Query psy12795
Match_columns 121
No_of_seqs 119 out of 792
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:49:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ea0_A Glutamate synthase [NAD 100.0 3.3E-39 1.1E-43 304.5 4.7 98 1-118 479-576 (1479)
2 1ofd_A Ferredoxin-dependent gl 100.0 7.1E-39 2.4E-43 302.9 6.3 97 1-118 475-571 (1520)
3 3bxl_B CAM, voltage-dependent 38.2 12 0.0004 21.0 1.0 11 16-26 7-17 (26)
4 3dve_B Voltage-dependent N-typ 34.6 13 0.00043 20.3 0.7 9 16-24 10-18 (23)
5 3dvk_B Voltage-dependent R-typ 28.3 22 0.00076 19.2 1.1 9 16-24 11-19 (23)
6 1x4p_A Putative splicing facto 24.9 45 0.0015 22.1 2.3 23 4-26 34-56 (66)
7 1du2_A DNA polymerase III; alp 23.1 42 0.0014 22.5 1.9 31 12-53 43-73 (76)
8 2ket_A Cathelicidin-6; antimic 21.9 33 0.0011 19.1 1.0 14 19-32 8-21 (27)
9 2c9i_A Green fluorescent prote 21.0 26 0.00088 27.8 0.6 17 9-25 66-82 (226)
10 2hqk_A CYAN fluorescent chromo 20.0 25 0.00084 27.8 0.3 17 9-25 64-80 (219)
No 1
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=100.00 E-value=3.3e-39 Score=304.55 Aligned_cols=98 Identities=37% Similarity=0.547 Sum_probs=95.7
Q ss_pred CCCCcccccccCCCCchHHHHHHHhhhhcchhhhhhhccccccccccCCCCCCccccceeeeeeeecCCCcCCCCCCCCc
Q psy12795 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVMSLMCPIGPEANILEPSAKQC 80 (121)
Q Consensus 1 MG~DtPLA~LS~~~~~L~dYFkQ~FA~~~~~~~~~~~~~~~~~~QVTNPPIDpiRE~~VmSl~~~lG~~~nil~~~~~~~ 80 (121)
||+||||||||+++++|||||||+|| ||||||||||||++||||.|+||+++|+|++++++|
T Consensus 479 MG~D~pla~ls~~~~~l~~yFkq~fA------------------qVTNPpiD~iRE~~v~sl~~~~G~~~n~l~~~~~~~ 540 (1479)
T 1ea0_A 479 MGDDSPIAVLSDKYRGLHHFFRQNFS------------------QVTNPPIDSLRERRVMSLKTRLGNLGNILDEDETQT 540 (1479)
T ss_dssp SCCCSCCGGGCSSCCCGGGTEEECCC------------------CSSSCCCCTTTTGGGCCCCEEESCCSCTTCCSGGGS
T ss_pred CCCCchhhhhcCCCcchHHHHHHHhh------------------hccCCCccchhhhceeeccccccCCcccCCCCccCC
Confidence 99999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ceEEcCCcccCHHHHHHHHhccCCCceeEEEEeeEeCC
Q psy12795 81 HRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSLMADLT 118 (121)
Q Consensus 81 ~rL~L~SPVLs~~~l~~i~~~~~~~~~~~~l~~~~~~~ 118 (121)
++|+|+||||++.|+++|+++ ++|++.+|+++|+++
T Consensus 541 ~~~~l~~Pil~~~~~~~l~~~--~~~~~~~~~~~~~~~ 576 (1479)
T 1ea0_A 541 RLLQLESPVLTTAEFRAMRDY--MGDTAAEIDATFPVD 576 (1479)
T ss_dssp CSEEESCSBCCHHHHHHHHHH--HGGGEEEEECEEEST
T ss_pred CEEEeCCCcCCHHHHHHHhcc--CCCceEEEEEEEECC
Confidence 999999999999999999987 379999999999876
No 2
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=100.00 E-value=7.1e-39 Score=302.85 Aligned_cols=97 Identities=51% Similarity=0.786 Sum_probs=94.8
Q ss_pred CCCCcccccccCCCCchHHHHHHHhhhhcchhhhhhhccccccccccCCCCCCccccceeeeeeeecCCCcCCCCCCCCc
Q psy12795 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVMSLMCPIGPEANILEPSAKQC 80 (121)
Q Consensus 1 MG~DtPLA~LS~~~~~L~dYFkQ~FA~~~~~~~~~~~~~~~~~~QVTNPPIDpiRE~~VmSl~~~lG~~~nil~~~~~~~ 80 (121)
||+||||||||+++++|||||||+|| ||||||||||||++||||.|+||+++|+|++++++|
T Consensus 475 MG~D~plavls~~~~~l~~yFkQ~fA------------------qVTNPpiD~iRE~~v~Sl~~~~G~~~n~l~~~~~~~ 536 (1520)
T 1ofd_A 475 MGDDTPLAVLSHKPRLLYDYFKQRFA------------------QVTNPPIDPLRENLVMSLAMFLGKRGNLLEPKAESA 536 (1520)
T ss_dssp SCCCSCCTTTCSSCCCGGGGEEECCC------------------CSSSCCCCTTTTGGGCBCCEEESCCCCSSSCCGGGG
T ss_pred CCCCchhhhhcCCCccHHHHHHHhhh------------------hccCCCccchhhhheeeccccccCCCCCCCCCcCCC
Confidence 99999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ceEEcCCcccCHHHHHHHHhccCCCceeEEEEeeEeCC
Q psy12795 81 HRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSLMADLT 118 (121)
Q Consensus 81 ~rL~L~SPVLs~~~l~~i~~~~~~~~~~~~l~~~~~~~ 118 (121)
++|+|+||||++.|+++|++ ++|++.+|+++|+++
T Consensus 537 ~~~~l~~Pil~~~~~~~~~~---~~~~~~~~~~~~~~~ 571 (1520)
T 1ofd_A 537 RTIKLRSPLVNEVELQAIKT---GQLQVAEVSTLYDLD 571 (1520)
T ss_dssp CEEEESCSBCCHHHHHHHHH---SSSCEEEEECEEECS
T ss_pred CEEEeCCCccCHHHHHHHhc---CCCceEEEEEEEeCC
Confidence 99999999999999999998 379999999999876
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=38.23 E-value=12 Score=20.98 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.6
Q ss_pred chHHHHHHHhh
Q psy12795 16 LLYDYFKQLFA 26 (121)
Q Consensus 16 ~L~dYFkQ~FA 26 (121)
++||||||.=+
T Consensus 7 mI~e~yrq~K~ 17 (26)
T 3bxl_B 7 MIMDYYKQSKV 17 (26)
T ss_pred HHHHHHHHHHh
Confidence 57999999644
No 4
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=34.65 E-value=13 Score=20.27 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=7.5
Q ss_pred chHHHHHHH
Q psy12795 16 LLYDYFKQL 24 (121)
Q Consensus 16 ~L~dYFkQ~ 24 (121)
+++|||||.
T Consensus 10 lI~d~~r~~ 18 (23)
T 3dve_B 10 MIFDFYKQN 18 (26)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 478999986
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=28.31 E-value=22 Score=19.24 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=7.5
Q ss_pred chHHHHHHH
Q psy12795 16 LLYDYFKQL 24 (121)
Q Consensus 16 ~L~dYFkQ~ 24 (121)
+++|||||.
T Consensus 11 lI~d~~r~~ 19 (23)
T 3dvk_B 11 MIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999986
No 6
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=24.86 E-value=45 Score=22.14 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.0
Q ss_pred CcccccccCCCCchHHHHHHHhh
Q psy12795 4 DAPLACLSEFQPLLYDYFKQLFA 26 (121)
Q Consensus 4 DtPLA~LS~~~~~L~dYFkQ~FA 26 (121)
+-.+..|++..-.-|.|+||..|
T Consensus 34 nPaf~FL~D~~S~eykYYr~Kla 56 (66)
T 1x4p_A 34 DPAYWFLSDENSLEYKYYKLKLA 56 (66)
T ss_dssp SGGGCTTTCCSSSHHHHHHHHHH
T ss_pred CCceeeeeCCCcHHHHHHHHHHH
Confidence 34567899999999999999998
No 7
>1du2_A DNA polymerase III; alpha helix, transferase; HET: DNA; NMR {Escherichia coli} SCOP: a.237.1.1 PDB: 2ae9_A* 2axd_S* 2xy8_B*
Probab=23.12 E-value=42 Score=22.52 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCCCchHHHHHHHhhhhcchhhhhhhccccccccccCCCCCC
Q psy12795 12 EFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDP 53 (121)
Q Consensus 12 ~~~~~L~dYFkQ~FA~~~~~~~~~~~~~~~~~~QVTNPPIDp 53 (121)
+.|..+-+||+|+.+ -|=.+|.|...-|.+|
T Consensus 43 ~~pe~~R~~F~eRL~-----------~YR~~~~~~~~~~~~p 73 (76)
T 1du2_A 43 EQPEHLRSWFRERLI-----------AHRLASVNLSRLPYEP 73 (76)
T ss_dssp HCCSHHHHHHHGGGC-----------CSCCCCSSSCCCCCCC
T ss_pred cCCHHHHHHHHHHHH-----------HHHHHHHhcCCCCCCC
Confidence 357788999999998 7888899999988887
No 8
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=21.86 E-value=33 Score=19.08 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=10.6
Q ss_pred HHHHHHhhhhcchh
Q psy12795 19 DYFKQLFAQLLPVL 32 (121)
Q Consensus 19 dYFkQ~FA~~~~~~ 32 (121)
.-||.+|..|-||+
T Consensus 8 kkfkklfkklspvi 21 (27)
T 2ket_A 8 KKFKKLFKKLSPVI 21 (27)
T ss_dssp HHHHHHHHHHSCSC
T ss_pred HHHHHHHHhcCccc
Confidence 45888888887775
No 9
>2c9i_A Green fluorescent protein ASFP499; beta-barrel, bioluminescence, luminescence, luminescent protein; HET: CRQ; 1.82A {Anemonia sulcata}
Probab=20.96 E-value=26 Score=27.81 Aligned_cols=17 Identities=24% Similarity=0.551 Sum_probs=14.7
Q ss_pred cccCCCCchHHHHHHHh
Q psy12795 9 CLSEFQPLLYDYFKQLF 25 (121)
Q Consensus 9 ~LS~~~~~L~dYFkQ~F 25 (121)
|..+.|..+-|||||.|
T Consensus 66 ~F~kYP~~i~DyFKqsf 82 (226)
T 2c9i_A 66 VFAKYPKEIPDFFKQSL 82 (226)
T ss_dssp TSCBCCTTSCCHHHHHT
T ss_pred ecccCCCCCCCHHHHhC
Confidence 56677889999999999
No 10
>2hqk_A CYAN fluorescent chromoprotein; 11-stranded beta barrel, luminescent protein; HET: PIA; 1.19A {Clavularia SP} PDB: 2ote_A* 2otb_A* 2vzx_A* 3adf_A* 2gw4_A*
Probab=19.96 E-value=25 Score=27.81 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=14.8
Q ss_pred cccCCCCchHHHHHHHh
Q psy12795 9 CLSEFQPLLYDYFKQLF 25 (121)
Q Consensus 9 ~LS~~~~~L~dYFkQ~F 25 (121)
|..+.|..+-|||||.|
T Consensus 64 ~F~kYP~~i~DyFK~sf 80 (219)
T 2hqk_A 64 AFTKYPDDIPNYFKQSF 80 (219)
T ss_dssp TSCBCCTTSCCHHHHTT
T ss_pred ccccCCcccchHHHhhC
Confidence 56678889999999999
Done!