Query psy12794
Match_columns 106
No_of_seqs 119 out of 1841
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 19:47:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b6h_A ADP-ribosylation factor 99.9 3E-21 1E-25 113.6 13.2 105 1-105 88-192 (192)
2 1fzq_A ADP-ribosylation factor 99.9 1.3E-21 4.4E-26 114.2 11.5 103 2-104 76-178 (181)
3 1r8s_A ADP-ribosylation factor 99.9 2.8E-21 9.5E-26 110.6 12.6 104 2-105 60-163 (164)
4 1upt_A ARL1, ADP-ribosylation 99.9 4.8E-21 1.6E-25 110.2 13.6 104 2-105 67-170 (171)
5 3l82_B F-box only protein 4; T 99.9 3.4E-22 1.2E-26 118.3 8.7 103 1-105 117-224 (227)
6 1ksh_A ARF-like protein 2; sma 99.9 1.2E-20 4E-25 110.2 13.9 105 1-105 77-181 (186)
7 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-20 3.7E-25 109.9 13.2 105 1-105 77-181 (183)
8 2x77_A ADP-ribosylation factor 99.9 1.1E-20 3.9E-25 110.5 13.2 104 2-105 82-185 (189)
9 1zj6_A ADP-ribosylation factor 99.9 1.3E-20 4.4E-25 110.2 12.8 103 2-104 76-178 (187)
10 1zd9_A ADP-ribosylation factor 99.9 1.4E-20 4.7E-25 110.3 12.4 104 1-104 82-185 (188)
11 2h17_A ADP-ribosylation factor 99.9 1.3E-20 4.5E-25 109.7 12.1 101 1-101 80-180 (181)
12 1m2o_B GTP-binding protein SAR 99.9 1.9E-20 6.3E-25 110.0 12.5 101 1-101 82-189 (190)
13 1f6b_A SAR1; gtpases, N-termin 99.9 2.4E-20 8.1E-25 110.3 12.6 102 1-102 84-197 (198)
14 4bas_A ADP-ribosylation factor 99.9 6.5E-21 2.2E-25 112.1 9.5 103 2-104 79-189 (199)
15 4dkx_A RAS-related protein RAB 99.9 3.1E-21 1.1E-25 115.7 8.1 97 1-103 77-175 (216)
16 2h57_A ADP-ribosylation factor 99.8 4.3E-20 1.5E-24 108.2 12.3 103 2-104 83-187 (190)
17 3o47_A ADP-ribosylation factor 99.8 8.4E-20 2.9E-24 115.4 13.3 105 1-105 224-328 (329)
18 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-19 4.6E-24 119.5 13.4 103 2-104 382-484 (497)
19 3l2o_B F-box only protein 4; s 99.8 1.3E-20 4.4E-25 116.3 5.9 103 1-105 202-309 (312)
20 3q72_A GTP-binding protein RAD 99.8 3.5E-19 1.2E-23 102.0 10.3 99 2-105 65-165 (166)
21 3t1o_A Gliding protein MGLA; G 99.8 3.7E-19 1.3E-23 104.3 10.5 96 2-104 90-192 (198)
22 3q85_A GTP-binding protein REM 99.8 3.6E-19 1.2E-23 102.2 9.2 99 2-105 68-168 (169)
23 3kkq_A RAS-related protein M-R 99.8 4.4E-19 1.5E-23 103.2 8.7 100 1-105 81-183 (183)
24 3cbq_A GTP-binding protein REM 99.8 7.4E-19 2.5E-23 103.7 9.5 98 2-104 89-188 (195)
25 2g3y_A GTP-binding protein GEM 99.8 9.6E-19 3.3E-23 104.6 9.5 97 3-104 105-203 (211)
26 4dsu_A GTPase KRAS, isoform 2B 99.8 6.8E-19 2.3E-23 102.6 8.2 99 1-104 67-166 (189)
27 1x3s_A RAS-related protein RAB 99.8 2.3E-18 8E-23 100.8 10.5 99 1-104 79-178 (195)
28 2nzj_A GTP-binding protein REM 99.8 2.1E-18 7.3E-23 99.4 10.0 97 3-104 71-169 (175)
29 1c1y_A RAS-related protein RAP 99.8 1.2E-18 4.2E-23 99.7 8.8 98 2-103 67-166 (167)
30 3ihw_A Centg3; RAS, centaurin, 99.8 2.5E-18 8.4E-23 100.6 9.9 95 6-104 82-180 (184)
31 1u8z_A RAS-related protein RAL 99.8 1.1E-18 3.9E-23 99.7 8.3 99 2-105 68-168 (168)
32 2hup_A RAS-related protein RAB 99.8 2.5E-18 8.4E-23 101.7 9.5 97 2-104 94-193 (201)
33 2fu5_C RAS-related protein RAB 99.8 2.4E-18 8.1E-23 100.0 9.0 97 2-104 73-171 (183)
34 3t5g_A GTP-binding protein RHE 99.8 1.7E-18 6E-23 100.5 8.4 98 2-104 70-169 (181)
35 2fn4_A P23, RAS-related protei 99.8 3.6E-18 1.2E-22 98.8 9.0 98 2-104 73-172 (181)
36 2a9k_A RAS-related protein RAL 99.8 3.2E-18 1.1E-22 99.5 8.7 98 2-104 82-181 (187)
37 2iwr_A Centaurin gamma 1; ANK 99.8 1E-17 3.5E-22 97.0 10.7 97 4-104 67-169 (178)
38 2a5j_A RAS-related protein RAB 99.8 5E-18 1.7E-22 99.5 9.4 97 2-104 86-184 (191)
39 2cjw_A GTP-binding protein GEM 99.8 7.8E-18 2.7E-22 99.0 10.2 97 2-103 73-171 (192)
40 2il1_A RAB12; G-protein, GDP, 99.8 6.1E-18 2.1E-22 99.3 9.6 100 2-106 91-192 (192)
41 3oes_A GTPase rhebl1; small GT 99.8 3.2E-18 1.1E-22 101.1 8.3 98 2-104 88-187 (201)
42 3c5h_A Glucocorticoid receptor 99.8 9.3E-19 3.2E-23 107.2 6.2 91 9-103 162-254 (255)
43 2f7s_A C25KG, RAS-related prot 99.8 5.9E-18 2E-22 100.9 9.5 98 2-104 100-199 (217)
44 1g16_A RAS-related protein SEC 99.8 2E-18 6.9E-23 99.0 7.2 98 2-105 68-166 (170)
45 3tkl_A RAS-related protein RAB 99.8 1.1E-17 3.8E-22 98.1 10.3 99 1-105 80-180 (196)
46 2bov_A RAla, RAS-related prote 99.8 6E-18 2.1E-22 99.9 9.2 98 2-104 78-177 (206)
47 3bc1_A RAS-related protein RAB 99.8 5.6E-18 1.9E-22 99.0 8.8 98 2-104 86-185 (195)
48 3dz8_A RAS-related protein RAB 99.8 7.5E-18 2.6E-22 98.8 9.3 98 2-105 88-187 (191)
49 2atv_A RERG, RAS-like estrogen 99.8 3.4E-18 1.2E-22 100.6 7.6 98 2-104 91-191 (196)
50 2bcg_Y Protein YP2, GTP-bindin 99.8 1.8E-17 6.1E-22 98.1 10.7 97 2-104 73-171 (206)
51 2oil_A CATX-8, RAS-related pro 99.8 1.7E-17 6E-22 97.2 10.5 98 1-104 89-188 (193)
52 1z0f_A RAB14, member RAS oncog 99.7 1.4E-17 4.7E-22 96.2 9.5 97 2-104 80-178 (179)
53 2gf9_A RAS-related protein RAB 99.7 1.6E-17 5.6E-22 97.1 9.7 98 2-105 87-186 (189)
54 2ce2_X GTPase HRAS; signaling 99.7 5.5E-18 1.9E-22 96.6 7.4 98 2-104 67-165 (166)
55 2efe_B Small GTP-binding prote 99.7 1.7E-17 5.7E-22 96.2 9.4 96 2-103 77-174 (181)
56 3reg_A RHO-like small GTPase; 99.7 7.3E-18 2.5E-22 99.0 8.0 98 1-104 86-188 (194)
57 1z06_A RAS-related protein RAB 99.7 9E-18 3.1E-22 98.2 8.3 98 2-104 86-188 (189)
58 4djt_A GTP-binding nuclear pro 99.7 1.4E-17 4.7E-22 99.4 9.3 97 2-104 77-175 (218)
59 2o52_A RAS-related protein RAB 99.7 1.6E-17 5.4E-22 98.2 9.4 97 2-104 90-188 (200)
60 3q3j_B RHO-related GTP-binding 99.7 5.8E-18 2E-22 101.1 7.5 97 1-104 90-203 (214)
61 1ek0_A Protein (GTP-binding pr 99.7 7.1E-18 2.4E-22 96.6 7.6 97 2-104 68-169 (170)
62 2g6b_A RAS-related protein RAB 99.7 1.3E-17 4.4E-22 96.6 8.7 97 2-104 76-174 (180)
63 1ky3_A GTP-binding protein YPT 99.7 1.1E-17 3.7E-22 96.9 8.4 99 2-104 74-178 (182)
64 1r2q_A RAS-related protein RAB 99.7 1.2E-17 4.2E-22 95.6 8.5 96 2-103 71-168 (170)
65 2yc2_C IFT27, small RAB-relate 99.7 1.1E-17 3.7E-22 98.9 8.4 98 2-104 89-192 (208)
66 2fg5_A RAB-22B, RAS-related pr 99.7 1.7E-17 5.7E-22 97.4 9.2 97 2-104 88-186 (192)
67 3tw8_B RAS-related protein RAB 99.7 1.9E-17 6.4E-22 95.8 9.2 96 2-104 74-171 (181)
68 2ew1_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 99.1 8.3 97 2-104 91-189 (201)
69 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.7E-17 9.2E-22 95.0 9.7 100 2-105 72-175 (177)
70 1z08_A RAS-related protein RAB 99.7 7.8E-18 2.7E-22 96.6 7.4 97 2-104 71-169 (170)
71 1z2a_A RAS-related protein RAB 99.7 9.1E-18 3.1E-22 96.1 7.7 97 2-105 70-168 (168)
72 3cpj_B GTP-binding protein YPT 99.7 1.8E-17 6.2E-22 99.4 9.2 99 1-105 77-177 (223)
73 3clv_A RAB5 protein, putative; 99.7 2.1E-17 7.2E-22 97.1 9.3 96 2-105 109-205 (208)
74 2bme_A RAB4A, RAS-related prot 99.7 2.1E-17 7.1E-22 96.2 9.1 97 2-104 75-173 (186)
75 2hxs_A RAB-26, RAS-related pro 99.7 2.7E-17 9.2E-22 95.1 9.5 99 1-104 71-173 (178)
76 1zbd_A Rabphilin-3A; G protein 99.7 2.8E-17 9.5E-22 97.0 9.5 97 2-104 73-171 (203)
77 1cip_A Protein (guanine nucleo 99.7 7.2E-18 2.5E-22 107.4 7.1 104 1-104 208-344 (353)
78 3con_A GTPase NRAS; structural 99.7 1.3E-17 4.4E-22 97.5 7.6 98 2-104 85-183 (190)
79 1vg8_A RAS-related protein RAB 99.7 1.3E-17 4.5E-22 98.6 7.7 99 2-104 73-175 (207)
80 2atx_A Small GTP binding prote 99.7 3.1E-17 1.1E-21 96.2 9.2 96 1-103 81-192 (194)
81 3cph_A RAS-related protein SEC 99.7 1.4E-17 4.9E-22 98.8 7.5 97 2-104 85-182 (213)
82 2q3h_A RAS homolog gene family 99.7 3E-17 1E-21 96.7 8.7 96 1-103 83-194 (201)
83 2p5s_A RAS and EF-hand domain 99.7 1.6E-17 5.4E-22 98.0 7.2 98 2-105 93-198 (199)
84 3gj0_A GTP-binding nuclear pro 99.7 5.9E-18 2E-22 101.3 5.4 96 2-104 80-175 (221)
85 1kao_A RAP2A; GTP-binding prot 99.7 9E-18 3.1E-22 95.9 5.9 98 2-104 67-166 (167)
86 4gzl_A RAS-related C3 botulinu 99.7 1.6E-17 5.3E-22 98.5 6.8 97 1-102 93-203 (204)
87 1z0j_A RAB-22, RAS-related pro 99.7 6.7E-17 2.3E-21 92.6 9.3 96 2-103 71-168 (170)
88 2gco_A H9, RHO-related GTP-bin 99.7 7.2E-17 2.5E-21 95.3 9.3 96 2-103 89-199 (201)
89 1zcb_A G alpha I/13; GTP-bindi 99.7 3.5E-17 1.2E-21 104.5 8.3 104 1-104 216-353 (362)
90 3c5c_A RAS-like protein 12; GD 99.7 1.8E-17 6.1E-22 97.0 6.4 98 3-105 85-187 (187)
91 2j0v_A RAC-like GTP-binding pr 99.7 2.3E-17 8E-22 98.0 6.3 97 1-104 72-180 (212)
92 2fv8_A H6, RHO-related GTP-bin 99.7 1.3E-16 4.4E-21 94.6 9.3 102 2-104 89-200 (207)
93 3bwd_D RAC-like GTP-binding pr 99.7 3.1E-17 1.1E-21 95.1 6.5 96 1-103 71-180 (182)
94 1m7b_A RND3/RHOE small GTP-bin 99.7 4.3E-17 1.5E-21 95.0 7.0 98 2-105 71-184 (184)
95 2y8e_A RAB-protein 6, GH09086P 99.7 3.2E-17 1.1E-21 94.7 6.3 97 2-104 79-177 (179)
96 1mh1_A RAC1; GTP-binding, GTPa 99.7 6.8E-17 2.3E-21 93.9 7.4 97 1-104 68-180 (186)
97 2gf0_A GTP-binding protein DI- 99.7 2.1E-17 7.3E-22 97.1 5.2 98 2-104 72-171 (199)
98 2j1l_A RHO-related GTP-binding 99.7 7.9E-17 2.7E-21 96.1 7.6 96 2-104 98-209 (214)
99 2xtz_A Guanine nucleotide-bind 99.7 1.7E-17 5.7E-22 105.7 4.6 104 1-104 198-345 (354)
100 2fh5_B SR-beta, signal recogni 99.7 4.4E-16 1.5E-20 92.6 10.5 100 2-101 71-213 (214)
101 1gwn_A RHO-related GTP-binding 99.7 8.3E-17 2.8E-21 95.6 7.0 98 2-105 92-205 (205)
102 1u0l_A Probable GTPase ENGC; p 99.7 1.4E-16 4.7E-21 99.7 7.9 90 1-100 76-169 (301)
103 3ohm_A Guanine nucleotide-bind 99.7 2E-16 6.9E-21 99.7 8.6 104 1-104 182-318 (327)
104 3llu_A RAS-related GTP-binding 99.7 6.3E-17 2.2E-21 95.3 5.6 96 4-102 90-195 (196)
105 3l0i_B RAS-related protein RAB 99.7 1.8E-17 6.2E-22 97.7 3.2 98 2-105 98-197 (199)
106 2erx_A GTP-binding protein DI- 99.7 8.2E-17 2.8E-21 92.3 5.3 98 2-104 67-167 (172)
107 1azs_C GS-alpha; complex (lyas 99.7 1.8E-16 6.3E-21 102.2 7.0 104 1-104 232-385 (402)
108 1svi_A GTP-binding protein YSX 99.6 7.9E-16 2.7E-20 90.1 7.3 93 2-103 95-194 (195)
109 2wkq_A NPH1-1, RAS-related C3 99.6 7.6E-16 2.6E-20 96.7 7.7 97 1-104 218-330 (332)
110 2zej_A Dardarin, leucine-rich 99.6 3E-16 1E-20 91.5 5.0 97 2-104 72-178 (184)
111 3th5_A RAS-related C3 botulinu 99.4 3.6E-17 1.2E-21 96.7 0.0 100 2-102 94-203 (204)
112 3pqc_A Probable GTP-binding pr 99.6 1.2E-15 4E-20 89.2 6.3 94 2-104 94-194 (195)
113 2lkc_A Translation initiation 99.6 1.8E-14 6.3E-19 83.1 10.9 97 2-104 71-171 (178)
114 4fid_A G protein alpha subunit 99.6 5E-16 1.7E-20 98.3 4.0 103 1-103 176-327 (340)
115 2qu8_A Putative nucleolar GTP- 99.6 2.9E-15 9.8E-20 90.1 6.1 96 4-104 103-205 (228)
116 3r7w_B Gtpase2, GTP-binding pr 99.6 5E-15 1.7E-19 93.3 6.7 99 3-104 66-174 (331)
117 2gj8_A MNME, tRNA modification 99.5 3.8E-15 1.3E-19 86.2 3.8 87 5-103 79-165 (172)
118 2dyk_A GTP-binding protein; GT 99.5 1.1E-14 3.7E-19 82.8 5.3 87 3-102 73-160 (161)
119 2yv5_A YJEQ protein; hydrolase 99.5 1.7E-14 5.7E-19 90.3 6.0 89 2-99 72-164 (302)
120 3iev_A GTP-binding protein ERA 99.5 3.3E-14 1.1E-18 89.1 6.8 95 3-103 86-181 (308)
121 2wji_A Ferrous iron transport 99.5 3.3E-15 1.1E-19 85.7 1.7 86 3-103 73-164 (165)
122 4dhe_A Probable GTP-binding pr 99.5 2.2E-14 7.7E-19 85.6 5.1 97 3-104 106-211 (223)
123 1lnz_A SPO0B-associated GTP-bi 99.5 1.1E-13 3.9E-18 87.8 7.9 97 2-104 226-330 (342)
124 2f9l_A RAB11B, member RAS onco 99.5 6.7E-13 2.3E-17 78.1 10.1 97 2-104 70-168 (199)
125 3r7w_A Gtpase1, GTP-binding pr 99.5 1.9E-13 6.5E-18 85.6 8.0 96 2-102 73-179 (307)
126 2cxx_A Probable GTP-binding pr 99.5 1.3E-14 4.6E-19 84.4 2.5 102 2-104 71-184 (190)
127 2hjg_A GTP-binding protein ENG 99.4 2.3E-13 8E-18 88.8 7.2 94 5-103 253-348 (436)
128 2e87_A Hypothetical protein PH 99.4 5.3E-13 1.8E-17 85.1 8.0 91 6-103 243-335 (357)
129 1xzp_A Probable tRNA modificat 99.4 1.3E-12 4.5E-17 86.2 9.8 87 4-103 318-404 (482)
130 4dcu_A GTP-binding protein ENG 99.4 3.6E-13 1.2E-17 88.3 6.4 94 5-103 273-368 (456)
131 1oix_A RAS-related protein RAB 99.4 2.5E-12 8.7E-17 75.3 9.3 95 2-102 94-190 (191)
132 2wjg_A FEOB, ferrous iron tran 99.4 4.8E-14 1.6E-18 82.1 1.4 88 2-104 76-169 (188)
133 1wf3_A GTP-binding protein; GT 99.4 6.2E-13 2.1E-17 83.2 6.1 92 3-103 80-172 (301)
134 3qq5_A Small GTP-binding prote 99.4 7.5E-13 2.6E-17 86.1 6.6 89 3-103 107-195 (423)
135 3iby_A Ferrous iron transport 99.4 2.1E-14 7.1E-19 88.0 -0.9 85 2-101 74-164 (256)
136 3dpu_A RAB family protein; roc 99.4 1E-12 3.6E-17 87.6 7.2 93 2-104 114-208 (535)
137 3gee_A MNME, tRNA modification 99.4 5.1E-12 1.7E-16 83.3 9.1 88 5-103 308-397 (476)
138 3b1v_A Ferrous iron uptake tra 99.4 6.6E-14 2.2E-18 86.5 0.2 87 2-103 71-163 (272)
139 1mky_A Probable GTP-binding pr 99.3 2.2E-12 7.4E-17 84.3 6.9 89 3-103 75-165 (439)
140 2hjg_A GTP-binding protein ENG 99.3 6.1E-12 2.1E-16 82.1 8.7 88 3-103 76-164 (436)
141 3a1s_A Iron(II) transport prot 99.3 5.8E-12 2E-16 77.2 7.8 85 4-103 76-166 (258)
142 3i8s_A Ferrous iron transport 99.3 2.8E-14 9.5E-19 88.2 -2.6 86 3-103 77-168 (274)
143 3sjy_A Translation initiation 99.3 3.9E-12 1.3E-16 82.3 7.0 96 3-103 92-191 (403)
144 1mky_A Probable GTP-binding pr 99.3 9.8E-12 3.3E-16 81.2 7.3 94 5-103 259-354 (439)
145 3geh_A MNME, tRNA modification 99.3 3.6E-11 1.2E-15 79.0 9.2 85 6-104 300-384 (462)
146 2ywe_A GTP-binding protein LEP 99.3 5.4E-11 1.8E-15 80.3 9.7 94 3-103 90-183 (600)
147 3h2y_A GTPase family protein; 99.2 3.3E-12 1.1E-16 81.8 3.2 93 2-102 62-158 (368)
148 3izy_P Translation initiation 99.2 1.4E-11 4.8E-16 82.2 6.1 96 2-103 68-167 (537)
149 3cb4_D GTP-binding protein LEP 99.2 3.5E-11 1.2E-15 81.2 8.1 91 3-103 88-181 (599)
150 3k53_A Ferrous iron transport 99.2 3.1E-11 1.1E-15 74.3 7.2 88 3-104 73-166 (271)
151 1s0u_A EIF-2-gamma, translatio 99.2 2.1E-10 7.2E-15 74.3 10.8 93 6-103 101-197 (408)
152 1ega_A Protein (GTP-binding pr 99.2 2.8E-11 9.5E-16 75.7 5.9 90 4-103 83-174 (301)
153 1g7s_A Translation initiation 99.2 2.6E-10 9E-15 77.0 9.8 94 2-103 86-217 (594)
154 3ec1_A YQEH GTPase; atnos1, at 99.2 1.2E-11 4.2E-16 79.2 3.0 94 2-103 64-161 (369)
155 1nrj_B SR-beta, signal recogni 99.2 3.5E-12 1.2E-16 75.9 0.4 59 2-60 71-137 (218)
156 1puj_A YLQF, conserved hypothe 99.1 8.8E-11 3E-15 72.9 6.2 87 5-103 19-105 (282)
157 3tr5_A RF-3, peptide chain rel 99.1 1.9E-10 6.4E-15 76.8 8.0 51 3-58 99-149 (528)
158 2qtf_A Protein HFLX, GTP-bindi 99.1 4.1E-10 1.4E-14 72.1 9.2 92 6-104 254-354 (364)
159 1wb1_A Translation elongation 99.1 1.1E-10 3.8E-15 77.1 6.4 95 3-103 90-188 (482)
160 4dcu_A GTP-binding protein ENG 99.1 8.1E-11 2.8E-15 77.2 5.5 89 3-103 96-184 (456)
161 2aka_B Dynamin-1; fusion prote 99.1 1.6E-10 5.5E-15 71.7 5.8 94 2-101 154-250 (299)
162 1kk1_A EIF2gamma; initiation o 99.1 6.3E-10 2.2E-14 72.1 8.3 92 7-103 104-199 (410)
163 2ged_A SR-beta, signal recogni 99.0 4.3E-10 1.5E-14 65.5 5.6 67 2-68 107-181 (193)
164 1jny_A EF-1-alpha, elongation 99.0 2E-10 6.8E-15 75.0 4.5 89 3-95 101-204 (435)
165 1udx_A The GTP-binding protein 99.0 1.8E-09 6.2E-14 70.2 7.8 92 7-104 233-325 (416)
166 3p26_A Elongation factor 1 alp 99.0 1.5E-09 5E-14 71.8 7.3 89 3-93 128-227 (483)
167 1zo1_I IF2, translation initia 99.0 2.6E-10 9E-15 75.6 3.7 90 2-100 67-163 (501)
168 1d2e_A Elongation factor TU (E 99.0 7E-10 2.4E-14 71.7 5.1 96 3-103 83-194 (397)
169 1zun_B Sulfate adenylate trans 99.0 4.9E-09 1.7E-13 68.5 9.0 88 3-94 121-214 (434)
170 2c78_A Elongation factor TU-A; 98.9 7E-10 2.4E-14 71.8 4.3 95 3-102 92-210 (405)
171 2j69_A Bacterial dynamin-like 98.9 3.7E-09 1.3E-13 72.6 7.7 97 3-103 194-324 (695)
172 3j2k_7 ERF3, eukaryotic polype 98.9 3.8E-09 1.3E-13 69.1 7.4 90 3-96 112-217 (439)
173 2elf_A Protein translation elo 98.9 4.3E-09 1.5E-13 67.6 7.4 90 5-103 79-179 (370)
174 2qag_A Septin-2, protein NEDD5 98.9 2.9E-10 9.7E-15 72.8 1.3 82 12-104 148-233 (361)
175 1yrb_A ATP(GTP)binding protein 98.9 2.8E-09 9.5E-14 65.0 4.7 97 6-103 135-256 (262)
176 2xtp_A GTPase IMAP family memb 98.9 3.2E-09 1.1E-13 64.8 4.8 94 5-104 101-208 (260)
177 3p32_A Probable GTPase RV1496/ 98.8 1.8E-09 6.1E-14 68.9 3.6 89 6-103 189-283 (355)
178 1jwy_B Dynamin A GTPase domain 98.8 6.7E-09 2.3E-13 64.9 6.1 95 3-103 161-261 (315)
179 2wsm_A Hydrogenase expression/ 98.8 9.5E-09 3.2E-13 61.1 5.2 84 8-103 128-213 (221)
180 3avx_A Elongation factor TS, e 98.8 6.9E-09 2.4E-13 74.4 5.1 94 4-102 377-484 (1289)
181 2dy1_A Elongation factor G; tr 98.8 2E-08 6.9E-13 68.7 7.2 49 3-56 91-139 (665)
182 3izq_1 HBS1P, elongation facto 98.8 1.1E-09 3.8E-14 74.2 0.8 89 3-94 262-362 (611)
183 1r5b_A Eukaryotic peptide chai 98.8 5.1E-09 1.7E-13 69.0 3.5 89 3-95 138-243 (467)
184 1pui_A ENGB, probable GTP-bind 98.7 3.5E-08 1.2E-12 58.1 6.6 88 8-103 107-198 (210)
185 3mca_A HBS1, elongation factor 98.7 7.1E-10 2.4E-14 74.9 -0.8 85 4-92 273-371 (592)
186 3cnl_A YLQF, putative uncharac 98.7 1.6E-09 5.4E-14 66.6 0.8 80 5-99 17-96 (262)
187 1t9h_A YLOQ, probable GTPase E 98.7 2.5E-09 8.4E-14 67.1 1.6 86 3-97 80-170 (307)
188 2h5e_A Peptide chain release f 98.7 2.8E-07 9.7E-12 61.7 11.2 51 3-58 99-149 (529)
189 3t5d_A Septin-7; GTP-binding p 98.7 1.7E-09 5.7E-14 66.7 0.2 83 10-102 116-202 (274)
190 1dar_A EF-G, elongation factor 98.7 3.5E-07 1.2E-11 62.9 10.7 52 2-58 93-144 (691)
191 2www_A Methylmalonic aciduria 98.6 1.9E-07 6.5E-12 59.5 8.0 90 5-103 183-278 (349)
192 1f60_A Elongation factor EEF1A 98.6 5.4E-08 1.8E-12 64.1 5.0 88 3-94 102-202 (458)
193 2p67_A LAO/AO transport system 98.6 9.3E-08 3.2E-12 60.7 5.3 89 6-103 166-260 (341)
194 3t34_A Dynamin-related protein 98.6 2.8E-08 9.6E-13 63.4 2.5 89 2-97 165-254 (360)
195 2rcn_A Probable GTPase ENGC; Y 98.6 3.5E-07 1.2E-11 58.5 7.5 83 7-98 128-213 (358)
196 3lxw_A GTPase IMAP family memb 98.6 2.4E-07 8.2E-12 56.3 6.5 90 8-104 104-208 (247)
197 2hf9_A Probable hydrogenase ni 98.6 5.1E-08 1.7E-12 58.1 3.5 59 43-104 164-224 (226)
198 2xex_A Elongation factor G; GT 98.6 1.8E-06 6E-11 59.5 11.4 51 3-58 92-142 (693)
199 2x2e_A Dynamin-1; nitration, h 98.5 4.5E-08 1.6E-12 62.3 2.9 93 3-100 160-254 (353)
200 3zvr_A Dynamin-1; hydrolase, D 98.5 1.7E-07 5.8E-12 65.0 4.6 88 8-100 186-274 (772)
201 2rdo_7 EF-G, elongation factor 98.5 2.6E-06 8.8E-11 58.9 10.1 51 2-57 98-148 (704)
202 3lxx_A GTPase IMAP family memb 98.4 1.7E-07 5.8E-12 56.5 3.7 94 4-104 107-214 (239)
203 2qnr_A Septin-2, protein NEDD5 98.3 1.2E-07 3.9E-12 59.4 1.1 56 43-104 155-214 (301)
204 1wxq_A GTP-binding protein; st 98.2 9.5E-08 3.3E-12 61.9 -0.9 47 43-94 214-260 (397)
205 2qag_C Septin-7; cell cycle, c 98.1 2.4E-07 8.1E-12 60.4 -0.9 87 6-102 133-225 (418)
206 3vqt_A RF-3, peptide chain rel 98.1 5.4E-05 1.9E-09 51.0 10.2 49 5-58 119-167 (548)
207 2qpt_A EH domain-containing pr 98.0 5.2E-06 1.8E-10 55.9 4.0 52 3-58 182-233 (550)
208 2qm8_A GTPase/ATPase; G protei 97.9 3.1E-05 1.1E-09 49.2 5.9 88 7-103 166-260 (337)
209 1n0u_A EF-2, elongation factor 97.7 6E-05 2.1E-09 53.1 5.2 50 2-56 114-163 (842)
210 3j25_A Tetracycline resistance 97.5 0.00019 6.7E-09 49.2 5.5 94 5-103 86-238 (638)
211 1h65_A Chloroplast outer envel 97.5 0.00012 4E-09 44.9 3.8 50 7-57 117-168 (270)
212 4fn5_A EF-G 1, elongation fact 97.4 0.0014 4.7E-08 45.5 9.2 48 5-57 104-151 (709)
213 3def_A T7I23.11 protein; chlor 97.4 0.00014 4.7E-09 44.4 3.4 47 9-56 116-164 (262)
214 1jal_A YCHF protein; nucleotid 97.1 0.012 4E-07 37.9 10.0 41 42-87 198-240 (363)
215 2dby_A GTP-binding protein; GD 97.0 0.0023 7.9E-08 41.2 6.4 47 42-93 200-251 (368)
216 4a9a_A Ribosome-interacting GT 95.1 0.026 8.8E-07 36.5 3.9 48 6-55 146-194 (376)
217 2j37_W Signal recognition part 95.0 0.18 6.2E-06 33.9 7.8 85 9-101 213-310 (504)
218 2qag_B Septin-6, protein NEDD5 92.5 0.057 2E-06 35.5 1.9 39 13-57 152-190 (427)
219 4a9a_A Ribosome-interacting GT 91.4 0.93 3.2E-05 29.3 6.5 51 42-102 248-298 (376)
220 3dm5_A SRP54, signal recogniti 91.3 0.64 2.2E-05 30.8 5.8 43 8-57 211-253 (443)
221 3sop_A Neuronal-specific septi 86.6 1.9 6.5E-05 26.4 5.2 43 9-57 111-154 (270)
222 3u7r_A NADPH-dependent FMN red 81.8 4.7 0.00016 23.4 5.2 50 3-52 61-113 (190)
223 2ohf_A Protein OLA1, GTP-bindi 80.6 0.93 3.2E-05 29.6 2.1 20 3-22 110-129 (396)
224 1tq4_A IIGP1, interferon-induc 78.3 1.6 5.5E-05 28.6 2.6 62 42-103 174-252 (413)
225 4hs4_A Chromate reductase; tri 76.3 9.1 0.00031 22.2 5.4 49 4-52 68-118 (199)
226 3ea0_A ATPase, para family; al 74.2 11 0.00037 22.1 8.9 64 5-70 136-199 (245)
227 3fvw_A Putative NAD(P)H-depend 73.6 9 0.00031 22.0 4.8 51 4-54 62-121 (192)
228 3k1y_A Oxidoreductase; structu 71.8 12 0.0004 21.7 5.0 47 4-51 80-126 (191)
229 3svl_A Protein YIEF; E. coli C 67.3 16 0.00053 21.1 5.5 49 4-52 67-117 (193)
230 2q62_A ARSH; alpha/beta, flavo 67.1 14 0.00048 22.3 4.8 48 5-52 94-145 (247)
231 1rtt_A Conserved hypothetical 65.7 9.7 0.00033 21.7 3.8 48 6-53 69-118 (193)
232 1ni3_A YCHF GTPase, YCHF GTP-b 65.7 18 0.00062 23.6 5.3 58 42-102 223-305 (392)
233 3end_A Light-independent proto 62.8 24 0.00081 21.6 7.0 62 5-69 175-237 (307)
234 3lcm_A SMU.1420, putative oxid 61.9 20 0.00069 20.6 5.2 48 6-53 70-129 (196)
235 1t0i_A YLR011WP; FMN binding p 60.8 20 0.00069 20.2 4.7 45 5-51 80-124 (191)
236 1s2d_A Purine trans deoxyribos 60.2 21 0.00073 20.2 5.4 39 6-50 78-116 (167)
237 1d4a_A DT-diaphorase, quinone 60.1 22 0.00076 21.7 4.8 48 7-54 91-150 (273)
238 1f8y_A Nucleoside 2-deoxyribos 60.1 21 0.0007 20.1 4.4 42 6-53 75-116 (157)
239 2v3c_C SRP54, signal recogniti 59.8 20 0.0007 23.6 4.8 41 9-57 210-252 (432)
240 3f2v_A General stress protein 59.0 24 0.00082 20.4 4.9 49 6-54 55-111 (192)
241 3cwq_A Para family chromosome 58.0 25 0.00085 20.3 5.4 49 5-57 86-134 (209)
242 4dzz_A Plasmid partitioning pr 57.9 23 0.00079 19.9 5.8 49 5-56 93-143 (206)
243 2vzf_A NADH-dependent FMN redu 57.1 21 0.00073 20.4 4.2 45 6-51 66-110 (197)
244 3szr_A Interferon-induced GTP- 56.0 12 0.00042 25.7 3.5 16 42-57 213-228 (608)
245 3r6w_A FMN-dependent NADH-azor 55.6 25 0.00085 20.3 4.4 47 7-53 85-147 (212)
246 3gfs_A FMN-dependent NADPH-azo 54.8 10 0.00035 21.2 2.5 48 5-53 59-106 (174)
247 1t5b_A Acyl carrier protein ph 53.5 26 0.0009 19.7 4.2 48 6-53 83-142 (201)
248 3hyn_A Putative signal transdu 52.7 25 0.00084 20.6 3.8 45 6-54 76-120 (189)
249 3kl4_A SRP54, signal recogniti 52.6 18 0.0006 24.0 3.6 41 9-56 211-251 (433)
250 3ehd_A Uncharacterized conserv 51.9 31 0.001 19.6 4.7 44 6-55 66-109 (162)
251 1eiw_A Hypothetical protein MT 51.5 21 0.00073 18.8 3.3 41 7-52 36-76 (111)
252 2fzv_A Putative arsenical resi 50.3 29 0.001 21.5 4.2 49 4-52 118-170 (279)
253 3ha2_A NADPH-quinone reductase 49.8 34 0.0012 19.5 5.5 49 6-54 48-103 (177)
254 2ark_A Flavodoxin; FMN, struct 49.4 34 0.0012 19.3 4.8 48 7-54 50-99 (188)
255 2hpv_A FMN-dependent NADH-azor 48.4 37 0.0012 19.4 4.9 47 6-52 91-149 (208)
256 2fz5_A Flavodoxin; alpha/beta 48.0 29 0.00098 18.1 3.6 45 7-53 44-90 (137)
257 2l82_A Designed protein OR32; 47.0 32 0.0011 18.3 6.1 78 3-102 72-149 (162)
258 3tem_A Ribosyldihydronicotinam 46.4 44 0.0015 19.8 5.4 48 7-54 90-149 (228)
259 3bfv_A CAPA1, CAPB2, membrane 46.2 48 0.0016 20.1 5.2 45 7-56 212-257 (271)
260 2a5l_A Trp repressor binding p 45.5 27 0.00093 19.7 3.4 49 6-54 68-119 (200)
261 1rli_A Trp repressor binding p 44.3 30 0.001 19.2 3.4 47 6-52 68-124 (184)
262 3la6_A Tyrosine-protein kinase 43.5 55 0.0019 20.1 5.7 46 7-56 222-267 (286)
263 2khz_A C-MYC-responsive protei 43.0 39 0.0013 19.0 3.7 41 6-54 74-114 (165)
264 1j8m_F SRP54, signal recogniti 42.1 58 0.002 20.2 4.7 42 7-56 210-252 (297)
265 1sqs_A Conserved hypothetical 42.0 52 0.0018 19.4 4.9 46 7-52 77-125 (242)
266 3pzx_A Formate--tetrahydrofola 39.9 91 0.0031 21.6 6.4 57 42-103 373-429 (557)
267 3uc9_A Increased recombination 39.5 63 0.0022 19.6 5.0 81 11-99 104-194 (233)
268 3l9w_A Glutathione-regulated p 38.6 81 0.0028 20.6 5.3 49 6-54 289-345 (413)
269 3kjh_A CO dehydrogenase/acetyl 38.2 56 0.0019 18.9 4.1 59 5-69 149-207 (254)
270 2nx2_A Hypothetical protein YP 37.4 33 0.0011 19.7 2.9 15 7-21 128-142 (181)
271 3d7n_A Flavodoxin, WRBA-like p 36.6 58 0.002 18.4 3.9 48 6-53 51-101 (193)
272 2ph1_A Nucleotide-binding prot 36.6 67 0.0023 19.1 5.6 42 9-55 152-194 (262)
273 2jvf_A De novo protein M7; tet 36.1 17 0.00056 17.7 1.2 26 79-104 50-75 (96)
274 1obo_A Flavodoxin; electron tr 34.8 43 0.0015 18.3 3.1 45 7-52 44-89 (169)
275 3s2y_A Chromate reductase; ura 41.1 8.2 0.00028 22.4 0.0 48 5-52 69-118 (199)
276 3p0r_A Azoreductase; structura 34.8 68 0.0023 18.6 5.3 47 6-52 89-147 (211)
277 2f62_A Nucleoside 2-deoxyribos 34.5 63 0.0022 18.2 4.6 42 6-53 64-108 (161)
278 3b6i_A Flavoprotein WRBA; flav 33.3 28 0.00097 19.6 2.2 49 6-54 65-116 (198)
279 2xzm_U Ribosomal protein L7AE 31.6 48 0.0016 17.9 2.7 14 42-55 66-79 (126)
280 4ici_A Putative flavoprotein; 31.5 71 0.0024 17.8 8.2 59 7-69 85-143 (171)
281 3k9g_A PF-32 protein; ssgcid, 31.4 84 0.0029 18.6 6.5 47 5-54 162-208 (267)
282 1ydg_A Trp repressor binding p 31.0 61 0.0021 18.5 3.3 48 6-53 75-125 (211)
283 1wcv_1 SOJ, segregation protei 30.5 86 0.003 18.5 4.8 49 6-56 130-182 (257)
284 1uf3_A Hypothetical protein TT 30.3 78 0.0027 17.9 3.8 43 9-55 32-75 (228)
285 2him_A L-asparaginase 1; hydro 30.3 1.1E+02 0.0038 19.7 4.8 45 6-56 98-142 (358)
286 1wls_A L-asparaginase; structu 29.9 1.1E+02 0.0037 19.4 5.0 45 6-56 70-114 (328)
287 3dnx_A Uncharacterized protein 29.1 48 0.0016 18.7 2.4 20 2-21 71-90 (153)
288 1g3q_A MIND ATPase, cell divis 28.9 87 0.003 18.0 6.6 61 5-69 129-190 (237)
289 1ag9_A Flavodoxin; electron tr 28.5 61 0.0021 18.0 3.0 44 7-51 43-87 (175)
290 3p04_A Uncharacterized BCR; SE 28.3 48 0.0017 16.7 2.2 29 22-55 12-40 (87)
291 1czn_A Flavodoxin; FMN binding 28.0 37 0.0013 18.6 2.0 45 7-52 44-89 (169)
292 3u7i_A FMN-dependent NADH-azor 27.9 97 0.0033 18.2 5.1 49 6-54 91-152 (223)
293 2zki_A 199AA long hypothetical 27.9 85 0.0029 17.6 4.4 49 6-54 67-118 (199)
294 2amj_A Modulator of drug activ 27.7 92 0.0031 17.9 5.4 30 6-35 67-96 (204)
295 1xky_A Dihydrodipicolinate syn 27.4 1.1E+02 0.0039 18.9 4.4 39 8-49 106-144 (301)
296 3eb2_A Putative dihydrodipicol 27.0 1.2E+02 0.004 18.9 4.3 38 9-49 99-136 (300)
297 1hyq_A MIND, cell division inh 27.0 91 0.0031 18.3 3.7 47 6-56 129-175 (263)
298 4dez_A POL IV 1, DNA polymeras 27.0 94 0.0032 19.7 3.9 33 12-51 3-35 (356)
299 5nul_A Flavodoxin; electron tr 26.9 75 0.0026 16.6 3.7 44 7-52 43-88 (138)
300 1o5k_A DHDPS, dihydrodipicolin 26.5 1.2E+02 0.0041 18.9 4.6 38 9-49 107-144 (306)
301 3rl5_A Metallophosphoesterase 26.4 1.1E+02 0.0037 19.1 4.0 46 7-55 77-122 (296)
302 3l21_A DHDPS, dihydrodipicolin 26.4 1.2E+02 0.0042 18.9 4.6 44 9-55 110-157 (304)
303 4f4y_A POL IV, DNA polymerase 26.0 1E+02 0.0035 19.7 4.0 33 13-52 2-34 (362)
304 2ojp_A DHDPS, dihydrodipicolin 25.8 1.2E+02 0.0042 18.7 4.7 38 9-49 96-133 (292)
305 2v9d_A YAGE; dihydrodipicolini 25.6 1.3E+02 0.0046 19.1 4.4 38 9-49 126-163 (343)
306 2ehh_A DHDPS, dihydrodipicolin 24.3 1.1E+02 0.0038 18.9 3.8 39 8-49 94-132 (294)
307 1zpw_X Hypothetical protein TT 24.1 77 0.0026 15.8 2.7 23 13-35 6-28 (90)
308 4fyk_A Deoxyribonucleoside 5'- 23.7 1.1E+02 0.0036 17.2 3.9 38 6-51 65-102 (152)
309 2yxg_A DHDPS, dihydrodipicolin 23.5 1.2E+02 0.0039 18.7 3.7 38 9-49 95-132 (289)
310 2vc6_A MOSA, dihydrodipicolina 23.4 1.2E+02 0.004 18.8 3.7 39 8-49 94-132 (292)
311 3qze_A DHDPS, dihydrodipicolin 23.3 1.2E+02 0.0039 19.1 3.7 39 8-49 117-155 (314)
312 3m5v_A DHDPS, dihydrodipicolin 23.2 1.2E+02 0.004 18.9 3.7 39 8-49 102-140 (301)
313 3tak_A DHDPS, dihydrodipicolin 22.8 1.2E+02 0.0042 18.6 3.8 38 9-49 96-133 (291)
314 1w3i_A EDA, 2-keto-3-deoxy glu 22.8 1.2E+02 0.0043 18.6 3.8 38 9-49 91-129 (293)
315 3si9_A DHDPS, dihydrodipicolin 22.5 1.2E+02 0.0042 19.0 3.7 38 9-49 117-154 (315)
316 3cpr_A Dihydrodipicolinate syn 22.4 1.3E+02 0.0043 18.7 3.8 39 8-49 110-148 (304)
317 4ecq_A DNA polymerase ETA; tra 22.2 97 0.0033 20.4 3.4 38 8-52 6-43 (435)
318 3flu_A DHDPS, dihydrodipicolin 21.7 1.3E+02 0.0046 18.5 3.8 38 9-49 102-139 (297)
319 1wgn_A UBAP1, ubiquitin associ 21.3 71 0.0024 15.1 1.9 16 87-102 43-58 (63)
320 1ydh_A AT5G11950; structural g 21.2 1.4E+02 0.0048 17.7 4.4 42 6-51 102-143 (216)
No 1
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.88 E-value=3e-21 Score=113.61 Aligned_cols=105 Identities=51% Similarity=0.905 Sum_probs=88.5
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 36888999999999999999999999998888888776555679999999999997766667777777644444567899
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++++++.+.+.+|
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELSKR 192 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTTTC
T ss_pred EECcCCCcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999988654
No 2
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=1.3e-21 Score=114.19 Aligned_cols=103 Identities=41% Similarity=0.756 Sum_probs=84.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.++.....++..++......+.|+++++||+|+.+.....++.+.++.......+++++
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ 155 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEE
Confidence 57889999999999999999999999888888877665456799999999999987666666776665433344568999
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|++++|+++.+.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=2.8e-21 Score=110.63 Aligned_cols=104 Identities=49% Similarity=0.900 Sum_probs=85.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus 60 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (164)
T 1r8s_A 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ 139 (164)
T ss_dssp HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEE
Confidence 57789999999999999999999999888888877765556799999999999977666667777666444444578899
Q ss_pred EccccCCCChHHHHHHHHHHHhhc
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++||++|.|++++++++.+.+.++
T Consensus 140 ~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 140 ATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC---
T ss_pred EcccCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999999887654
No 4
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=4.8e-21 Score=110.23 Aligned_cols=104 Identities=66% Similarity=1.111 Sum_probs=88.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIF 146 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEE
Confidence 57889999999999999999999999888888887765446799999999999987666667777766444455678999
Q ss_pred EccccCCCChHHHHHHHHHHHhhc
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++||++|.|++++++++.+.+.++
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 147 KTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ECcCCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999999988764
No 5
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=118.31 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=83.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHH---HHHhcCcC-CCCCeEEEEeeCC-CCCCcCCHHHHHHHhCCCCcCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEE-LRDAILVILANKQ-DMKNCMSVAEVHRALGLENLKD 75 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~~~~~~~~~ 75 (106)
|+|++||.++|++|||+|.+++...+ ...++ ..++.+.. +.+.|++|++||. |++......++.+.++.... .
T Consensus 117 plWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~ 194 (227)
T 3l82_B 117 PQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-N 194 (227)
T ss_dssp CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-C
T ss_pred HHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-C
Confidence 68999999999999999999875543 34344 34444432 4679999999995 78888888999999987665 4
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+.+.+..|||.+|+|+.+.++||.+.+..+
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 789999999999999999999999887643
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=1.2e-20 Score=110.16 Aligned_cols=105 Identities=39% Similarity=0.701 Sum_probs=87.7
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..+++++|++++|+|++++.++.....++..........+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEE
Confidence 36788999999999999999999999988888887776444679999999999998766666777766543334467899
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++++++.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988754
No 7
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-20 Score=109.93 Aligned_cols=105 Identities=49% Similarity=0.924 Sum_probs=88.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..+++++|++++|+|++++.++.....++..........+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 36888999999999999999999999988888888765444679999999999998766677787777654444567899
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++++++.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988643
No 8
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=1.1e-20 Score=110.53 Aligned_cols=104 Identities=53% Similarity=0.996 Sum_probs=87.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIV 161 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEE
Confidence 57789999999999999999999999888888887765556799999999999977666667777666444445677999
Q ss_pred EccccCCCChHHHHHHHHHHHhhc
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++||++|.|++++++++.+.+.++
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988653
No 9
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.3e-20 Score=110.23 Aligned_cols=103 Identities=47% Similarity=0.812 Sum_probs=86.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+.....++.+.++.......+++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence 67889999999999999999999999998888887764446799999999999987666677777665433344578999
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|++++++++.+.+..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988743
No 10
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.86 E-value=1.4e-20 Score=110.30 Aligned_cols=104 Identities=27% Similarity=0.564 Sum_probs=85.5
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..|++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.......++.+.++.......++++
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICC 161 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeE
Confidence 36888999999999999999999999988888887765444679999999999997765666676666543334467789
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++|++|.+.+.+
T Consensus 162 ~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=1.3e-20 Score=109.72 Aligned_cols=101 Identities=47% Similarity=0.818 Sum_probs=84.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..|++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.......++.+.++.......++++
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEE
Confidence 36788999999999999999999999998888888765444679999999999997766677777776544334567899
Q ss_pred EEccccCCCChHHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~ 101 (106)
+++||++|.|++++|++|.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 999999999999999998754
No 12
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=1.9e-20 Score=110.05 Aligned_cols=101 Identities=35% Similarity=0.597 Sum_probs=83.4
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC-------c
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN-------L 73 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------~ 73 (106)
++|..|++++|++++|+|++++.+++....++..........+.|+++|+||+|+.+.....++.+.++... .
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CC
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccc
Confidence 368889999999999999999999999988888877654446799999999999987666777777765332 1
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHH
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
...+++++++||++|.|++++|+++.+.
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 2356799999999999999999999764
No 13
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=2.4e-20 Score=110.26 Aligned_cols=102 Identities=26% Similarity=0.569 Sum_probs=83.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC--------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN-------- 72 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------- 72 (106)
++|..|++++|++++|+|++++.++.....++.+++......+.|+++|+||+|+......+++.+.++...
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccc
Confidence 368899999999999999999999999998888887654446799999999999987666777777765321
Q ss_pred -c---CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 73 -L---KDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 73 -~---~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
. ....+++++|||++|.|++++|+++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1 12467899999999999999999998654
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=6.5e-21 Score=112.15 Aligned_cols=103 Identities=37% Similarity=0.675 Sum_probs=84.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC-------CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc-
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL-------RDAILVILANKQDMKNCMSVAEVHRALGLENL- 73 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~- 73 (106)
+|..|++++|++++|+|++++.++.....++..++..... .+.|+++|+||+|+.......++.+.++....
T Consensus 79 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 6788999999999999999999999998888887665322 27899999999999876666677666653322
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+..+++++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999988764
No 15
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=3.1e-21 Score=115.70 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=78.4
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++++.||++++++++|||++++.+|+.+..|+..+..... .+.|++||+||+|+.+. ....+..+... ..++
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~ 150 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNV 150 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTC
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCC
Confidence 3688999999999999999999999999998877655432 56899999999998653 34555544432 2356
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.|+++||++|.||+++|+.|++.+.
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999998764
No 16
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.3e-20 Score=108.24 Aligned_cols=103 Identities=39% Similarity=0.744 Sum_probs=84.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCC--CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++.....++..+...... .+.|+++|+||+|+.+.....++.+.+....+...+++
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH 162 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE
Confidence 5788999999999999999998999988888887776444 57899999999999876666777776653333345789
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 163 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999987753
No 17
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.4e-20 Score=115.36 Aligned_cols=105 Identities=50% Similarity=0.916 Sum_probs=91.2
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++|..|++++|++++|+|++++.++.....++...+......+.|+++|+||+|+.+.....++.+.++.......++++
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 303 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 303 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEE
Confidence 36788999999999999999999999999888888877655689999999999998777777888888766556678899
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++|++|.+.+.++
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 18
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=1.4e-19 Score=119.49 Aligned_cols=103 Identities=39% Similarity=0.810 Sum_probs=89.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|||++++.++.....++.+++......++|+++|+||+|+.+.....++.+.++........++++
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEE
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEE
Confidence 58889999999999999999999999998898888766556899999999999987777778888877655556678999
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|++++|++|.+.+.+
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 19
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=116.27 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=82.0
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHH---HHhcCcC-CCCCeEEEEeeC-CCCCCcCCHHHHHHHhCCCCcCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELL---AMLKEEE-LRDAILVILANK-QDMKNCMSVAEVHRALGLENLKD 75 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~p~ilv~nK-~D~~~~~~~~~~~~~~~~~~~~~ 75 (106)
|+|++||.++|++|||+|.+++...+ ...++. .++.+.. +.+.|++|.+|| .|++......++.+.++.... .
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l-~ 279 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-N 279 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-C
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC-C
Confidence 57999999999999999999886543 232222 3343322 367899999997 589888888999999987665 3
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+.+.+..|||.+|+|+.+.++||.+.+..+
T Consensus 280 r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 280 HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 789999999999999999999999987643
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.81 E-value=3.5e-19 Score=102.02 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=70.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+. ....+...... ..+++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 139 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCK 139 (166)
T ss_dssp --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCE
T ss_pred hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCc
Confidence 578899999999999999999999999888888776544467999999999998643 23333333321 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|+++.+.+.++
T Consensus 140 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 140 FIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988653
No 21
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=3.7e-19 Score=104.33 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=77.1
Q ss_pred chhhhhccCCeEEEEEECC------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSS------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 75 (106)
+|+.|++++|++++|+|++ +..++..+..|+.+.. ....+.|+++|+||+|+.......++.+.+. .
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~ 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----P 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----T
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH-----h
Confidence 5788999999999999999 4456666666665542 2235789999999999987777777777765 2
Q ss_pred Cce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 76 RTF-QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 76 ~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++ +++++||++|.|++++|+++.+.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 455 89999999999999999999988764
No 22
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.80 E-value=3.6e-19 Score=102.23 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=78.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 142 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCK 142 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCc
Confidence 567789999999999999999999999888888776544457999999999998642 34444443332 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|+++.+.+..+
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEecCccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988654
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=4.4e-19 Score=103.17 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=78.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.. .....+..+... ..++
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~ 155 (183)
T 3kkq_A 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNI 155 (183)
T ss_dssp SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCC
Confidence 367889999999999999999999998888777765543346789999999999865 334444443332 1236
Q ss_pred EEEEcccc-CCCChHHHHHHHHHHHhhc
Q psy12794 79 QIFKTSAK-EGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 79 ~~~~~sa~-~~~~v~~~~~~l~~~~~~~ 105 (106)
+++++||+ ++.|++++|+++.+.+.++
T Consensus 156 ~~~~~Sa~~~~~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 156 PYIETSAKDPPLNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp CEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHHhhC
Confidence 89999999 9999999999999988764
No 24
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=103.65 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=77.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+... ....+..+... ..+++
T Consensus 89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~ 163 (195)
T 3cbq_A 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCK 163 (195)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCE
T ss_pred hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCE
Confidence 567789999999999999999999998888877665433347899999999998643 34444444332 12468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+..
T Consensus 164 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 164 HIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 25
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.6e-19 Score=104.55 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=73.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
++.|++.++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+. ....+..... ...++++
T Consensus 105 ~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a-----~~~~~~~ 179 (211)
T 2g3y_A 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA-----VVFDCKF 179 (211)
T ss_dssp HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH-----HHcCCEE
Confidence 45678999999999999999999998877766554322347899999999998642 3333322221 1124689
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++|+++++.+..
T Consensus 180 ~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 180 IETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 26
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.79 E-value=6.8e-19 Score=102.60 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=77.5
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (106)
++|..|++++|++++|+|++++.++..+..++..+.......+.|+++|+||+|+.+.. ......+... ..+++
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 141 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-----SYGIP 141 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-----HHTCC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-----HcCCe
Confidence 36888999999999999999999999888877776664444579999999999987543 3333333221 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 142 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 142 FIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987753
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.3e-18 Score=100.83 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=78.4
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceE
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+... ....+..+... ..+++
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 153 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSML 153 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCE
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCE
Confidence 3678899999999999999999999888887777766544457899999999998543 33444444332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|+++++++|.+.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 154 FIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=99.39 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=73.1
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+. ....+...... ..++++
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~ 145 (175)
T 2nzj_A 71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKF 145 (175)
T ss_dssp HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEE
T ss_pred HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeE
Confidence 56788999999999999999999988877766655433357899999999998653 33333333221 124689
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++|+++.+.+.+
T Consensus 146 ~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 146 IETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.78 E-value=1.2e-18 Score=99.66 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=76.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+. ....+..+... ...+.+
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 142 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCA 142 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCc
Confidence 578899999999999999999898888877766655333357899999999998653 23444444332 112568
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++++++.+.+.
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 143 FLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 30
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.78 E-value=2.5e-18 Score=100.56 Aligned_cols=95 Identities=9% Similarity=0.172 Sum_probs=74.7
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC----cCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
|++++|++++|||++++.+++.+..|+..+.......+.|+++++||+|+.. .....+..+... ....++++
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~ 157 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYY 157 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEE
Confidence 7889999999999999999999888887776654335689999999999842 234444444432 11236899
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|++++|+++.+.+.+
T Consensus 158 e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 158 ETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 31
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.78 E-value=1.1e-18 Score=99.74 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=78.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 142 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVN 142 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCe
Confidence 578899999999999999999999888877777665433357899999999998643 33444444432 22468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|+++.+.+.++
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 168 (168)
T 1u8z_A 143 YVETSAKTRANVDKVFFDLMREIRAR 168 (168)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999988653
No 32
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=101.75 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=76.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce-
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF- 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~- 78 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ....++.+... ..++
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 167 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDIL 167 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCS
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCC
Confidence 57889999999999999999999988887776655432 256899999999998652 34445544432 2245
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++||++|.|++++|+++.+.+.+
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999988764
No 33
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=2.4e-18 Score=100.05 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=70.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 146 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIK 146 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCE
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCe
Confidence 57789999999999999999999998887776655431 246899999999998653 33444444332 22468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 147 ~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 147 FMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp EEECCC---CCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=1.7e-18 Score=100.47 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=76.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+... ....+..+... ..+++
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 144 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAA 144 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCE
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCc
Confidence 578899999999999999999999998888777766544457899999999998543 34444444432 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 145 ~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 145 FLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp EEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=3.6e-18 Score=98.84 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=77.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..++......+.|+++|+||+|+.+. ....+..... ...+++
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 147 (181)
T 2fn4_A 73 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVA 147 (181)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCe
Confidence 678899999999999999999999988887777655433457899999999998653 2333333332 123568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 148 ~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 148 YFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=3.2e-18 Score=99.49 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=78.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....++.+... ..+++
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 156 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVN 156 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCe
Confidence 578899999999999999999999888877777665443357899999999998653 34444544442 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|++++|++|.+.+.+
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 157 YVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 37
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.76 E-value=1e-17 Score=97.00 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=71.6
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHh--cCcCCCCCeEEEEeeCCCCCC----cCCHHHHHHHhCCCCcCCCc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAML--KEEELRDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~ 77 (106)
..|++++|++++|+|++++.++..+..|+..+. ......+.|+++|+||+|+.. .....+..+... ...+
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~ 142 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKR 142 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSS
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcC
Confidence 357899999999999999999998887543222 222224789999999999842 234444444332 1125
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++++||++|.|++++|+++.+.+.+
T Consensus 143 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 143 CSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 789999999999999999999987753
No 38
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=5e-18 Score=99.53 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=75.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 159 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLI 159 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCE
Confidence 57889999999999999999999988887776655432 247899999999998642 33444443332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 39
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.76 E-value=7.8e-18 Score=99.04 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=72.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+++.|++.+|++++|||++++.+|+....|+..+.......+.|+++|+||+|+... ....+..... ...+++
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a-----~~~~~~ 147 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXA-----VVFDXK 147 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHH-----HHhCCc
Confidence 567889999999999999999999988877655543222246899999999998642 2333322221 112458
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++|+++++.+.
T Consensus 148 ~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 148 FIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred eEEeccccCCCHHHHHHHHHHHHH
Confidence 999999999999999999998774
No 40
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=99.34 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=76.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.+. ....+..+... ...+.+
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~ 165 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMR 165 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCe
Confidence 477899999999999999999999888766544332 22247899999999998643 33444444432 113568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhcC
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKHL 106 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~~ 106 (106)
++++||++|.|++++|+++.+.+.+++
T Consensus 166 ~~~~SA~~g~gi~~l~~~l~~~i~~~~ 192 (192)
T 2il1_A 166 FCEASAKDNFNVDEIFLKLVDDILKKM 192 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999887653
No 41
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=101.14 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=75.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+... ....+..+... ..+++
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 162 (201)
T 3oes_A 88 LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGAT 162 (201)
T ss_dssp CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCe
Confidence 578899999999999999999999999888887776544457899999999998643 23333333221 23458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 163 FMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 42
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=9.3e-19 Score=107.15 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=67.3
Q ss_pred cCCeEEEEEECCCc--chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 9 NTDAIIYVVDSSDR--DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 9 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
++|++++|+|++++ .+++.+..|+..+.......+.|+++|+||+|+.......+..+... ...+++++++||+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk 237 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSAR 237 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECC
Confidence 89999999999998 89998888777665432224689999999999864322233333322 1135689999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy12794 87 EGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~~~ 103 (106)
+|.|++++|+++.+.+.
T Consensus 238 ~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 238 SNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999998764
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=5.9e-18 Score=100.89 Aligned_cols=98 Identities=12% Similarity=0.237 Sum_probs=76.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+... ....+..+... ..+++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 174 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIP 174 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCc
Confidence 477899999999999999999999888877766554433357899999999998653 23344444332 22468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|++++++++.+.+.+
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.76 E-value=2e-18 Score=99.02 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+|..+++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+... ..++++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 141 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPF 141 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCE
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeE
Confidence 57889999999999999999988888877776655432 246899999999998543 23333333321 124589
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++++++.+.+.++
T Consensus 142 ~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 142 IESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=98.07 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=76.0
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+... ..++
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~ 153 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGI 153 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTC
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCC
Confidence 367889999999999999999999988887766554432 247899999999998643 23333333322 2345
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++++||++|.|++++|+++.+.+.++
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999988654
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=99.89 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=77.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....++.+... ..+++
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 152 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVN 152 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCe
Confidence 577899999999999999999999988887777665433357899999999998653 33444444432 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+..
T Consensus 153 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 153 YVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987753
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=5.6e-18 Score=98.96 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=76.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....++.+... ..+++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 160 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIP 160 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCC
Confidence 467889999999999999999999888877776655433357899999999998652 33344443332 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|+++++++|.+.+.+
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 48
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=7.5e-18 Score=98.77 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=75.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ....+...... ..+++
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 161 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAE-----QLGFD 161 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCe
Confidence 5778999999999999999999998888776665442 2357899999999998643 23333333221 22458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|+++.+.+.++
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 162 FFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999988654
No 49
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.4e-18 Score=100.58 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=76.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+... ....+..+... ..+++
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 165 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACA 165 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSE
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCe
Confidence 578899999999999999999999888877666554333357899999999998652 33344433332 12468
Q ss_pred EEEccccCCC-ChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGE-GLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~-~v~~~~~~l~~~~~~ 104 (106)
++++||++|. |++++|+++.+.+.+
T Consensus 166 ~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 166 FYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp EEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred EEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 9999999999 999999999988754
No 50
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.75 E-value=1.8e-17 Score=98.13 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=75.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 146 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMP 146 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCC
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCe
Confidence 57889999999999999999999998887776654432 246899999999998653 23344443332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 51
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=97.22 Aligned_cols=98 Identities=12% Similarity=0.225 Sum_probs=76.8
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+...... ..++
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~ 162 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGL 162 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTC
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCC
Confidence 367889999999999999999999888887776665432 257899999999998653 23444444332 2356
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++||++|.|++++++++.+.+.+
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 163 LFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999987754
No 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=1.4e-17 Score=96.23 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 153 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLL 153 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence 47789999999999999999989888877766554432 246899999999998642 33444444432 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999988754
No 53
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.75 E-value=1.6e-17 Score=97.11 Aligned_cols=98 Identities=16% Similarity=0.308 Sum_probs=75.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 160 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFE 160 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCe
Confidence 5788999999999999999998998887776655442 2247899999999998653 23333333322 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++++++.+.+.++
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 54
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.75 E-value=5.5e-18 Score=96.60 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=75.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+|..|++++|++++|+|++++.++.....|+..+.......+.|+++++||+|+.+. ....+..+... ..++++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 141 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPY 141 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeE
Confidence 467899999999999999999888888777766554433347899999999998653 23333333321 124589
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++++++.+.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 142 IETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 55
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=1.7e-17 Score=96.17 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=75.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+. ....++.+... ..+++
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 150 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLF 150 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCE
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCE
Confidence 57789999999999999999999988887776665432 247899999999998643 33444444432 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++++++.+.+.
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 151 FMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp EEECCSSSCTTHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 56
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=7.3e-18 Score=98.96 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=72.7
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR 76 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~ 76 (106)
++|..|++++|++++|+|++++.++..+...+...+... ..+.|+++|+||+|+... ....+..+... ..
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~ 159 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KL 159 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HH
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hc
Confidence 367889999999999999999999988743333333321 246899999999998642 33444443332 12
Q ss_pred ceE-EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQ-IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~-~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++. ++++||++|.|++++|+++.+.+.+
T Consensus 160 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 160 GCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 334 9999999999999999999998764
No 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.74 E-value=9e-18 Score=98.22 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=73.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 160 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMP 160 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCC
T ss_pred hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCE
Confidence 678899999999999999999999888887777665433457899999999998643 23333333322 23458
Q ss_pred EEEccccCC---CChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEG---EGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~---~~v~~~~~~l~~~~~~ 104 (106)
++++||+++ .|++++|.+|.+.+.+
T Consensus 161 ~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 161 LFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp EEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred EEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999999 9999999999887753
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.74 E-value=1.4e-17 Score=99.37 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=75.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. .......+.. ...+++
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 150 (218)
T 4djt_A 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYE 150 (218)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCc
Confidence 67889999999999999999999888877666554332 145899999999998653 2333444433 334678
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 151 ~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 151 YFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 59
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=98.16 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=75.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+... ..+++
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 163 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELM 163 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCE
Confidence 57889999999999999999999988887776654422 146899999999998642 33344444332 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 60
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=5.8e-18 Score=101.09 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=73.7
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHH-HHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGI-SKEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH 65 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~ 65 (106)
++|..|++++|++++|||++++.++.. ...|+..+... ..+.|+++|+||+|+.+. ....+..
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 368889999999999999999999998 45555554433 147899999999998642 3333333
Q ss_pred HHhCCCCcCCCce-EEEEccccCCCC-hHHHHHHHHHHHhh
Q psy12794 66 RALGLENLKDRTF-QIFKTSAKEGEG-LNDSMDWLSNALQK 104 (106)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~sa~~~~~-v~~~~~~l~~~~~~ 104 (106)
+... ..++ +++++||++|.| ++++|+++.+.+..
T Consensus 168 ~~~~-----~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 168 AIAK-----QLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHH-----HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 3322 2245 899999999998 99999999988754
No 61
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=7.1e-18 Score=96.65 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=74.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----CCHHHHHHHhCCCCcCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----MSVAEVHRALGLENLKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~ 76 (106)
+|..|++++|++++|+|++++.++.....|+..+.... ..+.|+++++||+|+... .......+... ..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~ 141 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EK 141 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HH
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-----Hc
Confidence 57889999999999999999999988887776665432 247899999999998643 22233333221 23
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++++||++|.|++++|+++.+.+.+
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 142 GLLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999887654
No 62
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-17 Score=96.58 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=72.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... ....+..+... ..+++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 149 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLP 149 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCC
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCe
Confidence 577889999999999999999888888777766554322 56899999999998643 23333333321 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 150 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 150 FMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.74 E-value=1.1e-17 Score=96.87 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=73.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc---CCCCCeEEEEeeCCCCCCc---CCHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE---ELRDAILVILANKQDMKNC---MSVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~ 75 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+... ....+..+... ..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~ 149 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SL 149 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HT
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hc
Confidence 57788999999999999999999888877766655422 1246899999999998532 23444444332 12
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.+.+++++||++|.|++++|+++.+.+.+
T Consensus 150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 150 GDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999987754
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=1.2e-17 Score=95.65 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ....+..+... ..+++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 144 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLL 144 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCe
Confidence 57889999999999999999999988887776665432 247899999999998642 33344444332 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++++++.+.+.
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTSC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=1.1e-17 Score=98.85 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCC---cCCHHHHHHHhCCCCcCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKN---CMSVAEVHRALGLENLKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~ 76 (106)
+|..|++++|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+ .....+..+... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~ 163 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TN 163 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HT
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----Hc
Confidence 467889999999999999999999988887776655322 24789999999999865 233444444432 23
Q ss_pred ceEEEEccccC-CCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKE-GEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~-~~~v~~~~~~l~~~~~~ 104 (106)
+++++++||++ |.|++++|+++.+.+.+
T Consensus 164 ~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 164 TLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp TCEEEECCC-------CHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 46899999999 99999999999987653
No 66
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.7e-17 Score=97.40 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=76.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....++.+... ..+++
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 161 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAI 161 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCE
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence 5778999999999999999999999888777665443 224689999999999864 234455555443 23578
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 162 VVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987643
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=95.80 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=74.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+. ....+...... ..+++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 146 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQ 146 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCC
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCe
Confidence 5788999999999999999999999888777766543 246899999999998653 23333333221 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987753
No 68
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=99.11 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=74.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 164 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMY 164 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCE
Confidence 47789999999999999999999988877776554321 246899999999998642 33344433321 22468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 69
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=2.7e-17 Score=94.99 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=76.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc---CCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE---ELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 77 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+... ....++.+... ...+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~ 147 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGD 147 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTC
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCC
Confidence 47789999999999999999988888777666554321 1246899999999998642 34445554443 1235
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
.+++++||++|.|++++|+++.+.+.++
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999987653
No 70
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.74 E-value=7.8e-18 Score=96.63 Aligned_cols=97 Identities=23% Similarity=0.274 Sum_probs=73.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 144 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAK 144 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCe
Confidence 56778999999999999999999988887766544321 146899999999998652 34444444432 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 71
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.74 E-value=9.1e-18 Score=96.11 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=75.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++....|+..+.... .+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 142 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLR 142 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCe
Confidence 57789999999999999999988888877776665432 46899999999998642 23444443332 22468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||+++.|++++++++.+.+.++
T Consensus 143 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 143 FYRTSVKEDLNVSEVFKYLAEKHLQK 168 (168)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999887653
No 72
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.8e-17 Score=99.36 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=73.9
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
++|..|++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ....+..+... ..++
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~ 150 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQL 150 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTC
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCC
Confidence 367889999999999999999999998887776654432 246899999999998642 33444444332 2346
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++++||+++.|++++|+++.+.+.++
T Consensus 151 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 151 LFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp EEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999887643
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.74 E-value=2.1e-17 Score=97.11 Aligned_cols=96 Identities=23% Similarity=0.343 Sum_probs=76.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-cCCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-CMSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+|..|++++|++++|+|++++.++.....|+..+... .+.|+++|+||+|... .....++.+.+. ..++++
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~ 180 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYAQ-----DNNLLF 180 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHHH-----HTTCEE
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHHH-----HcCCcE
Confidence 5788999999999999999999998888777776554 3489999999999432 234455555543 235699
Q ss_pred EEccccCCCChHHHHHHHHHHHhhc
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++||++|.|++++++++.+.+.++
T Consensus 181 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 181 IQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 74
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.74 E-value=2.1e-17 Score=96.20 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=74.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+... ..+++
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 148 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELM 148 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence 47789999999999999999999988887765544321 257899999999998642 33344444332 23568
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|+++.+.+.+
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 149 FLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 75
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=2.7e-17 Score=95.06 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCe-EEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAI-LVILANKQDMKNC--MSVAEVHRALGLENLKDR 76 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~ 76 (106)
++|..|++++|++++|+|++++.+++.+..|+..+..... ..+.| +++|+||+|+.+. ....+..+... ..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~ 145 (178)
T 2hxs_A 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----EN 145 (178)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HH
T ss_pred chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----Hc
Confidence 3688999999999999999999898887766655443110 01344 8999999998642 33344433322 12
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++++||++|.|++++|+++.+.+.+
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999988754
No 76
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=2.8e-17 Score=97.03 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=74.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 146 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFE 146 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCE
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCe
Confidence 4778999999999999999999998888776665442 2246899999999998653 23333333322 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++|++|.+.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 77
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.73 E-value=7.2e-18 Score=107.35 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=81.5
Q ss_pred CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKN------------- 57 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------- 57 (106)
++|.+||++++++|||+|+++ ..++.+...++..+..+....+.|++|++||+|+..
T Consensus 208 ~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp 287 (353)
T 1cip_A 208 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYP 287 (353)
T ss_dssp GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCT
T ss_pred HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhccc
Confidence 479999999999999999998 578999998998888776667899999999999842
Q ss_pred ----cCCHHHHHHHhC-----CCCc-CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 58 ----CMSVAEVHRALG-----LENL-KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 58 ----~~~~~~~~~~~~-----~~~~-~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.....+..+.+. .... ...++.+++|||+++.||.++|.++.+.+.+
T Consensus 288 ~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 288 EYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp TCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 123444444332 1100 1356899999999999999999999987754
No 78
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.73 E-value=1.3e-17 Score=97.53 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=71.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+|..|++++|++++|+|++++.++.++..|+..+.......+.|+++|+||+|+... ....++.+... ..++++
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 159 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPF 159 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeE
Confidence 577899999999999999999888888776665544322346899999999998653 33344443332 124589
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++++++.+.+.+
T Consensus 160 ~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 160 IETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987754
No 79
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.3e-17 Score=98.55 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=75.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc---CCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE---ELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 77 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+... ....+..+... ...+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 148 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNN 148 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTS
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCC
Confidence 57789999999999999999988888877766554422 1236899999999998643 33444444332 1245
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++++||++|.|+++++++|.+.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999987753
No 80
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.1e-17 Score=96.21 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=71.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH 65 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~ 65 (106)
++|..|++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+... ....+..
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 36788999999999999999999998886 455444332 137899999999998652 2222222
Q ss_pred HHhCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 66 RALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+... ..+. +++++||++|.|++++|+++.+.+.
T Consensus 159 ~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 159 KLAK-----EIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHH-----HHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHH-----HcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2221 1123 7999999999999999999998764
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-17 Score=98.78 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=73.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..+... ..++++
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 158 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPF 158 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEE
Confidence 57889999999999999999988888777766654432 246899999999998533 23333333221 123589
Q ss_pred EEccccCCCChHHHHHHHHHHHhh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++||++|.|++++++++.+.+.+
T Consensus 159 ~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 159 IESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987754
No 82
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=96.73 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=71.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH 65 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~ 65 (106)
++|..|++++|++++|+|++++.++..+. .|+..+.... .+.|+++|+||+|+... ....+..
T Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 160 (201)
T 2q3h_A 83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK 160 (201)
T ss_dssp SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHH
Confidence 36888999999999999999999998886 4554443321 37899999999998642 1222222
Q ss_pred HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.... ..+ .+++++||++|.|++++|+++.+.+.
T Consensus 161 ~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 161 LLAE-----EIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHH-----HHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHH-----hcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 2221 112 38999999999999999999998775
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=98.00 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=71.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC--------cCCHHHHHHHhCCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN--------CMSVAEVHRALGLENL 73 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------~~~~~~~~~~~~~~~~ 73 (106)
+|..|++++|++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....+..+...
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~---- 167 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM---- 167 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH----
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHH----
Confidence 4678899999999999999999998887766554332 124689999999999852 122233332221
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
..+++++++||++|.|++++|.++.+.+.++
T Consensus 168 -~~~~~~~~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 168 -TYGALFCETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp -HHTCEEEECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred -HcCCeEEEeeCCCCCCHHHHHHHHHHHHHhh
Confidence 2246899999999999999999999988654
No 84
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.72 E-value=5.9e-18 Score=101.27 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=74.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+|..|++++|++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+..+.. ...+++++
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 152 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYY 152 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHH-----HHHTCEEE
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHH-----HHcCCEEE
Confidence 57889999999999999999999998887777766542 478999999999986543211111111 22346899
Q ss_pred EccccCCCChHHHHHHHHHHHhh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++||++|.|++++|+++.+.+..
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 85
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=9e-18 Score=95.88 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=75.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 141 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCP 141 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSC
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCC
Confidence 577899999999999999999999888877777665433357999999999998643 23333333321 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 142 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 142 FMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999988753
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.72 E-value=1.6e-17 Score=98.50 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=69.3
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VAEVHR 66 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~~~~~ 66 (106)
++|..|++++|++++|+|++++.++.+....+...+.... .+.|+++|+||+|+.+... ..+...
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 3678899999999999999999999988733333333222 4789999999999865321 112211
Q ss_pred HhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
... .....+++++||++|.|++++|+++.+.+
T Consensus 172 ~~~----~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAK----EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHH----HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHH----hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 111 11224799999999999999999998754
No 87
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=6.7e-17 Score=92.62 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=73.7
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 144 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAI 144 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCE
Confidence 5678899999999999999998888887766555432 2357899999999998643 23333333332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++++++.+.+.
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 88
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.71 E-value=7.2e-17 Score=95.33 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=69.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHRA 67 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~~ 67 (106)
+|..|++++|++++|+|++++.++......+...+... ..+.|+++|+||+|+.+.. ...+..+.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 67889999999999999999989988843333333321 1478999999999986531 11122221
Q ss_pred hCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 68 LGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 68 ~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.. ..+. +++++||++|.|++++++++.+.+.
T Consensus 168 ~~-----~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 168 AN-----RISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HH-----HTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HH-----hCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 11 1123 8999999999999999999998764
No 89
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.71 E-value=3.5e-17 Score=104.52 Aligned_cols=104 Identities=16% Similarity=0.294 Sum_probs=79.4
Q ss_pred CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKN------------- 57 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------- 57 (106)
++|.+||++++++|||+|+++ ..++.+...++.....+....+.|+++++||+|+.+
T Consensus 216 ~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp 295 (362)
T 1zcb_A 216 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFL 295 (362)
T ss_dssp --CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCT
T ss_pred hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCc
Confidence 479999999999999999998 789999998898888775557899999999999752
Q ss_pred ----c-CCHHHHHHHh-----CCCCcC-CCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 58 ----C-MSVAEVHRAL-----GLENLK-DRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 58 ----~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
. ....+..+.+ ...... ..++.++++||+++.||.++|.++.+.+.+
T Consensus 296 ~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 296 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 1 3344544433 111111 346789999999999999999999987753
No 90
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=97.03 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=74.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
+..|++++|++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+... ....+..+... ..++
T Consensus 85 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~ 159 (187)
T 3c5c_A 85 CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGC 159 (187)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTC
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCC
Confidence 35689999999999999999999998877766554311 146899999999998642 33444444332 2246
Q ss_pred EEEEccc-cCCCChHHHHHHHHHHHhhc
Q psy12794 79 QIFKTSA-KEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 79 ~~~~~sa-~~~~~v~~~~~~l~~~~~~~ 105 (106)
+++++|| ++|.|++++|+++.+.+.++
T Consensus 160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 160 LFFEVSACLDFEHVQHVFHEAVREARRE 187 (187)
T ss_dssp EEEECCSSSCSHHHHHHHHHHHHHHHC-
T ss_pred cEEEEeecCccccHHHHHHHHHHHHhhC
Confidence 8999999 89999999999999988653
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=2.3e-17 Score=98.00 Aligned_cols=97 Identities=8% Similarity=0.077 Sum_probs=70.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----------CHHHHHHHhC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM----------SVAEVHRALG 69 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------~~~~~~~~~~ 69 (106)
++|..|++++|++++|+|++++.++..+. .|+..+... . .+.|+++|+||+|+.... ...+..+...
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-A-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 36788999999999999999999998876 455444332 1 378999999999986431 2333333221
Q ss_pred CCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 70 LENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 70 ~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+ .+++++||++|.|++++|+++.+.+.+
T Consensus 150 -----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 150 -----QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp -----HHTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred -----HcCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 112 389999999999999999999987753
No 92
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.3e-16 Score=94.63 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL-------- 73 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-------- 73 (106)
+|..|++++|++++|+|++++.++......+...+... ..+.|+++|+||+|+.......+....+.....
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 57889999999999999999988888743333333321 147899999999998643211111111110000
Q ss_pred -CCCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 74 -KDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 74 -~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
...+. +++++||++|.|++++++++.+.+.+
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 01123 89999999999999999999988754
No 93
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=3.1e-17 Score=95.09 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=70.7
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC------------CHHHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM------------SVAEVHRA 67 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~ 67 (106)
++|..+++++|++++|+|++++.+++.+. .|+..+... . .+.|+++|+||+|+.+.. ...+..+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-A-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 36788999999999999999999998887 344443332 1 368999999999985432 22222222
Q ss_pred hCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 68 LGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 68 ~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.. ..+ .+++++||++|.|++++|+++.+.+.
T Consensus 149 ~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 149 KK-----LIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HH-----HHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HH-----HcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 21 113 38999999999999999999998764
No 94
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.70 E-value=4.3e-17 Score=95.03 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~ 66 (106)
+|..|++++|++++|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+... ....+..+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 578899999999999999999999887 4444443322 146899999999998632 22233333
Q ss_pred HhCCCCcCCCceEEEEcccc-CCCChHHHHHHHHHHHhhc
Q psy12794 67 ALGLENLKDRTFQIFKTSAK-EGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~-~~~~v~~~~~~l~~~~~~~ 105 (106)
... .....+++++||+ ++.|++++|+.+.+.+.++
T Consensus 149 ~~~----~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 149 MAK----QIGAATYIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp HHH----HHTCSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred HHH----HcCCcEEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 221 0112589999999 6899999999999887653
No 95
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=3.2e-17 Score=94.67 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=74.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 152 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVM 152 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCE
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCe
Confidence 57788999999999999999988888887776655432 146899999999998643 23334333332 12468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+.+
T Consensus 153 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 153 FIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 96
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.70 E-value=6.8e-17 Score=93.86 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=70.8
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVH 65 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~ 65 (106)
++|..|++++|++++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.... ...+..
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 145 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 145 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-S-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh-C-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHH
Confidence 36788999999999999999999998886 444444332 1 378999999999986431 112222
Q ss_pred HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+... ..+ .+++++||++|.|++++|+++.+.+..
T Consensus 146 ~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 146 AMAK-----EIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHH-----HTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHH-----hcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 2211 123 389999999999999999999988753
No 97
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.1e-17 Score=97.07 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCc-CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNC-MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..+++++|++++|+|++++.++.....++..+..... ..+.|+++|+||+|+... ....+...... ..+++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~ 146 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCA 146 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCE
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCe
Confidence 577899999999999999998888877765544333111 136899999999998653 23333333221 12458
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++++.+.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 147 FMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 98
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=96.07 Aligned_cols=96 Identities=6% Similarity=0.080 Sum_probs=65.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--------------CHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCM--------------SVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------------~~~~~~~ 66 (106)
+|..|++++|++++|+|++++.+++.+. .|+..+... ..+.|+++|+||+|+.... ...+..+
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 5778899999999999999999998886 444443322 1468999999999986532 1122222
Q ss_pred HhCCCCcCCCce-EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 67 ALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 67 ~~~~~~~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
... ..+. +++++||++|.|++++|+++.+.+.+
T Consensus 176 ~~~-----~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 176 MAR-----SVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHH-----HTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHH-----hcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 221 1233 89999999999999999999988754
No 99
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.69 E-value=1.7e-17 Score=105.70 Aligned_cols=104 Identities=18% Similarity=0.339 Sum_probs=77.4
Q ss_pred CchhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----C-------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----M------- 59 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~------- 59 (106)
++|.+||++++++|+|+|++ +..++.+...++..+.......+.|+++++||+|+.+. .
T Consensus 198 ~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~ 277 (354)
T 2xtz_A 198 RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEW 277 (354)
T ss_dssp GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGG
T ss_pred HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccc
Confidence 47999999999999999998 77899999988988877655567999999999997421 0
Q ss_pred ------------CHHHHHHHhCC-----------CCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 60 ------------SVAEVHRALGL-----------ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 60 ------------~~~~~~~~~~~-----------~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
...+..+.+.. .......+.+++|||++++||.++|.++.+.+.+
T Consensus 278 fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 278 FRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp GTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 01222222110 0000234677999999999999999999987753
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.69 E-value=4.4e-16 Score=92.59 Aligned_cols=100 Identities=25% Similarity=0.348 Sum_probs=66.8
Q ss_pred chhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC---------
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRALG--------- 69 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~--------- 69 (106)
+|..|++++|++++|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.......++.+.+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 5788999999999999998743 455555555554432 1124689999999999976544332222111
Q ss_pred --------------CCCcC---------C--CceEEEEccccCC------CChHHHHHHHHHH
Q psy12794 70 --------------LENLK---------D--RTFQIFKTSAKEG------EGLNDSMDWLSNA 101 (106)
Q Consensus 70 --------------~~~~~---------~--~~~~~~~~sa~~~------~~v~~~~~~l~~~ 101 (106)
..... . ..+++++|||++| .|++++|++|.+.
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00000 1 1678999999999 9999999999875
No 101
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=8.3e-17 Score=95.59 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHH-HHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHHH
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVHR 66 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~~ 66 (106)
+|..|++++|++++|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+... ....+..+
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 577899999999999999999999887 4454444332 146899999999998632 22233333
Q ss_pred HhCCCCcCCCceEEEEcccc-CCCChHHHHHHHHHHHhhc
Q psy12794 67 ALGLENLKDRTFQIFKTSAK-EGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 67 ~~~~~~~~~~~~~~~~~sa~-~~~~v~~~~~~l~~~~~~~ 105 (106)
... .....+++++||+ ++.|++++|+.+.+.+.++
T Consensus 170 ~~~----~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 170 MAK----QIGAATYIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp HHH----HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHH----HcCCCEEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 221 0012589999999 6899999999999887653
No 102
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=1.4e-16 Score=99.66 Aligned_cols=90 Identities=24% Similarity=0.286 Sum_probs=67.9
Q ss_pred CchhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH---HHHHHHhCCCCcCCC
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDR 76 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 76 (106)
++|+.||+++|++++|+|++++. ++..+..|+..... .++|+++|+||+|+.+.... .+..+.+. ..
T Consensus 76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~ 146 (301)
T 1u0l_A 76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL 146 (301)
T ss_dssp EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT
T ss_pred eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh
Confidence 36889999999999999999886 67777777665432 47899999999998653221 12223332 11
Q ss_pred ceEEEEccccCCCChHHHHHHHHH
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
++++++||++|.|++++|..+..
T Consensus 147 -~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 147 -YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp -SCEEECCTTTCTTHHHHHHHHSS
T ss_pred -CcEEEEECCCCcCHHHHHHHhcC
Confidence 68999999999999999987653
No 103
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.68 E-value=2e-16 Score=99.70 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=80.5
Q ss_pred CchhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-------------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN------------- 57 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------- 57 (106)
++|.+||++++++|+|+|++ +..++.+...++.....+....+.|+++++||+|+.+
T Consensus 182 ~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp 261 (327)
T 3ohm_A 182 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFP 261 (327)
T ss_dssp TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCT
T ss_pred HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhch
Confidence 57999999999999999654 6778999888898888876667899999999999743
Q ss_pred -----cCCHHHHHHHhC-----CCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 58 -----CMSVAEVHRALG-----LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 58 -----~~~~~~~~~~~~-----~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+.++..+.+. .......++.++++||+++.||..+|..+.+.+.+
T Consensus 262 ~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 262 EYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp TCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 123344433321 11113456889999999999999999999988764
No 104
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=6.3e-17 Score=95.26 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=67.5
Q ss_pred hhhhccCCeEEEEEECCCc--chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----CHHHH----HHHhCCCCc
Q psy12794 4 RCYYSNTDAIIYVVDSSDR--DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM----SVAEV----HRALGLENL 73 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~----~~~~~~~~~ 73 (106)
..|++++|++++|+|++++ .++..+..|+.+.... ..+.|+++|+||+|+.... ...++ .+.+.....
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 7899999999999999987 5556665556554322 2478999999999976421 11112 111211111
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
...+++++++||++ .|++++|+.+++.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 24578999999999 99999999998865
No 105
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=97.73 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=65.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..|++++|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.... ...+..+.. ...+++
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 171 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIP 171 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHH-----HTTTCC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHH-----HHcCCe
Confidence 5778999999999999999999999988877666443 22478999999999986431 111111111 123467
Q ss_pred EEEccccCCCChHHHHHHHHHHHhhc
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQKH 105 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~~ 105 (106)
++++||++|.|++++|++|.+.+.++
T Consensus 172 ~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 172 FLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp BCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 106
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=8.2e-17 Score=92.34 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=71.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCce
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (106)
+|..+++++|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+. ....+...... ..++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~ 141 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKC 141 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTC
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCC
Confidence 47788999999999999999988887776665444321 1246899999999998643 23333332221 1245
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++||++|.|++++++++.+.+.+
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 142 AFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred eEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999999999987653
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.66 E-value=1.8e-16 Score=102.19 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=77.9
Q ss_pred CchhhhhccCCeEEEEEECCC----------cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-----C------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSD----------RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-----M------ 59 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~------ 59 (106)
++|.+||++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|+... .
T Consensus 232 ~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~ 311 (402)
T 1azs_C 232 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDY 311 (402)
T ss_dssp GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGT
T ss_pred hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhc
Confidence 479999999999999999998 8899999999988887655568999999999997321 0
Q ss_pred ---------------------CHHHHHHHh----C-C---CCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 60 ---------------------SVAEVHRAL----G-L---ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 60 ---------------------~~~~~~~~~----~-~---~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
...+....+ . . .......+.++++||+++.||.++|..+.+.+.+
T Consensus 312 fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 312 FPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 011222211 0 0 0001135788999999999999999999887653
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=7.9e-16 Score=90.14 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=68.4
Q ss_pred chhhhhccC---CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcC
Q psy12794 2 YWRCYYSNT---DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLK 74 (106)
Q Consensus 2 ~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~ 74 (106)
+|..|++++ |++++|+|++++.++.+.. +...+.. .+.|+++|+||+|+.+.... .++.+.+. .
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~ 165 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----I 165 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----C
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----c
Confidence 366777777 9999999999877776543 2233332 46899999999998764333 23444343 2
Q ss_pred CCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 75 DRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
..+.+++++||++|.|++++++++.+.+.
T Consensus 166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 166 DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 34679999999999999999999998774
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.64 E-value=7.6e-16 Score=96.67 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=70.6
Q ss_pred CchhhhhccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcCCCCCeEEEEeeCCCCCCc--------------CCHHHHH
Q psy12794 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNC--------------MSVAEVH 65 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------------~~~~~~~ 65 (106)
++|..|++++|++++|+|++++.++..+. .|+..+... . .++|+++|+||+|+... ....+..
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh-C-CCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 35788999999999999999999998876 344333322 1 37899999999998542 1122222
Q ss_pred HHhCCCCcCCCc-eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 66 RALGLENLKDRT-FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+... ..+ .+++++||++|.|++++|+++.+.+..
T Consensus 296 ~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 296 AMAK-----EIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHH-----HTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHH-----HcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 2221 123 389999999999999999999988754
No 110
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.63 E-value=3e-16 Score=91.52 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=70.7
Q ss_pred chhhhhccCCeEEEEEECCCc-chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDR-DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDR 76 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 76 (106)
+|+.|+++++++++|+|++++ .+++.+..|+.++.... .+.|+++|+||+|+.+..... +..+.+. ...
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~ 145 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKR 145 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCT
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----Hhc
Confidence 577889999999999999987 47888877776654431 368999999999986532211 1222332 222
Q ss_pred ce----EEEEccccCCC-ChHHHHHHHHHHHhh
Q psy12794 77 TF----QIFKTSAKEGE-GLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~----~~~~~sa~~~~-~v~~~~~~l~~~~~~ 104 (106)
++ +++++||+++. |++++++.+.+.+.+
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 33 49999999997 999999999887753
No 111
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.41 E-value=3.6e-17 Score=96.73 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=68.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH---------HHHHHhCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA---------EVHRALGLEN 72 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---------~~~~~~~~~~ 72 (106)
+|..|++++|++++|+|++++.++......+...+.... .+.|+++|+||+|+.+..... .+........
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 577889999999999999999888887633333333211 278999999999986432110 1111111111
Q ss_pred cCCCce-EEEEccccCCCChHHHHHHHHHHH
Q psy12794 73 LKDRTF-QIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 73 ~~~~~~-~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
....+. +++++||++|.|++++|+++.+.+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 122344 899999999999999999998754
No 112
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=1.2e-15 Score=89.22 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=64.5
Q ss_pred chhhhhccC---CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----HHHHhCCCCcC
Q psy12794 2 YWRCYYSNT---DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----VHRALGLENLK 74 (106)
Q Consensus 2 ~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~ 74 (106)
+|..|++++ |++++|+|.+++.+..... +...+.. .+.|+++|+||+|+.+...... +.+.+. .
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~ 164 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS----K 164 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH----S
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHh----h
Confidence 356677776 8999999998764443322 2223332 3689999999999865433322 233332 2
Q ss_pred CCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 75 DRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 75 ~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
...++++++||++|.|++++|+++.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 234689999999999999999999998764
No 113
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.61 E-value=1.8e-14 Score=83.07 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=66.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCC--cCCC--c
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLEN--LKDR--T 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~--~ 77 (106)
+|..+++++|++++|+|++++....... .+... .. .+.|+++|+||+|+... ...++.+.+.... .... .
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~-~~---~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVE-AINHA-KA---ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGD 144 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHH-HHHHH-GG---GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSS
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHH-Hh---CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCc
Confidence 4667889999999999998754333222 23222 22 46899999999998753 3344444443211 1122 2
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++++||++|.|++++++++.+.+..
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 789999999999999999999987753
No 114
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.60 E-value=5e-16 Score=98.30 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=78.2
Q ss_pred CchhhhhccCCeEEEEEECC----------CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc------------
Q psy12794 1 PYWRCYYSNTDAIIYVVDSS----------DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC------------ 58 (106)
Q Consensus 1 ~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------ 58 (106)
++|.+||++++++|||+|++ +..++.+...++.....+....+.|+++++||+|+...
T Consensus 176 ~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp 255 (340)
T 4fid_A 176 KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFP 255 (340)
T ss_dssp HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCT
T ss_pred ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhh
Confidence 37999999999999999998 77889999989988888766678999999999997431
Q ss_pred -----CCHHHHHH----Hh-------CCCCcCC-----------CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 59 -----MSVAEVHR----AL-------GLENLKD-----------RTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 59 -----~~~~~~~~----~~-------~~~~~~~-----------~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
...++..+ .+ ....... ..+.++++||+++.||..+|..+.+.+.
T Consensus 256 ~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 256 EYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp TCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHH
Confidence 12223222 22 1110111 3588999999999999999999988764
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.58 E-value=2.9e-15 Score=90.07 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=64.1
Q ss_pred hhhhccCCeEEEEEECCCcchHH--HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHH---HHHHHhCCCCcCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIG--ISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVA---EVHRALGLENLKDR 76 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~---~~~~~~~~~~~~~~ 76 (106)
..++..+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+.+. .... ...+.... ...
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 177 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---VKN 177 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH---CCS
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh---cCC
Confidence 45678899999999999887654 222334443322 137899999999998653 2221 12222210 001
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.++++++||++|.|++++|+++.+.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2789999999999999999999987753
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.57 E-value=5e-15 Score=93.27 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=65.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcC--
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMS----VAEVHRALGLENLK-- 74 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~-- 74 (106)
++.||++++++|+|||++++ +.+...++.+++.. ....+.|+++++||+|+..... ..++.+..+....+
T Consensus 66 ~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 66 SERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 48899999999999999987 33333333332211 0124789999999999865321 12333322211112
Q ss_pred --CCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 75 --DRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 75 --~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..++.|+++||++ .||.++|..+++.+.+
T Consensus 144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred ccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 2578999999998 5999999999876543
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.54 E-value=3.8e-15 Score=86.15 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=62.4
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
.+++++|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+.+... + .....+.+++++|
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----~-----~~~~~~~~~~~~S 146 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-----G-----MSEVNGHALIRLS 146 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----E-----EEEETTEEEEECC
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-----h-----hhhccCCceEEEe
Confidence 36899999999999998877653 3344443332 124689999999999853210 0 0112356899999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q psy12794 85 AKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~ 103 (106)
|++|.|++++|+++.+.+.
T Consensus 147 A~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999988764
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.53 E-value=1.1e-14 Score=82.75 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=61.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIF 81 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (106)
|..+++++|++++|+|.+++.+..+ .++.+.+.. .+.|+++|+||+|+.+.. .+..+.. ..+. +++
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~~------~~~~~~~~ 139 (161)
T 2dyk_A 73 VDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGPLY------GLGFGDPI 139 (161)
T ss_dssp HHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGGGG------GGSSCSCE
T ss_pred HHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHHHHH------hCCCCCeE
Confidence 5668899999999999987644332 233344433 468999999999986531 1111111 1233 689
Q ss_pred EccccCCCChHHHHHHHHHHH
Q psy12794 82 KTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++||++|.|++++++++.+.+
T Consensus 140 ~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 140 PTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ECBTTTTBSHHHHHHHHHHHC
T ss_pred EEecccCCChHHHHHHHHHhC
Confidence 999999999999999998765
No 119
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.52 E-value=1.7e-14 Score=90.28 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=65.7
Q ss_pred chhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 77 (106)
+.+.|++++|++++|+|++++. ++..+..|+..... .++|+++|+||+|+.+... ..+..+.+. ..+
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-----~~g 142 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-----DAG 142 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH-----HTT
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH-----HCC
Confidence 3456899999999999999885 78877777654332 5789999999999864321 222333332 124
Q ss_pred eEEEEccccCCCChHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLS 99 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~ 99 (106)
++++++||++|.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 6899999999999999998764
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.52 E-value=3.3e-14 Score=89.11 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=68.0
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC-CcCCHHHHHHHhCCCCcCCCceEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-NCMSVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+..+++++|++++|+|++++.++.+...|+.. +.. .+.|+++|+||+|+. ......+..+.+... .....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~-l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNF-IKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHH-TGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHH-HHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEE
Confidence 56788999999999999988777776543433 333 468999999999986 332222222222100 01235799
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||++|.|++++++++.+.+.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEeCCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999998774
No 121
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.51 E-value=3.3e-15 Score=85.72 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=61.2
Q ss_pred hhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794 3 WRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~ 76 (106)
...|++ ++|++++|+|+++..+ ...|+..... .+.|+++|+||+|+... ....++.+.+
T Consensus 73 ~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------- 137 (165)
T 2wji_A 73 ARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-------- 137 (165)
T ss_dssp HHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------
T ss_pred HHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------
Confidence 356665 8999999999987433 3334444433 36899999999997532 1223333333
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++++||++|.|++++|+++.+.+.
T Consensus 138 ~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 138 GVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp TSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 347999999999999999999998763
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.50 E-value=2.2e-14 Score=85.60 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=63.5
Q ss_pred hhhhhcc---CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCC--c
Q psy12794 3 WRCYYSN---TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLEN--L 73 (106)
Q Consensus 3 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~--~ 73 (106)
+..|+++ +|++++|+|.+++.+..+ ..+...+.. .++|+++|+||+|+...... .++.+.+.... .
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 4456666 777999999987544322 223344443 46899999999998653221 11222221000 0
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.....+++++||++|.|+++++++|.+.+..
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1246799999999999999999999988754
No 123
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.49 E-value=1.1e-13 Score=87.80 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=69.8
Q ss_pred chhhhhc---cCCeEEEEEECCC---cchHHHHHHHHHHHhcCc-CCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCc
Q psy12794 2 YWRCYYS---NTDAIIYVVDSSD---RDRIGISKEELLAMLKEE-ELRDAILVILANKQDMKNCM-SVAEVHRALGLENL 73 (106)
Q Consensus 2 ~~~~~~~---~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~ 73 (106)
++..|++ .+|++++|+|+++ +.++++...+..++.... ...++|+++|+||+|+.... ...++.+.+..
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~--- 302 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD--- 302 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS---
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc---
Confidence 3445544 4999999999998 677887776666654432 23579999999999986532 11233333321
Q ss_pred CCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 74 KDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 74 ~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+++++||++++|+++++++|.+.+.+
T Consensus 303 ---~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 303 ---DYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp ---CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred ---CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 1578999999999999999999988754
No 124
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.48 E-value=6.7e-13 Score=78.13 Aligned_cols=97 Identities=12% Similarity=0.221 Sum_probs=72.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..++++++++++|+|.++..++.....|+..+... ...+.|+++++||+|+... ....+...... ..++.
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~ 143 (199)
T 2f9l_A 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLS 143 (199)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCe
Confidence 5677899999999999999988888776666544322 1246899999999998642 23333333332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||+++.|++++++++.+.+.+
T Consensus 144 ~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 144 FIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999987753
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.48 E-value=1.9e-13 Score=85.62 Aligned_cols=96 Identities=16% Similarity=0.058 Sum_probs=66.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHH---HHHhcCcCCCCCeEEEEeeCCCCCCcCCH--------HHHHHHhCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSV--------AEVHRALGL 70 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------~~~~~~~~~ 70 (106)
+|..|++++|++++|+|++++.+++++..|. ..+... ..+.|+++++||+|+.+.... .++.+....
T Consensus 73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~ 150 (307)
T 3r7w_A 73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE 150 (307)
T ss_dssp THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999998876543 232221 246899999999998652111 222222221
Q ss_pred CCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 71 ~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
. ....++++++||++ .|+.+++..+...+
T Consensus 151 ~--g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 151 F--GFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp T--TCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred c--CCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 0 01137999999999 89999988887654
No 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.47 E-value=1.3e-14 Score=84.44 Aligned_cols=102 Identities=11% Similarity=0.006 Sum_probs=62.8
Q ss_pred chhhhhcc-CCeEEEEEECCCcchHHHHH-HHHHH--------HhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhC
Q psy12794 2 YWRCYYSN-TDAIIYVVDSSDRDRIGISK-EELLA--------MLKEEELRDAILVILANKQDMKNCM--SVAEVHRALG 69 (106)
Q Consensus 2 ~~~~~~~~-~d~~i~v~d~~~~~~~~~~~-~~~~~--------~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~ 69 (106)
+|..|+++ ++++++++++.+..++.... .|... ........+.|+++|+||+|+.... ...++.+.++
T Consensus 71 ~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (190)
T 2cxx_A 71 EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE 150 (190)
T ss_dssp HHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhh
Confidence 35567776 66666666666566666552 22211 1111111468999999999987543 1223344443
Q ss_pred CCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 70 LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
... .....+++++||++|.|++++|+++.+.+.+
T Consensus 151 ~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 151 VPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp CCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhh-hccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 210 0112468999999999999999999988754
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=2.3e-13 Score=88.75 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=66.3
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--HHHHHHHhCCCCcCCCceEEEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--VAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
.+++++|++++|+|++++.++.+.. ++.. +.. .++|+++|+||+|+.+... ..++.+.+..........++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~-~~~~-~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKR-IAGY-AHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHH-HHHH-HHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHH-HHHH-HHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3788999999999999988777653 3333 332 4699999999999865422 2233322221111223568999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++.+.+.+.
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHH
Confidence 999999999999999987764
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.43 E-value=5.3e-13 Score=85.12 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=65.7
Q ss_pred hhccCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 6 YYSNTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
+...+|++++|+|++++. ++.....++..+.... .++|+++|+||+|+.......+..+.+. ..+++++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~i 315 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKI 315 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEEC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEE
Confidence 445799999999998765 5666666665554431 2689999999999865332223333321 134579999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++|+|++++++++.+.+.
T Consensus 316 SA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 316 SALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999998774
No 129
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.43 E-value=1.3e-12 Score=86.20 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=66.0
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
..+++++|++++|+|++++.++.+.. .+ +.+ .++|+++|+||+|+.......++.+..+ ...+++++
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~i 384 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKI 384 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEE
Confidence 45789999999999999887776543 22 332 3689999999999976545455555433 23478999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||++|.|+++++++|.+.+.
T Consensus 385 SAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988653
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.41 E-value=3.6e-13 Score=88.32 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=64.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
.+++++|++++|+|++++.+.. ..++...+.. .++|+++|+||+|+.+.. ...++.+.+..........++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3788999999999998754432 2234444433 468999999999986532 22333333321111123468999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++|+.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 131
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.41 E-value=2.5e-12 Score=75.34 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=70.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
+|..++++++++++|+|.++..+++.+..|+..+... ...+.|+++++||+|+.+. ........... ..++.
T Consensus 94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~ 167 (191)
T 1oix_A 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLS 167 (191)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCE
T ss_pred hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCE
Confidence 5778899999999999999888887766665543321 1246899999999998642 23333333332 23468
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||+++.|++++++++.+.+
T Consensus 168 ~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 168 FIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
No 132
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.40 E-value=4.8e-14 Score=82.09 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=63.6
Q ss_pred chhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~ 75 (106)
+|..|++ ++|++++|+|.++ ++....++..... .+.|+++++||+|+... ....++.+.+
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------- 141 (188)
T 2wjg_A 76 IARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL------- 141 (188)
T ss_dssp HHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-------
T ss_pred HHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh-------
Confidence 3566775 4999999999864 4444555544433 46899999999997532 1233333333
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+++++++||+++.|++++|+++.+.+.+
T Consensus 142 -~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 142 -GVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp -TSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred -CCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999988764
No 133
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.39 E-value=6.2e-13 Score=83.16 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=64.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (106)
+..+++++|++++|+|++++.+..+ .++.+.+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~ 150 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPR 150 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEE
T ss_pred HHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEE
Confidence 3567899999999999987655443 34444444321 3689999999999864322 22222222 1234789
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||++|.|++++++.+.+.+.
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCHHHHHHHHHHhcc
Confidence 9999999999999999987653
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.39 E-value=7.5e-13 Score=86.11 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=64.0
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+..+++++|++++|+|++..... ..++..+ .. .+.|+++|+||+|+...... +..+.+. ...++++++
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~~~---~~~l~~l-~~---~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~ 174 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTPYE---DDVVNLF-KE---MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLL 174 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCHHH---HHHHHHH-HH---TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCC
T ss_pred HHHHHhcCCEEEEEEeCCChHHH---HHHHHHH-Hh---cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEE
Confidence 35588999999999998433222 2233333 22 37899999999998765443 3333343 334678999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++++.+.+.
T Consensus 175 vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHhhh
Confidence 999999999999999998873
No 135
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.38 E-value=2.1e-14 Score=88.00 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=62.1
Q ss_pred chhhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~ 75 (106)
+++.|+ +++|++++|+|+++..+...+ ...+.. .+.|+++|+||+|+.+. .....+.+.++
T Consensus 74 i~~~~~~~~~~d~vi~VvDas~~~~~~~l----~~~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg------ 140 (256)
T 3iby_A 74 IAAQSVIDLEYDCIINVIDACHLERHLYL----TSQLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG------ 140 (256)
T ss_dssp HHHHHHHHSCCSEEEEEEEGGGHHHHHHH----HHHHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC------
T ss_pred HHHHHHhhCCCCEEEEEeeCCCchhHHHH----HHHHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC------
Confidence 456677 899999999999875443332 233333 36899999999997532 23344555443
Q ss_pred CceEEEEccccCCCChHHHHHHHHHH
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
++++++||++|.|++++++++.+.
T Consensus 141 --~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 --CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp --SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred --CCEEEEECCCCCCHHHHHHHHHhh
Confidence 589999999999999999999764
No 136
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.38 E-value=1e-12 Score=87.59 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=62.6
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (106)
++..|++++|++++|+|+++.... ..|+..+.... .+.|+++|+||+|+.+. ....++.+.+. ..+.+
T Consensus 114 ~~~~~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~ 183 (535)
T 3dpu_A 114 SHQFFMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENR 183 (535)
T ss_dssp TCHHHHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTC
T ss_pred HHHHHccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCc
Confidence 467789999999999999765444 33443333321 35899999999998653 23444555443 23457
Q ss_pred EEEccccCCCChHHHHHHHHHHHhh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++||++|.|++++++.+.+.+.+
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTC
T ss_pred eEEEecCcccCHHHHHHHHHHHHhc
Confidence 9999999999999999999988753
No 137
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.36 E-value=5.1e-12 Score=83.32 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=61.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH--HHHHhCCCCcCCCceEEEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE--VHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (106)
.+++++|++++|+|++++.++..... ...++... .++|+++|+||+|+........ +.+. ...++++
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~ 376 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIG 376 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEE
T ss_pred hhcccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEE
Confidence 47899999999999998877642211 11222221 2689999999999875432211 2211 0147899
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++++.+.+.
T Consensus 377 vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 138
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.36 E-value=6.6e-14 Score=86.48 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=62.1
Q ss_pred chhhhhc--cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCC
Q psy12794 2 YWRCYYS--NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKD 75 (106)
Q Consensus 2 ~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~ 75 (106)
+++.|+. ++|++++|+|+++..+.. .+...+.. .+.|+++++||+|+... .....+.+.+
T Consensus 71 v~~~~~~~~~~d~vi~V~D~t~~e~~~---~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------- 136 (272)
T 3b1v_A 71 VARDYLLSQRADSILNVVDATNLERNL---YLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL------- 136 (272)
T ss_dssp HHHHHHHTTCCSEEEEEEEGGGHHHHH---HHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-------
T ss_pred HHHHHHhcCCCCEEEEEecCCchHhHH---HHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-------
Confidence 3566776 599999999998754332 23333332 36899999999997532 2333444444
Q ss_pred CceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 76 RTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 76 ~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++++||++|.|++++|+++.+.+.
T Consensus 137 -g~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 137 -GVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp -TSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred -CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 358999999999999999999987653
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.35 E-value=2.2e-12 Score=84.28 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=62.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHH-HHHhCCCCcCCCce-EE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV-HRALGLENLKDRTF-QI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 80 (106)
+..|++++|++++|+|.+++.+..+ .++.+++.. .++|+++|+||+|+.... ..+. .+.+. .++ ++
T Consensus 75 ~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~------lg~~~~ 142 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS------LGFGEP 142 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG------GSSCSC
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh------cCCCCE
Confidence 5678999999999999987655443 223344332 368999999999975321 1222 22221 122 57
Q ss_pred EEccccCCCChHHHHHHHHHHHh
Q psy12794 81 FKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++||++|.|++++++++.+.+.
T Consensus 143 ~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 143 IPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeccCCCCHHHHHHHHHHhcc
Confidence 89999999999999999998775
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=6.1e-12 Score=82.13 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=62.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCce-EEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTF-QIF 81 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (106)
|..+++++|++++|+|.+++.++.+ .++.+.+.. .++|+++|+||+|+.... .+..+. ...++ +++
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~------~~lg~~~~~ 142 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDF------YSLGFGEPY 142 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSS------GGGSSCCCE
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHH------HHcCCCCeE
Confidence 5678999999999999988766544 345555554 578999999999975421 001111 11122 689
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||++|.|++++++++.+.+.
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGG
T ss_pred EEeCcCCCChHHHHHHHHHhcC
Confidence 9999999999999999988775
No 141
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.34 E-value=5.8e-12 Score=77.23 Aligned_cols=85 Identities=25% Similarity=0.360 Sum_probs=62.2
Q ss_pred hhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCCc
Q psy12794 4 RCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRT 77 (106)
Q Consensus 4 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~ 77 (106)
+.|+ .++|++++|+|.++..+... ++..+.. .+.|+++++||+|+... ....++.+.++
T Consensus 76 ~~~~~~~~~d~ii~V~D~t~~~~~~~---~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-------- 140 (258)
T 3a1s_A 76 RDYLLKGDADLVILVADSVNPEQSLY---LLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-------- 140 (258)
T ss_dssp HHHHHHSCCSEEEEEEETTSCHHHHH---HHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------
T ss_pred HHHHhhcCCCEEEEEeCCCchhhHHH---HHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------
Confidence 4555 58999999999988654332 3333332 36899999999997432 23344555443
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++++||++|.|++++++++.+.+.
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 58999999999999999999998764
No 142
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.33 E-value=2.8e-14 Score=88.16 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=61.2
Q ss_pred hhhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794 3 WRCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~ 76 (106)
++.|+ +++|++++|+|+++..+......++.+ .+.|+++|+||+|+.+. .....+.+.++
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------- 142 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG------- 142 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-------
T ss_pred HHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-------
Confidence 34454 799999999999875444333322222 26899999999997532 23344444443
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++++||++|.|++++++++.+.+.
T Consensus 143 -~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 143 -CPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp -SCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred -CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 58999999999999999999987653
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.33 E-value=3.9e-12 Score=82.30 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=66.3
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCce
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTF 78 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (106)
+..++.++|++++|+|++++.++....+++...... ..+|+++++||+|+.+.... .++.+.+... .....
T Consensus 92 ~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~ 166 (403)
T 3sjy_A 92 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT--WAENV 166 (403)
T ss_dssp HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--TTTTC
T ss_pred HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh--CCCCC
Confidence 445788999999999999876455554444332221 23699999999998653211 2333333211 22356
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||++|.|++++++.|.+.+.
T Consensus 167 ~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 167 PIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEEEECCCCcChHHHHHHHHHhCC
Confidence 8999999999999999999988664
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.29 E-value=9.8e-12 Score=81.22 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=64.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--CHHHHHHHhCCCCcCCCceEEEE
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--SVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
.+++.+|++++++|.+++.+..+. .+...+.. .++|+++++||+|+.+.. ...++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 367889999999999876665543 23343333 468999999999986532 23333322211100223458999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++.+.+.+.
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.27 E-value=3.6e-11 Score=79.03 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=60.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+++++|++++|+|.+++.+..+ .. +...+. ++|+++|+||+|+.+..... ... . .....+++++||
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~-i~~~l~-----~~piivV~NK~Dl~~~~~~~----~~~--~-~~~~~~~i~iSA 365 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QE-IYEQVK-----HRPLILVMNKIDLVEKQLIT----SLE--Y-PENITQIVHTAA 365 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HH-HHHHHT-----TSCEEEEEECTTSSCGGGST----TCC--C-CTTCCCEEEEBT
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HH-HHHhcc-----CCcEEEEEECCCCCcchhhH----HHH--H-hccCCcEEEEEC
Confidence 6789999999999998766554 22 333332 37999999999986532111 111 0 113467999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q psy12794 86 KEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~~ 104 (106)
++|.|++++++++.+.+..
T Consensus 366 ktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 146
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.25 E-value=5.4e-11 Score=80.30 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=65.8
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+..+++.+|++++|+|+++..++.....|... .. .+.|+++++||+|+.... ..++.+.+... +.....++++
T Consensus 90 v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a-~~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~~~vi~ 162 (600)
T 2ywe_A 90 VSRALAACEGALLLIDASQGIEAQTVANFWKA-VE----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDPEEAIL 162 (600)
T ss_dssp HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH-HH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCGGGCEE
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHH-HH----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCcccEEE
Confidence 55678999999999999988776655543322 22 468999999999987542 33322222110 0111225899
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++++.+.+.
T Consensus 163 vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 163 ASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EEeecCCCchHHHHHHHHhcc
Confidence 999999999999999998764
No 147
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.24 E-value=3.3e-12 Score=81.83 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=61.0
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCc---
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRT--- 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~--- 77 (106)
++.++++.++++++|+|++++. ......+.++. .++|+++|+||+|+.... ....+.+.+... .+..+
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~-~~~~g~~~ 133 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS-AKQLGLKP 133 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH-HHHTTCCC
T ss_pred HHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHH-HHHcCCCc
Confidence 4678899999999999998742 11111233332 368999999999986432 233333221100 01112
Q ss_pred eEEEEccccCCCChHHHHHHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
.+++.+||++|.|++++++.+.+..
T Consensus 134 ~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 134 EDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2789999999999999999987654
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.24 E-value=1.4e-11 Score=82.19 Aligned_cols=96 Identities=18% Similarity=0.070 Sum_probs=64.9
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC---CHHHHHHHhCCCC-cCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM---SVAEVHRALGLEN-LKDRT 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~~-~~~~~ 77 (106)
++..+++.+|++++|+|+++........ .+.. +.. .+.|+++++||+|+.+.. ...++.+ +.... .....
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e-~l~~-~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~e~~~~~ 141 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVE-SIQH-AKD---AHVPIVLAINKCDKAEADPEKVKKELLA-YDVVCEDYGGD 141 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHH-HHHH-HHT---TTCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCCCCSSSS
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHH-HHHH-HHH---cCCcEEEEEecccccccchHHHHHHHHh-hhhhHHhcCCC
Confidence 4567889999999999999865554433 2222 222 468999999999986421 1112222 21111 01235
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++++||++|.|++++++++...+.
T Consensus 142 ~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 142 VQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp EEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCchhHHHHHHHhhh
Confidence 78999999999999999999987753
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.24 E-value=3.5e-11 Score=81.20 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=65.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~ 79 (106)
|..+++.+|++++|+|+++..++.....|.. ... .+.|+++++||+|+.+... ..++.+.++. ...+
T Consensus 88 v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~-~~~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~ 157 (599)
T 3cb4_D 88 VSRSLAACEGALLVVDAGQGVEAQTLANCYT-AME----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-----DATD 157 (599)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCTHHHHHHHH-HHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC-----CCTT
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEeeeccCcccccHHHHHHHHHHHhCC-----Ccce
Confidence 5678899999999999998766655544332 222 3689999999999975421 1233344332 1124
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++++||++|.|++++++++.+.+.
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSC
T ss_pred EEEeecccCCCchhHHHHHhhcCC
Confidence 899999999999999999998765
No 150
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.24 E-value=3.1e-11 Score=74.32 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=63.2
Q ss_pred hhhhh--ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc----CCHHHHHHHhCCCCcCCC
Q psy12794 3 WRCYY--SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~ 76 (106)
++.|+ .++|++++|+|+++.. ....++...... ...|+++++||+|+.+. .....+.+.++
T Consensus 73 ~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------- 139 (271)
T 3k53_A 73 ARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG------- 139 (271)
T ss_dssp HHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-------
T ss_pred HHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-------
Confidence 55666 6899999999987642 233334444332 23899999999996431 23444555553
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
++++++||++|.|++++++.+.+.+..
T Consensus 140 -~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 140 -VPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp -SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred -CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999999999987753
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.22 E-value=2.1e-10 Score=74.34 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=54.6
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----CHHHHHHHhCCCCcCCCceEEE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM----SVAEVHRALGLENLKDRTFQIF 81 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
....+|++++|+|++++.......+.+..+ .. ...+|+++++||+|+.+.. ...++.+.+... .....+++
T Consensus 101 ~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~--l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~i 175 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPCPQPQTKEHLMAL-EI--LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGT--IAENAPII 175 (408)
T ss_dssp TCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HH--TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTS--TTTTCCEE
T ss_pred hHhhCCEEEEEEECCCCCCCchhHHHHHHH-HH--cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhc--CCCCCeEE
Confidence 355679999999998642111111112211 11 1236899999999986532 234455555421 12357899
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||++|.|+++++++|.+.+.
T Consensus 176 ~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 176 PISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp EC------CHHHHHHHHHHHSC
T ss_pred EeeCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999988654
No 152
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.20 E-value=2.8e-11 Score=75.67 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=60.8
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC-cCCHHHHHHHhCCCCcCCCce-EEE
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN-CMSVAEVHRALGLENLKDRTF-QIF 81 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (106)
..+++.+|++++|+|.++ -+. ...++.+.+.. .+.|+++++||+|+.. .....+..+.+. ...++ .++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~--~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i 152 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIV 152 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEE
T ss_pred HHHHhcCCEEEEEEeCCC-CCH--HHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceE
Confidence 456789999999999976 332 22344444443 4689999999999865 111222222222 11223 789
Q ss_pred EccccCCCChHHHHHHHHHHHh
Q psy12794 82 KTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 82 ~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++||+++.|++++++.+.+.+.
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999986543
No 153
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.17 E-value=2.6e-10 Score=76.98 Aligned_cols=94 Identities=22% Similarity=0.187 Sum_probs=62.0
Q ss_pred chhhhhccCCeEEEEEECCC---cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC--------------HH--
Q psy12794 2 YWRCYYSNTDAIIYVVDSSD---RDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS--------------VA-- 62 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--------------~~-- 62 (106)
++..+++.+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+..... ..
T Consensus 86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 86 LRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 45567888999999999998 44444322 1222 4689999999999864211 00
Q ss_pred ---------HHHHHhCCCCc----------CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 63 ---------EVHRALGLENL----------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 63 ---------~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++.+.+....+ .....+++.+||++|.|++++++++...+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111110000 123568999999999999999999987664
No 154
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.16 E-value=1.2e-11 Score=79.23 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=62.1
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCc---
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRT--- 77 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~--- 77 (106)
++.++++.++++++|+|++++.+. ....+.+++ .++|+++|+||+|+.... ....+.+.+... ....+
T Consensus 64 ~L~~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-~~~~g~~~ 135 (369)
T 3ec1_A 64 MLHRIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-AEELGLCP 135 (369)
T ss_dssp HHHHHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-HHHcCCCc
Confidence 466788999999999999986531 111123332 368999999999986532 233333321100 01112
Q ss_pred eEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 78 FQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+++.+||++|.|++++++.+.+...
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 37899999999999999999876553
No 155
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.16 E-value=3.5e-12 Score=75.88 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=45.8
Q ss_pred chhhhhcc----CCeEEEEEECC-CcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCCcCC
Q psy12794 2 YWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKNCMS 60 (106)
Q Consensus 2 ~~~~~~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~ 60 (106)
+|..|+++ +|++++|+|++ ++.++.....++.+.+.... ..+.|+++|+||+|+.....
T Consensus 71 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 71 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 46677777 89999999999 77888888887777765321 24789999999999876543
No 156
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.15 E-value=8.8e-11 Score=72.87 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=61.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
..++++|++++|+|+.++.+.... .+.+++ .++|.++|+||+|+.+........+.+. ..+++++.+|
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~-----~~g~~~i~iS 86 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSLSIN 86 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEEECC
T ss_pred HHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH-----hcCCcEEEEE
Confidence 457899999999999987665321 233443 4689999999999875322223333332 2245889999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q psy12794 85 AKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 85 a~~~~~v~~~~~~l~~~~~ 103 (106)
|+++.|++++++.+.+.+.
T Consensus 87 A~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 87 SVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCTTGGGHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999998877654
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.15 E-value=1.9e-10 Score=76.78 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=38.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
+..+++.+|++++|+|+++..+...... +.. ... .++|+++++||+|+...
T Consensus 99 ~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~~---~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 99 TYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CRL---RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HHT---TTCCEEEEEECTTSCCS
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HHH---cCCCEEEEEeCCCCccc
Confidence 5678999999999999998766655442 322 233 46899999999998653
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.14 E-value=4.1e-10 Score=72.10 Aligned_cols=92 Identities=22% Similarity=0.215 Sum_probs=62.2
Q ss_pred hhccCCeEEEEEECCCcc--hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHH----H---HHHhCCCCcCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRD--RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE----V---HRALGLENLKDR 76 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~---~~~~~~~~~~~~ 76 (106)
++..+|++++|+|++++. ...... .+.+.+......+.|+++|+||+|+.+.. ..+ + ...+. ..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~ 326 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SP 326 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CC
Confidence 468899999999998765 333322 23333333333578999999999986532 221 1 12221 12
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 77 TFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
..+++++||+++.|++++++++.+.+..
T Consensus 327 ~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 327 IFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 4578999999999999999999887653
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.13 E-value=1.1e-10 Score=77.10 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=61.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCce
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTF 78 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~ 78 (106)
+..++.++|++++|+|+++........ .+. .+.. .+.|.++++||+|+.+..... ++.+.+.... .....
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~-~~~~~ 163 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGE-HML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH-NLKNS 163 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHH-HHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS-SGGGC
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHH-HHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc-ccccc
Confidence 345688999999999998742222111 121 2222 357889999999987532222 2333322110 01256
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++++||++|.|+++++++|.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 8999999999999999999998763
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.12 E-value=8.1e-11 Score=77.23 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=58.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
+..+++++|++++|+|..+..+. ...++.+.+.. .++|+++|+||+|+.+.. ....+.+. ...-..+.
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-----lg~~~~~~ 163 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-----LGFGEPYP 163 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-----GSSSSEEE
T ss_pred HHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-----cCCCceEE
Confidence 56788999999999998764333 33456666655 579999999999975321 11111111 11124579
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|++++++.+.+.+.
T Consensus 164 iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 164 ISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CCTTTCTTHHHHHHHHHTTGG
T ss_pred eecccccchHHHHHHHHhhcc
Confidence 999999999999999987654
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.10 E-value=1.6e-10 Score=71.68 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=60.0
Q ss_pred chhhhhccCCeEE-EEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC--CcCCCce
Q psy12794 2 YWRCYYSNTDAII-YVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE--NLKDRTF 78 (106)
Q Consensus 2 ~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~ 78 (106)
++..|+++++.++ +|+|+++..+..+...++ +.+.. .+.|+++|+||+|+.+.... ..+.+... .......
T Consensus 154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~-~~~~~---~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 227 (299)
T 2aka_B 154 MLMQFVTKENCLILAVSPANSDLANSDALKIA-KEVDP---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYI 227 (299)
T ss_dssp HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH-HHHCT---TCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEE
T ss_pred HHHHHHcCCCeEEEEEecCCcchhhhHHHHHH-HHhCC---CCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcE
Confidence 3567888998777 799997654433322223 33332 46899999999998653220 11122211 1111235
Q ss_pred EEEEccccCCCChHHHHHHHHHH
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNA 101 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~ 101 (106)
+++.+||++|.|++++++++.+.
T Consensus 228 ~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 228 GVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp ECCCCCCBCTTSCBCHHHHHHHH
T ss_pred EEECCChhhccccccHHHHHHHH
Confidence 78999999999999999988764
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.08 E-value=6.3e-10 Score=72.14 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=58.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC----CHHHHHHHhCCCCcCCCceEEEE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM----SVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
...+|++++|+|+++........+.+..+ .. ...+|+++++||+|+.+.. ...++.+.+... .....++++
T Consensus 104 ~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~--~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~i~ 178 (410)
T 1kk1_A 104 ASLMDGAILVIAANEPCPRPQTREHLMAL-QI--IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT--VAENAPIIP 178 (410)
T ss_dssp GGGCSEEEEEEETTSCSSCHHHHHHHHHH-HH--HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--TTTTCCEEE
T ss_pred hhhCCEEEEEEECCCCCCChhHHHHHHHH-HH--cCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhc--CcCCCeEEE
Confidence 45679999999998642111111112111 11 1236899999999986532 123344444321 123578999
Q ss_pred ccccCCCChHHHHHHHHHHHh
Q psy12794 83 TSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+||++|.|+++++++|.+.+.
T Consensus 179 vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 179 ISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred eeCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999988654
No 163
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.04 E-value=4.3e-10 Score=65.51 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=49.4
Q ss_pred chhhhhcc----CCeEEEEEECC-CcchHHHHHHHHHHHhcCcC---CCCCeEEEEeeCCCCCCcCCHHHHHHHh
Q psy12794 2 YWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEE---LRDAILVILANKQDMKNCMSVAEVHRAL 68 (106)
Q Consensus 2 ~~~~~~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 68 (106)
.|..|+.+ +|++++|+|++ ++.++.....++...+.... ..+.|+++|+||+|+.+.....++.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 46677766 89999999999 78888888777776654321 1468999999999987665555544433
No 164
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.04 E-value=2e-10 Score=75.03 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=54.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHH-------HHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-C-------HHHHHHH
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGIS-------KEELLAMLKEEELRDAILVILANKQDMKNCM-S-------VAEVHRA 67 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~-------~~~~~~~ 67 (106)
+..+++.+|++++|+|+++ .+++.. .+.+ ..... ..-+|+++++||+|+.+.. . ..++.+.
T Consensus 101 ~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~-~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~ 176 (435)
T 1jny_A 101 MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHI-ILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 176 (435)
T ss_dssp HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHH-HHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHH-HHHHH--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHH
Confidence 4567899999999999988 455532 2212 11111 1224789999999987521 1 1233333
Q ss_pred hCCCCcCCCceEEEEccccCCCChHHHH
Q psy12794 68 LGLENLKDRTFQIFKTSAKEGEGLNDSM 95 (106)
Q Consensus 68 ~~~~~~~~~~~~~~~~sa~~~~~v~~~~ 95 (106)
+.........++++++||++|.|+.+++
T Consensus 177 ~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 177 MRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHcCCCcCCceEEEeecccCccccccc
Confidence 3211112224789999999999997543
No 165
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.00 E-value=1.8e-09 Score=70.22 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhc-CcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLK-EEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
.+.++.+++++|++ ...+.++..+..+... ...+..+|.++++||+|+........+.+.+. ..+..++.+||
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA 306 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSA 306 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEEC
Confidence 45699999999997 4556555544333322 11123589999999999865422223333332 23468999999
Q ss_pred cCCCChHHHHHHHHHHHhh
Q psy12794 86 KEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~~ 104 (106)
++++|++++++++.+.+.+
T Consensus 307 ~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 307 LTGAGLPALKEALHALVRS 325 (416)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 166
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.99 E-value=1.5e-09 Score=71.79 Aligned_cols=89 Identities=21% Similarity=0.121 Sum_probs=51.5
Q ss_pred hhhhhccCCeEEEEEECCCcchHH-----HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHH----HHHhCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIG-----ISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEV----HRALGLE 71 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~----~~~~~~~ 71 (106)
+..+++++|++++|+|++++.+.. ....+....... ...+|+++++||+|+.+. ....++ .+.+...
T Consensus 128 ~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~ 205 (483)
T 3p26_A 128 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDI 205 (483)
T ss_dssp HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHc
Confidence 456789999999999998753321 111122222222 123579999999998752 111222 2222111
Q ss_pred CcCCCceEEEEccccCCCChHH
Q psy12794 72 NLKDRTFQIFKTSAKEGEGLND 93 (106)
Q Consensus 72 ~~~~~~~~~~~~sa~~~~~v~~ 93 (106)
......++++++||++|.|+.+
T Consensus 206 g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 206 GFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCCGGGEEEEECCSSSCTTSSS
T ss_pred CCCcccceEEEEeeecCCCccc
Confidence 1122367999999999999975
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.99 E-value=2.6e-10 Score=75.59 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=58.4
Q ss_pred chhhhhccCCeEEEEEECCCc---chHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCc--CC-
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL--KD- 75 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~- 75 (106)
++..++..+|++++|+|+++. .+.+.+ ... .. .+.|+++++||+|+.+... .++.+.+..... ..
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~-~~---~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~ 137 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAI----QHA-KA---AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEW 137 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHH-HH---TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCC
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHH----HHH-Hh---cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHh
Confidence 455678899999999999874 333322 121 11 4689999999999864211 111111111100 11
Q ss_pred -CceEEEEccccCCCChHHHHHHHHH
Q psy12794 76 -RTFQIFKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 76 -~~~~~~~~sa~~~~~v~~~~~~l~~ 100 (106)
...+++++||++|.|++++++++..
T Consensus 138 ~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 138 GGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred CCCccEEEEeeeeccCcchhhhhhhh
Confidence 2368999999999999999998864
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.97 E-value=7e-10 Score=71.71 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=60.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-----VAEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~ 76 (106)
+..+++.+|++++|+|+++....... +.+. .+.. .+.| +++++||+|+.+... ..++.+.+........
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~-~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTR-EHLL-LARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHH-HHHH-HHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHH-HHHH-HHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 34568899999999999876443322 2232 2222 3577 689999999864211 1223333321111223
Q ss_pred ceEEEEccccCCCC----------hHHHHHHHHHHHh
Q psy12794 77 TFQIFKTSAKEGEG----------LNDSMDWLSNALQ 103 (106)
Q Consensus 77 ~~~~~~~sa~~~~~----------v~~~~~~l~~~~~ 103 (106)
..+++++||++|.| +.++++.+.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 46899999999764 8888888877653
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.97 E-value=4.9e-09 Score=68.47 Aligned_cols=88 Identities=18% Similarity=0.111 Sum_probs=53.9
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC--C----HHHHHHHhCCCCcCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM--S----VAEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~----~~~~~~~~~~~~~~~~ 76 (106)
+..++.++|++++|+|+++...... .+++.. ... ...+|+++++||+|+.+.. . ..++.+.+........
T Consensus 121 ~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~-~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~ 196 (434)
T 1zun_B 121 MATGASTCDLAIILVDARYGVQTQT-RRHSYI-ASL--LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT 196 (434)
T ss_dssp HHHHHTTCSEEEEEEETTTCSCHHH-HHHHHH-HHH--TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHH-HHHHHH-HHH--cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4557899999999999987643322 222222 222 1234799999999986521 1 1122222221110123
Q ss_pred ceEEEEccccCCCChHHH
Q psy12794 77 TFQIFKTSAKEGEGLNDS 94 (106)
Q Consensus 77 ~~~~~~~sa~~~~~v~~~ 94 (106)
..+++++||++|.|+.++
T Consensus 197 ~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 197 TMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp EEEEEECCTTTCTTTSSC
T ss_pred CceEEEEeccCCCCcccc
Confidence 478999999999999874
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.94 E-value=7e-10 Score=71.84 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=59.6
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-H----HHHHHHhCCCCcCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-V----AEVHRALGLENLKDR 76 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~~ 76 (106)
+..+++.+|++++|+|+++..... ..+++... .. .+.| +++++||+|+.+... . .++.+.+........
T Consensus 92 ~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~-~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (405)
T 2c78_A 92 MITGAAQMDGAILVVSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD 166 (405)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHH-HH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccccc
Confidence 345688999999999998765433 23333322 22 3567 889999999874211 1 123333321111123
Q ss_pred ceEEEEccccCCCC------------------hHHHHHHHHHHH
Q psy12794 77 TFQIFKTSAKEGEG------------------LNDSMDWLSNAL 102 (106)
Q Consensus 77 ~~~~~~~sa~~~~~------------------v~~~~~~l~~~~ 102 (106)
..+++++||++|.| +.++++.+.+.+
T Consensus 167 ~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 167 EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 46899999999987 677777776655
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.93 E-value=3.7e-09 Score=72.64 Aligned_cols=97 Identities=24% Similarity=0.271 Sum_probs=64.4
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-----CH---H----HHHH----
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-----SV---A----EVHR---- 66 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~---~----~~~~---- 66 (106)
+..|++++|++++|+|++++.+..+... +...+.. .+.|+++|+||+|+.... .. . .+.+
T Consensus 194 ~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~ 269 (695)
T 2j69_A 194 SLGYVNNCHAILFVMRASQPCTLGERRY-LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNA 269 (695)
T ss_dssp HTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHH
Confidence 5578999999999999988777766543 3333333 367899999999985431 10 0 1211
Q ss_pred HhCCCC----cCCCceEEEEcccc--------------CCCChHHHHHHHHHHHh
Q psy12794 67 ALGLEN----LKDRTFQIFKTSAK--------------EGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 67 ~~~~~~----~~~~~~~~~~~sa~--------------~~~~v~~~~~~l~~~~~ 103 (106)
.+.... ......+++.+||+ ++.|+++++..+.+.+.
T Consensus 270 ~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 270 NLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 111000 00123478999999 99999999999987664
No 172
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.93 E-value=3.8e-09 Score=69.14 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=53.3
Q ss_pred hhhhhccCCeEEEEEECCCcch---H---HHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcC----CH----HHHHHH
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDR---I---GISKEELLAMLKEEELRDAI-LVILANKQDMKNCM----SV----AEVHRA 67 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~----~~----~~~~~~ 67 (106)
+..+++++|++++|+|+++... + ....+.+.. ... .+.| +++++||+|+.... .. .++.+.
T Consensus 112 ~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~-~~~---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~ 187 (439)
T 3j2k_7 112 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKT---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPF 187 (439)
T ss_pred HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH-HHH---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHH
Confidence 4456789999999999987531 1 111212222 222 3455 99999999985321 11 122222
Q ss_pred hCCCCcCC-CceEEEEccccCCCChHHHHH
Q psy12794 68 LGLENLKD-RTFQIFKTSAKEGEGLNDSMD 96 (106)
Q Consensus 68 ~~~~~~~~-~~~~~~~~sa~~~~~v~~~~~ 96 (106)
+....... ..++++++||++|.|+.++.+
T Consensus 188 l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 188 LKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22111111 257899999999999998654
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.93 E-value=4.3e-09 Score=67.56 Aligned_cols=90 Identities=9% Similarity=0.084 Sum_probs=59.0
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEee-CCCCCCcCCH----HHHHHHhCCCCcCCCce
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILAN-KQDMKNCMSV----AEVHRALGLENLKDRTF 78 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (106)
.+++.+|++++|+| +.. ......+++... .. .+.|. ++++| |+|+ +.... .++.+.+... ....+
T Consensus 79 ~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~-~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~ 149 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQG-LDAHTGECIIAL-DL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDW 149 (370)
T ss_dssp HHHHTCSEEEEEEC-TTC-CCHHHHHHHHHH-HH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTC
T ss_pred HHHHHCCEEEEEEc-CCC-CcHHHHHHHHHH-HH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCce
Confidence 45688999999999 543 233333333222 22 34666 89999 9998 43211 2344444321 11347
Q ss_pred EEEE--ccccC---CCChHHHHHHHHHHHh
Q psy12794 79 QIFK--TSAKE---GEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~--~sa~~---~~~v~~~~~~l~~~~~ 103 (106)
++++ +||++ +.|++++++.|.+.+.
T Consensus 150 ~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 150 ECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp EEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 8999 99999 9999999999988764
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=2.9e-10 Score=72.75 Aligned_cols=82 Identities=9% Similarity=0.190 Sum_probs=41.8
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
+++++++.+ ..++......+...+. .++|+++|+||+|+...... .++.+.+ ...+++++++||++
T Consensus 148 ~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-----~~~~i~~~~~Sa~~ 217 (361)
T 2qag_A 148 CCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTLKERERLKKRILDEI-----EEHNIKIYHLPDAE 217 (361)
T ss_dssp EEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-----TCC-CCSCCCC---
T ss_pred EEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----HHCCCCEEeCCCcC
Confidence 455555532 3344444433333332 46899999999998653222 1233333 33467899999999
Q ss_pred CCChHHHHHHHHHHHhh
Q psy12794 88 GEGLNDSMDWLSNALQK 104 (106)
Q Consensus 88 ~~~v~~~~~~l~~~~~~ 104 (106)
+.| ++.|.++.+.+.+
T Consensus 218 ~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 218 SDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -------CHHHHHHHHH
T ss_pred CCc-chhHHHHHHHHHh
Confidence 999 8888888777654
No 175
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.86 E-value=2.8e-09 Score=64.98 Aligned_cols=97 Identities=13% Similarity=-0.011 Sum_probs=55.6
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCC--------------
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE-------------- 71 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-------------- 71 (106)
++.+ +++++++|.+...+..+...............+.|+++|+||+|+.......++.+.+...
T Consensus 135 ~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 213 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQ 213 (262)
T ss_dssp TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHH
T ss_pred HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhcccccc
Confidence 4466 8999999986443333322111111000001357999999999986432111122111000
Q ss_pred -----------CcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 72 -----------NLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 72 -----------~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.......+++++||+++.|++++++++.+.+.
T Consensus 214 ~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 214 GLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 00011237899999999999999999998775
No 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.86 E-value=3.2e-09 Score=64.83 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=56.5
Q ss_pred hhhccCCeEEEEEECCCcchHH-HHHHHHHHHhcCcCCCCCeEEEEee-CCCCCCcCCHHH------------HHHHhCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIG-ISKEELLAMLKEEELRDAILVILAN-KQDMKNCMSVAE------------VHRALGL 70 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~~~~~~~~~------------~~~~~~~ 70 (106)
.+++++|++++|+|+++..... ....++.+.... . ...|.++++| |+|+.+. .... ..+.++.
T Consensus 101 ~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-D-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTT
T ss_pred hcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-h-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCC
Confidence 3678999999999998632222 222333333221 0 1356666666 9998743 2222 2233321
Q ss_pred CCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 71 ~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
.. ..+..+++||+++.|++++|+++.+.+..
T Consensus 178 ~~---~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 178 RI---CAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CE---EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eE---EEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 00 00111789999999999999999988764
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.85 E-value=1.8e-09 Score=68.90 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=57.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCC--cCCCceE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLEN--LKDRTFQ 79 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~--~~~~~~~ 79 (106)
....+|++++|+|++....... +. ....+.|.++|+||+|+...... .++.+.+.... ...++.+
T Consensus 189 ~~~~aD~vl~V~d~~~~~~~~~--------l~-~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 259 (355)
T 3p32_A 189 VANMVDTFVLLTLARTGDQLQG--------IK-KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPP 259 (355)
T ss_dssp HHTTCSEEEEEEESSTTCTTTT--------CC-TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCC
T ss_pred HHHhCCEEEEEECCCCCccHHH--------HH-HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCc
Confidence 3578999999999865433211 11 11234699999999998643221 12222221000 0122467
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++.+||++|+|++++++++.+.+.
T Consensus 260 vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 260 VLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp EEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.85 E-value=6.7e-09 Score=64.89 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=57.1
Q ss_pred hhhhhccCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcC--CCceE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLK--DRTFQ 79 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (106)
+..|++++|++++|+|.++.. ...+.. .+.+.+.. .+.|+++|+||+|+..... ...+.+...... ....+
T Consensus 161 ~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 234 (315)
T 1jwy_B 161 VMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIG 234 (315)
T ss_dssp HHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEE
T ss_pred HHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEE
Confidence 456889999999999974332 111111 13333333 4689999999999865332 011222211101 12345
Q ss_pred EEEccccC---CCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKE---GEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~---~~~v~~~~~~l~~~~~ 103 (106)
+..+||.+ +.|+.++++.+...+.
T Consensus 235 v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 235 VINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred EecCChhhhccCCCHHHHHHHHHHHHh
Confidence 55666666 8999999998887764
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.79 E-value=9.5e-09 Score=61.11 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=55.9
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEccc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
...+.+++|+|+++.... ... .... .+.|.++++||+|+.+. ....++.+.+... ....+++++||
T Consensus 128 ~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa 195 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVEKMKADAKLI---NPRAKIIEMDL 195 (221)
T ss_dssp CSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECBT
T ss_pred cccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHHHHHHHHHHh---CCCCeEEEeec
Confidence 356788899998764321 111 1111 24789999999998542 2444444443210 12468999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy12794 86 KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~~ 103 (106)
++|.|++++++++.+.+.
T Consensus 196 ~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 196 KTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TTTBTHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 180
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.78 E-value=6.9e-09 Score=74.43 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=59.0
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcCC-----HHHHHHHhCCCCcCCCc
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMKNCMS-----VAEVHRALGLENLKDRT 77 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~ 77 (106)
..+++.+|++|+|+|+++..... ..+++.. +.. .+.| +++++||+|+.+... ..++.+.+.........
T Consensus 377 i~gas~AD~aILVVDAtdGv~~Q-TrEhL~l-l~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~ 451 (1289)
T 3avx_A 377 ITGAAQMDGAILVVAATDGPMPQ-TREHILL-GRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD 451 (1289)
T ss_dssp HHTSCCCSEEEEEEETTTCSCTT-HHHHHHH-HHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHhhCCEEEEEEcCCccCcHH-HHHHHHH-HHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence 45678999999999998754322 2222322 222 3567 789999999874211 12233333211112235
Q ss_pred eEEEEccccCC--------CChHHHHHHHHHHH
Q psy12794 78 FQIFKTSAKEG--------EGLNDSMDWLSNAL 102 (106)
Q Consensus 78 ~~~~~~sa~~~--------~~v~~~~~~l~~~~ 102 (106)
++++++||++| .|+.++++.+.+.+
T Consensus 452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred eeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 78999999999 46888888887654
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.78 E-value=2e-08 Score=68.73 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=35.2
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
+..+++.+|++++|+|+++....... .++..... .+.|+++++||+|+.
T Consensus 91 ~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 91 IRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 56788999999999998876443322 23333222 368999999999986
No 182
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.1e-09 Score=74.23 Aligned_cols=89 Identities=22% Similarity=0.167 Sum_probs=51.7
Q ss_pred hhhhhccCCeEEEEEECCCcc---hH---HHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc--CCHH----HHHHHhCC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRD---RI---GISKEELLAMLKEEELRDAILVILANKQDMKNC--MSVA----EVHRALGL 70 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~----~~~~~~~~ 70 (106)
+..+++++|++++|+|++++. ++ ..... ....... ...+|+++|+||+|+.+. .... ++.+.+..
T Consensus 262 ~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~--lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~ 338 (611)
T 3izq_1 262 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVD 338 (611)
T ss_dssp HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHT--TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHH--cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHh
Confidence 345788999999999997631 00 11111 2222222 123579999999998652 1111 22222211
Q ss_pred CCcCCCceEEEEccccCCCChHHH
Q psy12794 71 ENLKDRTFQIFKTSAKEGEGLNDS 94 (106)
Q Consensus 71 ~~~~~~~~~~~~~sa~~~~~v~~~ 94 (106)
.......++++++||++|.|+.++
T Consensus 339 ~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 339 IGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hcccccCccEEeeecccCCCcccc
Confidence 111223578999999999999865
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.75 E-value=5.1e-09 Score=69.03 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred hhhhhccCCeEEEEEECCCcc---hHH---HHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCcC-CH-------HHHHHH
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRD---RIG---ISKEELLAMLKEEELRDAI-LVILANKQDMKNCM-SV-------AEVHRA 67 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-~~-------~~~~~~ 67 (106)
+..++..+|++++|+|+++.. +|+ ...+.+.. ... .+.| +++++||+|+.... .. .++.+.
T Consensus 138 ~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~ 213 (467)
T 1r5b_A 138 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ART---QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMF 213 (467)
T ss_dssp ----TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHH---TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHH
T ss_pred HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH-HHH---cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHH
Confidence 345678999999999998752 111 11111211 111 3566 99999999986421 11 123332
Q ss_pred hCCC-CcC-CCceEEEEccccCCCChHHHH
Q psy12794 68 LGLE-NLK-DRTFQIFKTSAKEGEGLNDSM 95 (106)
Q Consensus 68 ~~~~-~~~-~~~~~~~~~sa~~~~~v~~~~ 95 (106)
+... ... ...++++++||++|.|+.+++
T Consensus 214 l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 214 LRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHhcCCCccCCceEEeccccccccccccc
Confidence 2110 001 125789999999999998654
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.74 E-value=3.5e-08 Score=58.09 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=58.7
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCceEEEEc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
+.++++++++|++.+.+..+.. +..++.. .+.|.++++||+|+.+... ...+...+.. ....+.++++
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 178 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQ--MIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNGDVQVETF 178 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCSCEEEEEC
T ss_pred hcccEEEEEEECCCCCchhHHH--HHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCCCCceEEE
Confidence 4789999999998765543211 2222222 4689999999999764321 1223333321 1124678999
Q ss_pred cccCCCChHHHHHHHHHHHh
Q psy12794 84 SAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 84 sa~~~~~v~~~~~~l~~~~~ 103 (106)
||+++.|++++++++.+.+.
T Consensus 179 Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC
T ss_pred eecCCCCHHHHHHHHHHHHh
Confidence 99999999999999988764
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.74 E-value=7.1e-10 Score=74.90 Aligned_cols=85 Identities=24% Similarity=0.240 Sum_probs=44.7
Q ss_pred hhhhccCCeEEEEEECCCcc---hH--H-HHHHHHHHHhcCcCCCCCe-EEEEeeCCCCCCc--CC----HHHHHHHh-C
Q psy12794 4 RCYYSNTDAIIYVVDSSDRD---RI--G-ISKEELLAMLKEEELRDAI-LVILANKQDMKNC--MS----VAEVHRAL-G 69 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~---~~--~-~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~--~~----~~~~~~~~-~ 69 (106)
..++..+|++++|+|++++. ++ . .....+ ..... .+.| +++|+||+|+.+. .. ..++.+.+ .
T Consensus 273 ~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~---lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~ 348 (592)
T 3mca_A 273 IAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRA---LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIK 348 (592)
T ss_dssp CC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHH---SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHH---cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHH
Confidence 34678899999999998532 11 0 111111 12222 2454 9999999998641 11 12344444 2
Q ss_pred CCCcCCCceEEEEccccCCCChH
Q psy12794 70 LENLKDRTFQIFKTSAKEGEGLN 92 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~~v~ 92 (106)
........++++++||++|.|+.
T Consensus 349 ~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 349 MVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TSCCCGGGEEEEEECSSSCSSSC
T ss_pred hhCCCccceEEEEEecccCcccc
Confidence 22222345789999999999997
No 186
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=1.6e-09 Score=66.61 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=54.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTS 84 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (106)
..+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+........+.+. ..+.++ .+|
T Consensus 17 ~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~g~~v-~iS 81 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-----KQGKRV-ITT 81 (262)
T ss_dssp HHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH-----HTTCCE-EEC
T ss_pred HHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH-----HcCCeE-EEE
Confidence 4578999999999998875543210 11 1 2 789999999999875322223333332 123456 899
Q ss_pred ccCCCChHHHHHHHH
Q psy12794 85 AKEGEGLNDSMDWLS 99 (106)
Q Consensus 85 a~~~~~v~~~~~~l~ 99 (106)
|.++.|++++++.+.
T Consensus 82 a~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 82 HKGEPRKVLLKKLSF 96 (262)
T ss_dssp CTTSCHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHH
Confidence 999999999887654
No 187
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=2.5e-09 Score=67.09 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=56.0
Q ss_pred hhhhhccCCeEEEEEECCCcch-HHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCcCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDR-IGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENLKDRT 77 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~ 77 (106)
++....++|.+++|+|+.+|.. ...+. +++...+..++|.++|+||+|+.+... ..++.+.+. ..+
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~----r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g 150 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLD----RFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIG 150 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHH----HHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHT
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCC
Confidence 3445789999999999986543 33333 333211125789999999999875422 233444432 124
Q ss_pred eEEEEccccCCCChHHHHHH
Q psy12794 78 FQIFKTSAKEGEGLNDSMDW 97 (106)
Q Consensus 78 ~~~~~~sa~~~~~v~~~~~~ 97 (106)
.+++.+||.++.|++++++.
T Consensus 151 ~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CCEEECCHHHHTTCTTTGGG
T ss_pred CeEEEEecCCCCCHHHHHhh
Confidence 57899999999998776553
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.73 E-value=2.8e-07 Score=61.67 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=35.9
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
+..+++.+|++++|+|+++...... . .+...... .+.|+++++||+|+...
T Consensus 99 ~~~~l~~aD~~IlVvDa~~g~~~~t-~-~~~~~~~~---~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 99 TYRTLTAVDCCLMVIDAAKGVEDRT-R-KLMEVTRL---RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp HHHGGGGCSEEEEEEETTTCSCHHH-H-HHHHHHTT---TTCCEEEEEECTTSCCS
T ss_pred HHHHHHHCCEEEEEEeCCccchHHH-H-HHHHHHHH---cCCCEEEEEcCcCCccc
Confidence 4568899999999999987543222 2 12233332 46899999999998654
No 189
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.71 E-value=1.7e-09 Score=66.70 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=43.7
Q ss_pred CCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCCcCCCceEEEEccc
Q psy12794 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLENLKDRTFQIFKTSA 85 (106)
Q Consensus 10 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~sa 85 (106)
+|+++++++.++.. +......+.+.+.. ++|+++|+||+|+....... .+.+.+ ...+++++.+||
T Consensus 116 ~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l-----~~~~i~v~~~sa 185 (274)
T 3t5d_A 116 VQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEI-----QEHKIKIYEFPE 185 (274)
T ss_dssp CCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHH-----HHTTCCCCCC--
T ss_pred eeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHH-----HHcCCeEEcCCC
Confidence 78999999876532 22222223344433 68999999999975432222 222222 123567888999
Q ss_pred cCCCChHHHHHHHHHHH
Q psy12794 86 KEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 86 ~~~~~v~~~~~~l~~~~ 102 (106)
.+++|+++++++|.+.+
T Consensus 186 ~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 186 TDDEEENKLVKKIKDRL 202 (274)
T ss_dssp ---------CHHHHHTC
T ss_pred CCChhHHHHHHHHhcCC
Confidence 99999999999988754
No 190
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.67 E-value=3.5e-07 Score=62.93 Aligned_cols=52 Identities=21% Similarity=0.034 Sum_probs=38.8
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
.|..+++.+|++++|+|+++..++..... +..... .+.|+++++||+|+...
T Consensus 93 ~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 93 EVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence 35678899999999999998776665443 222222 36899999999998653
No 191
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.64 E-value=1.9e-07 Score=59.50 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=53.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC----HHHHHHHhCCCCc--CCCce
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS----VAEVHRALGLENL--KDRTF 78 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~~~~~~--~~~~~ 78 (106)
.....+|.+++|+|++.+.....+. .. ..+.|.++++||+|+.+... ..++...+..... .....
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~~~i~---~~------il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~ 253 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDELQGIK---RG------IIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKP 253 (349)
T ss_dssp HHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCC
T ss_pred hHHhhCCEEEEEEcCCcchhHHHhH---HH------HHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCc
Confidence 3467899999999987643221111 11 12468899999999854211 1122222221100 01235
Q ss_pred EEEEccccCCCChHHHHHHHHHHHh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
+++.+||++|.|++++++++.+.+.
T Consensus 254 ~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 254 KVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999987653
No 192
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.61 E-value=5.4e-08 Score=64.05 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=50.8
Q ss_pred hhhhhccCCeEEEEEECCCcch---HH---HHHHHHHHHhcCcCCCCC-eEEEEeeCCCCCCc--CCH----HHHHHHhC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDR---IG---ISKEELLAMLKEEELRDA-ILVILANKQDMKNC--MSV----AEVHRALG 69 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~--~~~----~~~~~~~~ 69 (106)
+..++.++|++++|+|+++... |+ ...+.+.. ... .+. ++++++||+|+.+. ... .++.+.+.
T Consensus 102 ~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~ 177 (458)
T 1f60_A 102 MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIK 177 (458)
T ss_dssp HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHH
Confidence 4457889999999999986421 10 22222222 222 244 59999999998631 111 12222221
Q ss_pred CCCcCCCceEEEEccccCCCChHHH
Q psy12794 70 LENLKDRTFQIFKTSAKEGEGLNDS 94 (106)
Q Consensus 70 ~~~~~~~~~~~~~~sa~~~~~v~~~ 94 (106)
.........+++++||++|.|+.++
T Consensus 178 ~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 178 KVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HcCCCccCceEEEeecccCcCcccc
Confidence 1111112468999999999998643
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.57 E-value=9.3e-08 Score=60.72 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=52.4
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHH----HHHHHhCCCC--cCCCceE
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA----EVHRALGLEN--LKDRTFQ 79 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~ 79 (106)
..+.+|++++|+|++....... +.. ...+.|.++|+||+|+.+..... ++.+.++... ......+
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~----l~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQG----IKK-----GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR 236 (341)
T ss_dssp HHTTCSEEEEEECC------CC----CCH-----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred HHHhCCEEEEEEeCCccHHHHH----HHH-----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCc
Confidence 3578999999999865422110 000 00146889999999986432222 2222211100 0112357
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++.+||++|.|++++++++.+.+.
T Consensus 237 vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 237 VLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987653
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.55 E-value=2.8e-08 Score=63.42 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=53.4
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcC-CHHHHHHHhCCCCcCCCceEE
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM-SVAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (106)
+...|++++|++++++|.++..........+...+.. .+.|+++|+||+|+.... ...+..+... ...+.+|
T Consensus 165 ~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 237 (360)
T 3t34_A 165 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP---SGDRTFGVLTKIDLMDKGTDAVEILEGRS----FKLKYPW 237 (360)
T ss_dssp HHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCT---TCTTEEEEEECGGGCCTTCCSHHHHTTSS----SCCSSCC
T ss_pred HHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcc---cCCCEEEEEeCCccCCCcccHHHHHcCcc----ccccCCe
Confidence 3567899999999999876543322111112222222 467999999999986432 2122222111 2345678
Q ss_pred EEccccCCCChHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDW 97 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~ 97 (106)
+.+|+.++.++++.+..
T Consensus 238 ~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 238 VGVVNRSQADINKNVDM 254 (360)
T ss_dssp EEECCCCHHHHHTTCCH
T ss_pred EEEEECChHHhccCCCH
Confidence 88999888777665443
No 195
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.55 E-value=3.5e-07 Score=58.49 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=51.6
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCcCCCceEEEEc
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENLKDRTFQIFKT 83 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
..|+|.+++|.+..-..+...+.+++... .. .++|.++|+||+|+.+... ..+....+ ...+++++.+
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVLMV 198 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEEEC
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEEEE
Confidence 57899999886654222333333333211 11 4678899999999865422 11233333 2235679999
Q ss_pred cccCCCChHHHHHHH
Q psy12794 84 SAKEGEGLNDSMDWL 98 (106)
Q Consensus 84 sa~~~~~v~~~~~~l 98 (106)
||.++.|++++...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999887643
No 196
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.55 E-value=2.4e-07 Score=56.34 Aligned_cols=90 Identities=11% Similarity=0.189 Sum_probs=52.7
Q ss_pred ccCCeEEEEEECCCcchHH-HHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH-----------HHHHHHhCCCCcCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIG-ISKEELLAMLKEEELRDAILVILANKQDMKNCMSV-----------AEVHRALGLENLKD 75 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-----------~~~~~~~~~~~~~~ 75 (106)
+++|++++|+|+++....+ ....++.+... ....+.|++++.||.|+.+.... ..+.+.++
T Consensus 104 ~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g------ 176 (247)
T 3lxw_A 104 PGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG------ 176 (247)
T ss_dssp TCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT------
T ss_pred CCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC------
Confidence 8999999999997532211 12223333322 22236899999999998653211 11122221
Q ss_pred CceEEEEcccc---CCCChHHHHHHHHHHHhh
Q psy12794 76 RTFQIFKTSAK---EGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 76 ~~~~~~~~sa~---~~~~v~~~~~~l~~~~~~ 104 (106)
..+.++..++. .+.|+.++++.+.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 12334444443 268999999999888764
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.55 E-value=5.1e-08 Score=58.11 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=42.5
Q ss_pred CCeEEEEeeCCCCCCc--CCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 43 DAILVILANKQDMKNC--MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+.|.++++||+|+.+. ....++.+.+.. .....+++++||++|.|++++|+++.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3677999999998542 234444443321 0124589999999999999999999987754
No 198
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.55 E-value=1.8e-06 Score=59.55 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=38.1
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
+..+++.+|++++|+|+++..+...... +..... .+.|+++++||+|+...
T Consensus 92 ~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 92 VERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence 5678899999999999998766655443 333322 36899999999998653
No 199
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.53 E-value=4.5e-08 Score=62.35 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=53.1
Q ss_pred hhhhhccCCeEEE-EEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEE
Q psy12794 3 WRCYYSNTDAIIY-VVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQI 80 (106)
Q Consensus 3 ~~~~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (106)
+..|+++++.+++ +.|.+....-.+...++ +.+.. .+.|+++|+||+|+.+... ..+..+. ....+.....++
T Consensus 160 ~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~-~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v 234 (353)
T 2x2e_A 160 LMQFVTKENCLILAVSPANSDLANSDALKVA-KEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHTSTTEEEEEEEETTSCGGGCHHHHHH-HHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEEC
T ss_pred HHHHHcCCCeEEEEEecCCCccchhHHHHHH-HHhCc---CCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEE
Confidence 4567777765555 55654322211221122 22332 4689999999999864322 1222211 001111123478
Q ss_pred EEccccCCCChHHHHHHHHH
Q psy12794 81 FKTSAKEGEGLNDSMDWLSN 100 (106)
Q Consensus 81 ~~~sa~~~~~v~~~~~~l~~ 100 (106)
+.+||+++.|++++++.+.+
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHH
T ss_pred EeCCcccccccccHHHHHHH
Confidence 89999999999999988876
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.46 E-value=1.7e-07 Score=65.00 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=56.2
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-HHHHHHHhCCCCcCCCceEEEEcccc
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-VAEVHRALGLENLKDRTFQIFKTSAK 86 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~ 86 (106)
..+|++++|+|++......+... +...+.. .+.|+++|+||+|+.+... ...+.. -....+.....+++.+||+
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~-ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~ 260 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALK-IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQK 260 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHH-HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCE
T ss_pred cCCcEEEEEEcCCCCcchhHHHH-HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEeccc
Confidence 57899999999986543333222 2333333 4689999999999864322 122222 1111111233578899999
Q ss_pred CCCChHHHHHHHHH
Q psy12794 87 EGEGLNDSMDWLSN 100 (106)
Q Consensus 87 ~~~~v~~~~~~l~~ 100 (106)
+|.|++++++.+.+
T Consensus 261 ~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 261 DIDGKKDITAALAA 274 (772)
T ss_dssp ESSSSEEHHHHHHH
T ss_pred ccccchhHHHHHHH
Confidence 99999999988876
No 201
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.45 E-value=2.6e-06 Score=58.86 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=36.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.+..+++.+|++++|+|+++........ .+... .. .+.|+++++||+|+..
T Consensus 98 ~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~-~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 98 EVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQA-NK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHH-HH---cCCCEEEEEeCCCccc
Confidence 3567889999999999998765444332 23222 22 4689999999999864
No 202
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.44 E-value=1.7e-07 Score=56.50 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=49.6
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC-CCCCeEEEEeeCCCCCCcCCHH--------HHHHHhCCCCcC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE-LRDAILVILANKQDMKNCMSVA--------EVHRALGLENLK 74 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~--------~~~~~~~~~~~~ 74 (106)
..+++++|++++|+|+++....+ ..++..+..... ...+|+++|+||+|+.+..... .+.+...
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~----- 179 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD----- 179 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH-----
T ss_pred HhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH-----
Confidence 34567889999999987543321 122222221100 0236999999999975432211 1111111
Q ss_pred CCceEEEEcccc-----CCCChHHHHHHHHHHHhh
Q psy12794 75 DRTFQIFKTSAK-----EGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 75 ~~~~~~~~~sa~-----~~~~v~~~~~~l~~~~~~ 104 (106)
..+..++.+++. ++.|+.++++.+...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 112234444444 336889999888877643
No 203
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.32 E-value=1.2e-07 Score=59.37 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 43 DAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
+.|+++|+||.|+...... .++.+.+. ..+++++++||+++ |++++|.++.+.+.+
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHHHT
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 5799999999998643211 22333332 23568999999999 999999999988754
No 204
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=9.5e-08 Score=61.88 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHH
Q psy12794 43 DAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDS 94 (106)
Q Consensus 43 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~ 94 (106)
.+|+++++||+|+.......++.+.+. ..+.+++.+||+.+.|+.++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~-----~~~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEE-----KRGYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHH-----HTTCEEEEECHHHHHHHHSC
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHh-----hcCCcEEEEeccchhhHHHH
Confidence 489999999999763222233333332 01347999999998888654
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=2.4e-07 Score=60.40 Aligned_cols=87 Identities=13% Similarity=0.233 Sum_probs=35.3
Q ss_pred hhccCCe--EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCH----HHHHHHhCCCCcCCCceE
Q psy12794 6 YYSNTDA--IIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV----AEVHRALGLENLKDRTFQ 79 (106)
Q Consensus 6 ~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~ 79 (106)
++.++++ ++++.+++. .+++.....+...+. .+.|+++|+||+|+...... .++.+.+. ..+++
T Consensus 133 l~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~-----~~~i~ 202 (418)
T 2qag_C 133 QMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ-----EHKIK 202 (418)
T ss_dssp CCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH-----HHTCC
T ss_pred hccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH-----HcCCe
Confidence 4556554 454544431 233333322323333 36899999999997542211 12222221 23567
Q ss_pred EEEccccCCCChHHHHHHHHHHH
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
++++||+++.++.+++..+...+
T Consensus 203 ~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 203 IYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp CCCCC-----------------C
T ss_pred EEeCCCCCCcCHHHHHHHHHhhC
Confidence 88999999999998887776644
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.10 E-value=5.4e-05 Score=51.01 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=34.1
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
..++-+|++|+|+|+...-...-.. .|..... .+.|.+++.||+|....
T Consensus 119 raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 119 RVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred HHHHhcCceEEEeecCCCcccccHH-HHHHHHH----hCCceEEEEecccchhc
Confidence 3467799999999998764443322 2333322 47899999999998653
No 207
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.00 E-value=5.2e-06 Score=55.88 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=36.9
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC 58 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 58 (106)
+..+++++|++++|+|+++.........++.. +.. .+.|+++|+||+|+...
T Consensus 182 ~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~-l~~---~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 182 LRWFAERVDLIILLFDAHKLEISDEFSEAIGA-LRG---HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHH-TTT---CGGGEEEEEECGGGSCH
T ss_pred HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHH-HHh---cCCCEEEEEECCCccCH
Confidence 45678899999999999875434444433433 333 45799999999998653
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.90 E-value=3.1e-05 Score=49.17 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=49.8
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC-----HHHHHHHhCCCCc--CCCceE
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS-----VAEVHRALGLENL--KDRTFQ 79 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~ 79 (106)
..++|.+++++|++...... .+ .. ...+.+.+++.||+|+..... ..++...+..... .....+
T Consensus 166 ~~~~d~vl~v~d~~~~~~~~-------~i-~~-~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~ 236 (337)
T 2qm8_A 166 ADLTDFFLVLMLPGAGDELQ-------GI-KK-GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP 236 (337)
T ss_dssp HTTSSEEEEEECSCC-------------C-CT-THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred HhhCCEEEEEEcCCCcccHH-------HH-HH-HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCC
Confidence 46889999999986432111 00 00 001246678889999643111 1222222221110 011346
Q ss_pred EEEccccCCCChHHHHHHHHHHHh
Q psy12794 80 IFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 80 ~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
++.+||+++.|++++++.+.+...
T Consensus 237 vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 237 VVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 888999999999999999887653
No 209
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.69 E-value=6e-05 Score=53.13 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=38.5
Q ss_pred chhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.|..+++.+|++++|+|+++..++.....| ..... .+.|+++++||+|+.
T Consensus 114 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 114 EVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcc
Confidence 467789999999999999988777665432 23222 368999999999975
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.50 E-value=0.00019 Score=49.15 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=58.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCC---HHHHHHHhCCCCc--------
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS---VAEVHRALGLENL-------- 73 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~-------- 73 (106)
..++-+|++++|+|+...-...- ...+..... .+.|.+++.||+|...... ..++.+.++....
T Consensus 86 raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 86 RSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 34677999999999986532221 112222222 3689999999999765422 2233333321100
Q ss_pred ------------------------------------------------CCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 74 ------------------------------------------------KDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 74 ------------------------------------------------~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
...-.+++..||+++.|++.+++.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 001246788899999999999998887553
No 211
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.47 E-value=0.00012 Score=44.93 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=30.1
Q ss_pred hccCCeEEEEEECCCcchHHHHH-HHHHHHhcCcC-CCCCeEEEEeeCCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISK-EELLAMLKEEE-LRDAILVILANKQDMKN 57 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~p~ilv~nK~D~~~ 57 (106)
.+.+|++++|+|++.. ++.... .++..+..... ...+|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3479999999998753 233222 23333222111 01269999999999854
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.45 E-value=0.0014 Score=45.54 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=32.7
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
..++-+|++++|+|+...-...... .+....+ .+.|.+++.||+|...
T Consensus 104 ~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 104 RSLRVLDGAVVVFCGTSGVEPQSET-VWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----HTCCEEEEEECSSSTT
T ss_pred HHHHHhCeEEEEEECCCCCchhHHH-HHHHHHH----cCCCeEEEEccccccC
Confidence 3466799999999998654333222 2333332 3689999999999754
No 213
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.39 E-value=0.00014 Score=44.43 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=28.6
Q ss_pred cCCeEEEEEECCCcchHHHHH-HHHHHHhcCcC-CCCCeEEEEeeCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISK-EELLAMLKEEE-LRDAILVILANKQDMK 56 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~p~ilv~nK~D~~ 56 (106)
++|++++|++++... +.... .++..+..... ....|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987643 33222 22322222111 0125999999999984
No 214
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.10 E-value=0.012 Score=37.93 Aligned_cols=41 Identities=10% Similarity=-0.057 Sum_probs=24.9
Q ss_pred CCCeEEEEeeCCCCCC--cCCHHHHHHHhCCCCcCCCceEEEEccccC
Q psy12794 42 RDAILVILANKQDMKN--CMSVAEVHRALGLENLKDRTFQIFKTSAKE 87 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 87 (106)
..+|+++++|+.|..- ......+.+... ..+.+++.+||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~-----~~~~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAA-----KEGAVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHH-----HTTCEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHH-----HcCCCEEEechHH
Confidence 4599999999998542 122334444432 1234788888653
No 215
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.04 E-value=0.0023 Score=41.17 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCeEEEEeeCCCCC--C---cCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHH
Q psy12794 42 RDAILVILANKQDMK--N---CMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLND 93 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 93 (106)
..+|+++++||.|.. + ......+.+... ..+.+++.+||+...++.+
T Consensus 200 t~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~-----~~g~~vv~iSAk~E~el~e 251 (368)
T 2dby_A 200 TAKPVIYVANVAEEDLPDGRGNPQVEAVRRKAL-----EEGAEVVVVSARLEAELAE 251 (368)
T ss_dssp GGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHH-----HHTCEEEEECHHHHHHHHT
T ss_pred hcCCeEEeccccHHhhcccchhhHHHHHHHHHH-----HcCCeEEEeechhHHHHHH
Confidence 358999999999842 2 111233444332 1235899999987544443
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.026 Score=36.52 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=31.6
Q ss_pred hhccCCeEEEEEECCCcchH-HHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRI-GISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
..++||++++|+|+++|... +.+...+..+ ...+.++|.+++.||.|.
T Consensus 146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred HHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 46789999999999876332 2222223222 223456899999999995
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.03 E-value=0.18 Score=33.90 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=49.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeE-EEEeeCCCCCCcCC-HHHHHHHhCCCCc------CCCc---
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL-VILANKQDMKNCMS-VAEVHRALGLENL------KDRT--- 77 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~-~~~~~~~~~~~~~------~~~~--- 77 (106)
.+|.+++|+|++........ ...+ .. ..|+ .+|.||+|...... ...+...++..-. ....
T Consensus 213 ~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~ 284 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEP 284 (504)
T ss_dssp CCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEEC
T ss_pred cCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhc
Confidence 78999999999865332111 2222 11 1464 89999999764332 1233344432110 0001
Q ss_pred -eEEEEccccCCCC-hHHHHHHHHHH
Q psy12794 78 -FQIFKTSAKEGEG-LNDSMDWLSNA 101 (106)
Q Consensus 78 -~~~~~~sa~~~~~-v~~~~~~l~~~ 101 (106)
.+...+|+..|.| +.++++++.+.
T Consensus 285 f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 285 FKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1234579999999 99999888754
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.52 E-value=0.057 Score=35.53 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=23.1
Q ss_pred EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 13 IIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 13 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
+.|+.|...+.+..++ .+.+.+. .++|+++|.||+|...
T Consensus 152 v~fI~d~~~~l~~~Di--eilk~L~----~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 152 LYFIAPTGHSLKSLDL--VTMKKLD----SKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEECCCC---CHHHH--HHHHHTC----SCSEEEEEESCGGGSC
T ss_pred EEEEeCCCCCCCHHHH--HHHHHHh----hCCCEEEEEcchhccc
Confidence 5566666544333332 3444443 4689999999999654
No 219
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.93 Score=29.35 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHH
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~ 102 (106)
...|.+++.||+|.. ..++....... ..++.+|+..+.|++.+.+...+.+
T Consensus 248 ~~~p~i~v~nKid~~---~~eele~l~~~-------~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL---SIEELELLYRI-------PNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGS---CHHHHHHHTTS-------TTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEeccccc---CHHHHHHHhcc-------cchhhhhhhhcccchhHHHHHHHHc
Confidence 347999999999954 33344433321 1467899999999999988877665
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.34 E-value=0.64 Score=30.81 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
..+|.+++|+|++........ ...+... -.+..+|.||.|...
T Consensus 211 ~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 211 IHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSCS
T ss_pred hcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCcc
Confidence 357889999998764332222 2222222 235578999999653
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.61 E-value=1.9 Score=26.41 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=27.8
Q ss_pred cCCeEEEEEECC-CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 9 NTDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 9 ~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
.++++++++|.. .+-+..+. .+...+.. . .++++|.+|.|...
T Consensus 111 Ral~~lllldep~~gL~~lD~--~~l~~L~~---~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLDL--EFMKHLSK---V-VNIIPVIAKADTMT 154 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHHH--HHHHHHHT---T-SEEEEEETTGGGSC
T ss_pred eeeeeeEEEecCCCcCCHHHH--HHHHHHHh---c-CcEEEEEeccccCC
Confidence 468889999965 33333332 23333443 3 89999999999654
No 222
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=81.77 E-value=4.7 Score=23.39 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=29.6
Q ss_pred hhhhhccCCeEEEEEECCCcc---hHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRD---RIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
|..-+..+|++|++...=+.. .+.....|+.+......+.+||+.++..=
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S 113 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS 113 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence 455688999999987654432 23333333322122344578999998754
No 223
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=80.60 E-value=0.93 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=15.4
Q ss_pred hhhhhccCCeEEEEEECCCc
Q psy12794 3 WRCYYSNTDAIIYVVDSSDR 22 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~ 22 (106)
|..+++++|++++|+|+++.
T Consensus 110 ~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 110 FLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp HHHHHHTSSSEEEEEEC---
T ss_pred HHHHHHhcCeEEEEEecCCC
Confidence 56789999999999999753
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=78.26 E-value=1.6 Score=28.63 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=37.1
Q ss_pred CCCeEEEEeeCCCCC---------CcCCHHHHHHHhCCCC-----cC-CCceEEEEccc--cCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMK---------NCMSVAEVHRALGLEN-----LK-DRTFQIFKTSA--KEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~---------~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~sa--~~~~~v~~~~~~l~~~~~ 103 (106)
.++|+++|.||.|+. +.....++.+.+.... .. .....++.+|+ .++.|++++.+.+.+.+.
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 368999999999952 1123333332222110 00 11235677888 667789999999987764
No 225
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=76.31 E-value=9.1 Score=22.23 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=31.0
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhc--CcCCCCCeEEEEeeC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLK--EEELRDAILVILANK 52 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK 52 (106)
..-+..+|++|++...=+..-...+..++..+.. ...+.++|+.++.+=
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 3447789999999876544333334444544433 134568999998875
No 226
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=74.17 E-value=11 Score=22.08 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=40.9
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 70 (106)
..+..+|.+++++.++ ..+.......+. .+.........+-+|.|+.+........++.+.++.
T Consensus 136 ~~l~~ad~viiv~~~~-~~~~~~~~~~~~-~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~ 199 (245)
T 3ea0_A 136 WVLEHLDELCIVTTPS-LQSLRRAGQLLK-LCKEFEKPISRIEIILNRADTNSRITSDEIEKVIGR 199 (245)
T ss_dssp HHGGGCSEEEEEECSS-HHHHHHHHHHHH-HHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHHTS
T ss_pred HHHHHCCEEEEEecCc-HHHHHHHHHHHH-HHHHhCCCccceEEEEecCCCCCCCCHHHHHHHhCC
Confidence 4567799999998865 334555554343 333332234568899999996655566677777763
No 227
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=73.64 E-value=9 Score=21.99 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=32.2
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC---------cCCCCCeEEEEeeCCC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE---------EELRDAILVILANKQD 54 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~ilv~nK~D 54 (106)
..-+..+|++|+....=...-...+..++..+... ..+.++|+.++.+--.
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 34577899999988664443334455556555431 2356799988877644
No 228
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=71.77 E-value=12 Score=21.70 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=30.7
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
..-+..+|++|+....=+..-...+..++..+. ...+.++|+.++.+
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~-~~~l~gK~~~~v~t 126 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILD-TDALTGMPTIIAAT 126 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSC-TTTTTTCEEEEEEE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhh-hhhcCCCEEEEEEe
Confidence 345778999999987754443444455554443 23457899998887
No 229
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=67.29 E-value=16 Score=21.09 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=30.2
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhc--CcCCCCCeEEEEeeC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLK--EEELRDAILVILANK 52 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK 52 (106)
..-+..+|++|+....-+..-...+..++..+.. ...+.++|+.++.+-
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s 117 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSS 117 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEEC
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeC
Confidence 3457789999999876544333334444444432 224568999998864
No 230
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=67.12 E-value=14 Score=22.33 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=30.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC----cCCCCCeEEEEeeC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE----EELRDAILVILANK 52 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK 52 (106)
.-+..+|++|+....-+..-...+..++..+... ..+.++|+.++.+-
T Consensus 94 ~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 94 ELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 4577899999998775544344444455444321 23567999988885
No 231
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=65.71 E-value=9.7 Score=21.65 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=29.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~ 53 (106)
-+..+|++|+....-...-...+..++..+... ..+.++|+.++.+--
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~g 118 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASA 118 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECS
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCC
Confidence 467899999987553332233444555554332 134678999988863
No 232
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=65.71 E-value=18 Score=23.55 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=36.7
Q ss_pred CCCeEEEEeeCCCCC---C-cCCHHHHHHHhCCCCcCCCceEEEEccccC---------------------CCChHHHHH
Q psy12794 42 RDAILVILANKQDMK---N-CMSVAEVHRALGLENLKDRTFQIFKTSAKE---------------------GEGLNDSMD 96 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---------------------~~~v~~~~~ 96 (106)
..+|++.++|+.|.. + ......+.+.... ...+.+++.+||+. +.|++.+..
T Consensus 223 t~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~---~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~ 299 (392)
T 1ni3_A 223 TAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDE---NSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIV 299 (392)
T ss_dssp GGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHT---TSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred ccCceEEEEEecchhhcccchHHHHHHHHHHHh---cCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHH
Confidence 358999999999832 1 3345566665532 11235688899885 567777766
Q ss_pred HHHHHH
Q psy12794 97 WLSNAL 102 (106)
Q Consensus 97 ~l~~~~ 102 (106)
...+.+
T Consensus 300 ~~~~~L 305 (392)
T 1ni3_A 300 TGYNAL 305 (392)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655443
No 233
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=62.76 E-value=24 Score=21.62 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=34.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCCCCcCCHHHHHHHhC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~~~~~~~~ 69 (106)
..+..+|.++++..++ ..+.......+..+.......+.+++ +|.|+.+.. ....++.+.++
T Consensus 175 ~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~~~~~~g 237 (307)
T 3end_A 175 APLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDRFCKETN 237 (307)
T ss_dssp GGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHHHHHHHT
T ss_pred HHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHHHHHHcC
Confidence 3467799999998764 33445544433333221111345554 899999832 23345555554
No 234
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=61.89 E-value=20 Score=20.56 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=32.4
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 53 (106)
-+..+|++|+.+..=.-.-+..+..|+.+.... ..+.+++++++.+--
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 367899999999876554455566677766431 124578888887764
No 235
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=60.76 E-value=20 Score=20.18 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=28.3
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
.-+..+|++|+....-...-...+..++.++.. .+.++|+.++.+
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 346789999999887554333444445544432 246788887754
No 236
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=60.22 E-value=21 Score=20.25 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=24.7
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEe
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILA 50 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 50 (106)
.++.||++|.++|...+++-.... +--... .++|++++.
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~E--iGyA~a----lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFX--IGFMRA----MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHH--HHHHHH----TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceee--hhhHhh----CCCeEEEEE
Confidence 367899999999977665433322 211111 468998884
No 237
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=60.15 E-value=22 Score=21.66 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=32.4
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANKQD 54 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~D 54 (106)
+..+|++|+.+.+-.-.-...+..|+.++... ..+.+++++++.+---
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 67899999999886544445566677766431 1245788888887543
No 238
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=60.12 E-value=21 Score=20.06 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=25.6
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
.++.||++|.++|..++++-.... +--... .++|++++..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~E--iGyA~A----~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGME--LGYALS----QGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHH--HHHHHH----TTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHH--HHHHHH----CCCeEEEEEcCC
Confidence 367899999999865444332221 211111 478998887554
No 239
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=59.80 E-value=20 Score=23.59 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=25.5
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCC-e-EEEEeeCCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDA-I-LVILANKQDMKN 57 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~~~ 57 (106)
.+|.+++|+|++.... .......+ .. .. | ..++.||+|...
T Consensus 210 ~~d~vllVvda~~g~~---~~~~~~~~-~~----~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQQ---AGIQAKAF-KE----AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CCSEEEEEEEGGGGGG---HHHHHHHH-HT----TSCSCEEEEEECSSSCS
T ss_pred cCcceeEEeeccccHH---HHHHHHHH-hh----cccCCeEEEEeCCCCcc
Confidence 6899999999865432 11122222 21 23 4 889999999753
No 240
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=58.96 E-value=24 Score=20.43 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=32.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--------cCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--------EELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D 54 (106)
-+..+|++|+.+..=.-.-+..+..|+.+.... ..+.+++++++.+--.
T Consensus 55 ~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~ 111 (192)
T 3f2v_A 55 LIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGA 111 (192)
T ss_dssp HHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESS
T ss_pred HHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCC
Confidence 467899999999875544444556677776431 2346788888777543
No 241
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=57.97 E-value=25 Score=20.29 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=30.0
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 57 (106)
..+..+|.+++++.++. .+.......+..+... .+.++.++.|+.+...
T Consensus 86 ~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 86 ALADGCDLLVIPSTPDA-LALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred HHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 45678899999987643 3444444333332221 1456889999998643
No 242
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=57.87 E-value=23 Score=19.93 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=30.3
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcC--CCCCeEEEEeeCCCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEE--LRDAILVILANKQDMK 56 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~ 56 (106)
..+..+|.+++++.++... ......+. .+.... ..+.++.+|.|+.+..
T Consensus 93 ~~l~~ad~viiv~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 93 AAVMVSDLVIIPVTPSPLD--FSAAGSVV-TVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHHHHCSEEEEEECSCTTT--HHHHHHHH-HHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHHHHCCEEEEEecCCHHH--HHHHHHHH-HHHHHHHhCCCCcEEEEEeccCCC
Confidence 3456789999999876543 44444333 333211 1246779999999853
No 243
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=57.06 E-value=21 Score=20.35 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=28.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
-+..+|++|+....-...-...+..++.. +....+.++|+.++++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~-l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDI-LPQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTT-SCTTTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHh-ccccccCCCEEEEEEE
Confidence 46689999999877544333333333333 2223456799999988
No 244
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=55.99 E-value=12 Score=25.72 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=13.2
Q ss_pred CCCeEEEEeeCCCCCC
Q psy12794 42 RDAILVILANKQDMKN 57 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~ 57 (106)
.+.+.++|.||.|+..
T Consensus 213 ~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 213 EGDRTIGILTKPDLVD 228 (608)
T ss_dssp SCCSEEEEEECGGGSS
T ss_pred cCCceEEEecchhhcC
Confidence 4678999999999754
No 245
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=55.56 E-value=25 Score=20.30 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=31.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcC----------------cCCCCCeEEEEeeCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKE----------------EELRDAILVILANKQ 53 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~p~ilv~nK~ 53 (106)
+..+|++|+....-.-.-...+..|+.++... ..+.+++.+++.+--
T Consensus 85 l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 85 LFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 67899999999876554455566667766321 124578888887754
No 246
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=54.80 E-value=10 Score=21.18 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=28.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
.-+..+|++|+....-+..-+..+..++.. +....+.++|+.++++--
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~-l~~~~~~gK~~~~~~~sg 106 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDF-LSSEQFKYKPVALLAVAG 106 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHT-CCHHHHTTCEEEEEEECC
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHH-hCHhhhCCCcEEEEEECC
Confidence 346789999999877544333344444432 221223578998888643
No 247
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=53.52 E-value=26 Score=19.73 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=30.3
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~ 53 (106)
-+..+|++|+....-...-...+..++.++... ..+.++++.++.+--
T Consensus 83 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T 1t5b_A 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 (201)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECS
T ss_pred HHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecC
Confidence 466899999998765443344455566665421 124678888888743
No 248
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=52.68 E-value=25 Score=20.61 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=27.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
-+++++.+|+++......+. -+..+++..... .++|+|+|--..+
T Consensus 76 RI~~Sk~vIllIs~~T~~s~-~v~wEIe~Ai~~---~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 76 RLDNSKNIILFLSSITANSR-ALREEMNYGIGT---KGLPVIVIYPDYD 120 (189)
T ss_dssp HHHTEEEEEEECCTTCCCCH-HHHHHHHHHTTT---TCCCEEEEETTCC
T ss_pred HHHhcCcEEEEEecCccccc-hhHHHHHHHHHh---cCCcEEEEECCcc
Confidence 36688888888877655442 333334443322 5789988876644
No 249
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=52.63 E-value=18 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=24.7
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
+.+.+++|+|++........ ...+... -.+..++.||.|..
T Consensus 211 ~pd~vlLVlDa~~gq~a~~~---a~~f~~~----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYDL---ASRFHQA----SPIGSVIITKMDGT 251 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHHH---HHHHHHH----CSSEEEEEECGGGC
T ss_pred CCcceEEEEeCccchHHHHH---HHHHhcc----cCCcEEEEeccccc
Confidence 46889999998754332222 2222111 14678899999964
No 250
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=51.95 E-value=31 Score=19.56 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=26.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
.+++||++|.++|...+++-.... +--.. . .++|++++.+-.-.
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~E--iG~A~-a---~gkPVi~~~~D~R~ 109 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASE--IGVAY-A---KGIPVVALYTDSRQ 109 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHH--HHHHH-H---TTCCEEEECCCGGG
T ss_pred HHHHCCEEEEECCCCCCCCCHHHH--HHHHH-H---CCCEEEEEEcCccc
Confidence 367899999999866444332221 11111 1 46898887766543
No 251
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=51.54 E-value=21 Score=18.82 Aligned_cols=41 Identities=10% Similarity=0.025 Sum_probs=23.0
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
++.++++|.+.+.....+. -+..++.. ... .++|++.|.--
T Consensus 36 I~~~~~vIvL~G~~t~~s~-wv~~EI~~-A~~---~gkpIigV~~~ 76 (111)
T 1eiw_A 36 PEDADAVIVLAGLWGTRRD-EILGAVDL-ARK---SSKPIITVRPY 76 (111)
T ss_dssp SSSCSEEEEEGGGTTTSHH-HHHHHHHH-HTT---TTCCEEEECCS
T ss_pred cccCCEEEEEeCCCcCCCh-HHHHHHHH-HHH---cCCCEEEEEcC
Confidence 5788999999877543221 12222322 222 57887776543
No 252
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=50.35 E-value=29 Score=21.49 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=30.0
Q ss_pred hhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC----cCCCCCeEEEEeeC
Q psy12794 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE----EELRDAILVILANK 52 (106)
Q Consensus 4 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK 52 (106)
..-+..+|++|++...-+..-...+..++..+... ..+.++|+.++.+-
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ts 170 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVS 170 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEEC
Confidence 34577899999988764433333344445444321 23467999888874
No 253
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=49.78 E-value=34 Score=19.47 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=31.4
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhc-------CcCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLK-------EEELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~ilv~nK~D 54 (106)
-+..+|++|+.+..-.-.-+..+..|+.+... ...+.+++++++.+--.
T Consensus 48 ~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~ 103 (177)
T 3ha2_A 48 LLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGD 103 (177)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESS
T ss_pred HHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCC
Confidence 46789999999987544444445556666432 12346788888877543
No 254
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=49.40 E-value=34 Score=19.30 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=29.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQD 54 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D 54 (106)
+.++|++|+....-...-...+..++.++... ..+.++++.++++--.
T Consensus 50 l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 50 VLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred HHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 45789999988775444344455555554320 2346789998888543
No 255
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=48.38 E-value=37 Score=19.40 Aligned_cols=47 Identities=4% Similarity=-0.084 Sum_probs=30.6
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK 52 (106)
-+..+|++|+....-...-...+..++.++... ..+.+++++++.+-
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~ 149 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSN 149 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEE
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEec
Confidence 367899999999876544444556666665431 11357888888764
No 256
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=48.04 E-value=29 Score=18.13 Aligned_cols=45 Identities=7% Similarity=0.102 Sum_probs=25.9
Q ss_pred hccCCeEEEEEECCCcc-hHH-HHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 7 YSNTDAIIYVVDSSDRD-RIG-ISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
+.++|.+++....-... ... .+..++..+.. .+.++++.++++--
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g 90 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYG 90 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEES
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecC
Confidence 45788888887653211 111 24444544432 34678999888753
No 257
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=47.03 E-value=32 Score=18.29 Aligned_cols=78 Identities=15% Similarity=0.327 Sum_probs=41.0
Q ss_pred hhhhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEE
Q psy12794 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFK 82 (106)
Q Consensus 3 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (106)
|.. |.+.|.++++.. ++. . |+..++....-.+..++++.|..|.. ...+..+.+. +.+..+-.
T Consensus 72 wer-ypqldvvvivtt-ddk-e------wikdfieeakergvevfvvynnkddd---rrkeaqqefr-----sdgvdvrt 134 (162)
T 2l82_A 72 WER-YPQLDVVVIVTT-DDK-E------WIKDFIEEAKERGVEVFVVYNNKDDD---RRKEAQQEFR-----SDGVDVRT 134 (162)
T ss_dssp HHH-CTTCCEEEEEEC-CCH-H------HHHHHHHHHHHTTCEEEEEEECSCHH---HHHHHHHHHC-----CSSCEEEE
T ss_pred HHh-CCCCcEEEEEec-CcH-H------HHHHHHHHHHhcCcEEEEEecCCCch---hHHHHHHHhh-----hcCceeee
Confidence 444 467777776642 222 1 22222221111468888888887732 2344555553 45666666
Q ss_pred ccccCCCChHHHHHHHHHHH
Q psy12794 83 TSAKEGEGLNDSMDWLSNAL 102 (106)
Q Consensus 83 ~sa~~~~~v~~~~~~l~~~~ 102 (106)
+|-+ +++.+.+.+.+
T Consensus 135 vsdk-----eelieqvrrfv 149 (162)
T 2l82_A 135 VSDK-----EELIEQVRRFV 149 (162)
T ss_dssp ESSH-----HHHHHHHHHHH
T ss_pred cCCH-----HHHHHHHHHHH
Confidence 6654 45555554433
No 258
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=46.36 E-value=44 Score=19.78 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=31.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANKQD 54 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK~D 54 (106)
+..+|++|+.+..-.-.-...+..++.+.... ..+.+++.+++.+--.
T Consensus 90 l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 90 VREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 67899999999875444444555666665421 1346788888877654
No 259
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=46.19 E-value=48 Score=20.12 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.7
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDMK 56 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~ 56 (106)
...+|.+++|+..... +...+...+. .+.. .+.+++ +|.|+.|..
T Consensus 212 ~~~aD~vilVv~~~~~-~~~~~~~~~~-~l~~---~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 212 SKFTGNVVYVVNSENN-NKDEVKKGKE-LIEA---TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHCEEEEEEETTSC-CHHHHHHHHH-HHHT---TTCEEEEEEEEEECC-
T ss_pred HHHCCEEEEEEeCCCC-cHHHHHHHHH-HHHh---CCCCEEEEEEeCCcCC
Confidence 3568999999987643 4444444333 3333 345655 889999853
No 260
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=45.47 E-value=27 Score=19.68 Aligned_cols=49 Identities=8% Similarity=-0.080 Sum_probs=28.4
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhc---CcCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLK---EEELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D 54 (106)
-+.++|++|+....-...-...+..++.++.. ...+.++++.++++---
T Consensus 68 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 119 (200)
T 2a5l_A 68 DLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTAS 119 (200)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSC
T ss_pred HHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCC
Confidence 35689999999876543333333434433211 01246788888887643
No 261
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=44.31 E-value=30 Score=19.20 Aligned_cols=47 Identities=9% Similarity=-0.058 Sum_probs=27.7
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC----------cCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE----------EELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~p~ilv~nK 52 (106)
-+..+|++|+....-...-...+..++.++... ..+.++++.++.+-
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 124 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVG 124 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEE
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeC
Confidence 467899999998875443333344444433210 01246888888874
No 262
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=43.49 E-value=55 Score=20.08 Aligned_cols=46 Identities=7% Similarity=-0.015 Sum_probs=28.2
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
...+|++++|+..... +..++...+..+.+. .....-+|.|+.+..
T Consensus 222 ~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 222 GRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRR 267 (286)
T ss_dssp TTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCC
T ss_pred HHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCcccc
Confidence 4568999999987643 344444434333222 234556888999854
No 263
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=43.00 E-value=39 Score=18.98 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=25.1
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
.++.||++|.+++..+..+.-++- -... .++|++++.+..+
T Consensus 74 ~i~~aD~vva~~~~~d~Gt~~EiG----yA~a----lgKPVi~l~~~~~ 114 (165)
T 2khz_A 74 WLQQADVVVAEVTQPSLGVGYELG----RAVA----LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHCSEEEEECSSCCHHHHHHHH----HHHH----TCSSEEEEECTTT
T ss_pred HHHhCCEEEEECCCCCCCHHHHHH----HHHH----CCCEEEEEEcCCC
Confidence 477899999988733333322222 1111 4799999877764
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=42.07 E-value=58 Score=20.15 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=25.2
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCe-EEEEeeCCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI-LVILANKQDMK 56 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~ 56 (106)
...+|.+++|+|++.... .......+.. ..| ..++.||.|..
T Consensus 210 ~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGGC
T ss_pred HhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCCC
Confidence 346899999999864322 1112222221 234 67889999964
No 265
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=42.03 E-value=52 Score=19.39 Aligned_cols=46 Identities=15% Similarity=-0.024 Sum_probs=28.3
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhc---CcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLK---EEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK 52 (106)
+..+|++|+....-...-+..+..++.++.. ...+.++|++++.+-
T Consensus 77 l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~ 125 (242)
T 1sqs_A 77 LLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVA 125 (242)
T ss_dssp HHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEE
T ss_pred HHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeC
Confidence 6789999998877544333344445555421 113457888887765
No 266
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=39.94 E-value=91 Score=21.56 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=36.8
Q ss_pred CCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEccccCCCChHHHHHHHHHHHh
Q psy12794 42 RDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103 (106)
Q Consensus 42 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~~~~l~~~~~ 103 (106)
.+.|++|+.|+..-......+-+.+.. ...+..+..+=++-|+|-.++-+.+.+.+.
T Consensus 373 fGvpvVVaiN~F~tDT~aEi~~v~~~~-----~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAELNLLYELC-----AKAGAEVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp TTCCEEEEEECCTTCCHHHHHHHHHHC-----CSSEEEEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHH-----HHcCCCEEEEecccchhHHHHHHHHHHHHh
Confidence 589999999998732222222233333 345666666667778888888877777654
No 267
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=39.46 E-value=63 Score=19.57 Aligned_cols=81 Identities=12% Similarity=0.225 Sum_probs=36.4
Q ss_pred CeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhCCCCcCCCceEEEEcccc----
Q psy12794 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAK---- 86 (106)
Q Consensus 11 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---- 86 (106)
.++|+|++...+...+. +.+.+.... .+..+++|+.-.+. ......+..+..... ...+++++.....
T Consensus 104 ggII~~f~~p~~~~~~~----i~~~~~~~~-~dg~~v~Vg~~~~~-~~~~~de~~e~~~~~--~~~GfE~V~~~~~~~~~ 175 (233)
T 3uc9_A 104 AGIILITDIRQTKPQEL----LHQFMIAAH-RNTFVVLVNVNEEV-EQDEIDELNEIWSNA--FTNVIEFVNWKRSKPTV 175 (233)
T ss_dssp EEEEEEECHHHHCGGGT----HHHHHHHSC-TTCEEEEEECCTTC-CHHHHHHHHHHHTTS--SSSCEEEEECC----CC
T ss_pred ceEEEEEeCCCcchHHH----HHHHhccCC-CCceEEEEecCCcc-CCCchhhHHHHHHHH--HhcCeEEEEecCCCccc
Confidence 67899987543333332 233333322 23344444433221 111222333333211 3357888876432
Q ss_pred ------CCCChHHHHHHHH
Q psy12794 87 ------EGEGLNDSMDWLS 99 (106)
Q Consensus 87 ------~~~~v~~~~~~l~ 99 (106)
+..|+..+++.|.
T Consensus 176 ~~ne~gE~~Gi~RI~E~Le 194 (233)
T 3uc9_A 176 NHNDYGEKLGLDRIQEIID 194 (233)
T ss_dssp CBCTTSCBCHHHHHHHHHH
T ss_pred ccccccchhCHHHHHHHHH
Confidence 3346666666654
No 268
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=38.57 E-value=81 Score=20.61 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=33.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--------cCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--------EELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D 54 (106)
-+..+|++||.+..-.-.-+..+..|+.+.+.. ..+.+++.+++.+--.
T Consensus 289 ~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~ 345 (413)
T 3l9w_A 289 ALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGG 345 (413)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCC
Confidence 467899999999876554455566677776431 1246788888877644
No 269
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=38.22 E-value=56 Score=18.88 Aligned_cols=59 Identities=12% Similarity=0.029 Sum_probs=33.8
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
..+..+|.+++++.++ ..+........ +..... .-..+.++.|+.+- .....++.+.++
T Consensus 149 ~~l~~aD~viiv~~~~-~~s~~~~~~~~-~~~~~~--~~~~~~~v~N~~~~--~~~~~~~~~~~~ 207 (254)
T 3kjh_A 149 GTAKAVDMMIAVIEPN-LNSIKTGLNIE-KLAGDL--GIKKVRYVINKVRN--IKEEKLIKKHLP 207 (254)
T ss_dssp HHHTTCSEEEEEECSS-HHHHHHHHHHH-HHHHHH--TCSCEEEEEEEECC--HHHHHHHHHHSC
T ss_pred HHHHHCCEEEEecCCC-HHHHHHHHHHH-HHHHHc--CCccEEEEEeCCCC--hhHHHHHHHHhc
Confidence 3467789999999875 33444444322 233322 12567889999983 223344555554
No 270
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=37.45 E-value=33 Score=19.69 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=10.1
Q ss_pred hccCCeEEEEEECCC
Q psy12794 7 YSNTDAIIYVVDSSD 21 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~ 21 (106)
..++|+++.++|-..
T Consensus 128 vd~sD~liavyDg~~ 142 (181)
T 2nx2_A 128 IDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHSSEEEEECCTTT
T ss_pred HHHCCEEEEEEcCCC
Confidence 456777787877543
No 271
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=36.64 E-value=58 Score=18.43 Aligned_cols=48 Identities=17% Similarity=0.003 Sum_probs=27.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHh---cCcCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAML---KEEELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~ 53 (106)
-+.++|++|+....-...-...+..++..+. ....+.++|+.++.+--
T Consensus 51 ~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g 101 (193)
T 3d7n_A 51 ALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSA 101 (193)
T ss_dssp HHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECC
Confidence 4568999999876533222233344444332 12234678988888763
No 272
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=36.55 E-value=67 Score=19.07 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=26.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEE-EEeeCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILV-ILANKQDM 55 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~ 55 (106)
.+|.++++..++.. +.......+.. ++. .+.+++ +|.|+.|.
T Consensus 152 ~aD~viiv~~~~~~-s~~~~~~~~~~-l~~---~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQEL-TAVIVEKAINM-AEE---TNTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSSSC-CHHHHHHHHHH-HHT---TTCCEEEEEETTCCE
T ss_pred cCCeEEEEecCccc-hHHHHHHHHHH-HHh---CCCCEEEEEECCCcc
Confidence 68999999877643 44544443333 333 245666 89999873
No 273
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.08 E-value=17 Score=17.69 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEccccCCCChHHHHHHHHHHHhh
Q psy12794 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104 (106)
Q Consensus 79 ~~~~~sa~~~~~v~~~~~~l~~~~~~ 104 (106)
--+.+||.+.+.-.++++.+++.+.+
T Consensus 50 vqitisaendeqakelleliarllqk 75 (96)
T 2jvf_A 50 VQITISAENDEQAKELLELIARLLQK 75 (96)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecChHHHHHHHHHHHHHHHH
Confidence 34678998888888888888777654
No 274
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=34.84 E-value=43 Score=18.32 Aligned_cols=45 Identities=4% Similarity=0.002 Sum_probs=25.7
Q ss_pred hccCCeEEEEEECC-CcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
+.+.|.+++....- ..........++.. +....+.++++.++++-
T Consensus 44 l~~~d~ii~g~p~y~~g~~p~~~~~fl~~-l~~~~l~~k~~~~f~tg 89 (169)
T 1obo_A 44 LNDYQYLIIGCPTLNIGELQSDWEGLYSE-LDDVDFNGKLVAYFGTG 89 (169)
T ss_dssp GGGCSEEEEEEEEETTTEECHHHHHHHTT-GGGCCCTTCEEEEEEEC
T ss_pred HhhCCEEEEEEeeCCCCcCCHHHHHHHHH-hhhcCcCCCEEEEEEEC
Confidence 45789999988763 22222333333322 33334467898888884
No 275
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=41.10 E-value=8.2 Score=22.41 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=25.2
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcC--cCCCCCeEEEEeeC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANK 52 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK 52 (106)
.-+..+|++|++...-+..-...+..++..+... ..+.++|+.++++-
T Consensus 69 ~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 3467889999887654332222223333332211 03457888887753
No 276
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=34.79 E-value=68 Score=18.58 Aligned_cols=47 Identities=6% Similarity=0.106 Sum_probs=30.3
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCCCCCeEEEEeeC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EELRDAILVILANK 52 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ilv~nK 52 (106)
-+..+|++|+....-.-.-...+..++..+... ..+.+++.+++.+-
T Consensus 89 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~ 147 (211)
T 3p0r_A 89 QFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNAR 147 (211)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEE
T ss_pred HHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeC
Confidence 367899999999876544444555666665421 02356888887764
No 277
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=34.53 E-value=63 Score=18.16 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=24.1
Q ss_pred hhccCCeEEEEEEC---CCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDS---SDRDRIGISKEELLAMLKEEELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 53 (106)
.+++||++|.++|+ ..+++-... ++-.... .++|++++.+..
T Consensus 64 ~i~~aD~vVA~ldpf~g~~~D~GTaf--EiGyA~A----lgKPVi~l~~d~ 108 (161)
T 2f62_A 64 MIKDCDAVIADLSPFRGHEPDCGTAF--EVGCAAA----LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHCSEEEEECCCCSSSSCCHHHHH--HHHHHHH----TTCEEEEECSCC
T ss_pred HHHhCCEEEEEecCCCCCCCCCcHHH--HHHHHHH----CCCEEEEEEcCc
Confidence 46789999999983 222222111 1211111 479999987654
No 278
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=33.30 E-value=28 Score=19.56 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=26.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhc---CcCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLK---EEELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~D 54 (106)
-+..+|++|+....-...-...+..++.++.. ...+.++|+.++++--.
T Consensus 65 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 116 (198)
T 3b6i_A 65 ELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT 116 (198)
T ss_dssp GGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESS
T ss_pred HHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCC
Confidence 35688999998766433222333333333211 01246788888877643
No 279
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=31.62 E-value=48 Score=17.85 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=11.1
Q ss_pred CCCeEEEEeeCCCC
Q psy12794 42 RDAILVILANKQDM 55 (106)
Q Consensus 42 ~~~p~ilv~nK~D~ 55 (106)
.+.|++.+.+|.+|
T Consensus 66 ~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 66 NEIKYVSVPKRASL 79 (126)
T ss_dssp TTCCEEEESCSHHH
T ss_pred hCCCEEEECCHHHH
Confidence 57899998887764
No 280
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=31.55 E-value=71 Score=17.83 Aligned_cols=59 Identities=10% Similarity=-0.052 Sum_probs=33.9
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCcCCHHHHHHHhC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 69 (106)
+.+.|.+++.+.+-...-...+..++..+ .+.+++++++++----........+.+.+.
T Consensus 85 l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~~~~g~a~~~l~~~l~ 143 (171)
T 4ici_A 85 IGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSGGSSIGNSATVLKKTYP 143 (171)
T ss_dssp GGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECSSCCSHHHHHHHHHHST
T ss_pred HhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecCCCCcchHHHHHHHHcC
Confidence 55789999998875433333444444443 346789999888753211223344555543
No 281
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=31.41 E-value=84 Score=18.60 Aligned_cols=47 Identities=4% Similarity=-0.076 Sum_probs=29.5
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQD 54 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 54 (106)
..+..+|.+++++.++. .+.......+ +.+.... .+.++.+|.|+.+
T Consensus 162 ~~l~~aD~vivv~~~~~-~s~~~~~~~~-~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 162 NALLCSDYVIIPMTAEK-WAVESLDLFN-FFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp HHHTTCSEEEEEEESCT-THHHHHHHHH-HHHHTTT-CCCCEEEEEEEEC
T ss_pred HHHHHCCeEEEEeCCCh-HHHHHHHHHH-HHHHHHh-ccCCEEEEEeccc
Confidence 34567899999998754 3455444333 3344322 2457789999995
No 282
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=30.99 E-value=61 Score=18.49 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=26.4
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHh---cCcCCCCCeEEEEeeCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAML---KEEELRDAILVILANKQ 53 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~ 53 (106)
-+..+|++|+....-...-...+..++.++. ....+.++++.++.+--
T Consensus 75 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 125 (211)
T 1ydg_A 75 DLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 125 (211)
T ss_dssp HHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCC
Confidence 3567899999876543322233334444321 11224578887777743
No 283
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=30.52 E-value=86 Score=18.50 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=27.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHH---HHHHHhcCcCCCCCeEE-EEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKE---ELLAMLKEEELRDAILV-ILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p~i-lv~nK~D~~ 56 (106)
.+..+|.+++++.++.. +...... .+....... ..+.+++ +|.|+.+..
T Consensus 130 ~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~-~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 130 ALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGL-NPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHT-CTTCEEEEEEEESBCTT
T ss_pred HHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHh-CCCceEEEEEEEeECCC
Confidence 45678999999987642 3333332 222221111 1345664 899999854
No 284
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=30.33 E-value=78 Score=17.90 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=25.4
Q ss_pred cCCeEEEEEECCCcc-hHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 9 NTDAIIYVVDSSDRD-RIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
++|.+++.-|..+.. ..+.....+.. +.. .+.|++.+.---|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~-l~~---~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRI-LSE---AHLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHH-HGG---GCSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHH-HHh---cCCcEEEECCCCCc
Confidence 789999999997654 44444333333 332 24566655444564
No 285
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=30.29 E-value=1.1e+02 Score=19.70 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=30.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.+.+.|++|+.-- .+++++.-.++.-.+.. .++|+++.+...-..
T Consensus 98 ~~~~~dG~VItHG---TDTmeeTA~~Ls~~l~~---~~kPVVlTGAmrP~~ 142 (358)
T 2him_A 98 HYDDYDGFVILHG---TDTMAYTASALSFMLEN---LGKPVIVTGSQIPLA 142 (358)
T ss_dssp HGGGCSEEEEECC---STTHHHHHHHHHHHEET---CCSCEEEECCSSCTT
T ss_pred HHhcCCeEEEecC---chHHHHHHHHHHHHHhc---CCCCEEEeCCCCCCc
Confidence 3557888887754 34677666555444443 578999999887753
No 286
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=29.87 E-value=1.1e+02 Score=19.44 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=30.6
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
.+.+.|++|+.-- .+++++.-.++..++.+ .++|+++.+...-..
T Consensus 70 ~~~~~dG~VItHG---TDTmeeTA~~Ls~ll~~---~~kPVVlTGAqrP~~ 114 (328)
T 1wls_A 70 EVWEYDGIVITHG---TDTMAYSASMLSFMLRN---PPIPIVLTGSMLPIT 114 (328)
T ss_dssp HTTTCSEEEEECC---GGGHHHHHHHHHHHEES---CSSEEEEECCSSCTT
T ss_pred HhccCCeEEEEcC---CchHHHHHHHHHHHHhC---CCCCEEEECCCCCCC
Confidence 3567889887754 45777766545434444 679999999987753
No 287
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=29.06 E-value=48 Score=18.71 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.6
Q ss_pred chhhhhccCCeEEEEEECCC
Q psy12794 2 YWRCYYSNTDAIIYVVDSSD 21 (106)
Q Consensus 2 ~~~~~~~~~d~~i~v~d~~~ 21 (106)
-|+.|...||.+.|.++..=
T Consensus 71 KW~~Y~~~cDRfyfAv~~~~ 90 (153)
T 3dnx_A 71 KWQGYLEWCDRYFWAVDMEF 90 (153)
T ss_dssp TGGGGGGGCSEEEEEECTTS
T ss_pred chHHHHhhcCEEEEeCCCCC
Confidence 49999999999999998753
No 288
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.87 E-value=87 Score=18.00 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=35.7
Q ss_pred hhhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCCCc-CCHHHHHHHhC
Q psy12794 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC-MSVAEVHRALG 69 (106)
Q Consensus 5 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~ 69 (106)
.....+|.++++..++ ..+.......+..+... .....-++.|+.+-... ....++.+.++
T Consensus 129 ~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~~~~~~~ 190 (237)
T 1g3q_A 129 SAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEAAEDVME 190 (237)
T ss_dssp HHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHHHHHHHC
T ss_pred HHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHhC
Confidence 3467789999998764 23444444433333222 22466788999985432 34556666665
No 289
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=28.51 E-value=61 Score=17.99 Aligned_cols=44 Identities=7% Similarity=0.094 Sum_probs=25.1
Q ss_pred hccCCeEEEEEEC-CCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 7 YSNTDAIIYVVDS-SDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 7 ~~~~d~~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
+.+.|.+++.+.. ...........++.. +....+.++++.++++
T Consensus 43 l~~~d~ii~g~pt~~~G~~p~~~~~f~~~-l~~~~l~gk~vavfg~ 87 (175)
T 1ag9_A 43 LEAYDILLLGIPTWYYGEAQCDWDDFFPT-LEEIDFNGKLVALFGC 87 (175)
T ss_dssp HHTCSEEEEECCEETTTEECHHHHHHHHH-HTTCCCTTCEEEEEEE
T ss_pred hhhCCEEEEEEeecCCCcChHHHHHHHhh-hhhcccCCCEEEEEEE
Confidence 4567888887755 222223334433433 3433456788888887
No 290
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=28.31 E-value=48 Score=16.69 Aligned_cols=29 Identities=7% Similarity=-0.152 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 22 RDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
|.+|++.......+ + .++|+++-++..|.
T Consensus 12 P~sy~Da~~I~d~L-r----~~~~VvvNL~~ld~ 40 (87)
T 3p04_A 12 LHSFEDAQVIGGAF-R----DGDAVVFDMSLLSR 40 (87)
T ss_dssp CSSGGGHHHHHHHH-H----TTCCEEEECTTSCH
T ss_pred cCcHHHHHHHHHHH-H----CCCEEEEECCCCCH
Confidence 55788777644444 3 36899998888773
No 291
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=28.00 E-value=37 Score=18.60 Aligned_cols=45 Identities=7% Similarity=-0.026 Sum_probs=25.0
Q ss_pred hccCCeEEEEEECCC-cchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSSD-RDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
+.+.|.+++....-. .........++ +.+....+.++++.++++-
T Consensus 44 l~~~d~ii~g~pty~~g~~p~~~~~f~-~~l~~~~l~gk~~~~f~t~ 89 (169)
T 1czn_A 44 LNAYDYLIIGCPTWNVGELQSDWEGIY-DDLDSVNFQGKKVAYFGAG 89 (169)
T ss_dssp GGGCSEEEEECCEETTTEECHHHHHHG-GGGGGSCCTTCEEEEEEEC
T ss_pred HhhCCEEEEEecccCCCcCCHHHHHHH-HHhhhhccCCCEEEEEEEC
Confidence 456788888776532 22222233223 2333334567899888874
No 292
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=27.95 E-value=97 Score=18.22 Aligned_cols=49 Identities=6% Similarity=0.107 Sum_probs=31.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcC------------cCC-CCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE------------EEL-RDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~-~~~p~ilv~nK~D 54 (106)
-+..+|++|+....-...-...+..++.++... ..+ .+++.+++.+--.
T Consensus 91 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg 152 (223)
T 3u7i_A 91 QFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGG 152 (223)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSS
T ss_pred HHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCC
Confidence 467899999999876544444555666665431 013 4688888777543
No 293
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=27.91 E-value=85 Score=17.59 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=27.8
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHh---cCcCCCCCeEEEEeeCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAML---KEEELRDAILVILANKQD 54 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ilv~nK~D 54 (106)
-+.++|++|+....-...-...+..++.++. ....+.++|+.++.+--.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEAST 118 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSS
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCC
Confidence 3567899999887644332333334443321 112346788888777543
No 294
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=27.74 E-value=92 Score=17.92 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=19.5
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHH
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAM 35 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 35 (106)
-+..+|++|+.+..=.-.-+..+..|+.+.
T Consensus 67 ~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 67 NFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 467899999999875544344444555543
No 295
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.36 E-value=1.1e+02 Score=18.91 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=26.2
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 144 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES---TPLPVMLY 144 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 3678888877655555667777777666654 46787753
No 296
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=27.04 E-value=1.2e+02 Score=18.87 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=26.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 99 Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 136 (300)
T 3eb2_A 99 GADGILAILEAYFPLKDAQIESYFRAIADA---VEIPVVIY 136 (300)
T ss_dssp TCSEEEEEECCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEE
Confidence 688888887665566777777767666554 45787653
No 297
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.99 E-value=91 Score=18.33 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=27.3
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCCC
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK 56 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 56 (106)
....+|.+++++.++. .+.......+.. +... .....-+|.|+.+..
T Consensus 129 ~~~~ad~vi~v~~~~~-~~~~~~~~~~~~-l~~~--~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 129 AIAAAQELLLVVNPEI-SSITDGLKTKIV-AERL--GTKVLGVVVNRITTL 175 (263)
T ss_dssp HHHHSSEEEEEECSSH-HHHHHHHHHHHH-HHHH--TCEEEEEEEEEECTT
T ss_pred HHHHCCEEEEEeCCCh-hHHHHHHHHHHH-HHhc--CCCeeEEEEccCCcc
Confidence 4567899999887642 344444433322 2221 224566899999853
No 298
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=26.99 E-value=94 Score=19.71 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=21.3
Q ss_pred eEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 12 AIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 12 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
-+|+-+|+++ -|-.+ +...++.+.++|++|..|
T Consensus 3 R~I~hiD~d~--Fyasv-----E~~~~P~L~~kPv~V~~~ 35 (356)
T 4dez_A 3 KWVLHVDLDQ--FLASV-----ELRRRPDLRGQPVIVGGS 35 (356)
T ss_dssp EEEEEEEETT--HHHHH-----HHHHCGGGTTSCEEEEEC
T ss_pred eEEEEEcCCc--HHHHH-----HhhhCccccCCeEEEEeC
Confidence 3678889865 24333 234466677899988765
No 299
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.93 E-value=75 Score=16.61 Aligned_cols=44 Identities=7% Similarity=0.041 Sum_probs=24.9
Q ss_pred hccCCeEEEEEECCCcc-hHH-HHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 7 YSNTDAIIYVVDSSDRD-RIG-ISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
+.+.|.+++....-... ... ....++..+... +.++++.++++-
T Consensus 43 l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~ 88 (138)
T 5nul_A 43 LLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSY 88 (138)
T ss_dssp HTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEE
T ss_pred HhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEec
Confidence 45788888887653221 111 233344444322 467898888874
No 300
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=26.47 E-value=1.2e+02 Score=18.86 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=25.9
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 107 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 144 (306)
T 1o5k_A 107 GANGVLVVTPYYNKPTQEGLYQHYKYISER---TDLGIVVY 144 (306)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 688888876655555667777777666554 46787754
No 301
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=26.41 E-value=1.1e+02 Score=19.14 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=28.2
Q ss_pred hccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeCCCC
Q psy12794 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55 (106)
Q Consensus 7 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 55 (106)
+.++|++|+.-|+++.....+....+ +.+... ...++++|.-..|.
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~~~~~-~~L~~l--~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEVKKFN-DWLGNL--PYEYKIVIAGNHEL 122 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHHHHHH-HHHHTS--CCSEEEECCCTTCG
T ss_pred cCCCCEEEECCcccCCCCHHHHHHHH-HHHHhC--CCCeEEEEcCCccc
Confidence 35789999999998776665554433 334331 23455555555564
No 302
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=26.36 E-value=1.2e+02 Score=18.85 Aligned_cols=44 Identities=5% Similarity=0.077 Sum_probs=29.3
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEe----eCCCC
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILA----NKQDM 55 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~ 55 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-- +..++
T Consensus 110 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn~P~~tg~~l 157 (304)
T 3l21_A 110 GAHGLLVVTPYYSKPPQRGLQAHFTAVADA---TELPMLLYDIPGRSAVPI 157 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHTS---CSSCEEEEECHHHHSSCC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCccccCCCC
Confidence 688888876554555677777777666655 468877752 35554
No 303
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=26.04 E-value=1e+02 Score=19.69 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=21.8
Q ss_pred EEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 13 IIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 13 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
+|+.+|+++ -|-.+ +...++.+.++|++|..+.
T Consensus 2 ~i~hiD~d~--Fyasv-----E~~~~P~L~~~Pv~V~~~~ 34 (362)
T 4f4y_A 2 IVIFVDFDY--FFAQV-----EEVLNPQYKGKPLVVCVYS 34 (362)
T ss_dssp CEEEEECTT--HHHHH-----HHHHCGGGTTSCEEEEEEC
T ss_pred EEEEEecCC--HHHHH-----HhHhCccccCCeEEEecCC
Confidence 578899855 34333 2334666778999998863
No 304
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=25.79 E-value=1.2e+02 Score=18.66 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=25.0
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 96 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 133 (292)
T 2ojp_A 96 GIVGCLTVTPYYNRPSQEGLYQHFKAIAEH---TDLPQILY 133 (292)
T ss_dssp SCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 678887776555555667777667666554 45787653
No 305
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=25.63 E-value=1.3e+02 Score=19.10 Aligned_cols=38 Identities=5% Similarity=-0.067 Sum_probs=25.7
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 126 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiilY 163 (343)
T 2v9d_A 126 GADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVMLY 163 (343)
T ss_dssp TCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 688888886655555667777777666654 46787653
No 306
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.28 E-value=1.1e+02 Score=18.85 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=25.2
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.++|+++.+-..-.+.+-+++..++..+... .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 132 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQE---VDIPIIIY 132 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 3678888876555555667776666666554 46786653
No 307
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=24.13 E-value=77 Score=15.80 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=15.0
Q ss_pred EEEEEECCCcchHHHHHHHHHHH
Q psy12794 13 IIYVVDSSDRDRIGISKEELLAM 35 (106)
Q Consensus 13 ~i~v~d~~~~~~~~~~~~~~~~~ 35 (106)
++++||++++.....+...+..+
T Consensus 6 ~lV~YDI~~~kr~~kv~k~l~~y 28 (90)
T 1zpw_X 6 YAVAYDIPDDTRRVKLANLLKSY 28 (90)
T ss_dssp EEEEEECCCHHHHHHHHHHHHTT
T ss_pred EEEEEeCCChHHHHHHHHHHHHh
Confidence 78899998765555555444443
No 308
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=23.69 E-value=1.1e+02 Score=17.19 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=21.9
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
.++.||++|...|.-+..+--++- .... .++|++++.+
T Consensus 65 ~i~~aD~vvA~l~~~d~Gt~~EiG----~A~a----lgkPV~~l~~ 102 (152)
T 4fyk_A 65 WLQQADVVVAEVTQPSLGVGYELG----RAVA----LGKPILCLFR 102 (152)
T ss_dssp HHHHCSEEEEECSSCCHHHHHHHH----HHHH----TTCCEEEEEC
T ss_pred HHHHCCEEEEeCCCCCCCHHHHHH----HHHH----cCCeEEEEEe
Confidence 367899999987732322222221 1111 4689988877
No 309
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=23.46 E-value=1.2e+02 Score=18.73 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=24.8
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 132 (289)
T 2yxg_A 95 GADAVLSITPYYNKPTQEGLRKHFGKVAES---INLPIVLY 132 (289)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 678888876555555667776666666554 45786653
No 310
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=23.38 E-value=1.2e+02 Score=18.75 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=25.1
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.++|+++.+-..-.+.+-+++..++..+... .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 132 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAA---STIPIIVY 132 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 3678888776655555667766666665554 45787753
No 311
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=23.29 E-value=1.2e+02 Score=19.08 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=25.9
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 155 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEA---VAIPQILY 155 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---SCSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 3678888876555555666777666666554 46787765
No 312
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=23.21 E-value=1.2e+02 Score=18.86 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=25.8
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 140 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQS---VDIPVLLY 140 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 3678888876654555666776666666554 46787764
No 313
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.84 E-value=1.2e+02 Score=18.61 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=25.2
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 96 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 133 (291)
T 3tak_A 96 GADAALLVTPYYNKPTQEGLYQHYKAIAEA---VELPLILY 133 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 678888776554555666776666666554 46787764
No 314
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=22.77 E-value=1.2e+02 Score=18.64 Aligned_cols=38 Identities=3% Similarity=-0.198 Sum_probs=24.9
Q ss_pred cCCeEEEEEECCCc-chHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDR-DRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+ .+-+.+..++..+... .+.|+++-
T Consensus 91 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 129 (293)
T 1w3i_A 91 DIVGIASYAPYYYPRMSEKHLVKYFKTLCEV---SPHPVYLY 129 (293)
T ss_dssp CCSEEEEECCCSCSSCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHHHHhh---CCCCEEEE
Confidence 67888887665555 5667777666666554 45786653
No 315
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=22.46 E-value=1.2e+02 Score=18.99 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=25.3
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 117 Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 154 (315)
T 3si9_A 117 GADAVLVVTPYYNRPNQRGLYTHFSSIAKA---ISIPIIIY 154 (315)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 678888876554555666776666666554 46787765
No 316
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=22.39 E-value=1.3e+02 Score=18.74 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=25.4
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
.++|+++.+-..-.+.+-+.+..++..+... .+.|+++-
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 148 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAA---TEVPICLY 148 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 3688888876655555666766666666554 46787653
No 317
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=22.19 E-value=97 Score=20.41 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.2
Q ss_pred ccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEeeC
Q psy12794 8 SNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANK 52 (106)
Q Consensus 8 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 52 (106)
...+-+|+.+|++. -|-.+. ...++.+.++|++|+.+.
T Consensus 6 ~~~~r~I~hiD~d~--FyAsvE-----~~~~P~L~~kPvvV~~~~ 43 (435)
T 4ecq_A 6 TGQDRVVALVDMDC--FFVQVE-----QRQNPHLRNKPCAVVQYK 43 (435)
T ss_dssp CSCSCCEEEEEETT--HHHHHH-----HHHCGGGTTSCEEEEECS
T ss_pred CCCCcEEEEEccch--HHHHHH-----hhhCccccCCcEEEeccC
Confidence 34556889999855 344332 234666678999998874
No 318
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.68 E-value=1.3e+02 Score=18.54 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=25.1
Q ss_pred cCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEE
Q psy12794 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVIL 49 (106)
Q Consensus 9 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 49 (106)
++|+++.+-..-.+.+-+++..++..+... .+.|+++-
T Consensus 102 Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 139 (297)
T 3flu_A 102 GADYTLSVVPYYNKPSQEGIYQHFKTIAEA---TSIPMIIY 139 (297)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 678888876554555666666666666554 46787765
No 319
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.33 E-value=71 Score=15.06 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.2
Q ss_pred CCCChHHHHHHHHHHH
Q psy12794 87 EGEGLNDSMDWLSNAL 102 (106)
Q Consensus 87 ~~~~v~~~~~~l~~~~ 102 (106)
++.|++...+||..+.
T Consensus 43 t~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 43 KGENIEQILDYLFAHS 58 (63)
T ss_dssp HCSCHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHhCC
Confidence 5778999999998764
No 320
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=21.16 E-value=1.4e+02 Score=17.68 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=23.2
Q ss_pred hhccCCeEEEEEECCCcchHHHHHHHHHHHhcCcCCCCCeEEEEee
Q psy12794 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN 51 (106)
Q Consensus 6 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 51 (106)
+.+.+|++|.+ +....+++++.+.+...... ..++|++++..
T Consensus 102 ~~~~sda~I~l--pGG~GTLdElfE~lt~~qlg--~~~kPvvll~~ 143 (216)
T 1ydh_A 102 MAQEAEAFIAL--PGGYGTMEELLEMITWSQLG--IHKKTVGLLNV 143 (216)
T ss_dssp HHHHCSEEEEC--SCSHHHHHHHHHHHHHHHHT--SCCCEEEEECG
T ss_pred HHHhCCEEEEe--CCCccHHHHHHHHHHHHHhc--ccCCCEEEecC
Confidence 35568877765 33345666665443322222 25789887753
Done!