BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12795
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0681900 PE=2 SV=1
Length = 2167
Score = 108 bits (270), Expect = 9e-24, Method: Composition-based stats.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 18/107 (16%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGND PLA +S + L ++YFKQ+FAQ VTNPPIDP REK+V
Sbjct: 603 MGNDTPLAVMSNREKLTFEYFKQMFAQ------------------VTNPPIDPIREKIVT 644
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWK 107
S+ C IGPE ++LE + KQC+RL L PL+S+ ++E I+ +RGW+
Sbjct: 645 SMECMIGPEGDLLETTEKQCNRLALEGPLVSIDEMEAIKKMNYRGWR 691
>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1
SV=1
Length = 2194
Score = 108 bits (269), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 18/107 (16%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGND PLA +S + L ++YFKQ+FAQ VTNPPIDP REK+V
Sbjct: 604 MGNDTPLAVMSNREKLTFEYFKQMFAQ------------------VTNPPIDPIREKIVT 645
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWK 107
S+ C +GPE ++ E + +QCHRL L PLLS ++E I+ +RGW+
Sbjct: 646 SMRCMVGPEGDLTETTEEQCHRLSLKGPLLSTKEMEAIKKMNYRGWR 692
>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana
GN=GLT1 PE=1 SV=2
Length = 2208
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 18/107 (16%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGND PLA +S + L ++YFKQ+FAQ VTNPPIDP REK+V
Sbjct: 622 MGNDTPLAVMSNREKLCFEYFKQMFAQ------------------VTNPPIDPIREKIVT 663
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWK 107
S+ C IGPE ++ E + +QCHRL L PLL + ++E I+ +RGW+
Sbjct: 664 SMECMIGPEGDLTETTEEQCHRLSLKGPLLKIEEMEAIKKMNYRGWR 710
>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os05g0555600 PE=2 SV=2
Length = 2188
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 18/107 (16%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGND PLA +S + L ++YFKQ+FAQ VTNPPIDP REK+V
Sbjct: 610 MGNDTPLAVMSNREKLTFEYFKQMFAQ------------------VTNPPIDPIREKIVT 651
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWK 107
S+ C IGPE ++ E + +QCHRL L +PLL+ ++E I+ +RGW+
Sbjct: 652 SMECMIGPEGDLSETTERQCHRLTLKSPLLNTNEMEAIKKMNYRGWR 698
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
Length = 2111
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/116 (45%), Positives = 68/116 (58%), Gaps = 22/116 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGNDA +ACLS+ LLYDYF+QLFAQ VTNPPIDP RE +VM
Sbjct: 558 MGNDAAIACLSDQPRLLYDYFRQLFAQ------------------VTNPPIDPIREAIVM 599
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHR---GWKVMKVSL 113
SL C IGP N+LE + QC RL +P P+L++ + ++ N R WKV + +
Sbjct: 600 SLQCYIGPSGNLLEINQSQCRRLRMPTPILTVEEFNALK-NVDRIYPDWKVASIDI 654
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GLT1 PE=1 SV=2
Length = 2145
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 20/118 (16%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGNDAPLACL+E LLYDYF+QLFAQ VTNPPIDP RE VM
Sbjct: 544 MGNDAPLACLNENPVLLYDYFRQLFAQ------------------VTNPPIDPIREANVM 585
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIR--LNTHRGWKVMKVSLMAD 116
SL C +GP+ N+LE + QC RL L +P+L + + ++ + W V ++ + D
Sbjct: 586 SLECYVGPQGNLLEMHSSQCDRLLLKSPILHWNEFQALKNIEAAYPSWSVAEIDITFD 643
>sp|P55038|GLTS_SYNY3 Ferredoxin-dependent glutamate synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=gltS PE=1 SV=2
Length = 1556
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 21/117 (17%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LS LLYDYFKQ FAQ VTNPPIDP RE +VM
Sbjct: 511 MGDDTPLAVLSHKPRLLYDYFKQRFAQ------------------VTNPPIDPLRENLVM 552
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSLMADL 117
SL +G N+LEP A+ + L +PL++ +L+ I+ +V +VS + DL
Sbjct: 553 SLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQ---LQVAEVSTLYDL 606
>sp|P96218|GLTB_MYCTU Glutamate synthase [NADPH] large chain OS=Mycobacterium
tuberculosis GN=gltB PE=1 SV=3
Length = 1527
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG D P+A LS+ +LYDYF QLFAQ VTNPP+D RE+VV
Sbjct: 495 MGTDTPVAVLSQRPRMLYDYFHQLFAQ------------------VTNPPLDAIREEVVT 536
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDL 95
SL G E ++L P CH++ LP P+L ++L
Sbjct: 537 SLQGTTGGERDLLNPDQNSCHQIVLPQPILRNHEL 571
>sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain
168) GN=gltA PE=2 SV=3
Length = 1520
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 18/114 (15%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MGNDAPLA LS+ L++YFKQLFAQ VTNPPID RE++V
Sbjct: 493 MGNDAPLAVLSDRAQSLFNYFKQLFAQ------------------VTNPPIDAIREQLVT 534
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSLM 114
S M +G E ++L PS + R+ L P+LS ++ H K K+ ++
Sbjct: 535 STMTWLGAEGDLLHPSERNVRRIKLYTPVLSNEQFYALKTIVHPDLKSQKIDVL 588
>sp|Q06434|GLTB_ANTSP Ferredoxin-dependent glutamate synthase OS=Antithamnion sp. GN=gltB
PE=3 SV=1
Length = 1536
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 20/102 (19%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PL LSE L+YDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 506 MGDDTPLPILSEKPHLIYDYFKQRFAQ------------------VTNPAIDPLRESLVM 547
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNT 102
SL+ +GP+ NILEP+A + L +P+++ + E+ +LN+
Sbjct: 548 SLITYLGPKGNILEPTAIMAKSIKLESPIIN--ENELAQLNS 587
>sp|Q43155|GLTB_SPIOL Ferredoxin-dependent glutamate synthase, chloroplastic OS=Spinacia
oleracea PE=1 SV=3
Length = 1517
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 18/98 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA +S+ +LYDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 479 MGDDIPLAVMSQKPHMLYDYFKQRFAQ------------------VTNPAIDPLREGLVM 520
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVI 98
SL IG NILE + ++ LP+P+L+ +LE +
Sbjct: 521 SLEVNIGKRGNILEVGPENASQVILPSPVLNEGELEAL 558
>sp|P55037|GLTB_SYNY3 Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=gltB PE=1 SV=1
Length = 1550
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG D PLA LS+ LLY+YF+QLFAQ VTNPPID RE+++
Sbjct: 520 MGADTPLAVLSDKPKLLYNYFQQLFAQ------------------VTNPPIDSIREEIIT 561
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSLMAD 116
S IG E N+L+P + C + L P+L+ DL ++ +K + + ++ D
Sbjct: 562 SAETTIGGEGNLLDPRPESCRLIELKTPILTNEDLAKLKALDDDEFKSVTLDILFD 617
>sp|P09831|GLTB_ECOLI Glutamate synthase [NADPH] large chain OS=Escherichia coli (strain
K12) GN=gltB PE=1 SV=3
Length = 1486
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D P A LS ++YDYF+Q FAQ VTNPPIDP RE VM
Sbjct: 486 MGDDTPFAVLSSQPRIIYDYFRQQFAQ------------------VTNPPIDPLREAHVM 527
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSLMADLTNE 120
SL IG E N+ + Q HRL +P+L D + + ++ + + D+T
Sbjct: 528 SLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLTTMKEEHYRADTLDITFDVTKT 587
Query: 121 S 121
+
Sbjct: 588 T 588
>sp|P23225|GLTB_MAIZE Ferredoxin-dependent glutamate synthase, chloroplastic OS=Zea mays
GN=GLSF PE=1 SV=1
Length = 1616
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 18/98 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LS+ LLYDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 576 MGDDIPLAVLSQRPHLLYDYFKQRFAQ------------------VTNPAIDPLREGLVM 617
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVI 98
SL IG NILE + ++ L +P+L+ +LE +
Sbjct: 618 SLEVNIGKRGNILEVGPENADQVALSSPVLNEGELETL 655
>sp|Q9ZNZ7|GLTB1_ARATH Ferredoxin-dependent glutamate synthase 1, chloroplastic
OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=2
Length = 1648
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LS+ +LYDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 610 MGDDIPLAGLSQRPHMLYDYFKQRFAQ------------------VTNPAIDPLREGLVM 651
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVM 109
SL IG NILE + ++ L NP+L+ LE + + + KV+
Sbjct: 652 SLEVNIGKRGNILELGPENASQVILSNPVLNEGALEELMKDQYLKPKVL 700
>sp|Q9T0P4|GLTB2_ARATH Ferredoxin-dependent glutamate synthase 2, chloroplastic
OS=Arabidopsis thaliana GN=GLU2 PE=1 SV=2
Length = 1629
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 18/96 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D P+A LS+ +LYDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 586 MGDDTPVAVLSQKPHMLYDYFKQRFAQ------------------VTNPAIDPLREGLVM 627
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLE 96
SL IG NILE + ++ L P+L+ +LE
Sbjct: 628 SLEVNIGKRGNILEVGPQNVSQVVLSGPVLNERELE 663
>sp|Q69RJ0|GLTB_ORYSJ Ferredoxin-dependent glutamate synthase, chloroplastic OS=Oryza
sativa subsp. japonica GN=GLU PE=2 SV=2
Length = 1615
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 18/96 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LS+ +L+DYFKQ FAQ VTNP IDP RE +VM
Sbjct: 575 MGDDIPLAVLSQKPHMLFDYFKQRFAQ------------------VTNPAIDPLREGLVM 616
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLE 96
SL IG NILE + ++ L +P+L+ +LE
Sbjct: 617 SLEVNIGKRRNILEVGPENADQVTLSSPVLNEGELE 652
>sp|P51375|GLTB_PORPU Ferredoxin-dependent glutamate synthase OS=Porphyra purpurea
GN=gltB PE=3 SV=1
Length = 1538
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 18/98 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LSE +LYDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 510 MGDDIPLAILSEKSHILYDYFKQRFAQ------------------VTNPAIDPLRESLVM 551
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVI 98
SL IG ++N+L+ + L +P+++ +L I
Sbjct: 552 SLTIQIGHKSNLLDDQPVLAKHIKLDSPIINEGELNAI 589
>sp|Q1XDB2|GLTB_PORYE Ferredoxin-dependent glutamate synthase OS=Porphyra yezoensis
GN=gltB PE=3 SV=1
Length = 1538
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 26/110 (23%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PL+ LSE +LYDYFKQ FAQ VTNP IDP RE +VM
Sbjct: 510 MGDDIPLSILSEKSHILYDYFKQRFAQ------------------VTNPAIDPLRESLVM 551
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLL------SLYD--LEVIRLNT 102
SL IG ++N+L+ + L +P++ ++++ L IR+NT
Sbjct: 552 SLAIQIGHKSNLLDDQPTLAKHIKLESPVINEGELNAIFESKLSCIRINT 601
>sp|O19906|GLTB_CYACA Ferredoxin-dependent glutamate synthase OS=Cyanidium caldarium
GN=gltB PE=3 SV=1
Length = 1549
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 20/99 (20%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LS +LYDYFKQ FAQ VTNPPID RE +VM
Sbjct: 514 MGDDTPLAVLSGKSHVLYDYFKQRFAQ------------------VTNPPIDSLRESLVM 555
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIR 99
S+ +G + N E S+++ L + P+LS DL +I+
Sbjct: 556 SISSYLGSKTNSFEESSEKI--LKIKTPILSENDLVLIK 592
>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense
GN=gltB PE=1 SV=1
Length = 1515
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D+P+A LS+ L+ +F+Q F+Q VTNPPID RE+ VM
Sbjct: 515 MGDDSPIAVLSDKYRGLHHFFRQNFSQ------------------VTNPPIDSLRERRVM 556
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIR 99
SL +G NIL+ Q L L +P+L+ + +R
Sbjct: 557 SLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR 595
>sp|Q96Q05|TPPC9_HUMAN Trafficking protein particle complex subunit 9 OS=Homo sapiens
GN=TRAPPC9 PE=1 SV=2
Length = 1148
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 57 KVVMSLMCPIGPEANILEPSAKQCHRLFL---PNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
K V ++ C + P +I EP + C++L L P LSL D + THRGW +++ L
Sbjct: 408 KRVAAMQC-VAP--SIAEPGWRACYKLLLETLPGYSLSL-DPKDFSRGTHRGWAAVQMRL 463
Query: 114 MADLTNES 121
+ +L S
Sbjct: 464 LHELVYAS 471
>sp|Q32PH0|TPPC9_BOVIN Trafficking protein particle complex subunit 9 OS=Bos taurus
GN=TRAPPC9 PE=2 SV=1
Length = 1138
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 57 KVVMSLMCPIGPEANILEPSAKQCHRLFL---PNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
K V ++ C + P +I EP + C++L L P LSL D + THRGW +++ L
Sbjct: 399 KRVAAMQC-VAP--SISEPGWRACYKLLLETLPGYSLSL-DPQDFNKGTHRGWAAVQMRL 454
Query: 114 MADLTNES 121
+ +L S
Sbjct: 455 LHELVYAS 462
>sp|Q6PA97|TPPC9_XENLA Trafficking protein particle complex subunit 9 OS=Xenopus laevis
GN=trappc9 PE=2 SV=1
Length = 1151
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 57 KVVMSLMCPIGPEANILEPSAKQCHRLFL---PNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
K V ++ C + P +I+EP K C++L L P LSL D + TH+GW +++ L
Sbjct: 408 KRVAAMQC-VAP--SIVEPGWKACYKLLLETLPGYSLSL-DPKDFSKGTHKGWAAVQMRL 463
Query: 114 MADLTNES 121
+ +L S
Sbjct: 464 LHELVYAS 471
>sp|Q3U0M1|TPPC9_MOUSE Trafficking protein particle complex subunit 9 OS=Mus musculus
GN=Trappc9 PE=1 SV=2
Length = 1148
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 57 KVVMSLMCPIGPEANILEPSAKQCHRLFL---PNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
K V ++ C + P +I EP + C++L L P LSL D + THRGW +++ L
Sbjct: 408 KRVAAMQC-VAP--SIAEPGWRACYKLLLETLPGYSLSL-DPKDFSKGTHRGWAAVQMRL 463
Query: 114 MADLTNES 121
+ +L S
Sbjct: 464 LHELVYAS 471
>sp|Q02216|MASY_CANTR Malate synthase, glyoxysomal OS=Candida tropicalis GN=PMS1 PE=3
SV=1
Length = 551
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 28 LLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVMSLMCPIGPEANILE 74
L+PV+L V + Q++ PP +PF+ L+ P P A I E
Sbjct: 380 LVPVVLKVFNEHMKGPNQISLPPKEPFKPITQRDLLSPFVPGAKITE 426
>sp|Q24VC7|HEM1_DESHY Glutamyl-tRNA reductase OS=Desulfitobacterium hafniense (strain
Y51) GN=hemA PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 50 PIDPFREKVVMSLMCPI------GPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTH 103
PID +EK++ S+ I P AN+ E + L+ L +L+DL+ L+ H
Sbjct: 369 PIDEKQEKIIRSMANSIVTHLLHAPIANLKEAANTSQGHLY-TEILQNLFDLDGNELSPH 427
Query: 104 RGWKV 108
GW V
Sbjct: 428 AGWSV 432
>sp|B8G2M3|HEM1_DESHD Glutamyl-tRNA reductase OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=hemA PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 50 PIDPFREKVVMSLMCPI------GPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTH 103
PID +EK++ S+ I P AN+ E + L+ L +L+DL+ L+ H
Sbjct: 369 PIDEKQEKIIRSMANSIVTHLLHAPIANLKEAANTSQGHLY-TEILQNLFDLDGNELSPH 427
Query: 104 RGWKV 108
GW V
Sbjct: 428 AGWSV 432
>sp|Q6NVV3|NIPA3_HUMAN Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1
Length = 410
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 42 LSLQVTNPPIDPFREKVVMSLMCPIGPEA 70
+ QV PP +P RE V+SL+CP +A
Sbjct: 1 MGAQVRLPPGEPCREGYVLSLVCPNSSQA 29
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,064,150
Number of Sequences: 539616
Number of extensions: 1432955
Number of successful extensions: 3881
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3836
Number of HSP's gapped (non-prelim): 31
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)