33343333 226
Q ss_pred EEEccccCCCChHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~ 100 (106)
++++||+.++|++++..-|..
T Consensus 344 V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 344 VVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEEeeeccccchHHHHHHHhh
Confidence 999999999999998876654
No 190
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.18 E-value=2.3e-10 Score=67.91 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHh-CCCCcCC-CceEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRAL-GLENLKD-RTFQI 80 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~-~~~~~~~-~~~~~ 80 (106)
..+.+|++++|+|+.+........ ....... .+.|++++.||+|+..... ..++.+.+ ....... ...++
T Consensus 90 ~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 164 (188)
T PF00009_consen 90 GLRQADIAILVVDANDGIQPQTEE--HLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPV 164 (188)
T ss_dssp HHTTSSEEEEEEETTTBSTHHHHH--HHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEE
T ss_pred eecccccceeeeeccccccccccc--ccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceE
Confidence 367899999999998764433222 2222332 4688999999999863211 12222122 1111122 35899
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+.+||.+|.|++++++.+.+.++
T Consensus 165 i~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 165 IPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEEecCCCCCHHHHHHHHHHhCc
Confidence 99999999999999999998765
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.18 E-value=3.4e-10 Score=78.82 Aligned_cols=88 Identities=24% Similarity=0.297 Sum_probs=59.5
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
..+++.+|++++|+|.++.... .+..+.+.+.. .++|+++|+||+|+.... ....+.+... .+ ..+++
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg----~~-~~~~i 416 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTS--TDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKLG----LG-EPYPI 416 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCH--HHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHcC----CC-CeEEE
Confidence 3468899999999999764332 22234444443 579999999999975432 1222222211 11 34689
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++|.|++++++++.+.+.
T Consensus 417 SA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ECCCCCCchHHHHHHHHhcc
Confidence 99999999999999998764
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.18 E-value=4.6e-10 Score=76.75 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=64.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~ 78 (106)
.|..+++.+|++++|+|+++.........+. ... . .+.|+++++||+|+...... .++.+.++. ...
T Consensus 90 ~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~-~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~ 159 (600)
T PRK05433 90 EVSRSLAACEGALLVVDASQGVEAQTLANVY-LAL-E---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-----DAS 159 (600)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHH-H---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-----Ccc
Confidence 4778899999999999998765554433322 222 1 36799999999998643211 233333321 123
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.++.+||++|.|++++++++.+.+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 5899999999999999999988765
No 193
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.17 E-value=5e-10 Score=73.89 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=60.9
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIFK 82 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (106)
..+++++|++++|+|.+++.+..+. .+.+++.. .++|+++|+||+|+.+.... ..+... .++ ++++
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~--~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~------lg~~~~~~ 139 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDE--EIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYS------LGFGEPIP 139 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHh------cCCCCeEE
Confidence 4568899999999999875444332 23344443 46899999999997643221 122221 122 6899
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++++.+.+.
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcC
Confidence 999999999999999988764
No 194
>COG2262 HflX GTPases [General function prediction only]
Probab=99.15 E-value=6.3e-10 Score=71.93 Aligned_cols=88 Identities=24% Similarity=0.262 Sum_probs=63.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
..++|.+++|+|+++|..-..+ .-..+.+...+..++|+++|.||+|+..... ....+.. . .+ ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---~-~~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER---G-SP-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh---c-CC-CeEEEEec
Confidence 3579999999999998543333 3456677776667899999999999654322 1122211 1 11 58899999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy12794 87 EGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~~~ 103 (106)
+|.|++.+++.+.+.+.
T Consensus 340 ~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 340 TGEGLDLLRERIIELLS 356 (411)
T ss_pred cCcCHHHHHHHHHHHhh
Confidence 99999999999988775
No 195
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.13 E-value=6.8e-10 Score=77.14 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=63.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--C--CCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--K--DRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~ 77 (106)
+|..++..+|++++|+|+++........ .+. .+.. .+.|+++++||+|+... ...++.+.+..... . ...
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E-~I~-~~k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIE-AIN-YIQA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHH-HHH-HHHh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCC
Confidence 5677899999999999998743322211 122 2222 46899999999998643 33334333321110 1 123
Q ss_pred eEEEEccccCCCChHHHHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++++||++|.|++++++++....
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhhh
Confidence 6899999999999999999987643
No 196
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.12 E-value=7.3e-10 Score=71.30 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=75.4
Q ss_pred CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------ 58 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 58 (106)
+.|.+|+.++++++||+|.++ ...+.+....+..+.++....+.|+++++||.|+-..
T Consensus 199 ~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp 278 (342)
T smart00275 199 KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFP 278 (342)
T ss_pred hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCC
Confidence 469999999999999999986 3467777788888888877788999999999996210
Q ss_pred -----CCHHHHHHHhC----CCCc--CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 59 -----MSVAEVHRALG----LENL--KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 59 -----~~~~~~~~~~~----~~~~--~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.....+.+.+. .... ....+..+.++|.+..++..+|+.+.+.+.+
T Consensus 279 ~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 279 DYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 11222222221 1111 1245677889999999999999888776653
No 197
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.12 E-value=5.5e-10 Score=64.42 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=53.2
Q ss_pred CeEEEEEECCCcchHHHHHHHHH-HHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCC
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELL-AMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGE 89 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 89 (106)
|.+++|+|+.++.+.... ++. ..+.. .++|+++|+||+|+.+.....+....+. ......++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 689999999876544322 232 22222 4689999999999854321112221222 1123568899999999
Q ss_pred ChHHHHHHHHHH
Q psy12794 90 GLNDSMDWLSNA 101 (106)
Q Consensus 90 ~v~~~~~~l~~~ 101 (106)
|++++.+.+...
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988654
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.12 E-value=8.6e-10 Score=72.94 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=57.9
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIFK 82 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (106)
..+++++|++++|+|.+++.+..+. ++..++.. .++|+++++||+|..+. .....+.... ++ .+++
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~--~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l------g~~~~~~ 141 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADE--EIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL------GLGEPYP 141 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc------CCCCCEE
Confidence 4568899999999999875444322 23334433 36899999999996542 1222232221 22 4789
Q ss_pred ccccCCCChHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~ 100 (106)
+||++|.|++++++.+..
T Consensus 142 iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 142 ISAEHGRGIGDLLDAILE 159 (435)
T ss_pred EEeeCCCCHHHHHHHHHh
Confidence 999999999999999886
No 199
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.10 E-value=8.9e-10 Score=75.16 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=60.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--C--CCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--K--DRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~ 77 (106)
+|..++..+|++++|+|+++........ .+. .... .+.|+++++||+|+++. ...++.+.+..... . ...
T Consensus 151 ~r~rga~~aDiaILVVda~dgv~~qT~e-~i~-~~~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~ 224 (587)
T TIGR00487 151 MRARGAKVTDIVVLVVAADDGVMPQTIE-AIS-HAKA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGD 224 (587)
T ss_pred HHHhhhccCCEEEEEEECCCCCCHhHHH-HHH-HHHH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCC
Confidence 5667888999999999998643222221 121 2222 46899999999998643 33334333321110 0 113
Q ss_pred eEEEEccccCCCChHHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
.+++++||++|.|++++++++..
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhh
Confidence 57999999999999999999864
No 200
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.08 E-value=8.3e-10 Score=65.58 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=59.1
Q ss_pred hhhccC---CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcCCCc
Q psy12794 5 CYYSNT---DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLKDRT 77 (106)
Q Consensus 5 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~ 77 (106)
.|++.+ +++++++|.+.+.+..+. .+.+.+.. .+.|+++++||+|+.+...... +.+.+. ...
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~-----~~~ 168 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALK-----FGD 168 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH-----hcC
Confidence 445544 678889998765444332 23333332 4689999999999864322222 222222 124
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+++++||+++.|++++++.+.+.+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 578999999999999999999988764
No 201
>COG1159 Era GTPase [General function prediction only]
Probab=99.07 E-value=1.2e-09 Score=68.15 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=65.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEEEc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
..+.++|+++||+|++.+... -++++.+.++. .+.|++++.||+|...... ..+..+.+... .....++++
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpi 152 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPI 152 (298)
T ss_pred HHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEe
Confidence 457899999999999875333 33345555554 4689999999999765443 23444444321 123389999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++|.|++.+.+.+...+.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred eccccCCHHHHHHHHHHhCC
Confidence 99999999999999988775
No 202
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.07 E-value=1.3e-09 Score=69.50 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=75.8
Q ss_pred CchhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMKN------------- 57 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------- 57 (106)
+.|.+|+.++++++||+|.++- ..+.+....+..+..+....++|+++++||.|+-.
T Consensus 176 ~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp 255 (317)
T cd00066 176 KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFP 255 (317)
T ss_pred hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCC
Confidence 3699999999999999999863 46777777888888887778899999999999521
Q ss_pred -----cCCHHHHHHHhCCC----C-cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 58 -----CMSVAEVHRALGLE----N-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 58 -----~~~~~~~~~~~~~~----~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
......+.+.+... . .....+..+.++|.+..++..+|..+.+.+.+
T Consensus 256 ~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 256 DYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 11122222222211 0 01345777889999999999999988887754
No 203
>KOG4423|consensus
Probab=99.07 E-value=3.1e-10 Score=66.46 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=71.7
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC---CCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL---RDAILVILANKQDMKNCMS---VAEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~ 76 (106)
-+.||+.+++.++|||+++..+|+....|..++-....+ ...|+++..||+|...... ..++.+.-. +..
T Consensus 92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----eng 167 (229)
T KOG4423|consen 92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENG 167 (229)
T ss_pred EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccC
Confidence 356899999999999999999999888888776543322 3589999999999753211 123333322 222
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.-.++++|+++..++.+..+.|++++.
T Consensus 168 f~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 168 FEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred ccceeeeccccccChhHHHHHHHHHHH
Confidence 346899999999999999999987663
No 204
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.06 E-value=6.2e-10 Score=64.21 Aligned_cols=76 Identities=26% Similarity=0.389 Sum_probs=54.3
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
.+.|++++|+|+++. +.......++.. .++|++++.||+|.... ...+.+.+.++ ++++.+
T Consensus 77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~ 141 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPV 141 (156)
T ss_dssp TSSSEEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEE
T ss_pred cCCCEEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEE
Confidence 589999999998763 322222333332 46999999999996432 34556666664 589999
Q ss_pred cccCCCChHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWL 98 (106)
Q Consensus 84 sa~~~~~v~~~~~~l 98 (106)
||.+++|++++++.+
T Consensus 142 sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 142 SARTGEGIDELKDAI 156 (156)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred EeCCCcCHHHHHhhC
Confidence 999999999998764
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.06 E-value=1.3e-09 Score=74.40 Aligned_cols=96 Identities=23% Similarity=0.227 Sum_probs=59.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH-
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR- 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~- 66 (106)
+|..+++.+|++++|+|+++........ ....+.. .+.|+++++||+|+.... ....+.+
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~ 159 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQE--ALNILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN 159 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence 4677889999999999998632222211 1122222 468999999999985311 0001110
Q ss_pred ----------HhCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 67 ----------ALGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 67 ----------~~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
.+....+ .....+++.+||++|+|++++.+++....
T Consensus 160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 1111111 11246899999999999999999886543
No 206
>PRK13768 GTPase; Provisional
Probab=99.06 E-value=8.2e-10 Score=68.44 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=57.8
Q ss_pred CCeEEEEEECCCcchHHHHHH-HHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC-----C-----------
Q psy12794 10 TDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE-----N----------- 72 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~----------- 72 (106)
++++++|+|.+...+..+... ++....... ..++|+++|+||+|+.+.....+..+.+... .
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 207 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLL 207 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHH
Confidence 889999999975544433221 111111100 1468999999999986543333333322210 0
Q ss_pred -------cC--CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 73 -------LK--DRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 73 -------~~--~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+ ....+++.+|+++++|++++.+++.+.+.
T Consensus 208 ~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 208 SLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 00 12247899999999999999999988764
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.06 E-value=1.7e-09 Score=71.05 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=58.3
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~ 80 (106)
.....+|++++|+|++++.......+.+. .+.. ...+|+++++||+|+.+.... .++.+.+... ....+++
T Consensus 99 ~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~i 173 (406)
T TIGR03680 99 SGAALMDGALLVIAANEPCPQPQTKEHLM-ALEI--IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGT--VAENAPI 173 (406)
T ss_pred HHHHHCCEEEEEEECCCCccccchHHHHH-HHHH--cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhc--ccCCCeE
Confidence 44567899999999986431111122222 2222 123679999999998643211 2222222211 1125689
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++||++|.|+++++++|...+.
T Consensus 174 i~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 174 IPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred EEEECCCCCChHHHHHHHHHhCC
Confidence 99999999999999999987653
No 208
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.05 E-value=9.9e-10 Score=74.95 Aligned_cols=93 Identities=27% Similarity=0.253 Sum_probs=58.9
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~ 79 (106)
.++.++|++++|+|+++...... .+.+ ..+.. .+.| +++++||+|+.+.... .++.+.+.... ...+.+
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT-~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ 142 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQT-GEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAK 142 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCc
Confidence 45678999999999987422211 1112 22222 3466 9999999998653221 12222222110 112568
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++++.+.+.+.
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHH
Confidence 999999999999999998877654
No 209
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.05 E-value=2e-09 Score=75.34 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=60.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--C--CCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--K--DRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~ 77 (106)
+|..++..+|++++|+|+++........ .+ ..... .+.|+++++||+|+... ....+.+.+..... . ...
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e-~i-~~a~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~ 426 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIE-AI-NHAKA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGD 426 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHH-HH-HHHHh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCC
Confidence 5667788999999999998743222111 12 22222 46899999999998643 23333332211100 1 123
Q ss_pred eEEEEccccCCCChHHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
++++++||++|.|++++++++..
T Consensus 427 vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 427 TIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred ceEEEEeCCCCCCchHHHHhhhh
Confidence 68999999999999999999874
No 210
>KOG0096|consensus
Probab=99.03 E-value=2.4e-10 Score=67.00 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=73.4
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
+.||-+....|++||+++.-++..+.+|..++.... .+.|+++.+||.|............ .....++.++++
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~-----~~rkknl~y~~i 149 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVS-----FHRKKNLQYYEI 149 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccccce-----eeecccceeEEe
Confidence 357888889999999999999999999998887763 3589999999999764331111111 114567899999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++..|.+.-|-|+++.+.
T Consensus 150 Saksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred ecccccccccchHHHhhhhc
Confidence 99999999999999998775
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.03 E-value=4e-09 Score=69.11 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=65.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
.+..++.+++|+|.+.+-+-.+ ..+..+..+ .++++++|.||+|+.+. ...++..+.+......-...+++.+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQD--LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHH--HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 3668999999999987644433 335555555 57999999999998654 3344444444332223345689999
Q ss_pred cccCCCChHHHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~ 102 (106)
||++|.|++++++.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999887644
No 212
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.03 E-value=1.9e-09 Score=63.12 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=56.7
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
..++++|.+++|+|++.+....+. .+...+ .++|.++++||+|+.+.....+..+.+. .....++.+|
T Consensus 15 ~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi~iS 82 (171)
T cd01856 15 EKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVLFVN 82 (171)
T ss_pred HHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEEEEE
Confidence 457899999999999765432211 122222 3579999999999853321112222222 1123678999
Q ss_pred ccCCCChHHHHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~ 102 (106)
|+++.|++++.+.+...+
T Consensus 83 a~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 999999999999988764
No 213
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=9.8e-10 Score=62.47 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=49.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
.++++|++++|+|++++.+..+ ..+.+++.... .++|+++++||+|+.+.....+..+.+. ..+..++.+||
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~iSa 79 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFFSA 79 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEEEe
Confidence 4789999999999987654332 12334443321 4689999999999854322222333332 22357889999
Q ss_pred cCCCC
Q psy12794 86 KEGEG 90 (106)
Q Consensus 86 ~~~~~ 90 (106)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 214
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.01 E-value=3.5e-09 Score=64.61 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=55.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCc-----------
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENL----------- 73 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~----------- 73 (106)
.+|++++|+|++.+....+ ..+..++.. .+.|++++.||+|+.+.... .++.+.+.....
T Consensus 109 ~~D~~llVvda~~g~~~~d--~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~ 183 (224)
T cd04165 109 APDYAMLVVAANAGIIGMT--KEHLGLALA---LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDD 183 (224)
T ss_pred CCCEEEEEEECCCCCcHHH--HHHHHHHHH---cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeeccc
Confidence 5899999999876543222 223333333 46899999999997543222 223333331100
Q ss_pred ----------CCCceEEEEccccCCCChHHHHHHHHH
Q psy12794 74 ----------KDRTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 74 ----------~~~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
.....+++.+||.+|+|++++...|..
T Consensus 184 ~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 184 DVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 112358999999999999999887753
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.99 E-value=3.9e-09 Score=69.52 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=55.4
Q ss_pred cCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEc
Q psy12794 9 NTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
++|++++|+|++++. .... ...+. .+.. ...+|+++++||+|+.+.... .++.+.+... .....+++++
T Consensus 108 ~~D~~llVVDa~~~~~~~~t-~~~l~-~l~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~ii~v 181 (411)
T PRK04000 108 LMDGAILVIAANEPCPQPQT-KEHLM-ALDI--IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGT--VAENAPIIPV 181 (411)
T ss_pred hCCEEEEEEECCCCCCChhH-HHHHH-HHHH--cCCCcEEEEEEeeccccchhHHHHHHHHHHHhccc--cCCCCeEEEE
Confidence 469999999998643 1111 11121 2222 123578999999998653221 2233332211 1124689999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++|.|++++++.|...+.
T Consensus 182 SA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 182 SALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ECCCCcCHHHHHHHHHHhCC
Confidence 99999999999999988654
No 216
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.99 E-value=5.6e-09 Score=68.44 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=60.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
.+..||+++||+|....-+..+ ..+.+++.. .++|+++|.||+|... .....-+.+.+. .-+.+.+||
T Consensus 80 Ai~eADvilfvVD~~~Git~~D--~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG-----~g~~~~ISA 147 (444)
T COG1160 80 AIEEADVILFVVDGREGITPAD--EEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLG-----FGEPVPISA 147 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcC-----CCCceEeeh
Confidence 4678999999999976544433 235555553 5799999999999642 223344444321 226889999
Q ss_pred cCCCChHHHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~ 102 (106)
..|.|+.++.+.+...+
T Consensus 148 ~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 148 EHGRGIGDLLDAVLELL 164 (444)
T ss_pred hhccCHHHHHHHHHhhc
Confidence 99999999999999876
No 217
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.98 E-value=4.2e-09 Score=66.04 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
..++++|.+++|+|+..+.+.... .+.+.+ .++|+++|.||+|+.+........+.+.. .+.+++.+|
T Consensus 17 ~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi~iS 84 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKALAIN 84 (276)
T ss_pred HHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEEEEE
Confidence 357789999999999766443221 233433 25799999999998532212222223321 234688999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q psy12794 85 AKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~ 103 (106)
|+++.|++++.+.+.+.+.
T Consensus 85 a~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999988877654
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.97 E-value=2.3e-09 Score=65.09 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=49.0
Q ss_pred hhccCCeEEEEEECCCcch---HH---HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHH----HhCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDR---IG---ISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHR----ALGLE 71 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~----~~~~~ 71 (106)
..+.+|++++|+|+++... +. .....+ ..... ...+|+++++||+|+... .....+.+ .+...
T Consensus 97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~ 173 (219)
T cd01883 97 GASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART--LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKV 173 (219)
T ss_pred HhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH--cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHc
Confidence 4567999999999987411 01 111111 12222 133789999999998631 11122222 22222
Q ss_pred CcCCCceEEEEccccCCCChH
Q psy12794 72 NLKDRTFQIFKTSAKEGEGLN 92 (106)
Q Consensus 72 ~~~~~~~~~~~~sa~~~~~v~ 92 (106)
......++++.+||++|.|++
T Consensus 174 ~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 174 GYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCCcCCceEEEeecCcCCCCC
Confidence 122335789999999999986
No 219
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.94 E-value=1.9e-09 Score=69.84 Aligned_cols=91 Identities=22% Similarity=0.323 Sum_probs=57.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCce---
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTF--- 78 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~--- 78 (106)
...+++.++++++|+|+.+.... ....+.+.. .++|+++|+||+|+... .....+.+++... .+..++
T Consensus 57 l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k~~g~~~~ 128 (360)
T TIGR03597 57 LNSLGDSNALIVYVVDIFDFEGS--LIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AKELGLKPV 128 (360)
T ss_pred HhhcccCCcEEEEEEECcCCCCC--ccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HHHcCCCcC
Confidence 34567889999999999765321 111233332 35799999999998543 2333333322100 011122
Q ss_pred EEEEccccCCCChHHHHHHHHHH
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
.++.+||++|.|++++++.+.+.
T Consensus 129 ~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 129 DIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cEEEecCCCCCCHHHHHHHHHHH
Confidence 58899999999999999998754
No 220
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.94 E-value=5.9e-09 Score=73.12 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=56.4
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
..+|++++|+|.++..+- ..+..+. .+ .++|+++++||+|+.+........+.+. +..+++++.+||.+
T Consensus 84 ~~aD~vI~VvDat~ler~---l~l~~ql-~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~~ 152 (772)
T PRK09554 84 GDADLLINVVDASNLERN---LYLTLQL-LE---LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVSTR 152 (772)
T ss_pred cCCCEEEEEecCCcchhh---HHHHHHH-HH---cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEeec
Confidence 389999999999875432 2223332 22 4689999999999864322221122222 22346899999999
Q ss_pred CCChHHHHHHHHHHH
Q psy12794 88 GEGLNDSMDWLSNAL 102 (106)
Q Consensus 88 ~~~v~~~~~~l~~~~ 102 (106)
|+|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999887654
No 221
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.93 E-value=1.9e-09 Score=63.51 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=49.3
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
.++++++|+|.+++-+..+.. +...+.. .++|+++++||+|+..... ..++.+.++. .....+++++|
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~--~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~---~~~~~~v~~~S 171 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLE--MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK---DADDPSVQLFS 171 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh---ccCCCceEEEE
Confidence 357999999998754444432 2333333 4689999999999864321 2334444432 11235899999
Q ss_pred ccCCCChH
Q psy12794 85 AKEGEGLN 92 (106)
Q Consensus 85 a~~~~~v~ 92 (106)
|++|+|++
T Consensus 172 a~~g~gi~ 179 (179)
T TIGR03598 172 SLKKTGID 179 (179)
T ss_pred CCCCCCCC
Confidence 99999974
No 222
>PRK09866 hypothetical protein; Provisional
Probab=98.93 E-value=1.3e-08 Score=69.73 Aligned_cols=92 Identities=21% Similarity=0.149 Sum_probs=59.7
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCC--CcCCCceEEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLE--NLKDRTFQIF 81 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~--~~~~~~~~~~ 81 (106)
.+.++|+++||+|.+...+..+. .+.+.++... .+.|+++|.||+|..+.. ..+.+.+.+... ......-.++
T Consensus 255 qL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~-K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIf 331 (741)
T PRK09866 255 QLARASAVLAVLDYTQLKSISDE--EVREAILAVG-QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIF 331 (741)
T ss_pred HHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcC-CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEE
Confidence 57889999999999875444432 2444444311 125999999999975322 133444432211 0011234799
Q ss_pred EccccCCCChHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~ 100 (106)
.+||+.|.|++++++.+..
T Consensus 332 PVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 332 PVSSMWGYLANRARHELAN 350 (741)
T ss_pred EEeCCCCCCHHHHHHHHHh
Confidence 9999999999999998876
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.93 E-value=4.9e-09 Score=59.52 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=54.6
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
.+||.+++|.|++++.+.-. -.+... .++|++=|.||+|+. +....+...+.+..... -++|.+|+.
T Consensus 62 ~dad~V~ll~dat~~~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~----~~if~vS~~ 129 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFP-----PGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGV----KEIFEVSAV 129 (143)
T ss_pred hhCCEEEEEecCCCCCccCC-----chhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCC----CCeEEEECC
Confidence 48999999999997643210 011111 468999999999997 23344444444442211 146999999
Q ss_pred CCCChHHHHHHHH
Q psy12794 87 EGEGLNDSMDWLS 99 (106)
Q Consensus 87 ~~~~v~~~~~~l~ 99 (106)
+|+|++++.++|.
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999999874
No 224
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.93 E-value=6.8e-09 Score=65.98 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=60.2
Q ss_pred hhccCCeEEEEEECCCcc---hHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 6 YYSNTDAIIYVVDSSDRD---RIGISKEELLAMLK-EEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+++.|.++++|+|++..+ ..++......++-+ ...+.++|.++|+||+|+... ...+...+.+. +...+..
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~ 309 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEV 309 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCc
Confidence 467899999999998543 23333332223222 334568999999999996543 22333333333 1112222
Q ss_pred EE-ccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FK-TSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~-~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+. +||.+++|++++...+.+.+.+
T Consensus 310 ~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 310 FYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred ceeeehhcccCHHHHHHHHHHHHHH
Confidence 22 9999999999999988887754
No 225
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.92 E-value=3.4e-09 Score=70.06 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=50.8
Q ss_pred hccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------HHHHHHHhCCCCcCCCceE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCMS------VAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~ 79 (106)
+.++|++++|+|++++.+..... .+...+... ....|+++++||+|+.+... ..++.+.+.........++
T Consensus 106 ~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~ 183 (426)
T TIGR00483 106 ASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVP 183 (426)
T ss_pred hhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccce
Confidence 57899999999998764321111 011112222 12368999999999863211 1233333322212223578
Q ss_pred EEEccccCCCChHHH
Q psy12794 80 IFKTSAKEGEGLNDS 94 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~ 94 (106)
++++||++|.|+.+.
T Consensus 184 ~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 184 FIPISAWNGDNVIKK 198 (426)
T ss_pred EEEeecccccccccc
Confidence 999999999999863
No 226
>KOG0462|consensus
Probab=98.91 E-value=1.7e-08 Score=67.63 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceEEEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
-+.-|+|+++|+|++...-......++.-+ + .+..+|.|.||+|++.+.. ..++.+.+.. ..-+++.
T Consensus 145 slaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-----~~~~~i~ 214 (650)
T KOG0462|consen 145 SLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFELFDI-----PPAEVIY 214 (650)
T ss_pred hhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-----CccceEE
Confidence 456799999999998765554444433332 2 4678999999999986532 2344444542 2348999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++.+++.++
T Consensus 215 vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 215 VSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEeccCccHHHHHHHHHhhCC
Confidence 999999999999999998875
No 227
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.90 E-value=9.5e-09 Score=59.14 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=53.9
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcCCCceEEEEcc
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s 84 (106)
+++++++++|.+...+.... .+.+.+.. .+.|+++++||+|+........ ....+.. .....+++++|
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~S 152 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKL---FEIDPPIILFS 152 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh---ccCCCceEEEe
Confidence 45788999998765322221 12233333 3579999999999853322211 2222210 12345788999
Q ss_pred ccCCCChHHHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~ 101 (106)
|+++.|+.+++++|.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999999875
No 228
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.88 E-value=4.2e-09 Score=57.89 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=37.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHH---HHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEE---LLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
|..++.++|++++|||++++.++..+.++ +...... ..+.|+++|+||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 45568899999999999999999887544 3333221 14599999999998
No 229
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.88 E-value=1.2e-08 Score=70.18 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=57.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQI 80 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~ 80 (106)
.+.++|++++|+|++....... . .....+.. .+.| +++|+||+|+.+..... ++.+.+... .....++
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT-~-ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~--~~~~~~i 143 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQT-R-EHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY--GFAEAKL 143 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHH-H-HHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc--CCCCCcE
Confidence 3678999999999986432221 1 12223332 2344 68999999986432222 233333211 1123689
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+.+||++|.|++++++.|.+...
T Consensus 144 i~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 144 FVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEEeCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999987543
No 230
>KOG0090|consensus
Probab=98.86 E-value=3.9e-08 Score=58.95 Aligned_cols=92 Identities=25% Similarity=0.421 Sum_probs=62.0
Q ss_pred cCCeEEEEEECCC-cchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCcCCHHHHHHHhC----------------
Q psy12794 9 NTDAIIYVVDSSD-RDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNCMSVAEVHRALG---------------- 69 (106)
Q Consensus 9 ~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~---------------- 69 (106)
++.++|||+|... .....+..++++..+.... ...+|+++++||.|+..+...+.+.+.+.
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~ 187 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSI 187 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 7899999999863 3456666677777776542 35689999999999854433222211110
Q ss_pred -------------------CCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 70 -------------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 70 -------------------~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
...+....+.|.++|++++ +++++.+|+.+.
T Consensus 188 ~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 188 SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0011123467999999998 999999998765
No 231
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=2.9e-08 Score=65.70 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=63.9
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhCCCCcCCCceEEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+.+.-|.|+++|+|+++.-.-..+.+.+.- +. .+..++-|.||+|++.+. ...++.+.++.. .-..+
T Consensus 95 RSLAACEGalLvVDAsQGveAQTlAN~YlA-le----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid-----~~dav 164 (603)
T COG0481 95 RSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGID-----ASDAV 164 (603)
T ss_pred hhHhhCCCcEEEEECccchHHHHHHHHHHH-HH----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCC-----cchhe
Confidence 346679999999999876443333332222 22 468899999999998653 234566666643 23678
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+||++|.|++++++.+++.+.
T Consensus 165 ~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 165 LVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred eEecccCCCHHHHHHHHHhhCC
Confidence 9999999999999999998875
No 232
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.86 E-value=1.7e-08 Score=63.62 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=57.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
..++.+|++++|+|+..+.+... ..+.+... ++|.++|.||+|+.+........+.+. ..+.+++.+|
T Consensus 20 ~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~vS 87 (287)
T PRK09563 20 ENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALAIN 87 (287)
T ss_pred HHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 34678999999999976644322 12333332 589999999999853211122222221 1134678999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q psy12794 85 AKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~ 103 (106)
|+++.|++++.+.+...+.
T Consensus 88 a~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 88 AKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999998877654
No 233
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.85 E-value=4.1e-08 Score=60.25 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=37.0
Q ss_pred CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
.|+++|+||+|+.+ ..+...... ...++++||+++.|++++++.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~---~~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLIS---IEELDLLAR-------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCC---HHHHHHHhc-------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 69999999999853 223332221 13588999999999999999998866
No 234
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=6.1e-08 Score=64.65 Aligned_cols=89 Identities=24% Similarity=0.231 Sum_probs=59.3
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC----CCceEEEEc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK----DRTFQIFKT 83 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 83 (106)
.=+|.+|+|+|.++.--++... -.+..+. .+.|++++.||+|.++. ....+...+....+. .....++.+
T Consensus 77 ~vtDIaILVVa~dDGv~pQTiE--AI~hak~---a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 77 SVTDIAILVVAADDGVMPQTIE--AINHAKA---AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ccccEEEEEEEccCCcchhHHH--HHHHHHH---CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 3479999999998753333222 1222333 68999999999998753 333443333322221 234689999
Q ss_pred cccCCCChHHHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~ 102 (106)
||++|+|+.++++.+....
T Consensus 151 SA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 151 SAKTGEGIDELLELILLLA 169 (509)
T ss_pred eccCCCCHHHHHHHHHHHH
Confidence 9999999999999877543
No 235
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.85 E-value=3e-08 Score=65.26 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=59.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
..++||.+++|+|.+.+.+-.+.. +.+ ....++|+++|.||+|+.+....... + . ..+.+++.+||
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa 358 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISA 358 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEe
Confidence 467899999999998863222221 222 11257999999999999765432222 1 1 12337899999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
++++|++.+.+.+.+.+.
T Consensus 359 ~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 359 KTGEGLDALREAIKQLFG 376 (454)
T ss_pred cCccCHHHHHHHHHHHHh
Confidence 999999999999887664
No 236
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.84 E-value=6.2e-08 Score=66.37 Aligned_cols=91 Identities=27% Similarity=0.279 Sum_probs=57.4
Q ss_pred chhhhhccCCeEEEEEECCC---cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHH-
Q psy12794 2 YWRCYYSNTDAIIYVVDSSD---RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAE- 63 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~- 63 (106)
+|..+++.+|++++|+|+++ +.++..+. .+.. .+.|+++++||+|+..... ...
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 35566788999999999986 33333322 2222 4689999999999742100 000
Q ss_pred ----------HHHHhCCCCcC----------CCceEEEEccccCCCChHHHHHHHHH
Q psy12794 64 ----------VHRALGLENLK----------DRTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 64 ----------~~~~~~~~~~~----------~~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
+...+....+. ....+++++||.+|+|++++.+.+..
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 11111111110 13468999999999999999888764
No 237
>PRK10218 GTP-binding protein; Provisional
Probab=98.83 E-value=2.7e-08 Score=68.23 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=63.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCc--CCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENL--KDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~ 76 (106)
.|..+++.+|++++|+|+++...... ...+..... .+.|.+++.||+|+..... ..++.+.+..... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 46788999999999999987533322 222322222 4678899999999865322 2344444321111 123
Q ss_pred ceEEEEccccCCC----------ChHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGE----------GLNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~----------~v~~~~~~l~~~~~ 103 (106)
.++++.+||.+|. |+..+++.+.+.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 4789999999998 57888888877664
No 238
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.82 E-value=3.4e-08 Score=67.71 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=63.9
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCc--CCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENL--KDRT 77 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~ 77 (106)
+..+++.+|++++|+|+++.. ......++..... .+.|+++++||+|+..... ..++.+.+..... ....
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 566889999999999998643 2233334444332 4679999999999864321 2233333321111 1234
Q ss_pred eEEEEccccCCC----------ChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGE----------GLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~----------~v~~~~~~l~~~~~ 103 (106)
++++.+||++|. |+..+++.+.+.+.
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 689999999995 79999999988765
No 239
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.81 E-value=2.3e-08 Score=66.18 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=50.4
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------HHHHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------VAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~ 80 (106)
+.++|++++|+|++++.+......+...+.... ..+|+++++||+|+.+... ..++.+.+..........++
T Consensus 105 ~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~i 182 (425)
T PRK12317 105 ASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPF 182 (425)
T ss_pred hhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceE
Confidence 467999999999986212211111122222221 2357999999999864211 12333333221112234689
Q ss_pred EEccccCCCChHHHH
Q psy12794 81 FKTSAKEGEGLNDSM 95 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~ 95 (106)
+.+||++|.|+++..
T Consensus 183 i~iSA~~g~gi~~~~ 197 (425)
T PRK12317 183 IPVSAFEGDNVVKKS 197 (425)
T ss_pred EEeecccCCCccccc
Confidence 999999999998743
No 240
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.77 E-value=7.1e-08 Score=57.38 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=61.1
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEcc
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
+..++++++|...+ ..+.+..+.+++.. .+.|+++++||+|....... ..+.+.+.... .....++..|
T Consensus 106 ~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~--~~~~~~~~~s 178 (200)
T COG0218 106 NLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP--PDDQWVVLFS 178 (200)
T ss_pred hheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC--CccceEEEEe
Confidence 46789999999554 44445556677666 67999999999997653222 34444444221 1111278889
Q ss_pred ccCCCChHHHHHHHHHHHhh
Q psy12794 85 AKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~~ 104 (106)
+.++.|++++...|.+.+..
T Consensus 179 s~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 179 SLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cccccCHHHHHHHHHHHhhc
Confidence 99999999999999887754
No 241
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.77 E-value=1.2e-07 Score=68.27 Aligned_cols=92 Identities=24% Similarity=0.236 Sum_probs=55.6
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------------------HHHHHH
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------------------VAEVHR 66 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------------------~~~~~~ 66 (106)
..+..+|++++|+|+++........ ....+.. .++|+++++||+|+..... ..++.+
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e--~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIE--AINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHH--HHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 3567799999999998632221111 1122222 3689999999999853211 011110
Q ss_pred H-------hCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 67 A-------LGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 67 ~-------~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
. +....+ .....+++++||++|+|++++.+++...
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0 111100 1235689999999999999999888644
No 242
>PRK01889 GTPase RsgA; Reviewed
Probab=98.76 E-value=1.2e-07 Score=61.47 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=55.4
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
..|+|.+++|+++..+.....++.++... .. .+.|.++|+||+|+.+. ..+..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 47899999999997444444444433322 22 46777899999999643 11122222111 235688999999
Q ss_pred CCCChHHHHHHHH
Q psy12794 87 EGEGLNDSMDWLS 99 (106)
Q Consensus 87 ~~~~v~~~~~~l~ 99 (106)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 243
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.76 E-value=1.4e-07 Score=58.08 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=63.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhCCC--------
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALGLE-------- 71 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~-------- 71 (106)
|..+++.+|++++|+|+++..... ...++ +.... .++|+++++||+|+.... ...++.+.++..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILW-RLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHH-HHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 567899999999999998764432 22223 33333 468999999999986421 122333333210
Q ss_pred ----------------------------------Cc--------------CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 72 ----------------------------------NL--------------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 72 ----------------------------------~~--------------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+ ...-+|++..||.++.|+..+++.+...++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 00 112368999999999999999999988764
No 244
>KOG1707|consensus
Probab=98.75 E-value=9.2e-09 Score=69.11 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=68.6
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCH--HH-HHHHhCCCCcCCCce
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSV--AE-VHRALGLENLKDRTF 78 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~ 78 (106)
++=++.+|++.++++++++.+++.+...|..+++.... .+.|+|+||||+|+...... +. +...+. ....+
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~----~f~Ei 149 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI----AFAEI 149 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH----HhHHH
Confidence 34578899999999999999999999888787776442 36899999999998654321 11 221111 11112
Q ss_pred -EEEEccccCCCChHHHHHHHHHHH
Q psy12794 79 -QIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 79 -~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
..++|||++..++.++|....+.+
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhhee
Confidence 478999999999999998766543
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.72 E-value=8.3e-08 Score=64.03 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=56.5
Q ss_pred hccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEE
Q psy12794 7 YSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (106)
...+|++++|+|++.+. ... ..+.+ ...... .-++++++.||+|+.+.... .++.+.+... .....+++
T Consensus 138 ~~~~D~alLVVda~~g~~~~q-T~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~--~~~~~~ii 211 (460)
T PTZ00327 138 AAVMDAALLLIAANESCPQPQ-TSEHL-AAVEIM--KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGT--IADNAPII 211 (460)
T ss_pred HhhCCEEEEEEECCCCccchh-hHHHH-HHHHHc--CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhh--ccCCCeEE
Confidence 34689999999998641 221 11112 222221 23578999999998642221 2233322211 12356899
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+||.+|.|++.+++.|.+.+.
T Consensus 212 pVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 212 PISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EeeCCCCCCHHHHHHHHHhhCC
Confidence 9999999999999999986553
No 246
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.68 E-value=2.6e-07 Score=55.77 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=47.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCC--CCcCCCceEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGL--ENLKDRTFQI 80 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~ 80 (106)
.+++.+|++++|+|++++..-... ....+.... ..+++++++||+|+..... ...+...+.. ..+.....++
T Consensus 96 ~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 171 (208)
T cd04166 96 TGASTADLAILLVDARKGVLEQTR--RHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITF 171 (208)
T ss_pred HhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceE
Confidence 457899999999999865322211 122222221 2246788999999864211 1112111110 0001123579
Q ss_pred EEccccCCCChHH
Q psy12794 81 FKTSAKEGEGLND 93 (106)
Q Consensus 81 ~~~sa~~~~~v~~ 93 (106)
+.+||++|.|+.+
T Consensus 172 i~iSA~~g~ni~~ 184 (208)
T cd04166 172 IPISALDGDNVVS 184 (208)
T ss_pred EEEeCCCCCCCcc
Confidence 9999999999875
No 247
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.65 E-value=5.1e-07 Score=54.08 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=48.0
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-H----HHHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-V----AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 80 (106)
+..+|++++|+|++...... ...+...+.. .++| ++++.||+|+..... . .++.+.+..........++
T Consensus 86 ~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 86 AAQMDGAILVVSATDGPMPQ--TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred hhhCCEEEEEEECCCCCcHH--HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 56799999999997643222 2122233333 3455 779999999853211 1 1233333222222235789
Q ss_pred EEccccCCCCh
Q psy12794 81 FKTSAKEGEGL 91 (106)
Q Consensus 81 ~~~sa~~~~~v 91 (106)
+.+||++|.|.
T Consensus 161 ipiSa~~g~n~ 171 (195)
T cd01884 161 VRGSALKALEG 171 (195)
T ss_pred EEeeCccccCC
Confidence 99999999985
No 248
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.64 E-value=2.3e-07 Score=55.71 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=53.2
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
+|.++.|+|+.+..+. ...... . ....=++++||+|+.+. .....+.+..... ....+++++||++
T Consensus 113 ~~~~i~vvD~~~~~~~---~~~~~~---q---i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~ 180 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKI---PRKGGP---G---ITRSDLLVINKIDLAPMVGADLGVMERDAKKM---RGEKPFIFTNLKT 180 (199)
T ss_pred hCcEEEEEEcchhhhh---hhhhHh---H---hhhccEEEEEhhhccccccccHHHHHHHHHHh---CCCCCEEEEECCC
Confidence 5779999998754332 111111 1 11233899999998742 2333444444321 2356899999999
Q ss_pred CCChHHHHHHHHHHHh
Q psy12794 88 GEGLNDSMDWLSNALQ 103 (106)
Q Consensus 88 ~~~v~~~~~~l~~~~~ 103 (106)
|+|++++++++.+...
T Consensus 181 g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 181 KEGLDTVIDWIEHYAL 196 (199)
T ss_pred CCCHHHHHHHHHhhcC
Confidence 9999999999998764
No 249
>KOG1145|consensus
Probab=98.61 E-value=1.3e-06 Score=59.05 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=57.7
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc----CCCceEEEEcc
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL----KDRTFQIFKTS 84 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s 84 (106)
-+|.+++|+..++.--..... -....+. .+.|++++.||+|.++. ..+.+.+.+..... -....+++++|
T Consensus 224 vtDIvVLVVAadDGVmpQT~E--aIkhAk~---A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLE--AIKHAKS---ANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred cccEEEEEEEccCCccHhHHH--HHHHHHh---cCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence 479999999987653222211 2223333 68999999999998754 34444333332221 12457899999
Q ss_pred ccCCCChHHHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~ 101 (106)
|++|+|++.+-+.+..+
T Consensus 298 Al~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLL 314 (683)
T ss_pred cccCCChHHHHHHHHHH
Confidence 99999999998877654
No 250
>PRK13796 GTPase YqeH; Provisional
Probab=98.61 E-value=1.2e-07 Score=61.75 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=53.0
Q ss_pred ccCC-eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc---eEEEE
Q psy12794 8 SNTD-AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT---FQIFK 82 (106)
Q Consensus 8 ~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~ 82 (106)
...+ .+++|+|+.+.... ....+.++. .++|+++|+||+|+... ....++.+..... .+..+ ..++.
T Consensus 67 ~~~~~lIv~VVD~~D~~~s--~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~-~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNGS--WIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQE-AKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCCCc--hhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHH-HHhcCCCcCcEEE
Confidence 3445 88999999764311 111233332 35799999999998542 2223333221100 01112 25889
Q ss_pred ccccCCCChHHHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~ 102 (106)
+||+++.|++++++.+.+..
T Consensus 139 vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999987653
No 251
>KOG1673|consensus
Probab=98.57 E-value=2.3e-07 Score=53.20 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=63.3
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCCceEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (106)
+-..+++-+++|+||.+++.+...+..|+... ...+....| +++|+|.|+--.... ..+......+ .+-.+.+.
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QA-r~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~Y-Ak~mnAsL 163 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQA-RGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKY-AKVMNASL 163 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHH-hccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHH-HHHhCCcE
Confidence 33567888999999999999999988766554 333334466 667999995322111 1122111110 02335588
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+.||+....|+.++|..+...+
T Consensus 164 ~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 164 FFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred EEeeccccccHHHHHHHHHHHH
Confidence 9999999999999998776544
No 252
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.54 E-value=2.1e-07 Score=54.94 Aligned_cols=57 Identities=33% Similarity=0.450 Sum_probs=38.7
Q ss_pred hhccCCeEEEEEECCC-cchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCcCCHH
Q psy12794 6 YYSNTDAIIYVVDSSD-RDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNCMSVA 62 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~ 62 (106)
|..++.++|||+|.+. +....+..++++.++.... ....|+++++||.|+..+....
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~ 131 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPK 131 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HH
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHH
Confidence 5778999999999974 4456777777777776443 2468999999999987654433
No 253
>PRK12736 elongation factor Tu; Reviewed
Probab=98.52 E-value=1.1e-06 Score=57.86 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=53.5
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCH-----HHHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSV-----AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 80 (106)
...+|++++|+|++....... .+.+ .+... .++| ++++.||+|+.+.... .++.+.+..........++
T Consensus 96 ~~~~d~~llVvd~~~g~~~~t-~~~~-~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 170 (394)
T PRK12736 96 AAQMDGAILVVAATDGPMPQT-REHI-LLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPV 170 (394)
T ss_pred HhhCCEEEEEEECCCCCchhH-HHHH-HHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccE
Confidence 356799999999976432221 1122 22322 3566 6789999998632211 1233333221112234689
Q ss_pred EEccccCCC--------ChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGE--------GLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~--------~v~~~~~~l~~~~ 102 (106)
+.+||++|. ++.++++.+.+.+
T Consensus 171 i~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 171 IRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred EEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 999999983 5677777776654
No 254
>KOG1423|consensus
Probab=98.51 E-value=9.7e-07 Score=55.88 Aligned_cols=94 Identities=21% Similarity=0.140 Sum_probs=59.4
Q ss_pred hhhccCCeEEEEEECCCcchHHHH--HHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---------------C--HHHHH
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGIS--KEELLAMLKEEELRDAILVILANKQDMKNCM---------------S--VAEVH 65 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---------------~--~~~~~ 65 (106)
+...++|.++.|+|++++.....- ...+..+ ...|.++|.||+|...+. . ..++.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 456789999999999864332211 1112233 468999999999964321 1 12333
Q ss_pred HHhCCCC-----cCCC----ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 66 RALGLEN-----LKDR----TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 66 ~~~~~~~-----~~~~----~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+.+.... .... .-.+|.+||++|.|++++.++|..++..
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 3333111 0011 1258999999999999999999987753
No 255
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.50 E-value=3.7e-07 Score=55.04 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=40.7
Q ss_pred CCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 43 DAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+.|.++++||+|+.+.. ...+..+.+.. .....+++.+||++|.|++++++++.++.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46889999999986532 22333333321 11346899999999999999999998754
No 256
>KOG0082|consensus
Probab=98.49 E-value=2.3e-06 Score=55.23 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=72.6
Q ss_pred chhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-------------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------- 58 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------- 58 (106)
-|.|.+.++++++||+++++- +.+.+....+....+++...+.++++..||.|+-+.
T Consensus 211 KWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpd 290 (354)
T KOG0082|consen 211 KWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPD 290 (354)
T ss_pred hHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcC
Confidence 499999999999999999732 245666667888888888889999999999997210
Q ss_pred ----CCHHHHHHHhCC----CC-cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 59 ----MSVAEVHRALGL----EN-LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 59 ----~~~~~~~~~~~~----~~-~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
....+....+.. .. -....+.++.+.|.+..+|..+|..+.+.+.+
T Consensus 291 y~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 291 YKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred CCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 112222222111 00 01145667788999999999999988877653
No 257
>PRK13351 elongation factor G; Reviewed
Probab=98.43 E-value=2.9e-06 Score=59.43 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=36.9
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
|..+++.+|++++|+|+++........ .+.. ... .++|+++++||+|+..
T Consensus 90 ~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~-~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 90 VERSLRVLDGAVVVFDAVTGVQPQTET-VWRQ-ADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HHh---cCCCEEEEEECCCCCC
Confidence 567899999999999998776554433 2222 222 4689999999999864
No 258
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.5e-06 Score=59.77 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=58.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
+.|+++.|+|+++-++--.. ..++++ .+.|++++.|++|..++ .+.++..+.+ +++++.+|
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tv 145 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTV 145 (653)
T ss_pred CCCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEE
Confidence 57999999999874332221 222222 47899999999997543 3555666665 46999999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q psy12794 85 AKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~ 103 (106)
|++|+|++++...+.+...
T Consensus 146 A~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 146 AKRGEGLEELKRAIIELAE 164 (653)
T ss_pred eecCCCHHHHHHHHHHhcc
Confidence 9999999999998876543
No 259
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.41 E-value=1.1e-06 Score=48.76 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=57.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
..++|.+++|-.++++.+.- -.-+.. ...+|+|-+.+|.|+.+........+++.. ...-++|.+|+.
T Consensus 62 ~~dadvi~~v~~and~~s~f------~p~f~~--~~~k~vIgvVTK~DLaed~dI~~~~~~L~e----aGa~~IF~~s~~ 129 (148)
T COG4917 62 LQDADVIIYVHAANDPESRF------PPGFLD--IGVKKVIGVVTKADLAEDADISLVKRWLRE----AGAEPIFETSAV 129 (148)
T ss_pred hhccceeeeeecccCccccC------Cccccc--ccccceEEEEecccccchHhHHHHHHHHHH----cCCcceEEEecc
Confidence 45788999999888775421 111111 245779999999999865444445555542 223489999999
Q ss_pred CCCChHHHHHHHHHH
Q psy12794 87 EGEGLNDSMDWLSNA 101 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~ 101 (106)
+..|++++++.|...
T Consensus 130 d~~gv~~l~~~L~~~ 144 (148)
T COG4917 130 DNQGVEELVDYLASL 144 (148)
T ss_pred CcccHHHHHHHHHhh
Confidence 999999999998764
No 260
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.40 E-value=1.3e-05 Score=50.29 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=33.6
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
..+++.+|++++|+|+++..... ... +.+.... .++|+++++||+|+...
T Consensus 89 ~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 89 YRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHHh---cCCCEEEEEECCccCCC
Confidence 34678999999999998653221 112 2233332 46899999999997543
No 261
>PRK12735 elongation factor Tu; Reviewed
Probab=98.36 E-value=5.3e-06 Score=54.70 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~ 80 (106)
..++|++++|+|+........ .+.+ ..... .++|.+ ++.||+|+.+... .. ++.+.+..........++
T Consensus 96 ~~~aD~~llVvda~~g~~~qt-~e~l-~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~i 170 (396)
T PRK12735 96 AAQMDGAILVVSAADGPMPQT-REHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI 170 (396)
T ss_pred hccCCEEEEEEECCCCCchhH-HHHH-HHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeE
Confidence 457899999999986432221 1222 22222 356755 6799999864211 11 233333221111224789
Q ss_pred EEccccCCC----------ChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGE----------GLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~----------~v~~~~~~l~~~~ 102 (106)
+.+||.+|. ++.++++.|.+.+
T Consensus 171 i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 171 IRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred EecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 999999984 5677777776654
No 262
>PRK12740 elongation factor G; Reviewed
Probab=98.35 E-value=9.2e-06 Score=56.79 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=35.7
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
|..+++.+|++++|+|++......... .+.. ... .+.|+++++||+|...
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~-~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTET-VWRQ-AEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHH-HHH---cCCCEEEEEECCCCCC
Confidence 556788999999999998765544332 2222 222 4689999999999764
No 263
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.32 E-value=5.3e-06 Score=55.47 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=49.2
Q ss_pred hhccCCeEEEEEECCCcchHH-------HHHHHHHHHhcCcCCCCC-eEEEEeeCCCCCCc-C---C----HHHHHHHhC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIG-------ISKEELLAMLKEEELRDA-ILVILANKQDMKNC-M---S----VAEVHRALG 69 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~-~---~----~~~~~~~~~ 69 (106)
.+..+|++++|+|+++. .++ ...+.+ .+... .+. ++++++||+|+... . . ..++.+.+.
T Consensus 105 g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~-~~~~~---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~ 179 (447)
T PLN00043 105 GTSQADCAVLIIDSTTG-GFEAGISKDGQTREHA-LLAFT---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLK 179 (447)
T ss_pred hhhhccEEEEEEEcccC-ceecccCCCchHHHHH-HHHHH---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHH
Confidence 46789999999999863 221 222222 22222 345 57889999997521 1 1 223333333
Q ss_pred CCCcCCCceEEEEccccCCCChHH
Q psy12794 70 LENLKDRTFQIFKTSAKEGEGLND 93 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~~v~~ 93 (106)
........++++++||.+|.|+.+
T Consensus 180 ~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 180 KVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HcCCCcccceEEEEeccccccccc
Confidence 222222357899999999999853
No 264
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.32 E-value=2.1e-05 Score=53.65 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=33.6
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
..+++.+|++++|+|+++..... ....+ +.... .+.|+++++||+|+..
T Consensus 97 ~~~l~~aD~aIlVvDa~~gv~~~-t~~l~-~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 97 YRTLTAVDSALMVIDAAKGVEPQ-TRKLM-EVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred HHHHHHCCEEEEEEecCCCCCHH-HHHHH-HHHHh---cCCCEEEEEECCcccc
Confidence 35688999999999998653221 12222 22222 4789999999999764
No 265
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.31 E-value=1.8e-06 Score=56.75 Aligned_cols=101 Identities=17% Similarity=0.295 Sum_probs=70.7
Q ss_pred chhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-----c--------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-----C-------- 58 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----~-------- 58 (106)
-|.+++.++++++||+++++ ...+.+....+..+.......+.|++|++||.|+-. .
T Consensus 252 KW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp 331 (389)
T PF00503_consen 252 KWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFP 331 (389)
T ss_dssp GGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTST
T ss_pred hHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCC
Confidence 49999999999999999862 245777777888888888888999999999999511 1
Q ss_pred -------CCHHHHHHHhC----CCCcCC---CceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 59 -------MSVAEVHRALG----LENLKD---RTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 59 -------~~~~~~~~~~~----~~~~~~---~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
.....+.+.+. ...... ..+.++.++|.+..++..+|..+.+.+
T Consensus 332 ~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 332 DYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp TGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 12223322222 111111 566788999999999999998887653
No 266
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.30 E-value=4.6e-06 Score=53.74 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=53.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCc--CCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENL--KDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~--~~~~~~~ 80 (106)
...+|.++++.++. +.+++.......+ ...-++|+||+|+.+... ..++...+..... ..+..++
T Consensus 167 ~~~aD~vlvv~~p~---~gd~iq~~k~gi~------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pV 237 (332)
T PRK09435 167 AGMVDFFLLLQLPG---AGDELQGIKKGIM------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPV 237 (332)
T ss_pred HHhCCEEEEEecCC---chHHHHHHHhhhh------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCE
Confidence 45689999997643 3333332121111 223489999999765322 2234444432111 1133589
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+.+||+++.|++++++.+.++..
T Consensus 238 i~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 238 LTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 267
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.29 E-value=9.5e-06 Score=53.46 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=43.4
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEeeCCCCCCcCC-H----HHHHHHhCCCCcCCCceEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILANKQDMKNCMS-V----AEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~~ 81 (106)
.++|++++|+|++....... .+.+. .... .+.|. ++++||+|+.+... . .++.+.+.........++++
T Consensus 97 ~~~D~~ilVvda~~g~~~qt-~e~l~-~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii 171 (394)
T TIGR00485 97 AQMDGAILVVSATDGPMPQT-REHIL-LARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPII 171 (394)
T ss_pred hhCCEEEEEEECCCCCcHHH-HHHHH-HHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEE
Confidence 45699999999986432221 12222 2222 24565 47899999864221 1 12333333222122237899
Q ss_pred EccccCCC
Q psy12794 82 KTSAKEGE 89 (106)
Q Consensus 82 ~~sa~~~~ 89 (106)
.+||.++.
T Consensus 172 ~vSa~~g~ 179 (394)
T TIGR00485 172 RGSALKAL 179 (394)
T ss_pred ECcccccc
Confidence 99999875
No 268
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.28 E-value=1.8e-05 Score=50.63 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=37.2
Q ss_pred CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+|.+++.||+|+.+. +++..... ...++.+||+.+.|++++.+.+.+.+
T Consensus 240 ~p~l~v~NKiD~~~~---e~~~~l~~-------~~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 240 KPALYVVNKIDLPGL---EELERLAR-------KPNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeEEEEecccccCH---HHHHHHHh-------ccceEEEecccCCCHHHHHHHHHHhh
Confidence 799999999998652 22333222 12688999999999999999998876
No 269
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.27 E-value=1.4e-05 Score=50.25 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALG 69 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~ 69 (106)
|..+++.+|++++|+|+++...... ...+ +.... .++|++++.||+|+.+.. ...++.+.++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~-~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVW-RQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHH-HHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 5678899999999999976543222 1222 22222 468999999999986431 2344555554
No 270
>PRK00049 elongation factor Tu; Reviewed
Probab=98.26 E-value=1.2e-05 Score=53.11 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=52.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCCCCcCC-H----HHHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDMKNCMS-V----AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 80 (106)
...+|++++|+|++....... .. +..+... .+.|.+ ++.||+|+.+... . .++.+.+..........++
T Consensus 96 ~~~aD~~llVVDa~~g~~~qt-~~-~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~i 170 (396)
T PRK00049 96 AAQMDGAILVVSAADGPMPQT-RE-HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI 170 (396)
T ss_pred hccCCEEEEEEECCCCCchHH-HH-HHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcE
Confidence 467999999999976533221 12 2233333 357875 6899999864211 1 1333333321112235789
Q ss_pred EEccccCCC----------ChHHHHHHHHHH
Q psy12794 81 FKTSAKEGE----------GLNDSMDWLSNA 101 (106)
Q Consensus 81 ~~~sa~~~~----------~v~~~~~~l~~~ 101 (106)
+.+||.++. |+..+++.|...
T Consensus 171 v~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 171 IRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred EEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 999999875 455666666554
No 271
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.26 E-value=8.8e-06 Score=51.92 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred CCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 10 TDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 10 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
.++++|++|++... +.++....+.+.... .+.|+++|.||+|.......+++...+. ...+.....+++..
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~ 320 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL----EEGGEEPLKISATK 320 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH----hhccccccceeeee
Confidence 46799999998654 344444445554333 3489999999999875444444444433 22233466788889
Q ss_pred CCChHHHHHHHHHHH
Q psy12794 88 GEGLNDSMDWLSNAL 102 (106)
Q Consensus 88 ~~~v~~~~~~l~~~~ 102 (106)
+.+++.+.+.+....
T Consensus 321 ~~~~d~~~~~v~~~a 335 (346)
T COG1084 321 GCGLDKLREEVRKTA 335 (346)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999998887777653
No 272
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.26 E-value=9.3e-06 Score=51.70 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=51.1
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHH----hCCC--CcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRA----LGLE--NLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~----~~~~--~~~~~~~~~ 80 (106)
...+|.++++.++. +.+++......+ .++|.++++||+|+............ +... .......++
T Consensus 145 ~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v 215 (300)
T TIGR00750 145 ANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPV 215 (300)
T ss_pred HHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCE
Confidence 34567777775432 334433322222 35788999999998654322111111 1100 001123468
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+.+||++++|++++++++....
T Consensus 216 ~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 216 LTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred EEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 273
>CHL00071 tufA elongation factor Tu
Probab=98.25 E-value=7.4e-06 Score=54.22 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=46.6
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCCH-----HHHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMSV-----AEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 80 (106)
...+|++++|+|++....... .+ ...+... .++| ++++.||+|+.+.... .++.+.+..........++
T Consensus 96 ~~~~D~~ilVvda~~g~~~qt-~~-~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i 170 (409)
T CHL00071 96 AAQMDGAILVVSAADGPMPQT-KE-HILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPI 170 (409)
T ss_pred HHhCCEEEEEEECCCCCcHHH-HH-HHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 467999999999976432221 12 2233332 3567 7789999998642211 1333333322112234789
Q ss_pred EEccccCCCC
Q psy12794 81 FKTSAKEGEG 90 (106)
Q Consensus 81 ~~~sa~~~~~ 90 (106)
+.+||.+|.+
T Consensus 171 i~~Sa~~g~n 180 (409)
T CHL00071 171 VSGSALLALE 180 (409)
T ss_pred EEcchhhccc
Confidence 9999999864
No 274
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=1.6e-05 Score=50.37 Aligned_cols=87 Identities=29% Similarity=0.355 Sum_probs=57.4
Q ss_pred hhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH--HHHHHhCCCCcCCCceEEEE
Q psy12794 6 YYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA--EVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 82 (106)
-+.|.|-.++|+...+|+ +..-+++++.- .+..+...+++.||+|+.+..... +....+ ...+++++.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~----ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~ 146 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVL----AEAGGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLF 146 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHH----HHHcCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEE
Confidence 345677788888877664 33333333322 222567778889999997654333 233333 345789999
Q ss_pred ccccCCCChHHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~ 101 (106)
+|++++.|++++.+.+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998887653
No 275
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.20 E-value=1.3e-05 Score=53.01 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=47.1
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCC--CCcCCCceEEEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGL--ENLKDRTFQIFK 82 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~ 82 (106)
...+|++++|+|++......... ...+.... ..++++++.||+|+..... ..++.+.+.. ........+++.
T Consensus 101 ~~~aD~allVVda~~G~~~qt~~--~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iip 176 (406)
T TIGR02034 101 ASTADLAVLLVDARKGVLEQTRR--HSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIP 176 (406)
T ss_pred HhhCCEEEEEEECCCCCccccHH--HHHHHHHc--CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEE
Confidence 56899999999997543222111 11122221 2357899999999864211 1122222210 000112467999
Q ss_pred ccccCCCChHH
Q psy12794 83 TSAKEGEGLND 93 (106)
Q Consensus 83 ~sa~~~~~v~~ 93 (106)
+||.+|.|+.+
T Consensus 177 iSA~~g~ni~~ 187 (406)
T TIGR02034 177 LSALKGDNVVS 187 (406)
T ss_pred eecccCCCCcc
Confidence 99999999875
No 276
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.18 E-value=3.3e-06 Score=40.53 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCeEEEEEECCCcch--HHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 10 TDAIIYVVDSSDRDR--IGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
.++++|++|++.... .++....+.+.... ..++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 467999999996654 44443334443322 24799999999998
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.16 E-value=2e-05 Score=52.82 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=48.2
Q ss_pred hccCCeEEEEEECCCcch---H---HHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCC----cCC----HHHHHHHhCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDR---I---GISKEELLAMLKEEELRDAI-LVILANKQDMKN----CMS----VAEVHRALGLE 71 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~----~~~----~~~~~~~~~~~ 71 (106)
...+|++++|+|++.... + ....+.+ .+... .++| ++++.||+|... ... ..++.+.+...
T Consensus 106 ~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~---~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~ 181 (446)
T PTZ00141 106 TSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT---LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKV 181 (446)
T ss_pred hhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH---cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 467999999999976420 0 1111112 22222 3444 679999999532 111 22334444322
Q ss_pred CcCCCceEEEEccccCCCChHH
Q psy12794 72 NLKDRTFQIFKTSAKEGEGLND 93 (106)
Q Consensus 72 ~~~~~~~~~~~~sa~~~~~v~~ 93 (106)
......++++.+||.+|.|+.+
T Consensus 182 g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 182 GYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCcccceEEEeecccCCCccc
Confidence 2233458999999999999863
No 278
>KOG1424|consensus
Probab=98.16 E-value=4.5e-06 Score=55.96 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=53.9
Q ss_pred chhhh---hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce
Q psy12794 2 YWRCY---YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 78 (106)
+|+.. +..+|++|.++|+.+|--|.--+ ++.+.+... ..+..++++||+||..........+++. ..++
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~d--Le~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni 235 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPD--LEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNI 235 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChh--HHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCc
Confidence 46665 56799999999999886554332 556655533 3478899999999976554555556664 3457
Q ss_pred EEEEccccC
Q psy12794 79 QIFKTSAKE 87 (106)
Q Consensus 79 ~~~~~sa~~ 87 (106)
+++..||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 888888875
No 279
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.10 E-value=4.7e-06 Score=56.12 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=47.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCC--CCcC-CCceEEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGL--ENLK-DRTFQIF 81 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~--~~~~-~~~~~~~ 81 (106)
...+|++++|+|++......... ...+.... ..+|++++.||+|+.+.. ...++.+.+.. .... ....+++
T Consensus 128 l~~aD~allVVDa~~G~~~qt~~--~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ii 203 (474)
T PRK05124 128 ASTCDLAILLIDARKGVLDQTRR--HSFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFV 203 (474)
T ss_pred HhhCCEEEEEEECCCCccccchH--HHHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 47899999999997543211111 11111111 235889999999986321 12223222210 0001 1246899
Q ss_pred EccccCCCChHHH
Q psy12794 82 KTSAKEGEGLNDS 94 (106)
Q Consensus 82 ~~sa~~~~~v~~~ 94 (106)
.+||++|.|+.+.
T Consensus 204 pvSA~~g~ni~~~ 216 (474)
T PRK05124 204 PLSALEGDNVVSQ 216 (474)
T ss_pred EEEeecCCCcccc
Confidence 9999999998764
No 280
>KOG1144|consensus
Probab=98.09 E-value=1.7e-05 Score=55.65 Aligned_cols=93 Identities=27% Similarity=0.236 Sum_probs=56.4
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------CC------------HHHHH---
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------MS------------VAEVH--- 65 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------~~------------~~~~~--- 65 (106)
-..||.+|+|+|+...-....+. -.++++. .+.|+||+.||+|..-. .. ..++.
T Consensus 561 sslC~~aIlvvdImhGlepqtiE--Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~ 635 (1064)
T KOG1144|consen 561 SSLCDLAILVVDIMHGLEPQTIE--SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERL 635 (1064)
T ss_pred ccccceEEEEeehhccCCcchhH--HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHH
Confidence 45699999999997432222111 1233333 57899999999995210 00 00111
Q ss_pred ----HHhCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 66 ----RALGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 66 ----~~~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..|....+ ....+.++.+||.+|+|+.+++.+|++..+.
T Consensus 636 ~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 636 NNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 11111111 1123678999999999999999999887654
No 281
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.9e-05 Score=50.55 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=57.2
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
|++++|++.+.+..=-+..+.+ +.-.-..-+.++++-||+|+.+. ...+++.++..-. -..+.+++.+||.
T Consensus 111 DgAlLvIaANEpcPQPQT~EHl---~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt--~Ae~aPIIPiSA~ 185 (415)
T COG5257 111 DGALLVIAANEPCPQPQTREHL---MALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGT--VAENAPIIPISAQ 185 (415)
T ss_pred cceEEEEecCCCCCCCchHHHH---HHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhccc--ccCCCceeeehhh
Confidence 7899999988653211111111 11111134799999999998753 2334555554321 1235689999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy12794 87 EGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++.+++.+.+.+.
T Consensus 186 ~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 186 HKANIDALIEAIEKYIP 202 (415)
T ss_pred hccCHHHHHHHHHHhCC
Confidence 99999999999998875
No 282
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.08 E-value=2e-05 Score=46.40 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=28.5
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHH--hcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAM--LKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
|++++|+|+..+.+... ..+.+. +.. .++|+++|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~---~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAG---GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence 78999999987533221 123333 222 46899999999998643
No 283
>PRK12739 elongation factor G; Reviewed
Probab=98.08 E-value=5.2e-05 Score=53.37 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=34.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
|..+++.+|++++|+|+++.....+. .+...... .++|.+++.||+|+..
T Consensus 90 ~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 90 VERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 45678899999999999875433222 22233332 4689999999999864
No 284
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.07 E-value=4.1e-05 Score=53.86 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=36.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
+..+++.+|++++|+|+++........ .+ ..... .++|+++++||+|+...
T Consensus 92 ~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 92 VERSLRVLDGAVAVLDAVGGVQPQSET-VW-RQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHhCEEEEEEeCCCCCChhHHH-HH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 566789999999999998754443322 22 22332 46899999999998753
No 285
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.06 E-value=1.5e-05 Score=47.71 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=54.6
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-C--------CHHHHHHHhCCC---Cc-
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-M--------SVAEVHRALGLE---NL- 73 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~--------~~~~~~~~~~~~---~~- 73 (106)
+.++|.++++.+. ++...+..+.+.+.. .++|+++|+||+|+... . ...++.+.+... .+
T Consensus 78 ~~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 78 FSEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred ccCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 5678988888542 234444344444444 36899999999997321 0 112222211100 00
Q ss_pred --CCCceEEEEcccc--CCCChHHHHHHHHHHHhh
Q psy12794 74 --KDRTFQIFKTSAK--EGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 74 --~~~~~~~~~~sa~--~~~~v~~~~~~l~~~~~~ 104 (106)
.....+++.+|+. .+.|+..+.+.+...+.+
T Consensus 151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1123478899998 678999999999887764
No 286
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.05 E-value=1.9e-05 Score=54.96 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=46.8
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCC--CCcCCCceEEEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGL--ENLKDRTFQIFK 82 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~ 82 (106)
...+|++++|+|++......... ...+.... ..++++++.||+|+.+. ....++...+.. ........+++.
T Consensus 125 ~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iip 200 (632)
T PRK05506 125 ASTADLAIILVDARKGVLTQTRR--HSFIASLL--GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIP 200 (632)
T ss_pred HHhCCEEEEEEECCCCccccCHH--HHHHHHHh--CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEE
Confidence 46799999999997543221111 11112211 23688999999998631 111222222210 000112457899
Q ss_pred ccccCCCChHH
Q psy12794 83 TSAKEGEGLND 93 (106)
Q Consensus 83 ~sa~~~~~v~~ 93 (106)
+||++|.|+.+
T Consensus 201 iSA~~g~ni~~ 211 (632)
T PRK05506 201 ISALKGDNVVT 211 (632)
T ss_pred EecccCCCccc
Confidence 99999999874
No 287
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.03 E-value=8.9e-05 Score=50.69 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=32.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.+++.+|++++|+|+++.. ......+.+.... .+.|+++++||+|+..
T Consensus 99 ~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 99 RTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 3578899999999997642 2222222233332 4689999999999753
No 288
>PLN03127 Elongation factor Tu; Provisional
Probab=98.03 E-value=5.7e-05 Score=50.68 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=50.5
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 81 (106)
..+|++++|+|++....... . .....+.. .++| ++++.||+|+.+... .+ ++.+.+..........+++
T Consensus 146 ~~aD~allVVda~~g~~~qt-~-e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpii 220 (447)
T PLN03127 146 AQMDGGILVVSAPDGPMPQT-K-EHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPII 220 (447)
T ss_pred hhCCEEEEEEECCCCCchhH-H-HHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence 46899999999976432221 2 22233333 3577 578899999864211 11 2222222111112346788
Q ss_pred Ecccc---CCCC-------hHHHHHHHHHHH
Q psy12794 82 KTSAK---EGEG-------LNDSMDWLSNAL 102 (106)
Q Consensus 82 ~~sa~---~~~~-------v~~~~~~l~~~~ 102 (106)
.+||. +|.| +..+++.+.+.+
T Consensus 221 p~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 221 RGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred EeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 88776 4555 567777776654
No 289
>KOG1532|consensus
Probab=98.03 E-value=3.3e-05 Score=48.58 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=55.6
Q ss_pred CeEEEEEECC---CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-------HHHHHHHhCC--C-------
Q psy12794 11 DAIIYVVDSS---DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-------VAEVHRALGL--E------- 71 (106)
Q Consensus 11 d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-------~~~~~~~~~~--~------- 71 (106)
.++++++|.. ++.+|-..-.+-..++-. .+.|.++++||+|+.+..- .+.+.+.+.. .
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~ 225 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT 225 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence 4678888874 334444333233333333 5789999999999876421 1122222221 0
Q ss_pred -------CcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 72 -------NLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 72 -------~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.....++..+.+|+.+|.|.+++|..+-..+.
T Consensus 226 ~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 226 RSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred hhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 00124578999999999999999998876554
No 290
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.00 E-value=2.4e-05 Score=47.86 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=34.0
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
..+++.+|++++|+|+++....... ..+..... .++|+++++||+|+.
T Consensus 91 ~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 91 TAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 4578999999999999876554432 22222222 357999999999975
No 291
>KOG1490|consensus
Probab=98.00 E-value=6.2e-06 Score=55.36 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=55.5
Q ss_pred eEEEEEECCCcch--HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEEEEccc
Q psy12794 12 AIIYVVDSSDRDR--IGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 12 ~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++|+.|.+.... ..+....+..+ .+...++|.|+|+||+|+....... ++.+.+. ...+.+++++|.
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~----~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTII----DDGNVKVVQTSC 323 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHH----hccCceEEEecc
Confidence 4788899986543 33332222221 2223579999999999976543322 2333332 334579999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
.+.+|+.++....++.+.
T Consensus 324 ~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALL 341 (620)
T ss_pred cchhceeeHHHHHHHHHH
Confidence 999999998887776553
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.95 E-value=3.1e-05 Score=47.87 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC------------------------CHHHH
Q psy12794 10 TDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM------------------------SVAEV 64 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------------------~~~~~ 64 (106)
.-++++++|.....+..... ..+..... ....+.|.+.|.||+|+.+.. ...++
T Consensus 123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i 201 (238)
T PF03029_consen 123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEI 201 (238)
T ss_dssp --EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHH
T ss_pred ceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 44789999987433322211 11111111 001368999999999987521 00112
Q ss_pred HHHhCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHH
Q psy12794 65 HRALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
.+.+. ..... .++.+|+++++|+++++..+-+.+
T Consensus 202 ~~~l~----~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 202 AELLD----DFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHCC----CCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHh----hcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 22222 22233 899999999999999999887654
No 293
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.00011 Score=48.59 Aligned_cols=89 Identities=22% Similarity=0.214 Sum_probs=55.8
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEG 88 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 88 (106)
..|.+++|+|+++.-...... ....+.. +..+..++|.||+|..+....++..+.+.... .....+++.+|+++|
T Consensus 73 ~~d~alLvV~~deGl~~qtgE--hL~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g 147 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGE--HLLILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTG 147 (447)
T ss_pred CCceEEEEEeCccCcchhhHH--HHHHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccC
Confidence 578999999996543322221 1122222 13456699999999865432222222221111 133557899999999
Q ss_pred CChHHHHHHHHHHH
Q psy12794 89 EGLNDSMDWLSNAL 102 (106)
Q Consensus 89 ~~v~~~~~~l~~~~ 102 (106)
+|++++.+.|.+..
T Consensus 148 ~GI~~Lk~~l~~L~ 161 (447)
T COG3276 148 RGIEELKNELIDLL 161 (447)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998876
No 294
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.90 E-value=1.9e-05 Score=49.98 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred CCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 42 RDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
...+-+++.||+|+.+.. ....+.+.+.. .....+++.+||++|+|++++.+||..+
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346779999999986532 23334444331 1235689999999999999999999874
No 295
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=5.6e-05 Score=49.69 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=48.2
Q ss_pred ccCCeEEEEEECCCcc---h--HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhC----CCCcCCC
Q psy12794 8 SNTDAIIYVVDSSDRD---R--IGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALG----LENLKDR 76 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~----~~~~~~~ 76 (106)
.++|+.|+|+|+.... . .....++..-+... +.-..++++.||+|+.+- ...+++..... .......
T Consensus 107 sqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~ 184 (428)
T COG5256 107 SQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK 184 (428)
T ss_pred hhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4689999999998652 1 11111111111122 234789999999998751 11122222211 1111233
Q ss_pred ceEEEEccccCCCChHH
Q psy12794 77 TFQIFKTSAKEGEGLND 93 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~ 93 (106)
+.+|+.+||..|.|+.+
T Consensus 185 ~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 185 DVPFIPISGFKGDNLTK 201 (428)
T ss_pred CCeEEecccccCCcccc
Confidence 67899999999999854
No 296
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.87 E-value=6e-05 Score=45.64 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=34.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
+..++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 88 ~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 88 VAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 4567889999999999987665532 222222222 358999999999964
No 297
>PRK00007 elongation factor G; Reviewed
Probab=97.86 E-value=0.00025 Score=50.08 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=32.0
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.++.+|++++|+|+.......... +...... .++|.+++.||+|+.+
T Consensus 95 al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 95 SLRVLDGAVAVFDAVGGVEPQSET--VWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHcCEEEEEEECCCCcchhhHH--HHHHHHH---cCCCEEEEEECCCCCC
Confidence 467889999999987654333222 2233333 4689999999999864
No 298
>PLN03126 Elongation factor Tu; Provisional
Probab=97.82 E-value=0.00012 Score=49.56 Aligned_cols=78 Identities=24% Similarity=0.240 Sum_probs=45.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-HH----HHHHHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-VA----EVHRALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~ 80 (106)
...+|++++|+|+.+...... .+.+ ..... .++| ++++.||+|+.+... .+ ++.+.+....+.....++
T Consensus 165 ~~~aD~ailVVda~~G~~~qt-~e~~-~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ 239 (478)
T PLN03126 165 AAQMDGAILVVSGADGPMPQT-KEHI-LLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPI 239 (478)
T ss_pred HhhCCEEEEEEECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 456899999999986533222 2222 22222 3566 778999999864211 11 233333322122246789
Q ss_pred EEccccCCC
Q psy12794 81 FKTSAKEGE 89 (106)
Q Consensus 81 ~~~sa~~~~ 89 (106)
+.+||.++.
T Consensus 240 vp~Sa~~g~ 248 (478)
T PLN03126 240 ISGSALLAL 248 (478)
T ss_pred EEEEccccc
Confidence 999998874
No 299
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.77 E-value=0.00019 Score=44.96 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=35.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
+..+++.+|++++|+|+++........ .+. .... .+.|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~-~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWE-FADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHH-HHHH---cCCCEEEEEECCccCCC
Confidence 456788999999999998765443222 222 2222 46899999999998754
No 300
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.77 E-value=3e-05 Score=46.27 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=51.6
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAMLK-EEELRDAILVILANKQDMKNCMS--VAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
+.-|+|+|++..+. . -.+ .+.+.. .=++|.||.|+..... .+...+.... -....+++++|+++
T Consensus 119 ~~~v~VidvteGe~---~------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~kt 185 (202)
T COG0378 119 HLRVVVIDVTEGED---I------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKT 185 (202)
T ss_pred ceEEEEEECCCCCC---C------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCC
Confidence 47788999876432 0 011 222233 5588999999976432 2434333321 12456999999999
Q ss_pred CCChHHHHHHHHHHH
Q psy12794 88 GEGLNDSMDWLSNAL 102 (106)
Q Consensus 88 ~~~v~~~~~~l~~~~ 102 (106)
|+|++++.+|+....
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999987654
No 301
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.74 E-value=0.00018 Score=39.38 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=49.7
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
..++++++.++.+++.+++.+++.. |...+... ...+.|.++++||.|+.... ++.+. ....++++
T Consensus 41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~--------~~~~~~~~ 106 (124)
T smart00010 41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATE--------EGLEFAET 106 (124)
T ss_pred ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHH--------HHHHHHHH
Confidence 4578899999999999988887654 34333332 22568899999999974321 11111 11245678
Q ss_pred cccCCCChH
Q psy12794 84 SAKEGEGLN 92 (106)
Q Consensus 84 sa~~~~~v~ 92 (106)
|++++.|+.
T Consensus 107 s~~~~~~~~ 115 (124)
T smart00010 107 SAKTPEEGE 115 (124)
T ss_pred hCCCcchhh
Confidence 999999875
No 302
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.61 E-value=0.00017 Score=46.45 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=52.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
.....+|.++-|+|+.+|.+...- .+.++.. ++|.++|+||+|+.+.....+..+.+.. ..+...+.++
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~--~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~----~~~~~~~~v~ 98 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNP--ELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK----EEGIKPIFVS 98 (322)
T ss_pred HhcccCCEEEEEEeccccccccCc--cHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh----cCCCccEEEE
Confidence 356788999999999887553322 2444443 4666999999999765444455555542 2244566777
Q ss_pred ccCCCChHHHH
Q psy12794 85 AKEGEGLNDSM 95 (106)
Q Consensus 85 a~~~~~v~~~~ 95 (106)
+..+.+...+.
T Consensus 99 ~~~~~~~~~i~ 109 (322)
T COG1161 99 AKSRQGGKKIR 109 (322)
T ss_pred eecccCccchH
Confidence 77777766555
No 303
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.60 E-value=0.00027 Score=47.52 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=59.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCc--CCCceEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENL--KDRTFQI 80 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~~ 80 (106)
.+.-+|++++++|+...+-+. ....+.+.+. .+.+.|+|.||+|.+.+... +++.+.+..... ....+++
T Consensus 88 vl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 88 VLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred hhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 456789999999998654322 2222334443 35566888999998875432 233333322211 2246789
Q ss_pred EEccccCCC----------ChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGE----------GLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~----------~v~~~~~~l~~~~~ 103 (106)
+..||..|. +...+|+.+.+++.
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 999998763 57788998888775
No 304
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.60 E-value=7.1e-05 Score=46.62 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=50.3
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCC--cCCCceEEEEcc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLEN--LKDRTFQIFKTS 84 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~s 84 (106)
.-+|.+++|.-+...+....+..=+.+ .+=++|.||.|.+... ...++...+.... ...+..+++.+|
T Consensus 141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 141 DMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp TTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 457888888887655443222211222 2448999999965432 2233444333211 133457999999
Q ss_pred ccCCCChHHHHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~ 102 (106)
|.+++|++++.+.+.++-
T Consensus 212 A~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 999999999999888754
No 305
>KOG1707|consensus
Probab=97.59 E-value=0.00086 Score=46.05 Aligned_cols=85 Identities=22% Similarity=0.207 Sum_probs=56.9
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----CCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----MSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
..||++.++||.+++.+|..+.......... ...|++.|++|+|+.+. ....++...++.. +.+.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~ 563 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIH 563 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCee
Confidence 4589999999999999998877655444333 67899999999998653 2334555555432 2233
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+|.+.... .++|..|+.+..
T Consensus 564 ~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 564 ISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred eccCCCCC-chHHHHHHHhhh
Confidence 44443223 788888887653
No 306
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.58 E-value=0.00021 Score=43.80 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=43.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEeeCCCCCCcC-CHHHHH----HHhCCCCcCCCceEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILANKQDMKNCM-SVAEVH----RALGLENLKDRTFQI 80 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 80 (106)
.+.+|.+++|+|.+......+. .+...+.. .+.|. +++.||+|+.... ...++. +.+.... ....++
T Consensus 101 ak~aDvVllviDa~~~~~~~~~--~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~--~~~~ki 173 (225)
T cd01882 101 AKVADLVLLLIDASFGFEMETF--EFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV--YQGAKL 173 (225)
T ss_pred HHhcCEEEEEEecCcCCCHHHH--HHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh--CCCCcE
Confidence 4679999999999764433221 23333333 34664 5599999985321 122222 2222111 124589
Q ss_pred EEccccCCCC
Q psy12794 81 FKTSAKEGEG 90 (106)
Q Consensus 81 ~~~sa~~~~~ 90 (106)
+.+||++...
T Consensus 174 ~~iSa~~~~~ 183 (225)
T cd01882 174 FYLSGIVHGR 183 (225)
T ss_pred EEEeeccCCC
Confidence 9999998744
No 307
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00032 Score=45.66 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=45.9
Q ss_pred cCCeEEEEEECCCcchHHHHHH---HHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCC--CcCCCceEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKE---ELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLE--NLKDRTFQIF 81 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~ 81 (106)
.||+.|+++|+.. ...+..+ ++..++ .-+.++++.||+|+.+- ....++...+... .+......++
T Consensus 109 TadlAIlLVDAR~--Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~I 181 (431)
T COG2895 109 TADLAILLVDARK--GVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFI 181 (431)
T ss_pred cccEEEEEEecch--hhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 4899999999943 2222221 122222 34799999999999752 2223333332211 1122345899
Q ss_pred EccccCCCChH
Q psy12794 82 KTSAKEGEGLN 92 (106)
Q Consensus 82 ~~sa~~~~~v~ 92 (106)
++||..|.|+-
T Consensus 182 PiSAl~GDNV~ 192 (431)
T COG2895 182 PISALLGDNVV 192 (431)
T ss_pred echhccCCccc
Confidence 99999999874
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.46 E-value=0.00039 Score=42.89 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=54.4
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCcCCHHH--------HHHHhCCCCc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAE--------VHRALGLENL 73 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~--------~~~~~~~~~~ 73 (106)
...+++++++|||+|+.+.+-.+++. .+...+.. ....+..+.+..+|+|+.......+ +.+... ..
T Consensus 71 ~~if~~v~~LIyV~D~qs~~~~~~l~-~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~--~~ 147 (232)
T PF04670_consen 71 EEIFSNVGVLIYVFDAQSDDYDEDLA-YLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE--DL 147 (232)
T ss_dssp HHHHCTESEEEEEEETT-STCHHHHH-HHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHhccCEEEEEEEcccccHHHHHH-HHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh--hc
Confidence 45789999999999998554333333 23332221 1125789999999999754321111 122221 00
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
....+.++.+|.-+ ..+.+.+..++..+.
T Consensus 148 ~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 148 GIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp T-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred cccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 11247899988876 588888888877654
No 309
>KOG1191|consensus
Probab=97.37 E-value=0.0008 Score=45.39 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=54.7
Q ss_pred hhccCCeEEEEEEC--CCcchHHHHHHHHHHHhcCc-----CCCCCeEEEEeeCCCCCCcCCHH-HHHHHhCCCCcCCCc
Q psy12794 6 YYSNTDAIIYVVDS--SDRDRIGISKEELLAMLKEE-----ELRDAILVILANKQDMKNCMSVA-EVHRALGLENLKDRT 77 (106)
Q Consensus 6 ~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~-----~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~ 77 (106)
..+.+|++++|+|+ +...+...+.+.+...-... .....|++++.||.|+....... .....+......+..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 35789999999999 33333333232232221111 11247999999999986542111 100011100111122
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
-...++|+++++|...+.+.+...+.
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHH
Confidence 34556999999999999888776553
No 310
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0028 Score=40.53 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=51.9
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCC----CcCCCceEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLE----NLKDRTFQIFK 82 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~ 82 (106)
.-+|.+++|.-+.-.+...-+. .-++ +..=++|.||.|..+.. ...++...+... .-..+..+++.
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK---~Gim------EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~ 233 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIK---AGIM------EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVT 233 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHH---hhhh------hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeE
Confidence 3467777776554333333222 1221 23338899999965431 122233333222 11345678999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||.+|+|++++++.+.++..
T Consensus 234 t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 234 TSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eeeccCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 311
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.35 E-value=0.00048 Score=44.41 Aligned_cols=56 Identities=27% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHH-HHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMD-WLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~-~l~~~~~ 103 (106)
..+|+++++||.|+.+. .+..+.+.. .....+++.+||+.+.|+.++.+ .+.+.+.
T Consensus 213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 213 RSKPMVIAANKADIPDA---ENNISKLRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred cCCcEEEEEEHHHccCh---HHHHHHHHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 46899999999997532 222222221 12245799999999999999997 5887764
No 312
>KOG2423|consensus
Probab=97.29 E-value=0.0041 Score=41.42 Aligned_cols=90 Identities=24% Similarity=0.319 Sum_probs=51.7
Q ss_pred chhhhhc---cCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCC
Q psy12794 2 YWRCYYS---NTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDR 76 (106)
Q Consensus 2 ~~~~~~~---~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
+|...|+ .+|++|.|+|+.+|- .... ++++++.. ...+.++.|.||+||...-........+. +..
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~----ve~ylkke-~phKHli~vLNKvDLVPtwvt~~Wv~~lS----key 273 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKH----VEEYLKKE-KPHKHLIYVLNKVDLVPTWVTAKWVRHLS----KEY 273 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHH----HHHHHhhc-CCcceeEEEeeccccccHHHHHHHHHHHh----hhC
Confidence 5666654 678999999998763 2333 44555432 25689999999999865422222333332 111
Q ss_pred ceEEEEccccCCCChHHHHHHHHH
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
.---|..|.....|-..+...|.+
T Consensus 274 PTiAfHAsi~nsfGKgalI~llRQ 297 (572)
T KOG2423|consen 274 PTIAFHASINNSFGKGALIQLLRQ 297 (572)
T ss_pred cceeeehhhcCccchhHHHHHHHH
Confidence 222344566666665555554443
No 313
>KOG0458|consensus
Probab=97.25 E-value=0.00083 Score=46.07 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=48.9
Q ss_pred cCCeEEEEEECCCcc---hHH--HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhC-----CCCcCCC
Q psy12794 9 NTDAIIYVVDSSDRD---RIG--ISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALG-----LENLKDR 76 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~-----~~~~~~~ 76 (106)
++|.+++|+|++... .|+ ...++...+++.. .-..++++.||.|+.+ +....++...+. ...+...
T Consensus 278 qaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es 355 (603)
T KOG0458|consen 278 QADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKES 355 (603)
T ss_pred ccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccC
Confidence 589999999997431 111 1112233344442 3478999999999864 111222222221 1112334
Q ss_pred ceEEEEccccCCCChHH
Q psy12794 77 TFQIFKTSAKEGEGLND 93 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~ 93 (106)
++.|+.||+.+|+|+..
T Consensus 356 ~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 356 SVKFIPISGLSGENLIK 372 (603)
T ss_pred CcceEecccccCCcccc
Confidence 67899999999999853
No 314
>KOG2484|consensus
Probab=97.04 E-value=0.0023 Score=42.24 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=40.9
Q ss_pred hhccCCeEEEEEECCCcchH--HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRI--GISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
-+..+|+++.|.|+.+|.+- .++..++.. .+ .++..|+|.||+|+......++...++.
T Consensus 143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~--~~---gnKkLILVLNK~DLVPrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQ--AH---GNKKLILVLNKIDLVPREVVEKWLVYLR 203 (435)
T ss_pred HHhhhheEEEeeeccCCCCCCChhHHHHHHh--cc---CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence 35678999999999988542 233332211 12 4589999999999977666666666665
No 315
>KOG0410|consensus
Probab=97.03 E-value=0.00086 Score=43.32 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=52.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe----EEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI----LVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
...+|.++.|.|++.|. .+.........++.......| ++=|-||+|..+... .+ +++ -.+.
T Consensus 255 VaeadlllHvvDiShP~-ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~----e~-------E~n--~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPN-AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----EE-------EKN--LDVG 320 (410)
T ss_pred HhhcceEEEEeecCCcc-HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC----cc-------ccC--Cccc
Confidence 46789999999999875 444444556666664443333 445666666433211 10 111 2577
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++...+-..+.
T Consensus 321 isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccCccHHHHHHHHHHHhh
Confidence 999999999999887765543
No 316
>KOG0705|consensus
Probab=96.97 E-value=0.001 Score=45.72 Aligned_cols=95 Identities=11% Similarity=0.201 Sum_probs=66.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCceEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
.|-.-+|++||||...+..+|+.+......+.........|.++++++--.... ....+..+... ....+.+
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~krcsy 166 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMKRCSY 166 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcCccce
Confidence 355668999999999999999888765555544444566899999988543221 12222222222 3346789
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++.+|.+|.+++..|..++..+.
T Consensus 167 ~et~atyGlnv~rvf~~~~~k~i 189 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQKIV 189 (749)
T ss_pred eecchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 317
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.96 E-value=0.0041 Score=33.91 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=26.6
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
+..+|++++|+|.+++.. +... .+.+.++ .++|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~-~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDK-NILRELK----NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHH-HHHHHHH----TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHH-HHHHHHh----cCCCEEEEEcC
Confidence 478999999999776322 1122 2323332 46899999998
No 318
>KOG0461|consensus
Probab=96.78 E-value=0.0083 Score=39.39 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=47.0
Q ss_pred CCeEEEEEECCCcchHHHHHHHH-HHHhcCcCCCCCeEEEEeeCCCCCCc-C---CHHHH----HHHhCCCCcCCCceEE
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEEL-LAMLKEEELRDAILVILANKQDMKNC-M---SVAEV----HRALGLENLKDRTFQI 80 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~~~~-~---~~~~~----~~~~~~~~~~~~~~~~ 80 (106)
.|..++|+|+............+ -+. .-+..++|.||+|.... . ..++. ...+.... ...+.++
T Consensus 94 iDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~-f~g~~PI 166 (522)
T KOG0461|consen 94 IDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG-FDGNSPI 166 (522)
T ss_pred eeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC-cCCCCce
Confidence 37789999997432222111111 121 23567888899986432 1 11111 22221111 1234689
Q ss_pred EEccccCC----CChHHHHHHHHHHH
Q psy12794 81 FKTSAKEG----EGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~----~~v~~~~~~l~~~~ 102 (106)
+++||..| +++.++.+.|...+
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHhh
Confidence 99999999 67777777666554
No 319
>KOG0085|consensus
Probab=96.70 E-value=0.0016 Score=40.38 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=65.2
Q ss_pred chhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGL 70 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~ 70 (106)
-|-|.+.++..++|++..+ +.+.+++....+.-.+..+...+.++|+..||.|+.+. .......+.+..
T Consensus 215 KWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe 294 (359)
T KOG0085|consen 215 KWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcc
Confidence 3777888887777776553 44566666666667777777788999999999997542 111122222211
Q ss_pred C-------------------CcC---CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 71 E-------------------NLK---DRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 71 ~-------------------~~~---~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
. .++ ...+....++|.+.+|+.-+|..+.+.+.
T Consensus 295 ~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiL 349 (359)
T KOG0085|consen 295 FDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 349 (359)
T ss_pred cCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHH
Confidence 0 011 12234567788999999988887776554
No 320
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.61 E-value=0.027 Score=33.67 Aligned_cols=92 Identities=12% Similarity=0.141 Sum_probs=49.9
Q ss_pred hccCCeEEEEEECCCcchHHH--HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHH--------HHHhCCCCcCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGI--SKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV--------HRALGLENLKDR 76 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--------~~~~~~~~~~~~ 76 (106)
..+.|++++|++..+ .+-.+ ....+.+.+... .-.++++++|+.|.......++. ...... + ..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~--c-~~ 154 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK--C-GG 154 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH--h-CC
Confidence 467899999999876 23222 222232322210 12688999999996543222211 111110 0 01
Q ss_pred ceEEEEc---cccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKT---SAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~---sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+..|.- ++..+.++.++++.+.+.+.+
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1222221 356788899999999888764
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.59 E-value=0.029 Score=34.91 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=32.5
Q ss_pred hhhhhccC-CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNT-DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
...|+++. +.+++|+|++....-.+... +.+.+.. .+++.++|.||.|..+.
T Consensus 155 v~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld~---~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 155 IKQFISKEECLILAVTPANVDLANSDALK-LAKEVDP---QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHHH---cCCcEEEEEECCCCCCc
Confidence 35677754 58999999865333222222 2222222 56899999999997653
No 322
>KOG0099|consensus
Probab=96.56 E-value=0.0083 Score=37.96 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=37.5
Q ss_pred chhhhhccCCeEEEEEECCCc----------chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDR----------DRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
-|-..+.++.++|||+.+++- +...+....+...-++..+....+|+..||.|+.
T Consensus 218 KWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 218 KWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred hHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 488889999999999998732 1233333333333344444568999999999974
No 323
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.48 E-value=0.0056 Score=40.72 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHH-HHHHHHHHH
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLND-SMDWLSNAL 102 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~-~~~~l~~~~ 102 (106)
..+|+++|+||.|..... ..+.+.... ....++.+||+.+.++.+ +.+.+.+.+
T Consensus 216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 469999999999964321 112222211 234689999999999988 566655543
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.42 E-value=0.029 Score=37.45 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCCeEEEEeeCCCCCCcCCHH----HHHHHhC---CC-----------------CcCCCceEEEEccccCCCChHHHHHH
Q psy12794 42 RDAILVILANKQDMKNCMSVA----EVHRALG---LE-----------------NLKDRTFQIFKTSAKEGEGLNDSMDW 97 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~----~~~~~~~---~~-----------------~~~~~~~~~~~~sa~~~~~v~~~~~~ 97 (106)
.+.|++++.||+|+....... ++...+. .. .....-.|+|.+|+.+|.|++-+.+.
T Consensus 254 ~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 254 MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 368999999999986542222 2222221 11 00112368999999999998655444
Q ss_pred H
Q psy12794 98 L 98 (106)
Q Consensus 98 l 98 (106)
+
T Consensus 334 f 334 (527)
T COG5258 334 F 334 (527)
T ss_pred H
Confidence 3
No 325
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.38 E-value=0.016 Score=33.56 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=31.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
++..|++.+|++++|.++++..+-.+.. .+.+.... ....+++|.||+
T Consensus 121 ~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 121 ITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred HHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 4678899999999999998754433333 34344333 334588889984
No 326
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.27 E-value=0.01 Score=42.41 Aligned_cols=48 Identities=19% Similarity=0.062 Sum_probs=31.3
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
..+++.+|++++|+|+.+........ .+.. ... .+.|.++++||+|..
T Consensus 104 ~~al~~aD~~llVvda~~g~~~~t~~-~~~~-~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 104 TRAMRAVDGAIVVVCAVEGVMPQTET-VLRQ-ALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred HHHHHhcCEEEEEEecCCCCCccHHH-HHHH-HHH---cCCCEEEEEEChhcc
Confidence 34688999999999997643222211 1222 212 356888999999975
No 327
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.066 Score=36.30 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=34.7
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALG 69 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~ 69 (106)
-+|.+++|+|+...-...-. +++.-+.+.+.|++-..||.|..... -.+++.+.++
T Consensus 104 AvDsAvMVIDaAKGiE~qT~-----KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 104 AVDSAVMVIDAAKGIEPQTL-----KLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred hhheeeEEEecccCccHHHH-----HHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhC
Confidence 47899999999754333222 12222223679999999999975432 2345555555
No 328
>PTZ00416 elongation factor 2; Provisional
Probab=96.12 E-value=0.013 Score=42.63 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=31.6
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.++.+|++++|+|+...-..... ..+.. ... .++|++++.||+|+.
T Consensus 112 al~~~D~ailVvda~~g~~~~t~-~~~~~-~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 112 ALRVTDGALVVVDCVEGVCVQTE-TVLRQ-ALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred HHhcCCeEEEEEECCCCcCccHH-HHHHH-HHH---cCCCEEEEEEChhhh
Confidence 46789999999999865333322 22323 222 358999999999975
No 329
>KOG0466|consensus
Probab=96.09 E-value=0.014 Score=37.75 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=41.8
Q ss_pred CeEEEEeeCCCCCCcC----CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 44 AILVILANKQDMKNCM----SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 44 ~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+.++++-||+|+.... ..+++..++... ...+.+++.+||.-+.|++.+.+++++.+.
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t--~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGT--VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhcc--ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 6899999999986532 122333333311 234569999999999999999999988764
No 330
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.07 E-value=0.02 Score=36.35 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=26.9
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.+|+++++++.+... ....+..+.+.+.. ++|+++|+||+|+..
T Consensus 114 rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l~ 157 (276)
T cd01850 114 RVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTLT 157 (276)
T ss_pred ceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence 367888888876422 22222123333332 589999999999754
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.034 Score=35.89 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=45.4
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCC-eEEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCCceEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDA-ILVILANKQDMKNCMS-----VAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+.|+.|+|+.+++.+-+.-....+ +.+. .+. -++++.||+|+.+... ..++.+.+..+.+.....+++.
T Consensus 98 qmDgAILVVsA~dGpmPqTrEHiL--larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~ 172 (394)
T COG0050 98 QMDGAILVVAATDGPMPQTREHIL--LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIR 172 (394)
T ss_pred hcCccEEEEEcCCCCCCcchhhhh--hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceee
Confidence 469999999998765333222111 1112 344 5677889999876322 2355666655555555678888
Q ss_pred ccccC
Q psy12794 83 TSAKE 87 (106)
Q Consensus 83 ~sa~~ 87 (106)
-||..
T Consensus 173 gSal~ 177 (394)
T COG0050 173 GSALK 177 (394)
T ss_pred chhhh
Confidence 88774
No 332
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=95.72 E-value=0.027 Score=41.02 Aligned_cols=45 Identities=24% Similarity=0.167 Sum_probs=30.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.+.+|++++|+|+...-.... ...+..... .++|++++.||+|..
T Consensus 119 l~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 119 LRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred HhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 577999999999986533222 122322222 468999999999976
No 333
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=95.50 E-value=0.13 Score=32.61 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=30.2
Q ss_pred cCCeEEEEEECCC---c--c-h-----HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 9 NTDAIIYVVDSSD---R--D-R-----IGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 9 ~~d~~i~v~d~~~---~--~-~-----~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
-.+|+|+++|+.+ . . + -..+...+.++....+ .+.|+-+++||+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCccc
Confidence 4689999999862 1 1 1 1122233444433332 5799999999999765
No 334
>KOG3905|consensus
Probab=95.34 E-value=0.027 Score=36.78 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=38.5
Q ss_pred CCeEEEEeeCCCCCC----c-CCHH----HHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 43 DAILVILANKQDMKN----C-MSVA----EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~----~-~~~~----~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+.|++||++|+|... . .-.+ .+...++ .++-..+...+.+|+++..|++-+..+|...+
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 689999999999732 1 1111 1222221 11123456789999999999999888887543
No 335
>KOG0468|consensus
Probab=95.33 E-value=0.014 Score=41.34 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=31.4
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
.++.+|++++++|+...-.+.- .+.+.... ..+.|+++++||+|.
T Consensus 217 ~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 217 SLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred HhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHH
Confidence 4678999999999976544332 12222322 257899999999994
No 336
>KOG0447|consensus
Probab=95.21 E-value=0.34 Score=34.19 Aligned_cols=64 Identities=13% Similarity=0.283 Sum_probs=43.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALG 69 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~ 69 (106)
-.+|+.|..++|+|+.-.+ .+.-+.-+..+.......++-.|+|.+|.|+.+. .+.+.+.+.+.
T Consensus 442 sKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 442 SKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred HHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 3579999999999986432 2222223555666655667889999999998754 35556666654
No 337
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=95.03 E-value=0.25 Score=33.63 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=29.2
Q ss_pred cCCeEEEEE-ECC----CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 9 NTDAIIYVV-DSS----DRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 9 ~~d~~i~v~-d~~----~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
+++..++|. |.+ .+..+.+....+.+.++. .++|++++.||+|
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~d 191 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE---LNKPFIILLNSTH 191 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHh---cCCCEEEEEECcC
Confidence 788888887 654 123455555444444554 6899999999999
No 338
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=94.84 E-value=0.4 Score=28.49 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=55.7
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
...|.|+|++|.++..++.....-+...-.+. ..++-++++-|=.... -.....++.+... .+..+++.+.-.
T Consensus 63 prIDlIVFvinl~sk~SL~~ve~SL~~vd~~f-flGKVCfl~t~a~~~~~~sv~~~~V~kla~-----~y~~plL~~~le 136 (176)
T PF11111_consen 63 PRIDLIVFVINLHSKYSLQSVEASLSHVDPSF-FLGKVCFLATNAGRESHCSVHPNEVRKLAA-----TYNSPLLFADLE 136 (176)
T ss_pred ceeEEEEEEEecCCcccHHHHHHHHhhCChhh-hccceEEEEcCCCcccccccCHHHHHHHHH-----HhCCCEEEeecc
Confidence 35789999999999988887765443321121 1245555544433322 1344555665553 345678888888
Q ss_pred CCCChHHHHHHHHHHHh
Q psy12794 87 EGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~~~ 103 (106)
+.++...+-+.|.+.++
T Consensus 137 ~~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 137 NEEGRTSLAQRLLRMLQ 153 (176)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 88887777777776653
No 339
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.80 E-value=0.087 Score=37.92 Aligned_cols=47 Identities=23% Similarity=0.166 Sum_probs=30.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
..++.+|++++|+|+........ ...+..... .+.|.+++.||+|+.
T Consensus 106 ~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 106 RAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----cCCCeEEEEECchhh
Confidence 35678999999999876533221 112222222 245779999999975
No 340
>KOG1143|consensus
Probab=94.78 E-value=0.2 Score=33.62 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCC--------------
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLE-------------- 71 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~-------------- 71 (106)
.|...+|+.+...-.+.. ++..-+... -+.|++++.+|+|+.+....+ ++...+...
T Consensus 275 Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~dd 349 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWTT--REHLGLIAA---LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDD 349 (591)
T ss_pred CceEEEEEEcCCCCcccc--HHHHHHHHH---hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHH
Confidence 356777887765433221 112222222 478999999999987643322 222222211
Q ss_pred -------CcCCCceEEEEccccCCCChHHHHHHH
Q psy12794 72 -------NLKDRTFQIFKTSAKEGEGLNDSMDWL 98 (106)
Q Consensus 72 -------~~~~~~~~~~~~sa~~~~~v~~~~~~l 98 (106)
....+..++|.+|..+|+|+.-+...|
T Consensus 350 Av~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 350 AVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 112234689999999999987655443
No 341
>KOG2486|consensus
Probab=94.68 E-value=0.02 Score=36.49 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=45.9
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC------HHHHHHHh-CCC-CcCCCceEEEEc
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS------VAEVHRAL-GLE-NLKDRTFQIFKT 83 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~-~~~-~~~~~~~~~~~~ 83 (106)
-+++++|.+.+-...+.. ...++.+ .++|+.+|+||+|...... ...+...+ +.. ......++++.+
T Consensus 222 ~~FLLvd~sv~i~~~D~~--~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~ 296 (320)
T KOG2486|consen 222 RVFLLVDASVPIQPTDNP--EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYV 296 (320)
T ss_pred eeeeeeeccCCCCCCChH--HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceee
Confidence 356677776442222211 2233333 6899999999999643211 11111101 100 001223568889
Q ss_pred cccCCCChHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~ 100 (106)
|+.++.|++.+.-.+++
T Consensus 297 Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 297 SSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ecccccCceeeeeehhh
Confidence 99999999988765544
No 342
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.56 E-value=0.22 Score=32.47 Aligned_cols=68 Identities=24% Similarity=0.158 Sum_probs=39.3
Q ss_pred cCCeEEEEEECCCcchHHH-HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 9 NTDAIIYVVDSSDRDRIGI-SKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
..|+++-|+|+..-..... ......+.+.. .+ +++.||.|+.+..........+... ....+++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLVDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCCCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 3578999999875433222 33444444443 22 8889999997654444444444321 23346666665
No 343
>KOG2485|consensus
Probab=94.49 E-value=0.17 Score=32.84 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=36.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
-.+..|.+|=|=|+.-|-|-+.. .+.+++ ..+|-|+|.||+|+.+......+.+.+.
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~--~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNE--LFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred hcccccEEEEeeccccCCccccH--HHHHhc-----CCCceEEEEecccccCchhhhHHHHHHH
Confidence 35678888888888655432221 133332 3689999999999987545555555554
No 344
>KOG0460|consensus
Probab=94.48 E-value=0.18 Score=33.34 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=43.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCCceEEEEc
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-----VAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
+-|+.|+|+..++..-+.- ++.+ -+.++. .=..+++..||.|+.+... +-++++.+....+...+.|++.-
T Consensus 140 qMDGaILVVaatDG~MPQT-rEHl-LLArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~G 215 (449)
T KOG0460|consen 140 QMDGAILVVAATDGPMPQT-REHL-LLARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRG 215 (449)
T ss_pred ccCceEEEEEcCCCCCcch-HHHH-HHHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeec
Confidence 3589999999987643322 2212 122221 2267888999999874321 22445555444445556788876
Q ss_pred ccc
Q psy12794 84 SAK 86 (106)
Q Consensus 84 sa~ 86 (106)
||+
T Consensus 216 SAL 218 (449)
T KOG0460|consen 216 SAL 218 (449)
T ss_pred chh
Confidence 665
No 345
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.33 E-value=0.14 Score=32.00 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=30.3
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCC-CeEEEEeeCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRD-AILVILANKQDM 55 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~ 55 (106)
..+++|.++.|+|++.+ +..-.. .+.++... .+ +++.+|.||.|-
T Consensus 152 ~~~~vD~vivVvDpS~~-sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e 197 (255)
T COG3640 152 TIEGVDLVIVVVDPSYK-SLRTAE-RIKELAEE---LGIKRIFVVLNKVDE 197 (255)
T ss_pred cccCCCEEEEEeCCcHH-HHHHHH-HHHHHHHH---hCCceEEEEEeeccc
Confidence 35789999999998654 232222 23344444 34 899999999994
No 346
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.18 Score=36.20 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=36.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALG 69 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~ 69 (106)
..++-+|+++.|+|+...-....- ..|.. ... .+.|.+++.||+|..... ...++.+.++
T Consensus 95 rslrvlDgavvVvdaveGV~~QTE-tv~rq-a~~---~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 95 RSLRVLDGAVVVVDAVEGVEPQTE-TVWRQ-ADK---YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred HHHHhhcceEEEEECCCCeeecHH-HHHHH-Hhh---cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 456778999999999754322211 12222 222 578999999999976532 3344444444
No 347
>KOG1954|consensus
Probab=93.86 E-value=0.24 Score=33.15 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=34.7
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
|...||.|+++||+..-+-.++..+.+.. ++. .+-.+-||.||.|.. ...+....++
T Consensus 178 FaeR~D~IiLlfD~hKLDIsdEf~~vi~a-LkG---~EdkiRVVLNKADqV---dtqqLmRVyG 234 (532)
T KOG1954|consen 178 FAERVDRIILLFDAHKLDISDEFKRVIDA-LKG---HEDKIRVVLNKADQV---DTQQLMRVYG 234 (532)
T ss_pred HHHhccEEEEEechhhccccHHHHHHHHH-hhC---CcceeEEEecccccc---CHHHHHHHHH
Confidence 45689999999998754333333322322 333 345778899999954 3444544444
No 348
>KOG0463|consensus
Probab=93.62 E-value=0.13 Score=34.47 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCeEEEEeeCCCCCCcCCHHH----HHHHhCCC---------------------CcCCCceEEEEccccCCCChHHHHHH
Q psy12794 43 DAILVILANKQDMKNCMSVAE----VHRALGLE---------------------NLKDRTFQIFKTSAKEGEGLNDSMDW 97 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~sa~~~~~v~~~~~~ 97 (106)
.+|+++|.+|+|+....-..+ +...+... +....-+++|.+|..+|+|+.-+...
T Consensus 273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 689999999999865322222 22222211 01123378999999999998876655
Q ss_pred H
Q psy12794 98 L 98 (106)
Q Consensus 98 l 98 (106)
|
T Consensus 353 L 353 (641)
T KOG0463|consen 353 L 353 (641)
T ss_pred H
Confidence 4
No 349
>KOG3886|consensus
Probab=93.24 E-value=0.79 Score=28.87 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=33.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHH---HHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISK---EELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
+.+++.++++++||+.+.+--.+.+ .-++.++++ ..+..++....|.|+..
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcc
Confidence 4578999999999998664322222 112333333 24567888999999864
No 350
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=92.89 E-value=0.2 Score=34.38 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCeEEEEeeCCCCCCc----C-----CHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 43 DAILVILANKQDMKNC----M-----SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+.|++||++|.|.... . ..+-+.+.++ ..+-.++...+.+|+++..+++-+...|.-.+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 4799999999995321 1 1122333332 11134567888999999999998888766544
No 351
>KOG0448|consensus
Probab=92.41 E-value=0.7 Score=33.19 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=32.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
+...+..++|++|+|....+.-+-.+.. ++... .. .++.++++-||+|...
T Consensus 225 wid~~cldaDVfVlV~NaEntlt~sek~-Ff~~v-s~---~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 225 WIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKV-SE---EKPNIFILNNKWDASA 275 (749)
T ss_pred HHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHh-hc---cCCcEEEEechhhhhc
Confidence 3466788999999999886543333322 22222 22 2567888889999754
No 352
>COG3596 Predicted GTPase [General function prediction only]
Probab=92.32 E-value=1.3 Score=28.53 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---------CHHHHHHHhCCCC--
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---------SVAEVHRALGLEN-- 72 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---------~~~~~~~~~~~~~-- 72 (106)
..|....|.++++.+..++.--.+.+ ++.+.... ..+++++++.|.+|..... ....+.+......
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDED-FLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHH-HHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 34667789999999998764221111 23333332 1358999999999964320 1111111111000
Q ss_pred ---cCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 73 ---LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 73 ---~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+-..-.+++..|+..+-|++++...+++.+.
T Consensus 189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 0001236777788999999999999988765
No 353
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.37 E-value=0.34 Score=28.10 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=22.5
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
...+++++++|+.+...+.+-...+.+.+.. -=+++.||+|+
T Consensus 117 ~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 117 YLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred eeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 3578899999975432211111223333332 22668999885
No 354
>KOG1487|consensus
Probab=91.15 E-value=0.19 Score=32.10 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=47.6
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
.|-.++..+.+=+|++. ++ +...+... ..-.|.+.+.||+|-. +.++..=. ......+.+|
T Consensus 202 eyR~hsAdi~Lr~DaT~----Dd----LIdvVegn-r~yVp~iyvLNkIdsI---SiEELdii-------~~iphavpIS 262 (358)
T KOG1487|consen 202 EYRIHSADIALRFDATA----DD----LIDVVEGN-RIYVPCIYVLNKIDSI---SIEELDII-------YTIPHAVPIS 262 (358)
T ss_pred HhhhcchheeeecCcch----hh----hhhhhccC-ceeeeeeeeeccccee---eeecccee-------eeccceeecc
Confidence 34445555666666643 22 22333331 1247999999999932 22221111 1234678999
Q ss_pred ccCCCChHHHHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~ 102 (106)
|..+.|.+++.+.+.+.+
T Consensus 263 A~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 263 AHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred cccccchHHHHHHHhhcc
Confidence 999999999998877654
No 355
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.02 E-value=1.9 Score=27.61 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=33.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.+.++|.++.|..+| +..+.+..+ ..+..++ .+.|..+|.||.+..
T Consensus 182 sl~~aD~ai~VTEPT-p~glhD~kr-~~el~~~---f~ip~~iViNr~~~g 227 (284)
T COG1149 182 SLKGADLAILVTEPT-PFGLHDLKR-ALELVEH---FGIPTGIVINRYNLG 227 (284)
T ss_pred hhccCCEEEEEecCC-ccchhHHHH-HHHHHHH---hCCceEEEEecCCCC
Confidence 467899999998876 335555554 3445555 578999999999643
No 356
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=90.57 E-value=0.41 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
-.+++..||+++.|++.+++.+...+.
T Consensus 240 ~~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 240 LVPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 468999999999999999999988764
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=89.83 E-value=1.5 Score=33.66 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=32.1
Q ss_pred ccCCeEEEEEECCCcc--h-------HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 8 SNTDAIIYVVDSSDRD--R-------IGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~--~-------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
+-.+|+|+++|+.+-- + -..++..+.++....+ ...|+-+++||+|+..
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 4589999999986321 1 1233334445444433 4789999999999764
No 358
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=89.39 E-value=2.6 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=31.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.+..+|.+++++.++.. +.......+. .++. .+.|+.++.||+|...
T Consensus 111 ~l~~aD~vliv~~~~~~-~~~~~~~~~~-~l~~---~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 111 SLTGADAALLVTEPTPS-GLHDLERAVE-LVRH---FGIPVGVVINKYDLND 157 (179)
T ss_pred HHHcCCEEEEEecCCcc-cHHHHHHHHH-HHHH---cCCCEEEEEeCCCCCc
Confidence 45789999999988743 4555444343 3333 3467889999999643
No 359
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=89.11 E-value=3.5 Score=27.56 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=45.3
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE 71 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 71 (106)
..++.++|-+++|++.+=+ +.....+.+. .++.......+..+++||...+...+..++.+.++..
T Consensus 234 ~~vL~~Sd~iviv~e~sl~-slR~ak~lld-~l~~~r~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~ 299 (366)
T COG4963 234 RQVLSGSDEIVIVAEPSLA-SLRNAKELLD-ELKRLRPNDPKPILVLNRVGVPKRPEPSDLEEILGIE 299 (366)
T ss_pred HHHHhcCCeEEEEecccHH-HHHHHHHHHH-HHHHhCCCCCCceEEeeecCCCCCCCHHHHHHHhCCc
Confidence 4578899999999987633 4444444343 3444444678889999999977655666777777654
No 360
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=88.80 E-value=0.56 Score=27.70 Aligned_cols=45 Identities=31% Similarity=0.267 Sum_probs=27.9
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM 59 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 59 (106)
..+.+|.|+|+.+-.........+.+.+.. -=+++.||+|+.+..
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDE 157 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChh
Confidence 457899999996643333444445555544 228889999986543
No 361
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=88.14 E-value=1.1 Score=29.80 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=26.3
Q ss_pred CCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 42 RDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
..+|+++++||.|...... ...+.+... ..+.+++.+||.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~-----~~~~~vV~~sA~ 247 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAA-----KENAEVVPVSAA 247 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhh-----hcCCcEEEeeHH
Confidence 5799999999999764322 334444442 233568888887
No 362
>PTZ00258 GTP-binding protein; Provisional
Probab=87.77 E-value=0.76 Score=30.87 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=25.8
Q ss_pred CCCeEEEEeeCC--CCC-C-cCCHHHHHHHhCCCCcCCCceEEEEccccCC
Q psy12794 42 RDAILVILANKQ--DMK-N-CMSVAEVHRALGLENLKDRTFQIFKTSAKEG 88 (106)
Q Consensus 42 ~~~p~ilv~nK~--D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 88 (106)
..+|+++++|+. |+. . .....++.+.... ..+.+++.+||+..
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~----~~~~~~v~~sa~~E 265 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGE----KGGGPIIPYSAEFE 265 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHh----cCCCeEEEeeHHHH
Confidence 469999999999 752 2 1223344444431 11357888888644
No 363
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=87.54 E-value=0.99 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.5
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.-+|++..||.++.|+..+++.+...+.
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 3479999999999999999999988764
No 364
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=85.91 E-value=0.79 Score=28.06 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=35.9
Q ss_pred chhhhhccCCeEEEE-EECCCc-----chHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 2 YWRCYYSNTDAIIYV-VDSSDR-----DRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v-~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
+|..+|++++...++ .+..+. -.+.++..-+..++++.. .++|+||++.=.
T Consensus 48 vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQ 104 (207)
T PF11288_consen 48 VFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQ 104 (207)
T ss_pred cccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCh
Confidence 577789999988887 333221 136777777888887754 568999998754
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=85.78 E-value=6.4 Score=26.05 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-HHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-AEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
+.|..++|.|++.... .......+... . ..--+++||.|....... -.+.... +.|+..++ +
T Consensus 252 ~pd~~iLVl~a~~g~d---~~~~a~~f~~~---~-~~~giIlTKlD~~~~~G~~ls~~~~~--------~~Pi~~i~--~ 314 (336)
T PRK14974 252 KPDLVIFVGDALAGND---AVEQAREFNEA---V-GIDGVILTKVDADAKGGAALSIAYVI--------GKPILFLG--V 314 (336)
T ss_pred CCceEEEeeccccchh---HHHHHHHHHhc---C-CCCEEEEeeecCCCCccHHHHHHHHH--------CcCEEEEe--C
Confidence 4677788888765322 11112222221 1 245677999996543221 1222222 33555555 7
Q ss_pred CCChHHHHH
Q psy12794 88 GEGLNDSMD 96 (106)
Q Consensus 88 ~~~v~~~~~ 96 (106)
|++++++..
T Consensus 315 Gq~v~Dl~~ 323 (336)
T PRK14974 315 GQGYDDLIP 323 (336)
T ss_pred CCChhhccc
Confidence 899987754
No 366
>KOG0465|consensus
Probab=85.72 E-value=6.4 Score=28.39 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=30.4
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
..++-.|++|+++|....-...... ..+.+.. .++|.+...||.|..+.
T Consensus 123 RALrVlDGaVlvl~aV~GVqsQt~t--V~rQ~~r---y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 123 RALRVLDGAVLVLDAVAGVESQTET--VWRQMKR---YNVPRICFINKMDRMGA 171 (721)
T ss_pred hhhhhccCeEEEEEcccceehhhHH--HHHHHHh---cCCCeEEEEehhhhcCC
Confidence 3456779999999886432221111 2222222 57999999999997543
No 367
>KOG1486|consensus
Probab=85.57 E-value=4.4 Score=26.05 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=36.5
Q ss_pred CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+++.|.||+| +.+.+++....+.+ ..+-+|..-.-|++.+.+.+.+.+.
T Consensus 239 ~~ClYvYnKID---~vs~eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKID---QVSIEEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccc---eecHHHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhc
Confidence 69999999999 45667777766532 2344566677899999998887653
No 368
>KOG0459|consensus
Probab=85.05 E-value=1.3 Score=30.13 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCCeEEEEeeCCCCCCcC----CHHH----HHHHhCCCCc-CCCceEEEEccccCCCChHHHHH
Q psy12794 42 RDAILVILANKQDMKNCM----SVAE----VHRALGLENL-KDRTFQIFKTSAKEGEGLNDSMD 96 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~----~~~~----~~~~~~~~~~-~~~~~~~~~~sa~~~~~v~~~~~ 96 (106)
.-+..+++.||+|.+.-. ...+ +...+..... ......++.+|..+|.++.+..+
T Consensus 216 gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 216 GVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 347889999999986521 1222 2222221111 22456899999999999886543
No 369
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=84.99 E-value=0.58 Score=25.67 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=13.5
Q ss_pred EeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 49 LANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 49 v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
++||+|++.. .....+.+.+. ...++.|||.
T Consensus 1 AaNK~D~~~a~~ni~kl~~~~~-------~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKEKYP-------DEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHHHHT-------T-EEEEE-HH
T ss_pred CCccccccccHhHHHHHHHhCC-------CCceeeccHH
Confidence 5799997432 22334444332 2355666654
No 370
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=81.77 E-value=15 Score=26.11 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE--EccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF--KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++|+.||.|.........+.+... ..++++. ..-++-|+|--++-+.+.+.+.
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~-----e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCE-----ELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHH-----HcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 5799999999999643323333444442 2233333 4445556676666666655443
No 371
>KOG0467|consensus
Probab=81.31 E-value=4 Score=30.08 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=27.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
..-+-+|+++.++|+...-...... .+..... .+..+++|.||+|
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~~-vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHHH-HHHHHHH----ccCceEEEEehhh
Confidence 3456789999999997542222111 1211111 3456788999999
No 372
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.13 E-value=6.3 Score=20.81 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=14.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHHH
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGI 27 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~ 27 (106)
++.-+.++|.+|++.|.-+-.....
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHH
Confidence 3444566777777777765444433
No 373
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=80.83 E-value=14 Score=25.02 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=42.3
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC---------CCcCCHHHH----HH----HhC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM---------KNCMSVAEV----HR----ALG 69 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~---------~~~~~~~~~----~~----~~~ 69 (106)
+..-|.+|++.+. .|.+.+.++...++. .++|+..|.+|+|. +.....+++ ++ .+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 3456777776643 455555445555554 57999999999994 111122222 22 221
Q ss_pred CCCcCCCceEEEEccccCCC--ChHHHHHHHHHHHh
Q psy12794 70 LENLKDRTFQIFKTSAKEGE--GLNDSMDWLSNALQ 103 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~--~v~~~~~~l~~~~~ 103 (106)
.. .-...++|.+|..+-. +...+.+.|.+.+.
T Consensus 185 k~--gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KA--GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CT--T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred Hc--CCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 11 1134578888887644 45667777776554
No 374
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=80.22 E-value=5.7 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=14.9
Q ss_pred EEEEeeCCCCCCcCCHHHHHHHh
Q psy12794 46 LVILANKQDMKNCMSVAEVHRAL 68 (106)
Q Consensus 46 ~ilv~nK~D~~~~~~~~~~~~~~ 68 (106)
=++++||+|+.+......+.+.+
T Consensus 176 D~IvlnK~Dl~~~~~l~~~~~~l 198 (341)
T TIGR02475 176 DLVILNKADLLDAAGLARVRAEI 198 (341)
T ss_pred CEEEEeccccCCHHHHHHHHHHH
Confidence 38889999987654444444443
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.86 E-value=2.9 Score=24.61 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred CceEEEEccccCCCChHHHHHHHHH
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
.+++++.+|+++++|++++.+.+..
T Consensus 11 ~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 11 LGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp TTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3568999999999999999887754
No 376
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=77.02 E-value=8.5 Score=21.64 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCeEEEEeeCCCCC----Cc-------CCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 43 DAILVILANKQDMK----NC-------MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 43 ~~p~ilv~nK~D~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
--.++|++-|.+-- +. ....++.+.++ +.+..+.++.+||.+++...+.+....+.+.+
T Consensus 54 aDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elg---ie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~ 123 (132)
T COG1908 54 ADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELG---IEPERVRVLWISAAEGEKFAETINEFVERIKE 123 (132)
T ss_pred CCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhC---CCcceEEEEEEehhhHHHHHHHHHHHHHHHHH
Confidence 34788888887731 11 01123333443 35677899999999999998888887777654
No 377
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=75.05 E-value=20 Score=25.02 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=24.5
Q ss_pred eEEEEEECC----CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 12 AIIYVVDSS----DRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 12 ~~i~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
|++.-.|-+ .+..|.+..+...+-++. .++|++++.|-.+
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~---igKPFvillNs~~ 191 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKE---IGKPFVILLNSTK 191 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHH---hCCCEEEEEeCCC
Confidence 455544443 233455555444444444 6899999999987
No 378
>KOG4530|consensus
Probab=74.27 E-value=12 Score=22.31 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=29.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
-|+.-+..+|+++|+-.--+..-..-+.+-+..+... ..++|.++|-.==
T Consensus 79 aw~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyhe--W~gKPalivSyGG 128 (199)
T KOG4530|consen 79 AWRQKILEADSIVFVTPQYNFGYPAPLKNALDWLYHE--WAGKPALIVSYGG 128 (199)
T ss_pred HHHHHHhhcceEEEecccccCCCchHHHHHHHHhhhh--hcCCceEEEEecC
Confidence 3888889999999996543332222233333333222 4678988876543
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=74.18 E-value=20 Score=22.92 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEEEccccCC
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIFKTSAKEG 88 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 88 (106)
+|..++|+|++.. .+... ....+.+. . .+.-+++||.|-..... .-.+.... +.|+..++ +|
T Consensus 191 ~~~~~LVl~a~~~--~~~~~-~~~~f~~~---~-~~~g~IlTKlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~G 253 (272)
T TIGR00064 191 PDEVLLVLDATTG--QNALE-QAKVFNEA---V-GLTGIILTKLDGTAKGGIILSIAYEL--------KLPIKFIG--VG 253 (272)
T ss_pred CceEEEEEECCCC--HHHHH-HHHHHHhh---C-CCCEEEEEccCCCCCccHHHHHHHHH--------CcCEEEEe--CC
Confidence 7889999999743 32222 22333322 1 25578899999654332 12233333 24555555 78
Q ss_pred CChHHHHHH
Q psy12794 89 EGLNDSMDW 97 (106)
Q Consensus 89 ~~v~~~~~~ 97 (106)
++++++...
T Consensus 254 q~~~dl~~~ 262 (272)
T TIGR00064 254 EKIDDLAPF 262 (272)
T ss_pred CChHhCccC
Confidence 888776543
No 380
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=74.14 E-value=9.9 Score=24.44 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=26.1
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.+|++++.++++.. +....+-...+.+. ..+++|-|..|.|...
T Consensus 113 RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccC
Confidence 46899999998753 22222322333333 3578999999999654
No 381
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=73.00 E-value=8.1 Score=25.94 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=24.1
Q ss_pred CCCeEEEEeeCCCC--C-CcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 42 RDAILVILANKQDM--K-NCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 42 ~~~p~ilv~nK~D~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
..+|+++++|+.|. . ......++.+.... .+.+++.+||.
T Consensus 198 t~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~-----~~~~~i~~sa~ 240 (364)
T PRK09601 198 TAKPVLYVANVDEDDLADGNPYVKKVREIAAK-----EGAEVVVICAK 240 (364)
T ss_pred ccCCeEEEEECCccccccccHHHHHHHHHHHH-----cCCeEEEEEHH
Confidence 36999999999984 1 11123344444321 24567888875
No 382
>KOG1249|consensus
Probab=71.87 E-value=8.2 Score=27.31 Aligned_cols=84 Identities=19% Similarity=0.034 Sum_probs=45.5
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHh---CCCCc------C-----CC
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRAL---GLENL------K-----DR 76 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~------~-----~~ 76 (106)
-.+..|+|.++..- .+...+.... ..+..++.+||+|+.......-..... ..... + ..
T Consensus 112 ~~~~~vvd~~d~p~--~i~p~~~~~v-----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~ 184 (572)
T KOG1249|consen 112 ALARKVVDLSDEPC--SIDPLLTNDV-----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFD 184 (572)
T ss_pred cceEEeeecccCcc--ccccchhhcc-----cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccc
Confidence 45667777765332 2222222221 234479999999986532211111111 11100 0 01
Q ss_pred ceEEEEccccCCCChHHHHHHHHHH
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
.-....+|++++.|++++.-.+.+.
T Consensus 185 f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 185 FDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred hhhhhhhhhhhcccHHHHHHHhhhe
Confidence 1246789999999999998887764
No 383
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=71.77 E-value=16 Score=20.59 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=29.7
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
..+..+|.++++.+++.. +.......+..+... ....++.++.|+++.
T Consensus 62 ~~l~~aD~vviv~~~~~~-s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 62 DFFLAADEVIVVTTPEPT-SITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHhCCeEEEEcCCChh-HHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 457889999999987633 444433333333222 134577899999973
No 384
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=71.61 E-value=8.1 Score=25.31 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=23.0
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.++++.|+|+.+-....+........+.. -=+++.||+|+.+
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 47899999986422111111112222222 2378899999764
No 385
>KOG4273|consensus
Probab=66.78 E-value=5.6 Score=25.51 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=27.4
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCC-CeEEEEeeCCCCC
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRD-AILVILANKQDMK 56 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~ 56 (106)
.+++++||.+.......+..|+ .+..... --.+-++||.|..
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl----~htdinsfdillcignkvdrv 122 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWL----PHTDINSFDILLCIGNKVDRV 122 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhc----cccccccchhheecccccccc
Confidence 4689999999887777766544 3322222 2345679999964
No 386
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=66.00 E-value=35 Score=22.45 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=39.0
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
..+..++|.|++.. .+.+.+ ...+... -.+.-++.||.|-..... .-.+.... +.|+..++ +
T Consensus 232 ~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlTKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~ 294 (318)
T PRK10416 232 APHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILTKLDGTAKGGVVFAIADEL--------GIPIKFIG--V 294 (318)
T ss_pred CCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEECCCCCCCccHHHHHHHHH--------CCCEEEEe--C
Confidence 46778899998753 222222 2233221 135578899999543322 12223222 34666666 7
Q ss_pred CCChHHHHH
Q psy12794 88 GEGLNDSMD 96 (106)
Q Consensus 88 ~~~v~~~~~ 96 (106)
|++++++..
T Consensus 295 Gq~~~Dl~~ 303 (318)
T PRK10416 295 GEGIDDLQP 303 (318)
T ss_pred CCChhhCcc
Confidence 888877643
No 387
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=62.30 E-value=23 Score=20.75 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=28.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
.-+..+|++|+....-+..-...+..++... ....+.++|++++.+=
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~-~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLV-DPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhc-CHhHhCCCEEEEEEec
Confidence 3467899999987664433333334444332 2223467999888774
No 388
>PRK13556 azoreductase; Provisional
Probab=61.73 E-value=34 Score=20.76 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=31.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc------------CCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE------------ELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~p~ilv~nK 52 (106)
-++.||.+|+.+..-+-.-+..+..|+....... .+.+++++++.+-
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~ts 144 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeC
Confidence 3678999999998765544555566666665421 1456888887663
No 389
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=60.64 E-value=29 Score=19.60 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=27.9
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHh--cCcCCCCCeEEEEeeC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAML--KEEELRDAILVILANK 52 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ilv~nK 52 (106)
...+..+|++|+....-...-......++..+. ......++|+.++.+=
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 345678999999887654333333333343332 1334467888877544
No 390
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=60.05 E-value=27 Score=22.04 Aligned_cols=46 Identities=7% Similarity=-0.033 Sum_probs=25.1
Q ss_pred cCCeEEEEEECCCcc-hHH--HHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 9 NTDAIIYVVDSSDRD-RIG--ISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
..|+++++..++... +.. .+...+.+.+... .-.++++|.||+|..
T Consensus 114 ~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~ 162 (249)
T cd01853 114 TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASS 162 (249)
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccC
Confidence 567888887665332 222 2222233322210 115799999999963
No 391
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=59.53 E-value=49 Score=21.91 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=25.4
Q ss_pred cCCeEEEEEECCCc--chH-HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 9 NTDAIIYVVDSSDR--DRI-GISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 9 ~~d~~i~v~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
..|+++||..++.. ... ..+...+.+.+... .-.+.++++|+.|..
T Consensus 118 g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 118 TIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred CCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 58899999665432 111 12222233333211 125789999999954
No 392
>PRK13660 hypothetical protein; Provisional
Probab=59.01 E-value=38 Score=20.48 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=8.0
Q ss_pred hccCCeEEEEEECCC
Q psy12794 7 YSNTDAIIYVVDSSD 21 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~ 21 (106)
+.++|++|.++|...
T Consensus 127 v~~sd~~i~~YD~e~ 141 (182)
T PRK13660 127 LEHTDGALLVYDEEN 141 (182)
T ss_pred HHccCeEEEEEcCCC
Confidence 345555566665443
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=58.81 E-value=33 Score=19.67 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=22.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
.++..+|.++++..++-.+.+.-+ .... ...-=+++.||+|
T Consensus 108 ~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 108 DIASMADTTVVVMAPGAGDDIQAI---KAGI------MEIADIVVVNKAD 148 (148)
T ss_pred hHHHhCCEEEEEECCCchhHHHHh---hhhH------hhhcCEEEEeCCC
Confidence 356778888888776422222111 1111 1233477889987
No 394
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=58.77 E-value=11 Score=18.87 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.9
Q ss_pred chhhhhccCCeEEEEEE
Q psy12794 2 YWRCYYSNTDAIIYVVD 18 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d 18 (106)
||++|=.+-.|+.+.+|
T Consensus 1 mW~~Y~~~~~Gv~i~f~ 17 (90)
T PF11185_consen 1 MWRHYADNHKGVCIGFD 17 (90)
T ss_pred ChHHhCCCCceEEEEEc
Confidence 79999999999999997
No 395
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=57.50 E-value=17 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.5
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.-++++..||.++.|+..+++.+...+.
T Consensus 252 ~~~PV~~gSa~~~~Gv~~LLd~I~~~lP 279 (689)
T TIGR00484 252 EFFPVLCGSAFKNKGVQLLLDAVVDYLP 279 (689)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHCC
Confidence 3468999999999999999999998775
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.45 E-value=61 Score=23.37 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=22.5
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
..++|++.+. +..++...+..+.. ..+.-+++||.|...
T Consensus 460 a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 460 TSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 4566777653 34444444433322 246678999999643
No 397
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=56.50 E-value=31 Score=18.62 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=25.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
.+++||++|.++|...+++-.-.. +--.. . .++|++++.+....
T Consensus 58 ~i~~~D~via~l~~~~~d~Gt~~E--lG~A~-a---lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 58 GIRECDIVIANLDGFRPDSGTAFE--LGYAY-A---LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHSSEEEEEECSSS--HHHHHH--HHHHH-H---TTSEEEEEECCCCT
T ss_pred HHHHCCEEEEECCCCCCCCcHHHH--HHHHH-H---CCCEEEEEEcCCcc
Confidence 467899999999974432222111 11111 1 46899998887663
No 398
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=56.48 E-value=31 Score=20.20 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=28.1
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
..-+..+|++|++...-+..-...+..++..+ ....+.++|+.++.+-
T Consensus 60 ~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~-~~~~l~~K~v~~~~~g 107 (171)
T TIGR03567 60 TAQVAQADGVVVATPVYKASYSGVLKALLDLL-PQRALRGKVVLPIATG 107 (171)
T ss_pred HHHHHHCCEEEEECCcccCCCCHHHHHHHHhC-ChhhhCCCEEEEEEcC
Confidence 34467899999987664433233333344332 2223467888887765
No 399
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=55.29 E-value=34 Score=20.61 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=27.0
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
.-++.+|++|+....=+..-.--+..++..+ ....+.++|+.++.+=
T Consensus 62 ~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l-~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 62 EQLAQADGLIVATPVYKASFSGALKTLLDLL-PERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHCCEEEEECCccCCCCCHHHHHHHHhC-ChhhhCCCEEEEEEec
Confidence 4577899999987654332222222333222 2223467899988885
No 400
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=55.23 E-value=31 Score=18.37 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=22.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCC-CCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELR-DAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ilv~nK 52 (106)
.+..+|.++++.+++.. +.......+..+ ...... ...+.++.|+
T Consensus 61 ~l~~aD~vlvvv~~~~~-s~~~~~~~~~~l-~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 61 ALDQADRVFLVTQQDLP-SIRNAKRLLELL-RVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHcCeEEEEecCChH-HHHHHHHHHHHH-HHcCCCCcCceEEEecC
Confidence 45677888887776532 344444333222 222222 2345566654
No 401
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=54.69 E-value=10 Score=24.32 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=22.1
Q ss_pred CCeEEEEeeCCC--CCCcC-CHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 43 DAILVILANKQD--MKNCM-SVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 43 ~~p~ilv~nK~D--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
.+|+++++|+.| ..... ....+..... ..+.+++.+||.
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~-----~~~~~~i~~sa~ 236 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNNKVLKVREIAA-----KEGAEVIPISAK 236 (274)
T ss_pred cCCceeecccCHHHhccccHHHHHHHHHHh-----cCCCeEEEeeHH
Confidence 489999999998 32111 1112222221 234578888886
No 402
>KOG2743|consensus
Probab=54.07 E-value=22 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCcCCHHHHHHH
Q psy12794 47 VILANKQDMKNCMSVAEVHRA 67 (106)
Q Consensus 47 ilv~nK~D~~~~~~~~~~~~~ 67 (106)
.++.||.|+.+.....++.+.
T Consensus 215 ~II~NKtDli~~e~~~~l~q~ 235 (391)
T KOG2743|consen 215 RIIMNKTDLVSEEEVKKLRQR 235 (391)
T ss_pred eeeeccccccCHHHHHHHHHH
Confidence 567899999765444444443
No 403
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=53.87 E-value=38 Score=22.56 Aligned_cols=50 Identities=12% Similarity=0.323 Sum_probs=29.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
+...||.|| |+|+ |.--++++..+++ .++..+|++|..- ....++-..+.
T Consensus 132 Ll~eADIVV-----TNPP-FSLFrEyv~~Li~----~~KkFlIIGN~Na----iTYkeiFplik 181 (336)
T PF13651_consen 132 LLKEADIVV-----TNPP-FSLFREYVAQLIE----YDKKFLIIGNINA----ITYKEIFPLIK 181 (336)
T ss_pred HHhcCCEEE-----eCCC-cHHHHHHHHHHHH----hCCCEEEEecccc----ccHHHHHHHHh
Confidence 456788776 4553 3333334444444 3789999999964 34555555554
No 404
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=52.34 E-value=29 Score=20.73 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
|..-+..+|++|++...-+. ++.....-..+++......++|+.++++---
T Consensus 61 ~~~~i~~aD~li~~tPeYn~-s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g 111 (184)
T COG0431 61 LREAIAAADGLIIATPEYNG-SYPGALKNAIDWLSREALGGKPVLLLGTSGG 111 (184)
T ss_pred HHHHHHhCCEEEEECCccCC-CCCHHHHHHHHhCCHhHhCCCcEEEEecCCC
Confidence 55667889999998765443 2222211122333333456899998888765
No 405
>KOG3887|consensus
Probab=52.02 E-value=64 Score=20.95 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=52.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhc--CcCCCCCeEEEEeeCCCCCCcCC----HHHHHHH----hCCCCcCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLK--EEELRDAILVILANKQDMKNCMS----VAEVHRA----LGLENLKD 75 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~----~~~~~~~~ 75 (106)
.++++.+++||+|+.+ .+.+....+..... ..-..+..+=+...|.|-.+... ...+.+. +.-..+..
T Consensus 98 iF~~~gALifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~ 175 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK 175 (347)
T ss_pred HHhccCeEEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence 4788999999999854 33333222222111 11124577888899999432211 1111111 11111122
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
-.+.+..+|. ..-.+-+.|..+++.+..+
T Consensus 176 v~vsf~LTSI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 176 VQVSFYLTSI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ceEEEEEeee-cchHHHHHHHHHHHHHhhh
Confidence 2345666554 4567888888888877655
No 406
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.47 E-value=1.2e+02 Score=24.16 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=31.3
Q ss_pred hccCCeEEEEEECCCcc--h-------HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRD--R-------IGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~--~-------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.+-.+|+|+.+|+.+-. + ...++..+.++..... ...|+.+++||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence 34579999999986321 1 1122333444443322 5789999999999754
No 407
>PRK09739 hypothetical protein; Provisional
Probab=49.71 E-value=56 Score=19.62 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=30.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC-------cCCCCCeEEEEeeCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-------EELRDAILVILANKQ 53 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~p~ilv~nK~ 53 (106)
.-+..+|++|+.+..-.-.-+..+..|+.+.... ..+.+++++++.+--
T Consensus 75 ~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g 130 (199)
T PRK09739 75 SELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVG 130 (199)
T ss_pred HHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecC
Confidence 3467899999998775544455556666665421 123467777776543
No 408
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=49.50 E-value=67 Score=20.49 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=28.4
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
-..+|.++.+|.+.++.......+.++-++++. ..+.|+.++-|=-
T Consensus 152 AA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r-~~~tpVgivrnag 197 (249)
T COG1010 152 AAEADFVIALYNPISKRRPEQLGRAFEILREHR-SPDTPVGIVRNAG 197 (249)
T ss_pred HhhCCEEEEEECCccccchHHHHHHHHHHHHhc-CCCCcEEEEecCC
Confidence 346899999999987654444443333333332 2467888877654
No 409
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=49.32 E-value=56 Score=19.55 Aligned_cols=49 Identities=14% Similarity=0.023 Sum_probs=32.3
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--------cCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--------EELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D 54 (106)
.+..+|.+|+.+.+-.-.-+.-+..|+.+.+.. ..+.+++.+++.+--.
T Consensus 52 ~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~ 108 (176)
T PRK00871 52 ALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGG 108 (176)
T ss_pred HHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCC
Confidence 467899999999886555555566677776641 1245677777666543
No 410
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=49.30 E-value=28 Score=21.19 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=28.7
Q ss_pred hccCCeEEEEEECCCcchHH--HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIG--ISKEELLAMLKEEELRDAILVILANKQDMKNCM 59 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 59 (106)
..+.|++++|+..+. -+-. .....+...+... .-+.++|++|..|.....
T Consensus 81 ~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDD 132 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTT
T ss_pred cCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccc
Confidence 356899999999873 2222 2223344444321 125788899998865443
No 411
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=48.66 E-value=73 Score=20.66 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred cCCeEEEEEECCCcchHHHHHHHH-HHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEEL-LAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
.++++|++++.+..++.++....+ +++.-.....+--++++..|.|.
T Consensus 63 ~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr 110 (271)
T COG1512 63 GAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDR 110 (271)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCC
Confidence 567899999988877766654322 22111111234579999999994
No 412
>PRK13555 azoreductase; Provisional
Probab=47.94 E-value=64 Score=19.80 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=31.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK 52 (106)
-+..+|.+++++..=+-.-+..+..|+...... ..+.+++.+++.+-
T Consensus 86 ~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~ 144 (208)
T PRK13555 86 QFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGAR 144 (208)
T ss_pred HHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcC
Confidence 467899999999876655555566666666542 11346888887653
No 413
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=46.70 E-value=69 Score=19.80 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=25.7
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
....+.|.+++.-|+++.....+....+. .++.. ....+++.||. |.
T Consensus 37 ~~~~~~D~viiaGDl~~~~~~~~~~~~l~-~l~~l--~~~v~~V~GNH-D~ 83 (232)
T cd07393 37 NVVAPEDIVLIPGDISWAMKLEEAKLDLA-WIDAL--PGTKVLLKGNH-DY 83 (232)
T ss_pred hcCCCCCEEEEcCCCccCCChHHHHHHHH-HHHhC--CCCeEEEeCCc-cc
Confidence 33457999999999986544443332222 23321 22235666665 53
No 414
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=46.12 E-value=52 Score=18.21 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=24.5
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDM 55 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 55 (106)
.++|.++++-|..+.....+.... .+++... ...+ +++.|| .|.
T Consensus 18 ~~~D~vi~~GD~~~~~~~~~~~~~-~~~l~~~--~~~~~~~v~GN-HD~ 62 (135)
T cd07379 18 PDGDVLIHAGDLTERGTLEELQKF-LDWLKSL--PHPHKIVIAGN-HDL 62 (135)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHH-HHHHHhC--CCCeEEEEECC-CCC
Confidence 578999999998765544443322 2333321 2233 456666 463
No 415
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=44.55 E-value=25 Score=17.16 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=12.7
Q ss_pred cccCCCChHHHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~ 100 (106)
+|++|.|+.++.+.-.+
T Consensus 44 tAknGgNvKEvme~~lr 60 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALR 60 (71)
T ss_dssp HHHSSS-HHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHH
Confidence 78999999998875543
No 416
>KOG0469|consensus
Probab=44.17 E-value=21 Score=25.57 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=27.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
..++-+|+.+.|+|+-+.--. .....+...+.+ +...+++.||.|.
T Consensus 117 AALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 117 AALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred heeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhH
Confidence 356778999999999654211 111223333333 3344677999994
No 417
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=44.12 E-value=70 Score=19.12 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=27.4
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.+.+|.+++|.++... +..+....... ++.. .....-+|.||.+..
T Consensus 148 ~~~~D~vilV~~~~~~-~~~~~~~~~~~-l~~~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 148 ARACDASILVTDAGEI-KKRDVQKAKEQ-LEQT--GSNFLGVVLNKVDIS 193 (204)
T ss_pred HHhCCeEEEEEECCCC-CHHHHHHHHHH-HHhC--CCCEEEEEEeCcccc
Confidence 4568999999987533 34444433322 3331 224567888999854
No 418
>PRK00170 azoreductase; Reviewed
Probab=43.74 E-value=70 Score=19.03 Aligned_cols=47 Identities=6% Similarity=0.038 Sum_probs=29.3
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK 52 (106)
-+..+|++|+.+..=.-.-...+..|+.++... ..+.+++++++.+-
T Consensus 83 ~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 141 (201)
T PRK00170 83 EFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSR 141 (201)
T ss_pred HHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeC
Confidence 367899999998775443344455566654321 12356888887764
No 419
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=43.70 E-value=80 Score=19.70 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=26.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc-----CCCCCeEEEEee
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE-----ELRDAILVILAN 51 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~ilv~n 51 (106)
|...++.+|++|++..-=+..-..-+.+.+ +++... .+.+||+.+++.
T Consensus 84 l~~~v~~ADgvii~TPEYn~sipg~LKNai-Dwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 84 LRQLSEWSEGQVWCSPERHGAITGSQKDQI-DWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred HHHHHHhCCEEEEeCCccccCcCHHHHHHH-HhcccCcccccccCCCcEEEEEe
Confidence 556678899999986543322222222222 223221 346789888764
No 420
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=43.51 E-value=36 Score=18.95 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=24.1
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.++.+++.=|++- .++...+..+-.. .+.|++.|.||..|.
T Consensus 43 ~a~LVviA~Dv~P----~~~~~~l~~lc~~---~~vpyv~V~sk~~LG 83 (116)
T COG1358 43 KAKLVVIAEDVSP----EELVKHLPALCEE---KNVPYVYVGSKKELG 83 (116)
T ss_pred CCcEEEEecCCCH----HHHHHHHHHHHHh---cCCCEEEeCCHHHHH
Confidence 3566666666642 2233223333232 579999999998764
No 421
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=42.77 E-value=46 Score=18.91 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.0
Q ss_pred EEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 14 IYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 14 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
+.|+|+ |+..+...+.++ ........|.++++|=+.-
T Consensus 24 i~viDC----SW~~l~~~f~k~-~~~~~R~LP~LvAaNPVNY 60 (127)
T PF04034_consen 24 IAVIDC----SWNRLDEVFKKL-RSRNHRLLPYLVAANPVNY 60 (127)
T ss_pred EEEEEC----cHHHHHHHHHhc-CCCCCccCchhhccCCccc
Confidence 457787 566666543332 2222234799999998874
No 422
>PRK06242 flavodoxin; Provisional
Probab=41.60 E-value=65 Score=18.09 Aligned_cols=44 Identities=9% Similarity=-0.099 Sum_probs=24.8
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
+.++|.+++-..+-...-...+..++.++.. ..++++.++++--
T Consensus 41 ~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~---~~~k~~~~f~t~g 84 (150)
T PRK06242 41 LSEYDLIGFGSGIYFGKFHKSLLKLIEKLPP---VSGKKAFIFSTSG 84 (150)
T ss_pred HhHCCEEEEeCchhcCCcCHHHHHHHHhhhh---hcCCeEEEEECCC
Confidence 4577888887654333233334444443321 2468888888854
No 423
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=40.17 E-value=76 Score=18.45 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=17.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHH
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIG 26 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~ 26 (106)
|...+.++|.++++-|..+.....
T Consensus 36 ~~~~~~~~d~vi~~GDl~~~~~~~ 59 (168)
T cd07390 36 WNETVGPDDTVYHLGDFSFGGKAG 59 (168)
T ss_pred HhhhcCCCCEEEEeCCCCCCCChH
Confidence 444566789999999998765543
No 424
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=38.47 E-value=17 Score=16.14 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=11.0
Q ss_pred ccCCeEEEEEECCCcchH
Q psy12794 8 SNTDAIIYVVDSSDRDRI 25 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~ 25 (106)
.+.+.=+.++|+++|..+
T Consensus 17 a~~~~Gl~IvDISnPs~P 34 (42)
T PF08309_consen 17 ADGNNGLVIVDISNPSNP 34 (42)
T ss_pred EeCCCCEEEEECCCCCCC
Confidence 333344668898887543
No 425
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=38.15 E-value=80 Score=18.09 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=28.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.+..+|.++++++++.. +.......+. .++.. ......++.|+.+-.
T Consensus 81 ~l~~ad~viiv~~~~~~-s~~~~~~~~~-~~~~~--~~~~~~iv~N~~~~~ 127 (179)
T cd02036 81 AIAPADEALLVTTPEIS-SLRDADRVKG-LLEAL--GIKVVGVIVNRVRPD 127 (179)
T ss_pred HHHhCCcEEEEeCCCcc-hHHHHHHHHH-HHHHc--CCceEEEEEeCCccc
Confidence 45778999999987643 4444444333 22221 234677899999854
No 426
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=37.91 E-value=86 Score=18.43 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=26.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
++|.--..+-+.++++-.+|+.+.+-. .....++.++||.=
T Consensus 86 vYivtaamdhp~s~~dK~eWl~E~FPF--i~~qn~vfCgnKni 126 (180)
T COG4502 86 VYIVTAAMDHPKSCEDKGEWLKEKFPF--ISYQNIVFCGNKNI 126 (180)
T ss_pred EEEEEeccCCchhHHHHHHHHHHHCCC--CChhhEEEecCCCe
Confidence 333333334678898888888886543 34567888888853
No 427
>KOG2535|consensus
Probab=37.50 E-value=61 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHH
Q psy12794 59 MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMD 96 (106)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~ 96 (106)
.+.+++.+.+....+...++.+..+-...|+|+.++..
T Consensus 303 RDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWK 340 (554)
T KOG2535|consen 303 RDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWK 340 (554)
T ss_pred hhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHHh
Confidence 35567888888888888888888888899999887754
No 428
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=37.24 E-value=85 Score=18.14 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=21.0
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
..+.+++|+|...... .......+.+. .+ ..-++.||.|...
T Consensus 112 ~~~~~~lVv~~~~~~~---~~~~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 112 KPDEVLLVVDAMTGQD---AVNQAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCeEEEEEECCCChH---HHHHHHHHHhh---CC-CCEEEEECCcCCC
Confidence 3677777887754322 11223333222 12 2455668888543
No 429
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.21 E-value=1.3e+02 Score=21.05 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=23.6
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
+.+.+++|+|++......+. ...+.+ .-.+.-+++||.|-.
T Consensus 212 ~p~e~lLVlda~~Gq~a~~~---a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 212 QPDNIIFVMDGSIGQAAEAQ---AKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred CCcEEEEEeccccChhHHHH---HHHHHh----ccCCcEEEEECccCC
Confidence 56788999998654322221 222211 123567889999954
No 430
>KOG1534|consensus
Probab=36.83 E-value=25 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=20.7
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
-+.|.|-|.+|.|+.+.....++.+.+.
T Consensus 163 lE~P~INvlsKMDLlk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 163 LEVPHINVLSKMDLLKDKNKKELERFLN 190 (273)
T ss_pred hcCcchhhhhHHHHhhhhhHHHHHHhcC
Confidence 4689999999999877655555555543
No 431
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.56 E-value=98 Score=18.67 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=15.7
Q ss_pred hccCCeEEEEEECCCcchHHH
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGI 27 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~ 27 (106)
+.++|++++++|..++.++.-
T Consensus 127 le~sdg~ll~YD~ekegs~ky 147 (180)
T COG4474 127 LEKSDGALLFYDEEKEGSPKY 147 (180)
T ss_pred hccCceeEEEEcCcccCChHH
Confidence 567888888888877766554
No 432
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=36.43 E-value=1.1e+02 Score=21.42 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=37.6
Q ss_pred chhhhhccCCeEEEEEECC-----CcchHHHHHHHHHHHhcCcCC------------CCCeEEEEeeCCCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSS-----DRDRIGISKEELLAMLKEEEL------------RDAILVILANKQDMKN 57 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~------------~~~p~ilv~nK~D~~~ 57 (106)
+.+.|+...|-=|+++|+- .+..+.++..-+..+++...- .--.++.+.||.|-..
T Consensus 248 Fyr~hFar~DRQIVLVD~L~aLn~G~~a~~Dm~~AL~~il~sFryG~~~~L~rLf~prIdkvlFAATKADHv~ 320 (443)
T PF04317_consen 248 FYRDHFARFDRQIVLVDCLQALNAGPAAFEDMRQALAQILQSFRYGRSSLLRRLFSPRIDKVLFAATKADHVT 320 (443)
T ss_pred HHHHHHhhhCceEEEEeechhhhcCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhccchhhhheeechhccCC
Confidence 3456788899999999995 345677777666655542221 1136788999999643
No 433
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=36.35 E-value=48 Score=19.55 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.1
Q ss_pred chhhhhccCCeEEEEEECC
Q psy12794 2 YWRCYYSNTDAIIYVVDSS 20 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~ 20 (106)
-|+.|..-||.+.|.++..
T Consensus 79 KW~dY~~~CDRfyfAv~~~ 97 (157)
T PF06319_consen 79 KWPDYLDWCDRFYFAVPPD 97 (157)
T ss_dssp TGGGGGGG-SEEEEEE-TT
T ss_pred cchHHHHhhceeEEecCCC
Confidence 4999999999999999764
No 434
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=35.25 E-value=81 Score=19.04 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=21.6
Q ss_pred hhhhccCCeEEEEEECC---CcchHHHHHHHHHHHhcCcCCCCCeEEEEe
Q psy12794 4 RCYYSNTDAIIYVVDSS---DRDRIGISKEELLAMLKEEELRDAILVILA 50 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 50 (106)
..++...++-++++|+. ++..+.+-..-+...++... .+.|++++-
T Consensus 52 a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h-P~tPIllv~ 100 (178)
T PF14606_consen 52 ADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH-PDTPILLVS 100 (178)
T ss_dssp HHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT--SSS-EEEEE
T ss_pred HHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 34556666666677764 33344443333333343321 457877765
No 435
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=34.66 E-value=1.1e+02 Score=18.54 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=31.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--------cCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--------EELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK 52 (106)
-+..+|.+|+.+.+-.-..+.-+..|+.+.+.. ..+.++++.++.+-
T Consensus 58 ~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~ 112 (184)
T PRK04930 58 LLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITT 112 (184)
T ss_pred HHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEEC
Confidence 356799999999886554555566677776642 12456777777654
No 436
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=34.50 E-value=70 Score=17.89 Aligned_cols=32 Identities=13% Similarity=0.363 Sum_probs=26.1
Q ss_pred cCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 73 LKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 73 ~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+..+.+..+|+-++....+.+..+.+.+.+
T Consensus 91 i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 91 IEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred CChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 35567889999999999988888888877754
No 437
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=33.87 E-value=44 Score=16.69 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=16.6
Q ss_pred eEEEEEECCCcchHHHHHHHHHHH
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAM 35 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~ 35 (106)
.++++||++++.....+...+..+
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~ 26 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSY 26 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHh
Confidence 468899998776666666555554
No 438
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=33.87 E-value=1.2e+02 Score=18.92 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=29.0
Q ss_pred ccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 8 SNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
.++|.++++-|.++.. ..++...++..+ .. .+.|++.|--.+|.
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l-~~---l~~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRIL-GE---AHLPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHH-Hh---cCCceEEEcCCCCh
Confidence 4789999999998865 355544433333 22 34678877777783
No 439
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=32.73 E-value=73 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=6.7
Q ss_pred hccCCeEEEEEECC
Q psy12794 7 YSNTDAIIYVVDSS 20 (106)
Q Consensus 7 ~~~~d~~i~v~d~~ 20 (106)
+.++|++|.++|-.
T Consensus 127 vdhsd~~iavyD~~ 140 (177)
T PF06908_consen 127 VDHSDGLIAVYDGE 140 (177)
T ss_dssp HHHSSEEEEE--TT
T ss_pred HhCCCeEEEEEeCC
Confidence 34566666666654
No 440
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.69 E-value=82 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=20.1
Q ss_pred hhccCCeEEE-EEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 6 YYSNTDAIIY-VVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 6 ~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.+++.|++|+ +.|+..+ .|.-+. .+...+......+++++|+
T Consensus 75 mL~~vDvlvfDiQDvG~R-~YTYi~-Tl~~~MeAaa~~g~~vvVL 117 (365)
T PF07075_consen 75 MLKGVDVLVFDIQDVGVR-FYTYIS-TLYYVMEAAAENGKPVVVL 117 (365)
T ss_pred HHhCCCEEEEeCccCCch-HHHHHH-HHHHHHHHHHHhCCeEEEE
Confidence 4567777665 4444322 222222 2333333333356787775
No 441
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.78 E-value=1.3e+02 Score=18.48 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=29.6
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
..+..+|.+++++.++. .++..+...+.++.... ..+.+.-++.|+.|..
T Consensus 132 ~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 132 QALAAADLVLVVVNADA-ACYATLHQQALALFAGS-GPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence 34677899999988753 34444443333333311 1234567899999854
No 442
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=31.42 E-value=61 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.2
Q ss_pred CCCeEEEEeeCCCC
Q psy12794 42 RDAILVILANKQDM 55 (106)
Q Consensus 42 ~~~p~ilv~nK~D~ 55 (106)
.+.|++.+++|.++
T Consensus 68 ~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 68 KGIPYVYVKKKEDL 81 (117)
T ss_pred cCCCEEEeCCHHHH
Confidence 57899998888765
No 443
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=31.26 E-value=1.6e+02 Score=19.64 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=9.9
Q ss_pred EEccccCCCChHHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
+.++..+...-.+.++.|..-+
T Consensus 35 L~~p~~e~i~~~ef~~~I~~pl 56 (316)
T TIGR03790 35 LDLPPKETISREEFFQQIKEPL 56 (316)
T ss_pred EECCCccccccHHHHHHHHHHH
Confidence 3444444444444455544433
No 444
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=30.25 E-value=1.6e+02 Score=19.78 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=27.6
Q ss_pred ccCCeEEE---EEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 8 SNTDAIIY---VVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 8 ~~~d~~i~---v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.++|.+|+ +||..+| +...... +.+.+......++|++++.---|-++
T Consensus 39 ~~vD~vliAGDlFd~~~P-s~~a~~~-~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 39 EKVDFVLIAGDLFDTNNP-SPRALKL-FLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred ccCCEEEEccccccCCCC-CHHHHHH-HHHHHHHhccCCCcEEEecCCCCchh
Confidence 35688888 5555444 3443333 33444443335788887777778554
No 445
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=29.90 E-value=1.1e+02 Score=17.19 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=23.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
..+.+|++|.+ +..-.+.+++...+....... ..++|++++...
T Consensus 50 m~~~sda~I~l--PGG~GTl~El~~~~~~~~l~~-~~~~Piil~~~~ 93 (133)
T PF03641_consen 50 MIESSDAFIAL--PGGIGTLDELFEALTLMQLGR-HNKVPIILLNID 93 (133)
T ss_dssp HHHHESEEEEE--S-SHHHHHHHHHHHHHHHTTS-STS-EEEEEECG
T ss_pred HHHhCCEEEEE--ecCCchHHHHHHHHHHHhhcc-ccCCCEEEeCCc
Confidence 45678888887 433456777665444322221 123387776543
No 446
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=29.88 E-value=1e+02 Score=16.81 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=23.4
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
.+++...+|+|.. +...+.....+.. +...+ .+.|++++.++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~-i~~~~-~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDK-IRERN-FGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHH-HHHHS-TT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHH-HHHhC-CCCCEEEEecCC
Confidence 3678888888865 2222222222333 22222 579999999865
No 447
>PRK06756 flavodoxin; Provisional
Probab=29.31 E-value=1.1e+02 Score=17.19 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=25.4
Q ss_pred hccCCeEEEEEECCC-cchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 7 YSNTDAIIYVVDSSD-RDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
+.+.|++++....-. .........++..+ ......++++.++++
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l-~~~~l~~k~~~~fgt 91 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAM-DSIDLTGKKAAVFGS 91 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHH-hcCCCCCCEEEEEeC
Confidence 456788888775432 22233344444443 222346789999888
No 448
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=28.91 E-value=1.2e+02 Score=17.53 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
...+..+|.+|.+++++.. +......+. +.++.....-+..-++.|+.+..
T Consensus 111 ~~~l~~ad~viv~~~~~~~-~i~~~~~~~-~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 111 RNALAAADYVIVPIEPDPS-SIEGAERLI-ELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp HHHHHTSSEEEEEEESSHH-HHHHHHHHH-HHHHHHTHTEEEEEEEEEEETSC
T ss_pred HHHHHhCceeeeecCCcHH-HHHHHHHHH-HHHHHhccccceEEEEEeeeCCC
Confidence 4567789999999997642 344444333 33332111124678899999854
No 449
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=28.74 E-value=1.3e+02 Score=17.51 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=24.1
Q ss_pred EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe
Q psy12794 13 IIYVVDSSDRDRIGISKEELLAMLKEEELRDAI 45 (106)
Q Consensus 13 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 45 (106)
.|++.....+++.+++..++.+++.+....+.|
T Consensus 2 ~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p 34 (159)
T cd03411 2 AVLLVNLGGPESLEDVRPFLKNFLSDRRVIELP 34 (159)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCC
Confidence 366777888889999998888888765443333
No 450
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=28.66 E-value=66 Score=15.00 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=11.1
Q ss_pred hccCCeEEEEEECCC
Q psy12794 7 YSNTDAIIYVVDSSD 21 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~ 21 (106)
+-+++++++++++++
T Consensus 30 LC~~~v~~iv~~~~g 44 (51)
T PF00319_consen 30 LCGVDVALIVFSPDG 44 (51)
T ss_dssp HHT-EEEEEEEETTS
T ss_pred ecCCeEEEEEECCCC
Confidence 457899999998764
No 451
>PF08103 Antimicrobial_8: Uperin family; InterPro: IPR012527 This family consists of the uperin family of antimicrobial peptides. Uperin is a wide-spectrum antibiotic peptide isolated from the Australian toadlet, Uperoleia mjobergii. Being only 17 amino acid residues long, it is smaller than most other wide-spectrum antibiotic peptides isolated from amphibians. Uperin adopts a well-defined amphipathic alpha-helix with distinct hydrophilic and hydrophobic faces [].; GO: 0005576 extracellular region
Probab=28.13 E-value=42 Score=11.81 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=9.3
Q ss_pred ChHHHHHHHHHHHh
Q psy12794 90 GLNDSMDWLSNALQ 103 (106)
Q Consensus 90 ~v~~~~~~l~~~~~ 103 (106)
|+.++|..++..++
T Consensus 1 GVgd~~rKivs~iK 14 (17)
T PF08103_consen 1 GVGDAIRKIVSVIK 14 (17)
T ss_pred ChHHHHHHHHHHHH
Confidence 56677777776654
No 452
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.73 E-value=1e+02 Score=17.17 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=32.6
Q ss_pred CeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHH
Q psy12794 44 AILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMD 96 (106)
Q Consensus 44 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~ 96 (106)
..-+++++-.|..+......+.+.++. .....-+..|+.+..+|.+.|.
T Consensus 73 ~~eiiiAtD~drEGe~i~~~i~~~~~~----~~~v~Rl~~sslt~~~I~~A~~ 121 (123)
T cd03363 73 ADEIYLATDPDREGEAIAWHLAEVLKL----KKNVKRVVFNEITKEAIKEALK 121 (123)
T ss_pred CCEEEEcCCCCcchHHHHHHHHHHcCC----CCCeEEEEEccCCHHHHHHHHh
Confidence 456888888886554444456666552 2345677888888888877665
No 453
>PRK13695 putative NTPase; Provisional
Probab=27.06 E-value=1.4e+02 Score=17.37 Aligned_cols=49 Identities=6% Similarity=0.078 Sum_probs=27.4
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++++.+|.... ...+.+. .-.+..++++ +.+|-+++...+.+.++
T Consensus 125 ~~~~~i~v~h~~~~~------~~~~~i~----~~~~~~i~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 125 SEKPVIATLHRRSVH------PFVQEIK----SRPGGRVYEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred CCCeEEEEECchhhH------HHHHHHh----ccCCcEEEEE---cchhhhhHHHHHHHHHh
Confidence 468999999985321 1222222 1123355555 55666777777776653
No 454
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=26.73 E-value=1.5e+02 Score=17.67 Aligned_cols=49 Identities=8% Similarity=-0.036 Sum_probs=32.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--------------cCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--------------EELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--------------~~~~~~p~ilv~nK~D 54 (106)
-+..||.+|+.+.+-.-.-+..+..|+.+.+.. ..+.+++.+++.+--.
T Consensus 75 ~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~ 137 (199)
T PF02525_consen 75 ELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGG 137 (199)
T ss_dssp HHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESS
T ss_pred HHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCC
Confidence 467899999999886555566666677776431 1234677777776543
No 455
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=26.71 E-value=1.4e+02 Score=17.45 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=23.7
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
.++|.+|+-+ |.+=.+....+..+.... ..+.+++|||.|..
T Consensus 68 ~~~D~vvly~----PKaK~e~~~lL~~l~~~L-~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 68 QDFDTVVLYW----PKAKAEAQYLLANLLSHL-PPGTEIFVVGENKG 109 (155)
T ss_dssp TT-SEEEEE------SSHHHHHHHHHHHHTTS--TT-EEEEEEEGGG
T ss_pred cCCCEEEEEc----cCcHHHHHHHHHHHHHhC-CCCCEEEEEecCcc
Confidence 3578877776 334444554455555443 25789999998865
No 456
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=26.38 E-value=94 Score=20.11 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
+..+|+--|++ ..+...++..+-.. .++|++++.+|.++
T Consensus 149 AkLVIIA~DVs----P~t~kk~LP~LC~k---~~VPY~iv~sK~eL 187 (266)
T PTZ00365 149 AKLVVIAHDVD----PIELVCFLPALCRK---KEVPYCIIKGKSRL 187 (266)
T ss_pred ccEEEEeCCCC----HHHHHHHHHHHHhc---cCCCEEEECCHHHH
Confidence 45555555553 33333333232222 57899999999876
No 457
>KOG3852|consensus
Probab=26.20 E-value=2.1e+02 Score=19.27 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=37.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
|++-| +||-+|......|+-+.......+.+....+ +-.-|++ ...-.+.-.+.+-.--.....+..+..|.+
T Consensus 120 ykDLD-lIF~v~l~~e~eFq~vkd~Vl~clldflP~~----v~keKis--p~tlKdaYvqKlvKVctd~drWSLiSLsN~ 192 (426)
T KOG3852|consen 120 YKDLD-LIFPVDLPGEAEFQLVKDVVLDCLLDFLPEG----VNKEKIS--PLTLKDAYVQKLVKVCTDSDRWSLISLSNN 192 (426)
T ss_pred ccccc-eEEeecCCCchhhHHHHHHHHHHHHHhCccc----ccccccC--hhHHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence 44444 4667777777777766654444333211111 1112222 111111111111100013456889999999
Q ss_pred CCCChH
Q psy12794 87 EGEGLN 92 (106)
Q Consensus 87 ~~~~v~ 92 (106)
+|.+++
T Consensus 193 ~GknvE 198 (426)
T KOG3852|consen 193 SGKNVE 198 (426)
T ss_pred CCCeeE
Confidence 999875
No 458
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=26.07 E-value=1.7e+02 Score=18.04 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=28.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
..+..+|.+++++.++ ..+.......+ +.+.... ..+..++.|+++.
T Consensus 129 ~~l~~aD~viiv~~~~-~~s~~~~~~~~-~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 129 NAVAPADEAIVVTTPE-VSAVRDADRVI-GLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred HHHHhCCeEEEEcCCC-cHHHHHHHHHH-HHHHHcC--CCceEEEEeCcCc
Confidence 4466789999988775 33444444333 3333322 2367788899874
No 459
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=26.04 E-value=35 Score=15.57 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=15.4
Q ss_pred CceEEEEccccCCCChHHHHHHHHH
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
.++.++.+....+..++.+..|+-+
T Consensus 14 ~Gl~y~vT~~~s~~~L~k~~~wld~ 38 (45)
T PF12123_consen 14 DGLPYFVTDPLSDAELDKFTAWLDE 38 (45)
T ss_dssp TS-EEEEE----HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678899888888888888777754
No 460
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=26.02 E-value=30 Score=17.77 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=17.5
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
.++.++++.|+.|.+.........+.++
T Consensus 19 ~~~tVmVilN~n~~~~~ldl~ry~E~l~ 46 (78)
T PF10438_consen 19 DGKTVMVILNKNDKEQTLDLKRYAEVLG 46 (78)
T ss_dssp SSEEEEEEEE-SSS-EEEEGGGGHHHHT
T ss_pred CCCEEEEEEcCCCCCeEEcHHHHHHhhC
Confidence 4688999999999765544444444444
No 461
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.75 E-value=1.9e+02 Score=18.55 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.0
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++++-..-.+.+.+++..++..+... .+.|+++-
T Consensus 96 Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~---~~~pi~iY 133 (289)
T PF00701_consen 96 GADAVLVIPPYYFKPSQEELIDYFRAIADA---TDLPIIIY 133 (289)
T ss_dssp T-SEEEEEESTSSSCCHHHHHHHHHHHHHH---SSSEEEEE
T ss_pred CceEEEEeccccccchhhHHHHHHHHHHhh---cCCCEEEE
Confidence 578888776655556777777777666644 56787763
No 462
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=25.68 E-value=1.6e+02 Score=17.86 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=25.1
Q ss_pred CeEEEEEECCC----------cchHHHHHHHHHHHhcC----cCCCCCeEEEEeeC
Q psy12794 11 DAIIYVVDSSD----------RDRIGISKEELLAMLKE----EELRDAILVILANK 52 (106)
Q Consensus 11 d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK 52 (106)
++++|++|++. +..++.....+..+++. .......+++.+++
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~ 57 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTE 57 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEccc
Confidence 57899999863 23455555556666664 22234566666665
No 463
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=25.48 E-value=2.2e+02 Score=20.78 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=29.4
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc--cccCCCChHHHHHHHHHHH
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT--SAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--sa~~~~~v~~~~~~l~~~~ 102 (106)
.+.|++|+.|+..-......+-+.+.. ...+.++..+ =++-|+|-.++-+.+++.+
T Consensus 370 fGvpvVVAIN~F~tDT~aEi~~I~~~~-----~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 370 FGVPVVVAINRFPTDTDAEIELIRELC-----EELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp TT--EEEEEE--TTS-HHHHHHHHHHC-----CCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHH-----HhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 579999999998742222222233333 3345554433 3456788888888777766
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.81 E-value=2.6e+02 Score=19.92 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=18.6
Q ss_pred EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 13 IIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 13 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.++|+|.+.. ...+.+....+ .. .+ .--+++||.|-.
T Consensus 368 ~~LVLdAt~~--~~~l~~i~~~f-~~---~~-~~g~IlTKlDet 404 (484)
T PRK06995 368 RLLLLNATSH--GDTLNEVVQAY-RG---PG-LAGCILTKLDEA 404 (484)
T ss_pred eEEEEeCCCc--HHHHHHHHHHh-cc---CC-CCEEEEeCCCCc
Confidence 5677777542 33333222222 22 22 334568999954
No 465
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=24.81 E-value=1.3e+02 Score=16.18 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=6.1
Q ss_pred CCCeEEEEeeC
Q psy12794 42 RDAILVILANK 52 (106)
Q Consensus 42 ~~~p~ilv~nK 52 (106)
.+.+++++++-
T Consensus 115 ~~~~vvl~G~~ 125 (131)
T PF13401_consen 115 SNIKVVLVGTP 125 (131)
T ss_dssp CBEEEEEEESS
T ss_pred CCCeEEEEECh
Confidence 44566666554
No 466
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=24.72 E-value=2.8e+02 Score=20.10 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=33.4
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++|+.|+..-......+-+.+..... .-.....+.=++-|+|-.++-+.+.+.+.
T Consensus 355 fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~---g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 355 FGVPVVVAINKFSTDTDAELALVRKLAEEA---GAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHc---CCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 579999999999743222222233333210 11223344556667787777777776553
No 467
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.24 E-value=64 Score=12.59 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=10.9
Q ss_pred hhccCCeEEEEEECCC
Q psy12794 6 YYSNTDAIIYVVDSSD 21 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~ 21 (106)
|+...++.++.+|..+
T Consensus 10 ~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 10 YVGSTDGTLYALDAKT 25 (33)
T ss_pred EEEcCCCEEEEEEccc
Confidence 4456677888888754
No 468
>KOG3929|consensus
Probab=24.12 E-value=46 Score=21.78 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.7
Q ss_pred CCeEEEEeeCCCC
Q psy12794 43 DAILVILANKQDM 55 (106)
Q Consensus 43 ~~p~ilv~nK~D~ 55 (106)
..|+++|+.|.|.
T Consensus 190 P~PV~IVgsKYDv 202 (363)
T KOG3929|consen 190 PVPVVIVGSKYDV 202 (363)
T ss_pred CCceEEeccchhh
Confidence 5799999999995
No 469
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=24.11 E-value=2.2e+02 Score=18.82 Aligned_cols=35 Identities=9% Similarity=0.168 Sum_probs=26.6
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI 45 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 45 (106)
...|++.....|++.+++..++.+++.+....+.|
T Consensus 5 k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p 39 (322)
T TIGR00109 5 KTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDIS 39 (322)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCC
Confidence 45778888889999999999998888665444433
No 470
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=23.96 E-value=89 Score=20.17 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=11.8
Q ss_pred CCCeEEEEeeCCCC
Q psy12794 42 RDAILVILANKQDM 55 (106)
Q Consensus 42 ~~~p~ilv~nK~D~ 55 (106)
.++|++++.+|.+|
T Consensus 174 ~~VPY~iVktKaeL 187 (263)
T PTZ00222 174 NKIPYAIVKDMARL 187 (263)
T ss_pred cCCCEEEECCHHHH
Confidence 57899999999875
No 471
>PRK07116 flavodoxin; Provisional
Probab=23.78 E-value=1.6e+02 Score=16.99 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=33.2
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
+.+.|.+++.+.+--......+..++ ....+.+++++++++-..-.......++.+.+.
T Consensus 74 l~~~D~Iiig~Pv~~~~~p~~v~~fl----~~~~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~ 132 (160)
T PRK07116 74 IAEYDVIFLGFPIWWYVAPRIINTFL----ESYDFSGKTVIPFATSGGSGIGNAEKELKKSYP 132 (160)
T ss_pred HHhCCEEEEECChhccccHHHHHHHH----HhcCCCCCEEEEEEeCCCCCcCcHHHHHHHHCC
Confidence 34578888887664333333334333 333456789999888654322234455565554
No 472
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=23.55 E-value=1.6e+02 Score=16.95 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=26.1
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
..+|.++++..++. .+..+....+..+ ... .-...-++.|+.+.
T Consensus 90 ~~ad~viiV~~p~~-~s~~~~~~~~~~l-~~~--~~~~~gvv~N~~~~ 133 (169)
T cd02037 90 LPIDGAVIVTTPQE-VALDDVRKAIDMF-KKV--NIPILGVVENMSYF 133 (169)
T ss_pred cCCCeEEEEECCch-hhHHHHHHHHHHH-Hhc--CCCeEEEEEcCCcc
Confidence 46888999887653 3555555444333 331 22345678999874
No 473
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=23.47 E-value=3.1e+02 Score=20.19 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=33.5
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++|+.|+..-........+.+.... ..-...+...-++-|+|-.++-+.+++.+.
T Consensus 400 fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~---~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 400 SGINPVVCINAFYTDTHAEIAIVRRLAEQ---AGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 57999999999874322222223333321 011234445556667777777777766543
No 474
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=23.10 E-value=99 Score=14.86 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=12.0
Q ss_pred hccCCeEEEEEECCC
Q psy12794 7 YSNTDAIIYVVDSSD 21 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~ 21 (106)
+-++++++++++++.
T Consensus 37 Lc~~~v~~iv~sp~g 51 (59)
T cd00120 37 LCDAEVAVIVFSPSG 51 (59)
T ss_pred ccCCcEEEEEECCCC
Confidence 457889999998865
No 475
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=22.57 E-value=3e+02 Score=19.78 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++|+.||.--........+.+.... ..-....-+.=++-|+|-.++-..+...+.
T Consensus 368 fgvp~VVAIN~F~tDt~~Ei~~i~~~~~~---~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~ 426 (554)
T COG2759 368 FGVPVVVAINKFPTDTEAEIAAIEKLCEE---HGVEVALSEVWAKGGEGGIELAKKVVEAIE 426 (554)
T ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHH---cCCceeehhhhhccCccHHHHHHHHHHHHh
Confidence 57999999999863222122222232221 111233445556778888888777776654
No 476
>smart00432 MADS MADS domain.
Probab=22.41 E-value=99 Score=14.87 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=12.0
Q ss_pred hccCCeEEEEEECCC
Q psy12794 7 YSNTDAIIYVVDSSD 21 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~ 21 (106)
+-++++++++++++.
T Consensus 37 Lc~~~v~~iv~sp~g 51 (59)
T smart00432 37 LCDAEVALIVFSPTG 51 (59)
T ss_pred ccCCeEEEEEECCCC
Confidence 457889999998865
No 477
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.21 E-value=1.5e+02 Score=16.19 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=23.6
Q ss_pred hccCCeEEEEEECCCcc-hH-HHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSSDRD-RI-GISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
+.++|.+++....-... .+ ..+..++..+ ......++++.++++-
T Consensus 43 l~~~d~iilgspty~~g~~p~~~~~~f~~~l-~~~~~~gk~~~vfgt~ 89 (140)
T TIGR01753 43 LLSYDAVLLGCSTWGDEDLEQDDFEPFFEEL-EDIDLGGKKVALFGSG 89 (140)
T ss_pred HhcCCEEEEEcCCCCCCCCCcchHHHHHHHh-hhCCCCCCEEEEEecC
Confidence 45678888877653221 21 2333334332 2222357788887764
No 478
>PLN02759 Formate--tetrahydrofolate ligase
Probab=21.76 E-value=2.2e+02 Score=21.08 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++|+.|+..-......+.+.+..... .-........-++-|+|-.++-+.+++.+.
T Consensus 449 fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~--ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 449 YGVNVVVAINMFATDTEAELEAVRQAALAA--GAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHc--CCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 579999999998743222222333333210 001223444455667777777777776554
No 479
>PRK01355 azoreductase; Reviewed
Probab=21.61 E-value=2e+02 Score=17.33 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=21.4
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHh
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAML 36 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 36 (106)
.-+..||++|++...-.-.-+..+..++.+..
T Consensus 73 ~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~ 104 (199)
T PRK01355 73 NQLKSVDKVVISCPMTNFNVPATLKNYLDHIA 104 (199)
T ss_pred HHHHhCCEEEEEcCccccCChHHHHHHHHHHH
Confidence 45778999999987755444445555665543
No 480
>PRK06703 flavodoxin; Provisional
Probab=21.18 E-value=1.7e+02 Score=16.50 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=22.2
Q ss_pred hccCCeEEEEEECCC-cchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 7 YSNTDAIIYVVDSSD-RDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
+.+.|.+++...... ...+.....++.. +......++++.++++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~-l~~~~l~~k~~~vfg~ 90 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHED-LENIDLSGKKVAVFGS 90 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHH-HhcCCCCCCEEEEEcc
Confidence 456788888774432 2222233333333 3322345678777764
No 481
>PF03569 Peptidase_C8: Peptidase family C8; InterPro: IPR005315 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C8 (clan CA). The peptidases are encoded by the double stranded viral RNAs belonging to the genus Hypovirus.
Probab=21.17 E-value=2.1e+02 Score=17.34 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
+...|.++.++.-..-..|.++...+..++.. ..-| ++||-..
T Consensus 111 Ish~d~cVH~vpGetfr~y~eIkAvL~~~l~n---~p~~-ilvGA~~ 153 (212)
T PF03569_consen 111 ISHSDKCVHIVPGETFRNYKEIKAVLKVILWN---SPEP-ILVGAEE 153 (212)
T ss_pred ccccCCeEEeccCcccccHHHHHHHHHHHHcc---CCcc-eEEeccc
Confidence 34678899998876667788887766666543 2334 5555443
No 482
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=21.16 E-value=2.3e+02 Score=17.95 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=25.6
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
++|.+|+.-|..+..+.++.... .+.+.. .+.|+.++.---|.
T Consensus 55 ~~D~vvitGDl~~~~~~~~~~~~-~~~l~~---l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 55 EFDLIVATGDLAQDHSSEAYQHF-AEGIAP---LRKPCVWLPGNHDF 97 (275)
T ss_pred CCCEEEECCCCCCCCCHHHHHHH-HHHHhh---cCCcEEEeCCCCCC
Confidence 57999999999876555554433 333433 24566554444464
No 483
>CHL00175 minD septum-site determining protein; Validated
Probab=20.62 E-value=2.4e+02 Score=17.87 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=26.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
.+..+|.+++|++++- .+.......+ +.+.... ....-++.|+.+-
T Consensus 145 ~l~~aD~viiV~~p~~-~si~~~~~~~-~~l~~~~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 145 AIAPAQEAIVVTTPEI-TAIRDADRVA-GLLEANG--IYNVKLLVNRVRP 190 (281)
T ss_pred HHHhcCeeEEEcCCCh-HHHHHHHHHH-HHHHHcC--CCceEEEEeccCh
Confidence 4567888988887653 3444444333 2233222 2345678899874
No 484
>KOG3349|consensus
Probab=20.56 E-value=2.1e+02 Score=17.15 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.9
Q ss_pred CCCeEEEEeeCC
Q psy12794 42 RDAILVILANKQ 53 (106)
Q Consensus 42 ~~~p~ilv~nK~ 53 (106)
.++|.++|.|-.
T Consensus 99 l~KPlivVvNd~ 110 (170)
T KOG3349|consen 99 LGKPLIVVVNDS 110 (170)
T ss_pred cCCCEEEEeChH
Confidence 379999999974
No 485
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.39 E-value=1.3e+02 Score=16.85 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=10.9
Q ss_pred CCCeEEEEeeCCCC
Q psy12794 42 RDAILVILANKQDM 55 (106)
Q Consensus 42 ~~~p~ilv~nK~D~ 55 (106)
.+.|++.+++|.++
T Consensus 72 ~~Vp~~~~~tk~eL 85 (122)
T PRK04175 72 KKIPYVYVPSKKDL 85 (122)
T ss_pred cCCCEEEECCHHHH
Confidence 57899888888664
No 486
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.27 E-value=3.1e+02 Score=19.05 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=18.6
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
-..+|++++. ...++...+..+ .. .+ +--+++||.|-.
T Consensus 333 ~~~LVl~a~~--~~~~l~~~~~~f-~~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 333 DVYLVLSATT--KYEDLKDIYKHF-SR---LP-LDGLIFTKLDET 370 (424)
T ss_pred eEEEEEECCC--CHHHHHHHHHHh-CC---CC-CCEEEEeccccc
Confidence 4566676643 233333322222 22 11 235778999854
No 487
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.16 E-value=3.1e+02 Score=18.92 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=26.4
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
+|++++.+.++.. +...++-....-+. ..+.+|-|..|+|...
T Consensus 134 VH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 134 VHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT 176 (373)
T ss_pred eEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence 6889999887643 33333322323222 3477888889999654
Done!