RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12795
(121 letters)
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 159 bits (405), Expect = 7e-47
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D+P+A LS+ L+ +F+Q F+Q VTNPPID RE+ VM
Sbjct: 479 MGDDSPIAVLSDKYRGLHHFFRQNFSQ------------------VTNPPIDSLRERRVM 520
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
SL +G NIL+ Q L L +P+L+ + +R + G ++
Sbjct: 521 SLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR--DYMGDTAAEIDA 571
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 158 bits (401), Expect = 3e-46
Identities = 47/113 (41%), Positives = 61/113 (53%), Gaps = 21/113 (18%)
Query: 1 MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
MG+D PLA LS LLYDYFKQ FAQ VTNPPIDP RE +VM
Sbjct: 475 MGDDTPLAVLSHKPRLLYDYFKQRFAQ------------------VTNPPIDPLRENLVM 516
Query: 61 SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
SL +G N+LEP A+ + L +PL++ +L+ I+ +V +VS
Sbjct: 517 SLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIK---TGQLQVAEVST 566
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown
function, PSI-2, protein structure initiative; HET: MSE
ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Length = 257
Score = 29.9 bits (68), Expect = 0.14
Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 69 EANILEPSAKQCHRLFLP--NPLLSLYDL 95
E + + KQ + P + + +
Sbjct: 126 ERIAIS-AMKQSLKASFPVIRVNIPIQTV 153
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification,
PUA domain, M3U, SAM, structural genomics, NPPSFA; HET:
SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Length = 229
Score = 29.1 bits (66), Expect = 0.24
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 69 EANILEPSAKQCHRLFLP--NPLLSLYDL 95
+ ++E + KQ R + L DL
Sbjct: 124 KRIVIE-AMKQSRRPIPMEIKKPVRLSDL 151
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW
YORK SGX research CEN structural genomics, nysgxrc; HET:
MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2
c.116.1.5 PDB: 1nxz_A
Length = 257
Score = 29.1 bits (66), Expect = 0.30
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 69 EANILEPSAKQCHRLFLP--NPLLSLYDL 95
+ + + +QC R +P PL+ L D
Sbjct: 134 QKIAIA-ACEQCGRNIVPEIRPLMKLQDW 161
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} SCOP:
b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Length = 228
Score = 28.7 bits (65), Expect = 0.34
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 69 EANILEPSAKQCHRLFLP--NPLLSLYDL 95
A LE +AKQ R+ +P P + L +
Sbjct: 122 RAVALE-AAKQSGRVVVPEVLPPIPLKAV 149
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function;
2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Length = 268
Score = 28.8 bits (65), Expect = 0.36
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 69 EANILEPSAKQCHRLFLP--NPLLSLYDL 95
E +A+Q +R +P + S L
Sbjct: 135 TKIAKE-AAEQSYRNEVPRVMDVHSFQQL 162
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural
genomics, joint center for structural genomics, JCSG;
2.12A {Thermotoga maritima}
Length = 234
Score = 28.7 bits (65), Expect = 0.43
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 69 EANILEPSAKQCHRLFLP--NPLLSL 92
+ + E +AKQC R P + L L
Sbjct: 132 KIVVRE-AAKQCKRYLFPKVSFLEKL 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.70
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 45/135 (33%)
Query: 5 APLACLSEFQPLL-------YDYF-KQL---FAQLLPVLLSVTTMYCSLSLQVTNPPI-- 51
P++C PL+ Y K L +L L T S L VT I
Sbjct: 234 IPISC-----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG--HSQGL-VTAVAIAE 285
Query: 52 ----DPFREKV--VMSLMCPIG-------PEANILEPSAKQ---CHRLFLPNPLLSLYDL 95
+ F V ++++ IG P + L PS + + +P+P+LS+ +L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNL 344
Query: 96 E-------VIRLNTH 103
V + N+H
Sbjct: 345 TQEQVQDYVNKTNSH 359
Score = 27.3 bits (60), Expect = 1.5
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 21/83 (25%)
Query: 2 GNDAPLACLSEFQ-------PLLYDYFKQLFAQLLPVLLSV--TTMYCSLSLQV----TN 48
GN E + L+ D K L ++ + + L + N
Sbjct: 164 GN--TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 49 P---PIDPFREKVVMSLMCP-IG 67
P P + + +S CP IG
Sbjct: 222 PSNTPDKDYLLSIPIS--CPLIG 242
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 27.2 bits (61), Expect = 1.3
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 51 IDPFREKVVMSLMCPIGPEANILEPSAKQ 79
IDPF ++ +S++C +I EP +
Sbjct: 79 IDPFCKEPTLSMIC------SIKEPRTGE 101
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A
{Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB:
1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 26.4 bits (59), Expect = 2.4
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 51 IDPFREKVVMSLMCPIGPEANILEPSAKQ 79
IDPF + + C +ILEP Q
Sbjct: 76 IDPFFADSTLIIRC------DILEPGTLQ 98
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 26.4 bits (59), Expect = 2.9
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 51 IDPFREKVVMSLMCPIGPEANILEPSAKQ 79
IDPFR +++ + +P +
Sbjct: 88 IDPFRAAKTLNINF------FVHDPFTLE 110
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 25.8 bits (56), Expect = 3.3
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 60 MSLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVS 112
M+ + PI + +A Q + + ++ + E RL T W + +
Sbjct: 1 MASVVPIAFDQVDNNTNATQLFKNNINKTRMNDLNREETRLKTFTDWPLDWLD 53
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 25.2 bits (56), Expect = 6.6
Identities = 2/17 (11%), Positives = 6/17 (35%)
Query: 51 IDPFREKVVMSLMCPIG 67
+ +++C G
Sbjct: 76 VAAAAAAATAAVICDGG 92
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 24.9 bits (55), Expect = 8.3
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 17 LYDYFKQLFAQLLPVLLSVTTM 38
Q+ L P+ +
Sbjct: 608 YAGKISQMPVILTPLHFDRDPL 629
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.424
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,711,930
Number of extensions: 83242
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 17
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)