RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12794
(106 letters)
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 73.5 bits (179), Expect = 2e-18
Identities = 41/102 (40%), Positives = 67/102 (65%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
P WR YY+ T +I+VVD +DRDRI +++EL ++ + E+RDAI++I ANKQD+ + M
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
E+ LGL ++DR + + + A G+GL + + WL++
Sbjct: 131 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 68.1 bits (165), Expect = 3e-16
Identities = 51/105 (48%), Positives = 78/105 (74%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
PYWRCYY++T A+I+VVDS+D+DR+ + +EL ML+EEEL+DA L++ ANKQD +S
Sbjct: 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 135
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+EV + L L LKDR++ I +SA +GEG+ + +DWL + +++
Sbjct: 136 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 67.7 bits (164), Expect = 3e-16
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
YWR Y+ NTD +IYV+DS+DR R + +EL +L+EE+L ++I ANKQD+
Sbjct: 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+E+ L L ++DR +QI SA GEG+ D M+W+ +
Sbjct: 136 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 64.3 bits (155), Expect = 9e-15
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
W YY+NT+ +I VVDS+DR+RI +++EEL ML E+LR A L+I ANKQD+K CM+
Sbjct: 74 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 133
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
VAE+ + L L ++KD + I A GEGL ++W+ + L+
Sbjct: 134 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 61.2 bits (147), Expect = 7e-14
Identities = 52/102 (50%), Positives = 74/102 (72%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
P WR Y+ NT +I+VVDS+DR+R+ ++EEL+ ML E+ELRDA+L++ ANKQD+ N M+
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
AE+ LGL +L+ R + I T A G+GL + +DWLSN L
Sbjct: 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 60.8 bits (146), Expect = 1e-13
Identities = 41/104 (39%), Positives = 63/104 (60%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YWR Y+ +TD +I+VVDS+DR R+ + EL ++L EE L A L+I ANKQD+ +S
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ AL L++++ ++I SA GE L +DWL + +
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 60.9 bits (146), Expect = 1e-13
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
W+ Y+ + I+++VD++D +R ++ EL A+ EL+D VIL NK D N +S
Sbjct: 60 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE 119
Query: 62 AEVHRALGLENL-------KDRTFQIFKTSAKEGEGLNDSMDWLS 99
AE+ ALGL N R ++F S G ++ WLS
Sbjct: 120 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 60.1 bits (144), Expect = 3e-13
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
W+ Y + I+++VD +D +R+ SKEEL +++ +E + + ++IL NK D +S
Sbjct: 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE 132
Query: 62 AEVHRALGLEN------------LKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+ GL L R ++F S + +G + W++ +
Sbjct: 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 52.0 bits (123), Expect = 3e-10
Identities = 28/99 (28%), Positives = 55/99 (55%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
W Y AI+Y+VD++D+++I SK EL +L + +L+ +++L NK+D+ +
Sbjct: 63 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 122
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSN 100
E+ + L ++DR + S KE + ++ ++ WL
Sbjct: 123 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 51.6 bits (122), Expect = 4e-10
Identities = 70/104 (67%), Positives = 86/104 (82%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
PYWRCYYSNTDA+IYVVDS DRDRIGISK EL+AML+EEELR AILV+ ANKQDM+ M+
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+E+ +LGL LKDR +QIFKTSA +G GL+++M+WL L+
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 48.3 bits (114), Expect = 8e-09
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YY +I V D + RD L + D + +++ K
Sbjct: 71 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV----GNKIDKE 126
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
EV R GL+ + + + SAK +G+ + + L + +
Sbjct: 127 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 47.8 bits (113), Expect = 1e-08
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YY II V D +D + ++ + E +A L+++ NK DM+ +
Sbjct: 66 TITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV 124
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
A+ G K+ ++SAK + +N+ L+ +Q+ +
Sbjct: 125 TADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 47.1 bits (111), Expect = 2e-08
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YY I+ V D ++ + + ++E D +IL N +
Sbjct: 70 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGN---KCDVND 125
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
+V + G + D + +TSAK + ++ L+ ++ +
Sbjct: 126 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 45.6 bits (107), Expect = 8e-08
Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YY + A++ + D +++ + L + + + A++++ +
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV- 129
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
V R G + K+ +TSAK G ++ + ++ L++
Sbjct: 130 ---VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 44.9 bits (105), Expect = 1e-07
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
Y N I V ++ K +++ + ++++ NK D+++
Sbjct: 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER-- 124
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
EV + G ++ +TSAK +++ + +
Sbjct: 125 -EVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 45.3 bits (106), Expect = 1e-07
Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
++ + + + D + + + + + + +V++ NK D+ + V
Sbjct: 81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 140
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
E E F+TSA G+ + +++ L + + K +
Sbjct: 141 ERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 43.8 bits (102), Expect = 3e-07
Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
Y + + V ++ + + + ++ D +V++ NK D+
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ + + + +TSAK +G+ D+ L +++H
Sbjct: 127 SRQAQ----DLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 43.7 bits (102), Expect = 4e-07
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
R YY + V D + R+ L ++ + +++++ NK D+++
Sbjct: 67 SITRSYYRGAAGALLVYDITRRETFN-HLTSWLEDARQHSSSNMVIMLIGNKSDLESRR- 124
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+V R G ++ +TSAK + ++ + + +
Sbjct: 125 --DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 43.3 bits (101), Expect = 5e-07
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
YY I + D ++ + ++ + +L++ + +
Sbjct: 71 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS 130
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
E R + F+ F+ SAK+ + + + L + + +
Sbjct: 131 ERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 43.3 bits (101), Expect = 6e-07
Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
YY + V D + + E L L++ + +++++ NK D+++
Sbjct: 70 TSAYYRGAVGALLVYDIAKHLTY-ENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--- 125
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
V + +TSA + + ++ + + +
Sbjct: 126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 167
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 42.9 bits (100), Expect = 6e-07
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
R YY + V D + R L + + +++++ NK D++
Sbjct: 70 TRSYYRGAAGALMVYDITRRSTYNHLSSWLT-DARNLTNPNTVIILIGNKADLEAQR--- 125
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+V + ++ + SAK GE + D+ + +
Sbjct: 126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 43.1 bits (100), Expect = 9e-07
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDR-IGISKEELLAMLKEEELRDA--ILVILANKQDMKNC 58
+ S+ A+++VVDS+ R + E L +L + L+I NKQD+
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123
Query: 59 MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDS 94
S + + L E R + S + +
Sbjct: 124 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 42.3 bits (98), Expect = 1e-06
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YY N A + V D + ++ + L E+ +D I+ ++ NK DM
Sbjct: 67 SLAPMYYRNAQAALVVYDVTKPQSFIKARHWV-KELHEQASKDIIIALVGNKIDMLQEGG 125
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+V R G + +++ F+TSAK GE +ND + +
Sbjct: 126 ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 42.2 bits (98), Expect = 1e-06
Identities = 13/102 (12%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
Y+ + + + V ++ + + + +L+ +E + +++ NK D+++ V+
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ +TSAK ++ L ++
Sbjct: 129 VEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREIRA 167
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 42.2 bits (98), Expect = 2e-06
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
R YY + V D + R+ L I++ K +
Sbjct: 69 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV 128
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
++ +TSA GE + ++ + +
Sbjct: 129 TFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKI 166
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 40.4 bits (93), Expect = 6e-06
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
Y + V +DR + +L+ ++ D +V++ NK D+++ V
Sbjct: 70 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV 129
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ F+ SAK ++++ + L A++K+
Sbjct: 130 PRSEAS---AFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 40.4 bits (93), Expect = 6e-06
Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
Y N V + + ++ +L+ ++ D ++++ NK D+++ V
Sbjct: 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV 126
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ + F ++SAK +N+ L + +
Sbjct: 127 GKEQGQNLARQWCNCAF--LESSAKSKINVNEIFYDLVRQINR 167
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 38.8 bits (89), Expect = 2e-05
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 3 WRCYYSNTDAII---YVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM 59
+Y +D + V DS + K+E + +E VIL NK D+
Sbjct: 72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ 131
Query: 60 SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
E +A +N + F+TSAK+ + + + +
Sbjct: 132 VSTEEAQAWCRDNGD---YPYFETSAKDATNVAAAFEEAVRRV 171
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 38.8 bits (89), Expect = 3e-05
Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 24/128 (18%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
+ ++ +V+S + +R+ SK ++ +++ +++ NK+D+ +
Sbjct: 72 IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY 131
Query: 63 E-----------------------VHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLS 99
+ + L D+ T A + E + +
Sbjct: 132 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191
Query: 100 NA-LQKHL 106
+ LQ +L
Sbjct: 192 DTILQLNL 199
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 38.4 bits (88), Expect = 3e-05
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
Y ++ A + V D ++ + + + + ++ E D I++++ NK D+ +
Sbjct: 64 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWID-DVRTERGSDVIIMLVGNKTDLADKR- 121
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+V G K+ +TSAK G + ++ AL
Sbjct: 122 --QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 38.4 bits (88), Expect = 4e-05
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
YY +++ I V D +D D K + + K + ++ K
Sbjct: 68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 127
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ + + + + TSAK+ +G+ + L + +
Sbjct: 128 IQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 38.1 bits (87), Expect = 5e-05
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
YY A I V D ++ + + + L+ + + ++ + NK D+ N +
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESF-ARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
V D + +TSAK +N+ ++ L K+
Sbjct: 129 VDFQEAQ---SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 34.3 bits (77), Expect = 0.001
Identities = 14/104 (13%), Positives = 28/104 (26%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
+Y D + V D + + L + RD + + +
Sbjct: 67 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 126
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ F+TSAKE + + ++ K
Sbjct: 127 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 34.2 bits (77), Expect = 0.001
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
+ YY N A+++V D ++ + + D +++ NK D+++ +
Sbjct: 68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI-- 125
Query: 62 AEVHRALGLENLKDRTFQIFKTSAK---EGEGLNDSMDWL 98
+V L + + +F+TSAK + + + L
Sbjct: 126 -QVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 34.2 bits (77), Expect = 0.001
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
Y + + V +DR + +L+ ++ + ++++ NK D+ + V
Sbjct: 69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQV 128
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ LK + SAK ++ + L ++K
Sbjct: 129 TQEEGQQLARQLK---VTYMEASAKIRMNVDQAFHELVRVIRKF 169
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 33.9 bits (76), Expect = 0.001
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
+ YY A + V ++DR+ ++ E D ++ NK D+ + +
Sbjct: 67 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLDDSCI 124
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
K + ++TS KE +++ +L +KHL
Sbjct: 125 KNEEAE---GLAKRLKLRFYRTSVKEDLNVSEVFKYL---AEKHL 163
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.6 bits (76), Expect = 0.002
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
+ YY + +A+I D + + E L + + + +++ +
Sbjct: 71 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE--- 127
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
V + E + + +TSAKE + + L+ L
Sbjct: 128 -VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 33.1 bits (74), Expect = 0.003
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
Y D + V +D+ +L+ ++ ++++ANK D+ + V
Sbjct: 68 MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV 127
Query: 62 AEVHRALGLENLKDRTFQIFKTSAKEGE-GLNDSMDWLSNALQK 104
E +TSAK+ ++ + L +++
Sbjct: 128 TRDQGK---EMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.3 bits (72), Expect = 0.005
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 43 DAILVILANKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+ +V+ NK D+K+ A+ + + Q + SAK WL+ L
Sbjct: 107 NIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 31.9 bits (71), Expect = 0.007
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 3 WRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVA 62
YY + A I V D + + K + + + + + +
Sbjct: 70 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME 129
Query: 63 EVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNAL 102
+ +TSAK +N+ +S +
Sbjct: 130 RDAKDYA----DSIHAIFVETSAKNAININELFIEISRRI 165
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 31.3 bits (69), Expect = 0.014
Identities = 5/54 (9%), Positives = 19/54 (35%)
Query: 51 NKQDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
K D + + + D ++ S++ +G +++ + + +
Sbjct: 142 TKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.9 bits (68), Expect = 0.020
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
DA + V +DR + E + + + + D ++++ NK D+ C
Sbjct: 69 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE 128
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
V+ + +TSA + + + + ++
Sbjct: 129 VSVSEGRACAVVFD---CKFIETSAAVQHNVKELFEGIVRQVRLR 170
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.5 bits (67), Expect = 0.021
Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 8/105 (7%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
+ + +I+VV+ + L K + V ++
Sbjct: 77 KAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHL 136
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ L+ I SA+ G ++ + L +
Sbjct: 137 QFLASQMNFLD--------IVPISAETGLNVDTIAAIVRKHLPEA 173
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.4 bits (67), Expect = 0.024
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAIL------VILANKQD- 54
+ N D + VVD I E+ + + E + ++ NK D
Sbjct: 74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK 133
Query: 55 MKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQ 103
+KN V L + SAK G+ + + + ++
Sbjct: 134 IKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.4 bits (67), Expect = 0.028
Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 10/111 (9%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
R + + S + + ++++ K D+++
Sbjct: 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT 127
Query: 62 AEVHRALGLENLKDRTFQI----------FKTSAKEGEGLNDSMDWLSNAL 102
E + L + + SA GL D A+
Sbjct: 128 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.3 bits (67), Expect = 0.030
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
R S A I V + R + K + + + ++I ++L + ++
Sbjct: 65 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 124
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ A L + +TSAK + + L N ++
Sbjct: 125 EVQSSEAEALA--RTWKCAFMETSAKLNHNVKELFQELLNLEKR 166
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.0 bits (66), Expect = 0.043
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 3/107 (2%)
Query: 2 YWRCYYSNTDAIIYV--VDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCM 59
T ++ +D R+ + + K++ L + K
Sbjct: 115 LNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHE 174
Query: 60 SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKHL 106
E R + + I SA GEG+ + + L Q++L
Sbjct: 175 EGFESERFDRVTDFA-SQVSIIPISAITGEGIPELLTMLMGLAQQYL 220
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 29.3 bits (64), Expect = 0.073
Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKE-ELLAMLKEEELRDAILVILANKQDMKNCM 59
D ++ V+D++ + L+ + L ++ +
Sbjct: 83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE 142
Query: 60 SVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
L + + TSA +G ++ +D ++ A +
Sbjct: 143 FTKLFREKLYFIDYSP----LIFTSADKGWNIDRMIDAMNLAYASY 184
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.8 bits (63), Expect = 0.087
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRAL 68
T ++YV+D++D + + L ++ NK D+ +V + AL
Sbjct: 79 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL 138
Query: 69 GLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQKH 105
E L + SA G GL + L ++
Sbjct: 139 AREGL-----AVLPVSALTGAGLPALKEALHALVRST 170
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.5 bits (62), Expect = 0.12
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
+ + Y + + I V + + K +L ++++ NK+D+
Sbjct: 67 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER- 125
Query: 61 VAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ G + ++SAKE + D + +K
Sbjct: 126 --VISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.5 bits (62), Expect = 0.12
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 47 VILANKQDMKNC-MSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLS-NALQK 104
VIL NK D + V+E ++L D F TSAK ++ + + ++ +ALQ+
Sbjct: 116 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPL--FLTSAKNAINVDTAFEEIARSALQQ 173
Query: 105 H 105
+
Sbjct: 174 N 174
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 28.3 bits (62), Expect = 0.14
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 11 DAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGL 70
D + +VD+ RI +S + E+ L++ ++L NK D + +
Sbjct: 17 DIVYELVDA----RIPMSSRNPMI---EDILKNKPRIMLLNKADKADAAVTQQWKEHFEN 69
Query: 71 ENLKDRTFQIFKTSAKEGEGLNDSMDW 97
+ + ++ G+GLN +
Sbjct: 70 QG-----IRSLSINSVNGQGLNQIVPA 91
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.0 bits (61), Expect = 0.18
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 25 IGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENLKD--RTFQIFK 82
++K +LL+ ++E R I +K S+ + + + ++
Sbjct: 162 PALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY 221
Query: 83 TSAKEGEGLNDSMDWL 98
SAK EG D
Sbjct: 222 LSAKTREGFEDLETLA 237
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.0 bits (58), Expect = 0.36
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 78 FQIFKTSAKEGEGLNDSMDWLSNAL 102
+ + SA+ GEG++ + L ++
Sbjct: 137 HALIRLSARTGEGVDVLRNHLKQSM 161
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.9 bits (58), Expect = 0.46
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRAL 68
D +++V+D+S K E +++ +++ NK D+ ++ E+ L
Sbjct: 80 KADIVLFVLDASSPLDEEDRK-------ILERIKNKRYLVVINKVDVVEKINEEEIKNKL 132
Query: 69 GLENLKDRTFQIFKTSAKEGEGLNDSMDWL 98
G + + K SA +GEGL + +
Sbjct: 133 GTDR------HMVKISALKGEGLEKLEESI 156
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 26.6 bits (57), Expect = 0.50
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 55 MKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
+ + EV G + +TSA + + + ++
Sbjct: 114 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.8 bits (58), Expect = 0.51
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 50 ANKQDMKNCMSVAEVHRALGLENLKDR---TFQIFKTSAKEGEGLNDSMDWLSNALQ 103
+ + + A LE K++ + +F SA EGL + + ++N L+
Sbjct: 116 TERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 172
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 26.3 bits (56), Expect = 0.70
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 53 QDMKNCMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMDWLSNALQK 104
++ E R + E + SA+ L+ ++ + L++
Sbjct: 114 LVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 165
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.9 bits (55), Expect = 0.94
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 79 QIFKTSAKEGEGLNDSMDWLSNALQKH 105
+ SA + + + L + +
Sbjct: 146 EPRMLSALDERQVAELKADLLALMPEG 172
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.7 bits (55), Expect = 1.1
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILAN--KQDMKNC 58
+ + + V D +DR + + ++ ++ L+++ N D
Sbjct: 64 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ 123
Query: 59 MSVAEVHRALGLENLKDRTFQIFKTSAKEGEG-LNDSMDWLSNALQKH 105
+S E + + ++ SA GEG + + L +++
Sbjct: 124 VSTEEGE-----KLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 25.4 bits (55), Expect = 1.2
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 27 ISKEELLAMLKEEELRDAILVIL 49
+S+E+ ++E ++ +A VI
Sbjct: 171 VSREQAYQWVEEGKIDNAASVIA 193
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 79
Score = 24.4 bits (53), Expect = 1.4
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 14 IYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSVAEVHRALGLENL 73
+ V +++D ++ E L L + D ++ ++ E+H + L++L
Sbjct: 12 VEVKNANDLPKLV----EGLKRLSKS---DPCVLTYMSESGEHIVAGTGELHLEICLQDL 64
Query: 74 KDR 76
+
Sbjct: 65 EHD 67
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 47
Score = 23.3 bits (51), Expect = 2.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 51 NKQDMKNCMSVAEVH---RALGLENL-----KDRTFQIFKTSAKEGE 89
N ++KN V+E+ +GLENL +D F I K AK GE
Sbjct: 2 NLTELKN-TPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGE 47
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.6 bits (52), Expect = 2.5
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMSV 61
R +I + S D + E + + ++++ NK+D++N
Sbjct: 65 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT 124
Query: 62 AEVHRALGLENLKD----------RTFQIFKTSAKEGEGLNDSMDWLS-NALQ 103
+ E +K F + SAK +G+ + + + ALQ
Sbjct: 125 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177
>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH
{Escherichia coli [TaxId: 562]}
Length = 189
Score = 24.3 bits (52), Expect = 3.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 27 ISKEELLAMLKEEELRDAILVIL 49
+ + L M+K E+RD V+L
Sbjct: 156 LPFSQALEMIKTGEIRDGKTVLL 178
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 24.2 bits (51), Expect = 3.3
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 2 YWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMK----- 56
R + + S + +E +E + +++ + D++
Sbjct: 72 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKT 131
Query: 57 ----NCMSVAEVHRALGLENLKD-RTFQIFKTSAKEGEGLNDSMDWL 98
N M + G + K+ + SA +GL D
Sbjct: 132 LARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178
>d1qk1a2 d.128.1.2 (A:103-379) Creatine kinase, C-terminal domain
{Human (Homo sapiens), mitochondria [TaxId: 9606]}
Length = 277
Score = 24.1 bits (52), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 16 VVDSSDRDRIGISKEELLAMLKE 38
V D S+ DR+G S+ EL+ ++ +
Sbjct: 226 VFDISNLDRLGKSEVELVQLVID 248
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone,
COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 69
Score = 23.3 bits (50), Expect = 3.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 34 AMLKEEELRDAILVILANKQDMKNCMSVAEVHRA 67
E+E RD IL N QD + C E ++
Sbjct: 25 VCKPEKEERDTC--ILFNGQDSEKCKEFIEKYKE 56
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 24.2 bits (51), Expect = 4.0
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 70 LENLKDRTFQIFKTSAKEGEGLNDSMD 96
+E I SA G ++ +
Sbjct: 161 IEGTVAENAPIIPISALHGANIDVLVK 187
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 24.0 bits (50), Expect = 4.1
Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 1/101 (0%)
Query: 1 PYWRCYYSNTDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKNCMS 60
D K+ M++ + +++L K D +
Sbjct: 85 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 144
Query: 61 VAEVHRALGLENLKDRTF-QIFKTSAKEGEGLNDSMDWLSN 100
+ L Q+ S+ + +G++ L
Sbjct: 145 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 185
>d1qh4a2 d.128.1.2 (A:103-381) Creatine kinase, C-terminal domain
{Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Length = 279
Score = 24.1 bits (52), Expect = 4.1
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 10 TDAIIYVVDSSDRDRIGISKEELLAMLKEEELRDAILVILANKQDMKN 57
T A+ V D S+ DR+G S+ EL+ + + D + +++ ++ ++
Sbjct: 225 TAAVGGVFDVSNADRLGFSEVELV-----QMVVDGVKLLIEMEKRLEK 267
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 262
Score = 24.1 bits (52), Expect = 4.2
Identities = 6/30 (20%), Positives = 20/30 (66%)
Query: 9 NTDAIIYVVDSSDRDRIGISKEELLAMLKE 38
+T++ V D S++ R+G+++ + + +++
Sbjct: 220 HTESEGGVYDISNKRRLGLTEYQAVREMQD 249
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 24.1 bits (51), Expect = 4.2
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 42 RDAILVILANKQDMKN----CMSVAEVHRALGLENLKDRTFQIFKTSAKEGEGLNDSMD 96
L+I+ NK D+ + ++ + ++ I SA ++ ++
Sbjct: 139 GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAEN--VPIIPVSALHKINIDSLIE 195
>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 202
Score = 23.5 bits (50), Expect = 6.1
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 27 ISKEELLAMLKEEELRDAILVI 48
E + E+ ++I +
Sbjct: 145 YPIAEAARRVLRGEIVNSIAIA 166
>d1cq3a_ b.27.1.1 (A:) Soluble secreted chemokine inhibitor, VCCI
{Cowpox virus [TaxId: 10243]}
Length = 224
Score = 23.4 bits (50), Expect = 7.5
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 21 DRDRIGISKEELLAMLKEEELRDAILVILANK-QDMKNCMSVAEVHRALGLENLKDRTFQ 79
+D I++EE L+M+K+ E+ I K ++K H LG + + +
Sbjct: 106 GKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKT-------HPVLG----SNISHK 154
Query: 80 IFKTSAKEGEGLND 93
G + D
Sbjct: 155 KVSYEDIIGSTIVD 168
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia
coli [TaxId: 562]}
Length = 186
Score = 23.1 bits (49), Expect = 7.8
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 27 ISKEELLAMLKEEELRDAILVI 48
++ +L++ + +A V
Sbjct: 151 WPLAHMMDLLEDPDFNEARNVS 172
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 73
Score = 22.4 bits (48), Expect = 8.7
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 23 DRIGISKEELLAMLK---EEELRDAILVILANKQDMK 56
R G+++EEL + + A+L + + ++
Sbjct: 23 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQ 59
>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 291
Score = 23.0 bits (49), Expect = 9.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 14 IYVVDSSDRDRIGISKEEL 32
IYV DS IG+ K +
Sbjct: 232 IYVTDSDSNASIGMKKYFV 250
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,959
Number of extensions: 15703
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 96
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)