RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12794
(106 letters)
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 170 bits (434), Expect = 5e-56
Identities = 56/105 (53%), Positives = 82/105 (78%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
PYWRCY+S+TDA+IYVVDS+DRDR+G++K EL A+L E+ELR ++L+I ANKQD+ + S
Sbjct: 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LG+ ++ +RT+ I K+S+K G+GL + MDWL L++
Sbjct: 141 EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 169 bits (431), Expect = 7e-56
Identities = 70/104 (67%), Positives = 86/104 (82%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+ M+
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 125
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+E+ +LGL LKDR +QIFKTSA +G GL+++M+WL L+
Sbjct: 126 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 169 bits (431), Expect = 1e-55
Identities = 28/104 (26%), Positives = 56/104 (53%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
W Y AI+Y+VD++D+++I SK EL +L + +L+ +++L NK+D+ +
Sbjct: 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 141
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
E+ + L ++DR + S KE + ++ ++ WL +
Sbjct: 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 168 bits (429), Expect = 1e-55
Identities = 52/105 (49%), Positives = 75/105 (71%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ ++EEL+ ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 168 bits (429), Expect = 2e-55
Identities = 43/105 (40%), Positives = 64/105 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
PYWR Y+ NTD +IYV+DS+DR R + +EL +L+EE+L ++I ANKQD+
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+E+ L L ++DR +QI SA GEG+ D M+W+ +
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 168 bits (427), Expect = 5e-55
Identities = 49/106 (46%), Positives = 71/106 (66%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
W YY+NT+ +I VVDS+DR+RI +++EEL ML E+LR A L+I ANKQD+K CM+
Sbjct: 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 134
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
VAE+ + L L ++KD + I A GEGL ++W+ + L+ L
Sbjct: 135 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 168 bits (427), Expect = 5e-55
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YWR Y+ +TD +I+VVDS+DR R+ + EL ++L EE L A L+I ANKQD+ +S
Sbjct: 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
+ AL L++++ ++I SA GE L +DWL + + +
Sbjct: 137 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 172 bits (437), Expect = 6e-55
Identities = 52/105 (49%), Positives = 75/105 (71%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ ++EEL+ ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
AE+ LGL +L+ R + I T A G+GL + +DWLSN L+
Sbjct: 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 167 bits (424), Expect = 1e-54
Identities = 48/102 (47%), Positives = 69/102 (67%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
W YY+NT+ +I VVDS+DR+RI +++EEL ML E+LR A L+I ANKQD+K CM+
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
VAE+ + L L ++KD + I A GEGL ++W+ + L
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 165 bits (420), Expect = 5e-54
Identities = 51/105 (48%), Positives = 78/105 (74%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
PYWRCYY++T A+I+VVDS+D+DR+ + +EL ML+EEEL+DA L++ ANKQD +S
Sbjct: 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+EV + L L LKDR++ I +SA +GEG+ + +DWL + +++
Sbjct: 137 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 165 bits (419), Expect = 1e-53
Identities = 54/104 (51%), Positives = 76/104 (73%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ S +EL ML+E+ELRDA+L++ ANKQDM N M
Sbjct: 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP 147
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
V+E+ LGL++L+ RT+ + T A +G GL D +DWLS+ L K
Sbjct: 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 164 bits (418), Expect = 1e-53
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL--RDAILVILANKQDMKNC 58
W YY AII+V+DSSDR R+ ++KEEL +L ++ R ++ ANK D+++
Sbjct: 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141
Query: 59 MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
++ +V + L LEN+KD+ + I + A +GEGL + +DWL + +Q
Sbjct: 142 VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 171 bits (435), Expect = 6e-53
Identities = 42/106 (39%), Positives = 69/106 (65%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI +++EL ++ + E+RDAI++I ANKQD+ + M
Sbjct: 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 440
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
E+ LGL ++DR + + + A G+GL + + WL++ + L
Sbjct: 441 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 161 bits (409), Expect = 3e-52
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
W+ Y+ + I+++VD++D +R ++ EL A+ EL+D VIL NK D N +S
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 61 VAEVHRALGLENLK-------DRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
AE+ ALGL N R ++F S G ++ WLS +
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 155 bits (394), Expect = 7e-50
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
W+ Y + I+++VD +D +R+ SKEEL +++ +E + + ++IL NK D +S
Sbjct: 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS 143
Query: 61 VAEVHRALG------------LENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+ G L+ L R ++F S + +G + W++ +
Sbjct: 144 EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 121 bits (304), Expect = 4e-36
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKE--ELLAMLKEE--ELRDAILVILANKQDMK 56
P + D IYV ++ R E ++AM +LV+ Q
Sbjct: 117 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176
Query: 57 NCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
M + L L L + + + T A+ G + ++W+ ++
Sbjct: 177 KRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 223
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 117 bits (295), Expect = 6e-35
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-----EELRDAILVILANKQDM 55
+ D I++V DS+ +R+ + E + M + L D +VI NK+D+
Sbjct: 89 ASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147
Query: 56 KNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
+ + V V + + F + + A EG+G+ +++ +S + +
Sbjct: 148 PDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 114 bits (286), Expect = 3e-33
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGIS-KEELLAMLKEEEL--RDAILVILANKQDMKNC 58
+ S+ A+++VVDS+ R E L +L + L+I NKQD+
Sbjct: 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130
Query: 59 MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
S + + L E R + S + L
Sbjct: 131 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAP--AQLGK 170
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 113 bits (284), Expect = 3e-32
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKE--ELLAMLKEE--ELRDAILVILANKQDMK 56
P + D IYV ++ R E ++AM +LV+ Q
Sbjct: 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261
Query: 57 NCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
M + L L L + + + T A+ G + ++W+ ++
Sbjct: 262 KRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 92.9 bits (231), Expect = 4e-25
Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 1 PYWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAI---LVILANK 52
Y +I++VDS+ D ++ + E L+ +L E ++I NK
Sbjct: 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129
Query: 53 QDMKNCMSVAEVHRALG--LENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
++ +++ AL ++ + +R + ++ + + + L
Sbjct: 130 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 87.9 bits (218), Expect = 2e-23
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 1 PYWRCYYSN----TDAIIYVVDSS-DRDRIGISKEELLAMLKEEELRDAI---LVILANK 52
Y +I++VDS+ D ++ + E L+ +L E ++I NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165
Query: 53 QDMKNCMSVAEVHRALG--LENLKDR 76
++ +++ AL ++ + +R
Sbjct: 166 SELFTARPPSKIKDALESEIQKVIER 191
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 65.8 bits (160), Expect = 6e-15
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
+ + T A+IYV+D+ D +++ + + D + +K D +
Sbjct: 87 FDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH 146
Query: 61 VAEVHR--------ALGLENLKDRTFQIFKTSAKE 87
E R L L+ + TS +
Sbjct: 147 KIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 53.1 bits (127), Expect = 1e-09
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEEL-RDAILVILANKQDMKNCM 59
+ +I+V D + + + A+ + + DA + +L +K D+
Sbjct: 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD 131
Query: 60 SVAEVHRAL------GLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
E+ + + F TS + E L + + +L ++
Sbjct: 132 KREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 48.7 bits (116), Expect = 3e-08
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 10 TDAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRA 67
+ IIY+ D S+ G EE + + +E E +D +++ NK D+ + ++ + +
Sbjct: 247 GNLIIYIFDPSEHC--GFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKF 304
Query: 68 LGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ K++ K SA +G G++ + + L+
Sbjct: 305 V-----KEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 47.5 bits (113), Expect = 7e-08
Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRAL 68
I++++D S++ G++ +E + + + +VI NK D N S++ ++ L
Sbjct: 110 GVILFIIDISEQC--GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLL 167
Query: 69 --GLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ + + S G G+ + L+
Sbjct: 168 IKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 44.2 bits (105), Expect = 1e-06
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69
D I V DS+ +++++ + KE E ++V+ NK D+ +A
Sbjct: 114 ADCGILVTDSAP----TPYEDDVVNLFKEME-IPFVVVV--NKIDVLG-------EKAEE 159
Query: 70 LENLKDRTFQ--IFKTSAKEGEGLNDSMDWLSNALQKHL 106
L+ L + ++ + SA + +G +D + + + L
Sbjct: 160 LKGLYESRYEAKVLLVSALQKKGFDD----IGKTISEIL 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 43.1 bits (101), Expect = 2e-06
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
+ + A++YV+DS D I+ ++ + + +L +K D +
Sbjct: 66 SERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV 125
Query: 63 EVHRALG---LENLKDRT-----FQIFKTSAKE 87
+ R + E L + + TS +
Sbjct: 126 DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 42.5 bits (101), Expect = 5e-06
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
D +++V+D+S + +E+ + E +++ +++ NK D+ ++ E+ LG
Sbjct: 325 DIVLFVLDASS----PLDEEDRKIL---ERIKNKRYLVVINKVDVVEKINEEEIKNKLGT 377
Query: 71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
+ + K SA +GEGL L ++ +
Sbjct: 378 D------RHMVKISALKGEGLEK----LEESIYRET 403
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
D ++ +D++ G + + E+++ L+++ NK D+ + + +
Sbjct: 305 DLVLLTIDAAT----GWTTGDQEIY---EQVKHRPLILVMNKIDLVEKQLITSLEYPENI 357
Query: 71 ENLKDRTFQIFKTSAKEGEGLND 93
I T+A + +G++
Sbjct: 358 TQ-------IVHTAAAQKQGIDS 373
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 39.5 bits (93), Expect = 4e-05
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
D ++++VD + D + E+ + ++ NK D+ LG+
Sbjct: 85 DRVLFMVDGTTTD--AVDPAEIWPEFIARLPAKLPITVVRNKADITG--------ETLGM 134
Query: 71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
+ + + SA+ GEG+ D L N L++ +
Sbjct: 135 SEVNGHA--LIRLSARTGEGV----DVLRNHLKQSM 164
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 38.3 bits (90), Expect = 1e-04
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKE--EELRDAILVILANKQDMKNCMSVAEVHRAL 68
D I+Y++D ++ L ++E A + +ANK D AL
Sbjct: 314 DLILYLLDLGTER-----LDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------AL 362
Query: 69 GLENLKDRTFQIFKTSAKEGEGLND 93
++ SA G+G++
Sbjct: 363 IRAIADGTGTEVIGISALNGDGIDT 387
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 36.5 bits (84), Expect = 6e-04
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 5 CYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEV 64
+ + + + ++DS L +++ + ++++ NK D +
Sbjct: 117 FFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYG-GKSPVIVVMNKIDENP---SYNI 168
Query: 65 HRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ E + + S K G+G+ L +A+
Sbjct: 169 EQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 35.9 bits (83), Expect = 7e-04
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAE 63
YY N A + V D + + L E+ +D I+ ++ NK D +
Sbjct: 70 PXYYRNAQAALVVYDVTKPQSFI-KARHWVKELHEQASKDIIIALVGNKIDXLQEGGERK 128
Query: 64 VHRALGLENLKDRTFQIFKTSAKEGEGLND 93
V R G + +++ F+TSAK GE +ND
Sbjct: 129 VAREEGEKLAEEKGLLFFETSAKTGENVND 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 35.8 bits (83), Expect = 9e-04
Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 4 RCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELR--DAILVILANKQDMKNCMSV 61
+ + + V D S + + L + R + ++++ D+ +
Sbjct: 74 PHFMTQRALYLAVYDLSKGQA---EVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR 130
Query: 62 AEVHRALGLENLKDRTFQ-----IFKTSAKEGEGLND 93
+ E L R F F + +E + L
Sbjct: 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAK 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.001
Identities = 12/108 (11%), Positives = 38/108 (35%), Gaps = 19/108 (17%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVH 65
++ + D +D + + ++ + ++++D K+ +S E+
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM----------PKSILSKEEID 52
Query: 66 RALGLENLKDRT---FQIFKTSAKE------GEGLNDSMDWLSNALQK 104
+ ++ T F + +E E L + +L + ++
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Score = 32.1 bits (72), Expect = 0.024
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 18 DSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK-------NCMSV-----AEVH 65
S+ + RI + EL +LK + + L++L N Q+ K +C + +V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 66 RALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
L + + E + + +L Q
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 35.2 bits (82), Expect = 0.002
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 10 TDAIIYVVDSSDRDRIGISKEELLAMLKE-----EELRDAILVILANKQDMKNCMSVAEV 64
T ++YV+D++ + + + L + KE L ++ NK D+ + E
Sbjct: 236 TRVLLYVLDAA-DEPL----KTLETLRKEVGAYDPALLRRPSLVALNKVDL-----LEEE 285
Query: 65 HRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ L + SA G GL + L ++
Sbjct: 286 AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 34.7 bits (81), Expect = 0.002
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG- 69
+ +I+VV+ + R E +L L+E + IL + NK D V E L
Sbjct: 90 ELVIFVVEGT---RWTPDDEMVLNKLREGKAP-VILAV--NKVDN-----VQEKADLLPH 138
Query: 70 LENLKDR-TF-QIFKTSAKEGEGLNDSMDWLSNAL 102
L+ L + F I SA+ G ++ + L
Sbjct: 139 LQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.2 bits (79), Expect = 0.003
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 11 DAIIYVVDSSDRDRIGISK-EELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69
DA+I V+DS+ + + I + +L+E + +++ NK D N ++
Sbjct: 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEK 318
Query: 70 L-ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
L + L F + SA + L D + +
Sbjct: 319 LSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 34.2 bits (79), Expect = 0.003
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 9 NTDAIIYVVDS-------SDRDRIGISK--EELLAMLKEEELRDAILVILANKQD-MKNC 58
N D + VVD ++ G E L+E ++ ++ NK D +KN
Sbjct: 82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP---TIVAVNKLDKIKNV 138
Query: 59 MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
V L + SAK G+ + + + +++
Sbjct: 139 QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 33.2 bits (77), Expect = 0.007
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
D I++++D+++ EE+ + + I+VI NK D
Sbjct: 94 DVILFMIDATEG--WRPRDEEIYQNFIKPLNKPVIVVI--NKIDKIGPAKNVLPLIDEIH 149
Query: 71 ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+ + T +I SA +G L++ + + L
Sbjct: 150 KKHPELT-EIVPISALKGANLDELVKTILKYL 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 33.2 bits (76), Expect = 0.009
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNC----MSVAEVH 65
D I + + D + K+ L+ E+ D I++ NK D N ++
Sbjct: 170 VDCFISLQIAGGGDDLQGIKKGLM------EVADLIVI---NKDDGDNHTNVAIARHMYE 220
Query: 66 RALGLENLKDRTFQ--IFKTSAKEGEGLNDSMDWLSNALQKH 105
AL + K +Q + SA E G+++ + +A+
Sbjct: 221 SALHILRRKYDEWQPRVLTCSALEKRGIDE----IWHAIIDF 258
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 32.2 bits (74), Expect = 0.013
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
+Y D + V D ++ + I ++E L VIL NK D + +
Sbjct: 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV 137
Query: 63 EVHRALGL-ENLKDRTFQIFKTSAKEGEGLNDSMDWL-SNALQKH 105
A L ++L D F TSAK ++ + + + +ALQ++
Sbjct: 138 SEKSAQELAKSLGDIPL--FLTSAKNAINVDTAFEEIARSALQQN 180
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 31.9 bits (73), Expect = 0.021
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEELLAMLKE-EELRDAILVILA-NKQDMKNCMSVAE 63
YY I + D + R + + + ++ + + I ++L NK D+K+ A+
Sbjct: 84 YYIQAQCAIIMFDVTSRV----TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK 139
Query: 64 ---VHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
HR L Q + SAK WL+ L
Sbjct: 140 SIVFHRKKNL--------QYYDISAKSNYNFEKPFLWLARKL 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 32.1 bits (73), Expect = 0.021
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 40 ELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQ--IFKTSAKEGEGLND 93
EL D ++V NK D ++ ++ E+ A+ L ++ ++ + SA EG GL +
Sbjct: 217 ELADIVVV---NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273
Query: 94 SMDWLSNALQKH 105
L + +++H
Sbjct: 274 ----LWDTVERH 281
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 31.8 bits (73), Expect = 0.021
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 79 QIFKTSAKEGEGLNDSMDWLSNALQKH 105
+I + K G+G + +D+L L H
Sbjct: 189 KIIEMDLKTGKGFEEWIDFLRGILNVH 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.0 bits (73), Expect = 0.022
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA-----EV 64
TD + ++ D + K+ + EL D I V NK D + A E
Sbjct: 169 TDFFLVLMLPGAGDELQGIKKGIF------ELADMIAV---NKADDGDGERRASAAASEY 219
Query: 65 HRALGLENLKDRTFQ--IFKTSAKEGEGLNDSMDWLSNALQKH 105
AL + T+ + S G+GL+ L + ++ H
Sbjct: 220 RAALHILTPPSATWTPPVVTISGLHGKGLDS----LWSRIEDH 258
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 31.5 bits (72), Expect = 0.030
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 79 QIFKTSAKEGEGLNDSMDWLSNALQK 104
++ S K EG + ++++ ++++
Sbjct: 199 EVVLLSLKTMEGFDKVLEFIEKSVKE 224
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 31.5 bits (72), Expect = 0.033
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 6 YYSNTDAIIYVVDSSDR---DRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
+Y D + V D + + ++E L + + V+L NK D++N
Sbjct: 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVAT 136
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLND 93
+ +A F+TSAKE +
Sbjct: 137 KRAQAWCYSKNN---IPYFETSAKEAINVEQ 164
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 31.1 bits (71), Expect = 0.041
Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
Y+ D ++ + D + S + + M+++ ++++ NK D+++ +
Sbjct: 97 YFRKADGVLLLYDVTCEK----SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATE 152
Query: 63 ---EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
V G + +TSAK+G + +++ L+ ++K
Sbjct: 153 GQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 30.9 bits (71), Expect = 0.042
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRD-AILVILANKQDMKNCMSVAEVHRALG 69
+A+++VVD E + LK + +LV NK D +
Sbjct: 88 NAVVWVVDLRHP--PTPEDELVARALKPLVGKVPILLVG--NKLDAAK-------YPEEA 136
Query: 70 LENLKDR-TF-QIFKTSAKEGEGLNDSMDWLSNAL 102
++ + + SA + + + L +
Sbjct: 137 MKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 30.9 bits (71), Expect = 0.049
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 20/90 (22%)
Query: 11 DAIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILA-NKQD-MKNCMSVAEVHR 66
D II++V+ R G++ EE+ +L R V+LA NK D + ++ + +
Sbjct: 84 DVIIFMVNG----REGVTAADEEVAKILY----RTKKPVVLAVNKLDNTEMRANIYDFY- 134
Query: 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMD 96
+LG + S G GL D +D
Sbjct: 135 SLGFGE-------PYPISGTHGLGLGDLLD 157
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.0 bits (70), Expect = 0.052
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 40 ELRDAILVILANKQDMKNC----MSVAEVHRALGLENLKDRTFQ--IFKTSAKEGEGLND 93
E+ D + V K D AE AL L + + ++ + + SA+ GEG+++
Sbjct: 212 EMADLVAV---TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268
Query: 94 SMDWLSNALQKH 105
+ + ++
Sbjct: 269 ----MWDKMKDF 276
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 30.2 bits (69), Expect = 0.090
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 10 TDAIIYVVDSS---DRDRIGISKEELLAMLKE-----EELRDAILVILANKQDMKNCMSV 61
T I++V+D S RD ++ L + +E L + +I+ANK DM
Sbjct: 237 TRVIVHVIDMSGLEGRDPY----DDYLTINQELSEYNLRLTERPQIIVANKMDM-----P 287
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ + +F SA EGL + + ++N L+
Sbjct: 288 EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 331
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 30.0 bits (68), Expect = 0.093
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
Y ++ + V D ++ + S ++ + ++ E D I++++ NK D+ +
Sbjct: 85 YIRDSTVAVVVYDITNVN----SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD---KR 137
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLND 93
+V G K+ +TSAK G +
Sbjct: 138 QVSIEEGERKAKELNVMFIETSAKAGYNVKQ 168
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 29.2 bits (66), Expect = 0.19
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
YY I D + R + + L + + +A +V+ ANK D+KN ++
Sbjct: 81 YYIGASGAILFFDVTSRI----TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS 136
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+ L +E LK + ++ F+ SAK L+
Sbjct: 137 ---KKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.0 bits (66), Expect = 0.20
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 47 VILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
V++ NK D+ ++ + LE + + I KTSAK G G+ + ++L
Sbjct: 119 VMVINKMDL---YDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 2.70A {Homo sapiens}
Length = 218
Score = 28.8 bits (64), Expect = 0.31
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 27 ISKEELLAMLKEEELRDAILVILA 50
+ E A + ++ + VI
Sbjct: 180 LPLEGAQAFADDPDIPKTLGVIFG 203
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 28.2 bits (64), Expect = 0.37
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
YY +++ I V D +D D S +++ + L++ + L I+ NK D++
Sbjct: 75 YYRDSNGAILVYDITDED----SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK---ER 127
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLND 93
V + + + TSAK+ +G+ +
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEE 158
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 27.9 bits (63), Expect = 0.43
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
Y ++ + V D ++ + S + + ++ E D I++++ NK D+ +
Sbjct: 83 YIRDSTVAVVVYDITNTN----SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD---KR 135
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLND 93
+V G K+ +TSAK G +
Sbjct: 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.9 bits (63), Expect = 0.56
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 43 DAILVI----LANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
+ ++V L N+++ K ++R G + + K SAK GEG+++ +D+L
Sbjct: 112 EPVIVFNKIDLLNEEEKKELERWISIYRDAG--------YDVLKVSAKTGEGIDELVDYL 163
Query: 99 SN 100
Sbjct: 164 EG 165
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 27.5 bits (62), Expect = 0.63
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 12 AIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQD----MKNCMSVAEVH 65
+ +VD RI ++ +K + I+ K D + + E
Sbjct: 107 MVFLLVDG----RIPPQDSDLMMVEWMKSLNIP---FTIVLTKMDKVKMSERAKKLEEHR 159
Query: 66 RALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ K + I TS+ GEG+++ +D +S L+++
Sbjct: 160 KVFS----KYGEYTIIPTSSVTGEGISELLDLISTLLKEN 195
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 27.6 bits (62), Expect = 0.69
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 47 VILANKQD------MKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
+I+ NK D M +++R +G +++ S+ +GL + L+
Sbjct: 164 LIVLNKIDLLDDEGMDFVNEQMDIYRNIG--------YRVLMVSSHTQDGLKPLEEALTG 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.5 bits (62), Expect = 0.80
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 47 VILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
+I K D+ + +A E+ ++ + ++ TS+K+ + L D + +
Sbjct: 121 IICITKMDLIEDQDTEDTIQAY-AEDYRNIGYDVYLTSSKDQDSLADIIPHFQD 173
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 27.5 bits (62), Expect = 0.89
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 18/90 (20%)
Query: 11 DAIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHR-- 66
D +++VVD + GI+K E L L++ D ILV ANK +
Sbjct: 83 DLVLFVVDG----KRGITKEDESLADFLRKST-VDTILV--ANKAENLREFEREVKPELY 135
Query: 67 ALGLENLKDRTFQIFKTSAKEGEGLNDSMD 96
+LG + SA+ L+ ++
Sbjct: 136 SLGFG-------EPIPVSAEHNINLDTMLE 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.96
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 27/71 (38%)
Query: 39 EELRDAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKE--------GEG 90
EELRD + + + L + +L + + + +G
Sbjct: 171 EELRD-----------------LYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 91 LNDSMDWLSNA 101
L + ++WL N
Sbjct: 213 L-NILEWLENP 222
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.9 bits (60), Expect = 1.1
Identities = 13/100 (13%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 12 AIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQD----MKNCMSVAEVH 65
+I ++D+ R +++ ++ + L K D ++ ++
Sbjct: 118 GMILMMDA----RRPLTELDRRMIEWFAPTGKP---IHSLLTKCDKLTRQESINALRATQ 170
Query: 66 RALGL--ENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
++L + + SA + GL+D+ + + L+
Sbjct: 171 KSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 26.3 bits (59), Expect = 1.5
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 6 YYSNTDAIIYVVDSSDRDRIGISKEEL---LAMLKEEELRDAILVILANKQDMKNCMSVA 62
YY A I V D ++ + S + L+ + + ++ + NK D+ N +V
Sbjct: 75 YYRGAQAAIVVYDITNEE----SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV- 129
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ A + F +TSAK +N+ ++ L K+
Sbjct: 130 DFQEAQSYADDNSLLF--METSAKTSMNVNEIFMAIAKKLPKN 170
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 26.0 bits (58), Expect = 2.1
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 12 AIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQD----MKNCMSVAEVH 65
A++ +VD R S ++ LK + ++++A K D K V
Sbjct: 108 AVVQIVDL----RHAPSNDDVQMYEFLKYYGIP---VIVIATKADKIPKGKWDKHAKVVR 160
Query: 66 RALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ L ++ ++ S++ +G +++ + + +
Sbjct: 161 QTLNIDPED----ELILFSSETKKGKDEAWGAIKKMINR 195
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 26.1 bits (58), Expect = 2.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 32 LLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLE 71
LL + KE E + + I+ N+ D + ++ E+ + +G
Sbjct: 161 LLKLCKEFEKPISRIEIILNRADTNSRITSDEIEKVIGRP 200
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 25.6 bits (57), Expect = 2.5
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 36 LKEEELRDAILVILANKQDMKNCMSVAEVHR 66
+ +L +A+ ++ + +N M ++ +
Sbjct: 139 MSSTDLLNALKRVINDPSYKENVMKLSRIQH 169
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A
{Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Length = 191
Score = 25.3 bits (56), Expect = 3.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 27 ISKEELLAMLKEEELRDAILVIL 49
+ + L M+K E+RD V+L
Sbjct: 158 LPFSQALEMIKTGEIRDGKTVLL 180
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 25.5 bits (56), Expect = 3.6
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 36 LKEEELRDAILVILANKQDMKNCMSVAEVHRALG 69
+ LR+ L ++ + + + + G
Sbjct: 352 ATADLLRETALALVDDPEVARRLRRIQAEMAQEG 385
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 25.4 bits (56), Expect = 4.3
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 27 ISKEELLAMLKEEELRDAILVIL 49
+S+E+ ++E ++ +A VI
Sbjct: 171 VSREQAYQWVEEGKIDNAASVIA 193
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 24.9 bits (55), Expect = 6.1
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 7 YSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVI 48
D I +D + RI + + ++I
Sbjct: 89 IMEADVIC-CLDFNALKRIDEMSDIV------AASPGRKIMI 123
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 24.7 bits (53), Expect = 7.3
Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI----------LVILA 50
W + + +I+++V SS+ D++ + + + + + + I +++
Sbjct: 216 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 275
Query: 51 NKQDM 55
NK D+
Sbjct: 276 NKTDL 280
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 24.9 bits (54), Expect = 7.6
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 30 EELLA---MLKEEELRDAILVILANKQDMKNCMSV---AEVHRALGLENLKDRTFQIFKT 83
++LLA E L+ L + ++N + A++H A + LK +
Sbjct: 246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA---DQLKTQAVDFINY 302
Query: 84 SAKE 87
A +
Sbjct: 303 HATD 306
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel,
channel, transcription; 2.40A {Saccharomyces cerevisiae}
PDB: 2hzs_B 3rj1_E
Length = 317
Score = 24.8 bits (53), Expect = 7.8
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDM 55
A I V +D DRI ++ L+ + ++EL+ I + + ++Q M
Sbjct: 253 KAYINVSRGTDIDRINYTETVLMNL--KKELQGYIELSVPDRQSM 295
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 24.7 bits (53), Expect = 7.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAI----------LVILANK 52
W + AII+ V SD D + EE+ M + +L D+I +++ NK
Sbjct: 210 WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNK 269
Query: 53 QDM 55
+D+
Sbjct: 270 KDL 272
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 24.5 bits (54), Expect = 7.9
Identities = 11/100 (11%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 12 AIIYVVDSSDRDRIGISK--EELLAMLKEEELRDAILVILANKQD----MKNCMSVAEVH 65
++ ++D R + ++++ + + +++L K D + V
Sbjct: 111 GLVVLMDI----RHPLKDLDQQMIEWAVDSNIA---VLVLLTKADKLASGARKAQLNMVR 163
Query: 66 RALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
A+ + Q+ S+ + +G++ L +
Sbjct: 164 EAVLAF---NGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 24.4 bits (54), Expect = 9.0
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 26 GISKEELLAMLKEEELRDAILVILANKQD 54
S EEL ++ D I+V K
Sbjct: 30 YPSGEELKGVIGR---FDGIIVSPTTKIT 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,606,345
Number of extensions: 87805
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 130
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)