BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12797
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
Length = 2111
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 11 DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN 66
D + F+RQ+YVLRK S+H I K + FYICSL +VYKGQ Q++ YF DLN
Sbjct: 214 DTDLFERQLYVLRKQSSHLIGKE-KWFYICSLHRETIVYKGQLAPVQVYNYFLDLN 268
>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1
SV=1
Length = 2194
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 1 MRQVFLTGKQDEE-EFKRQIYVLRKVSTHKIPKPGQ-------RFYICSLSNRIVVYKGQ 52
+ QVFLT D + + ++Q+Y+LRK+S I FYICSLS+R V+YKGQ
Sbjct: 226 IEQVFLTPSSDSKVDLEKQMYILRKLSMVSITSALNLQSDGITDFYICSLSSRTVIYKGQ 285
Query: 53 FTADQLWKYF 62
T QL +Y+
Sbjct: 286 LTPAQLGEYY 295
>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana
GN=GLT1 PE=1 SV=2
Length = 2208
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
Query: 3 QVFLT-GKQDEEEFKRQIYVLRKVSTHKIPKP-------GQRFYICSLSNRIVVYKGQFT 54
QVFLT + + +F++Q+Y+LR+VS I + FYICSLS+R +VYKGQ
Sbjct: 246 QVFLTPTTKSKADFEQQMYILRRVSMVAIRAALNLQHGAMKDFYICSLSSRTIVYKGQLK 305
Query: 55 ADQLWKYF 62
DQL Y+
Sbjct: 306 PDQLKDYY 313
>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0681900 PE=2 SV=1
Length = 2167
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 8/70 (11%)
Query: 1 MRQVFLT-GKQDEEEFKRQIYVLRKVSTHKIP------KPGQR-FYICSLSNRIVVYKGQ 52
+ QVFLT E +F++Q+Y+LR++S I + G+R FY+CSLS+R +VYKGQ
Sbjct: 227 IEQVFLTKSSSSEADFEQQLYILRRLSILSIRAALNLRRGGKRDFYMCSLSSRTIVYKGQ 286
Query: 53 FTADQLWKYF 62
QL Y+
Sbjct: 287 LKPCQLKGYY 296
>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os05g0555600 PE=2 SV=2
Length = 2188
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 1 MRQVFLT-GKQDEEEFKRQIYVLRKVSTHKIP-----KPG--QRFYICSLSNRIVVYKGQ 52
+ QVF+T + +F+RQ+YVLR+ S I K G + FY+CSLS+R +VYKGQ
Sbjct: 234 IEQVFVTKSASSKADFERQMYVLRRFSVMSIREVLGVKNGGTKDFYMCSLSSRTIVYKGQ 293
Query: 53 FTADQLWKYF 62
QL YF
Sbjct: 294 LKPSQLKGYF 303
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GLT1 PE=1 SV=2
Length = 2145
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 11 DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
+E +F+ Q+Y+LRK ++ +I FY+CSL+N +VYKGQ T Q++ Y+ DL
Sbjct: 202 NETKFRTQLYLLRKEASLQIGLENW-FYVCSLNNTTIVYKGQLTPAQVYNYYPDL 255
>sp|P55037|GLTB_SYNY3 Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=gltB PE=1 SV=1
Length = 1550
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 1 MRQVFLT---GKQDEEEFKRQIYVLRKVSTHKI--PKPGQRFYICSLSNRIVVYKGQFTA 55
M+QV++ G D+ +F+R++YV+RK++ I PK +Y+ SLS R +VYKG T
Sbjct: 170 MQQVYIARPEGLTDDLDFERKLYVIRKLTHGAIRSPKIDTYWYVASLSARTLVYKGMLTT 229
Query: 56 DQLWKYFTDLN 66
Q+ +Y+ +L+
Sbjct: 230 AQVGQYYPELH 240
>sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain
168) GN=gltA PE=2 SV=3
Length = 1520
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 1 MRQVFLTGKQDEEE---FKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQ 57
+RQVF+ D ++ F+R++YV+RK + + G FY SLS++ +VYKG T +Q
Sbjct: 147 VRQVFIGASSDLKDNLSFERKLYVIRKQAENWGVTEGLDFYFASLSSQTIVYKGLLTPEQ 206
Query: 58 LWKYFTDL 65
+ +++DL
Sbjct: 207 VDAFYSDL 214
>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense
GN=gltB PE=1 SV=1
Length = 1515
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 12 EEEFKRQIYVLRKVSTHKIPKPGQ--RFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
+E+F+ +Y++R+ K K Q FYICSLS R ++YKG F A+QL ++ DL
Sbjct: 177 DEQFELDLYIIRR-RIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDL 231
>sp|Q9ZNZ7|GLTB1_ARATH Ferredoxin-dependent glutamate synthase 1, chloroplastic
OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=2
Length = 1648
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 1 MRQVFLT-GKQDE-EEFKRQIYVLRKVSTHKIPKP--GQRFYICSLSNRIVVYKGQFTAD 56
++QVF+ K+D ++ +R++Y+ RK+ + G Y CSLSN+ +VYKG ++
Sbjct: 259 IQQVFVKIAKEDSTDDIERELYICRKLIERAVATESWGTELYFCSLSNQTIVYKGMLRSE 318
Query: 57 QLWKYFTDL 65
L ++ DL
Sbjct: 319 ALGLFYLDL 327
>sp|P96218|GLTB_MYCTU Glutamate synthase [NADPH] large chain OS=Mycobacterium
tuberculosis GN=gltB PE=1 SV=3
Length = 1527
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 2 RQVFLTGKQDEEEFKRQIYVLRKVSTHKI--PKPGQ------RFYICSLSNRIVVYKGQF 53
RQVFL G +R+ YV+RK + H++ PGQ Y SLS + +VYKG
Sbjct: 143 RQVFLAGASGMA-LERRCYVVRKRAEHELGTKGPGQDGPGRETVYFPSLSGQTLVYKGML 201
Query: 54 TADQLWKYFTDL 65
T QL ++ DL
Sbjct: 202 TTPQLKAFYLDL 213
>sp|Q69RJ0|GLTB_ORYSJ Ferredoxin-dependent glutamate synthase, chloroplastic OS=Oryza
sativa subsp. japonica GN=GLU PE=2 SV=2
Length = 1615
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 1 MRQVFL-TGKQDE-EEFKRQIYVLRKV--STHKIPKPGQRFYICSLSNRIVVYKGQFTAD 56
++Q+F+ K+D ++ +R++Y+ RK+ K Y CSLS+R +VYKG ++
Sbjct: 224 IQQIFVKVAKEDNADDIERELYICRKLIERATKSASWADELYFCSLSSRTIVYKGMLRSE 283
Query: 57 QLWKYFTDL 65
L +++ DL
Sbjct: 284 ILGQFYLDL 292
>sp|Q08258|GLTB_HORVU Ferredoxin-dependent glutamate synthase (Fragment) OS=Hordeum
vulgare PE=1 SV=2
Length = 436
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 3 QVF--LTGKQDEEEFKRQIYVLRKV--STHKIPKPGQRFYICSLSNRIVVYKGQFTADQL 58
Q+F + + D ++ +R++Y+ RK+ K Y CSLS+R ++YKG ++ L
Sbjct: 130 QIFVRIAKEDDADDIERELYICRKLIERATKSASWADELYFCSLSSRTIIYKGMLRSEVL 189
Query: 59 WKYFTDL 65
+++ DL
Sbjct: 190 GQFYLDL 196
>sp|P23225|GLTB_MAIZE Ferredoxin-dependent glutamate synthase, chloroplastic OS=Zea mays
GN=GLSF PE=1 SV=1
Length = 1616
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 12/73 (16%)
Query: 1 MRQVFL-TGKQDE-EEFKRQIYVLRKVSTHKIPKPGQRF------YICSLSNRIVVYKGQ 52
++Q+F+ K+D ++ +R++Y+ RK+ I + + F Y CSLS+R +VYKG
Sbjct: 225 IQQIFVKVAKEDNADDIERELYISRKL----IERAAKSFSWADELYFCSLSSRTIVYKGM 280
Query: 53 FTADQLWKYFTDL 65
++ L +++ DL
Sbjct: 281 LRSEVLGQFYLDL 293
>sp|Q06434|GLTB_ANTSP Ferredoxin-dependent glutamate synthase OS=Antithamnion sp. GN=gltB
PE=3 SV=1
Length = 1536
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 14 EFKRQIYVLRKVSTHKIPK----PGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN 66
+ + +Y++RK + K ++FYICS S++ +VYKG ++ L KY+ DL+
Sbjct: 169 KLDKHLYLVRKKIEKLVSKLDINTNKQFYICSFSSKTIVYKGMLRSEFLVKYYNDLS 225
>sp|Q43155|GLTB_SPIOL Ferredoxin-dependent glutamate synthase, chloroplastic OS=Spinacia
oleracea PE=1 SV=3
Length = 1517
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 1 MRQVF--LTGKQDEEEFKRQIYVLRKV-----STHKIPKPGQRFYICSLSNRIVVYKGQF 53
++QVF + + ++ +R++Y+ RK+ S+H Y CSLSN+ ++YKG
Sbjct: 128 IQQVFVRIIKEDSTDDIERELYICRKLIERAASSHTW---ASELYFCSLSNQTIIYKGML 184
Query: 54 TADQLWKYFTDL 65
++ L ++ DL
Sbjct: 185 RSEVLGMFYYDL 196
>sp|P55038|GLTS_SYNY3 Ferredoxin-dependent glutamate synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=gltS PE=1 SV=2
Length = 1556
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 13 EEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
+E R++Y+ R + K+ + FY+CS S R +VYKG + L +++ DL
Sbjct: 178 DELDRRLYIARSIIGKKL---AEDFYVCSFSCRTIVYKGMVRSIILGEFYLDL 227
>sp|Q9T0P4|GLTB2_ARATH Ferredoxin-dependent glutamate synthase 2, chloroplastic
OS=Arabidopsis thaliana GN=GLU2 PE=1 SV=2
Length = 1629
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 3 QVFLTGKQDE--EEFKRQIYVLRKVSTHKIPKP--GQRFYICSLSNRIVVYKGQFTADQL 58
QVF+ +D+ ++ +R++Y+ RK+ + Y SLSN+ +VYKG ++ L
Sbjct: 237 QVFVRIVKDDKVDDVERELYICRKLIERAVASESWASELYFSSLSNQTIVYKGMLRSEVL 296
Query: 59 WKYFTDL 65
++ DL
Sbjct: 297 GLFYPDL 303
>sp|P51375|GLTB_PORPU Ferredoxin-dependent glutamate synthase OS=Porphyra purpurea
GN=gltB PE=3 SV=1
Length = 1538
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 12 EEEFKRQIYVLRKVSTHKIPKPGQR----FYICSLSNRIVVYKGQFTADQLWKYFTDL 65
+ E ++Q++++RK I G+ FY+CSLS +VYKG + L +++ DL
Sbjct: 171 KNELEQQLFLVRKKIERYIGINGKEWAHEFYVCSLSCYTIVYKGMMRSAVLGQFYQDL 228
>sp|Q1XDB2|GLTB_PORYE Ferredoxin-dependent glutamate synthase OS=Porphyra yezoensis
GN=gltB PE=3 SV=1
Length = 1538
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1 MRQVFLTGKQ-DEEEFKRQIYVLRKVSTHKIPKPGQ----RFYICSLSNRIVVYKGQFTA 55
+ QVF ++ ++Q++++RK I G+ FYICSLS +VYKG +
Sbjct: 159 VEQVFCKSSNLSKDRLEQQLFLVRKKIEKYIGINGKDWAHEFYICSLSCYTIVYKGMMRS 218
Query: 56 DQLWKYFTDL 65
L +++ DL
Sbjct: 219 AVLGQFYQDL 228
>sp|P09831|GLTB_ECOLI Glutamate synthase [NADPH] large chain OS=Escherichia coli (strain
K12) GN=gltB PE=1 SV=3
Length = 1486
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 14 EFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
+ +R++++ R+ ++ + + FY+CSLSN + +YKG L +++ DL
Sbjct: 152 DMERRLFIARRRIEKRL-EADKDFYVCSLSNLVNIYKGLCMPTDLPRFYLDL 202
>sp|O19906|GLTB_CYACA Ferredoxin-dependent glutamate synthase OS=Cyanidium caldarium
GN=gltB PE=3 SV=1
Length = 1549
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 37 FYICSLSNRIVVYKGQFTADQLWKYFTDL 65
FY CS SN +VYKG + L +++ DL
Sbjct: 205 FYFCSCSNHTIVYKGMVKSTSLGQFYQDL 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,342,620
Number of Sequences: 539616
Number of extensions: 729893
Number of successful extensions: 2087
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2057
Number of HSP's gapped (non-prelim): 22
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)