RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12795
         (121 letters)



>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
           central and FMN domains {Synechocystis sp. [TaxId:
           1143]}
          Length = 809

 Score =  143 bits (363), Expect = 8e-42
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 18/108 (16%)

Query: 1   MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
           MG+D PLA LS    LLYDYFKQ FAQ                  VTNPPIDP RE +VM
Sbjct: 45  MGDDTPLAVLSHKPRLLYDYFKQRFAQ------------------VTNPPIDPLRENLVM 86

Query: 61  SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKV 108
           SL   +G   N+LEP A+    + L +PL++  +L+ I+    +  +V
Sbjct: 87  SLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEV 134


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score =  142 bits (359), Expect = 3e-41
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 1   MGNDAPLACLSEFQPLLYDYFKQLFAQLLPVLLSVTTMYCSLSLQVTNPPIDPFREKVVM 60
           MG+D+P+A LS+    L+ +F+Q F+Q                  VTNPPID  RE+ VM
Sbjct: 57  MGDDSPIAVLSDKYRGLHHFFRQNFSQ------------------VTNPPIDSLRERRVM 98

Query: 61  SLMCPIGPEANILEPSAKQCHRLFLPNPLLSLYDLEVIRLNTHRGWKVMKVSL 113
           SL   +G   NIL+    Q   L L +P+L+  +   +R   + G    ++  
Sbjct: 99  SLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR--DYMGDTAAEIDA 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 424,877
Number of extensions: 16586
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)