Query psy12797
Match_columns 66
No_of_seqs 138 out of 756
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:51:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ofd_A Ferredoxin-dependent gl 99.6 2.5E-16 8.5E-21 128.0 3.5 62 1-65 128-191 (1520)
2 1ea0_A Glutamate synthase [NAD 99.6 2.4E-16 8.1E-21 127.9 3.2 65 1-65 128-195 (1479)
3 1qbf_A Peptide YY, PYY; PP-fol 50.5 3.5 0.00012 20.7 0.1 14 53-66 12-25 (37)
4 1xff_A D-fructose-6-, glucosam 47.0 14 0.00047 23.9 2.6 44 17-61 14-57 (240)
5 1f8p_A Neuropeptide Y (PNPY); 37.3 3.4 0.00012 20.8 -1.2 13 53-65 12-24 (37)
6 2ab9_A Pro-SFTI-1; protein, be 35.5 8 0.00027 18.3 0.0 27 38-64 2-28 (31)
7 2l60_A Peptide YY; GPCR ligand 35.4 3.3 0.00011 21.3 -1.4 12 54-65 17-28 (41)
8 2bf9_A Pancreatic hormone; tur 35.4 3.3 0.00011 20.7 -1.4 13 53-65 12-24 (36)
9 1bba_A Bovine pancreatic polyp 35.1 3.4 0.00012 20.7 -1.4 13 53-65 12-24 (36)
10 1jb0_J Photosystem 1 reaction 26.4 19 0.00065 18.3 0.5 9 57-65 28-36 (41)
11 2wsc_J PSAJ, PSI-J, photosyste 22.1 24 0.00081 18.2 0.4 9 57-65 28-36 (44)
No 1
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.60 E-value=2.5e-16 Score=128.02 Aligned_cols=62 Identities=32% Similarity=0.672 Sum_probs=54.9
Q ss_pred CEEEEEcCC--CChHHHHHHHHHHHHHHhhhCCCCCCceEEeccCcchhhhhcccChhchhhhccCC
Q psy12797 1 MRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65 (66)
Q Consensus 1 i~Qvfv~~~--~~~~~fer~Ly~~Rk~~e~~~~~~~~~fYi~SLSs~tivYKGml~~~qL~~fy~DL 65 (66)
|+|+||..+ .+..+|||+||.+|+++|+... .+|||||+|++|+|||||++++||..||+||
T Consensus 128 i~Q~fv~~~~~~~~~~~~r~ly~~r~~le~~~~---~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL 191 (1520)
T 1ofd_A 128 IEQILVTCPEGCAGDELDRRLYIARSIIGKKLA---EDFYVCSFSCRTIVYKGMVRSIILGEFYLDL 191 (1520)
T ss_dssp EEEEEEECTTCCCHHHHHHHHHHHHHHHGGGCB---TTBEEEEEESSEEEEEESSCHHHHHHHBHHH
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHhhcc---CCEEEEEecCcEEEEeCCccHHHHhhhhhhc
Confidence 799999543 3456899999999999999863 3599999999999999999999999999987
No 2
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.60 E-value=2.4e-16 Score=127.92 Aligned_cols=65 Identities=34% Similarity=0.716 Sum_probs=54.8
Q ss_pred CEEEEEcCC--CChHHHHHHHHHHHHHHhhhCCCC-CCceEEeccCcchhhhhcccChhchhhhccCC
Q psy12797 1 MRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKP-GQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65 (66)
Q Consensus 1 i~Qvfv~~~--~~~~~fer~Ly~~Rk~~e~~~~~~-~~~fYi~SLSs~tivYKGml~~~qL~~fy~DL 65 (66)
|+|+||..+ .+..+|||+||.+|+.+|+...+. ..+|||||+|++|+|||||++++||..||+||
T Consensus 128 i~Q~fv~~~~~~~~~~~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL 195 (1479)
T 1ea0_A 128 IEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDL 195 (1479)
T ss_dssp EEEEEEECTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGG
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhh
Confidence 699999543 345689999999999999975210 02599999999999999999999999999998
No 3
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=50.51 E-value=3.5 Score=20.73 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.2
Q ss_pred cChhchhhhccCCC
Q psy12797 53 FTADQLWKYFTDLN 66 (66)
Q Consensus 53 l~~~qL~~fy~DL~ 66 (66)
-.|+||.+||.+|+
T Consensus 12 a~pEela~Y~~~Lr 25 (37)
T 1qbf_A 12 ASPEELSRYYASLR 25 (37)
T ss_dssp SSSSTTTTTTTGGG
T ss_pred CCHHHHHHHHHHHH
Confidence 36889999998874
No 4
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=47.03 E-value=14 Score=23.94 Aligned_cols=44 Identities=2% Similarity=-0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhCCCCCCceEEeccCcchhhhhcccChhchhhh
Q psy12797 17 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKY 61 (66)
Q Consensus 17 r~Ly~~Rk~~e~~~~~~~~~fYi~SLSs~tivYKGml~~~qL~~f 61 (66)
..|+...+.++++..+. ..+++++-+.+..+||++....++...
T Consensus 14 ~~l~~~l~~l~~RG~D~-~Gi~~~~~~~~~~~~k~~g~~~~~~~~ 57 (240)
T 1xff_A 14 EILLEGLRRLEYRGYDS-AGLAVVDAEGHMTRLRRLGKVQMLAQA 57 (240)
T ss_dssp HHHHHHHHHHGGGCCSE-EEEEEECTTCCEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc-CCEEEEecCCcEEEEEcCCcHHHHHhh
Confidence 45777888889876532 235646668889999999998887653
No 5
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=37.34 E-value=3.4 Score=20.80 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.3
Q ss_pred cChhchhhhccCC
Q psy12797 53 FTADQLWKYFTDL 65 (66)
Q Consensus 53 l~~~qL~~fy~DL 65 (66)
-.|++|.+||.+|
T Consensus 12 a~pEela~Y~~~L 24 (37)
T 1f8p_A 12 APAEDLARYYSAL 24 (37)
T ss_dssp CTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3688999998776
No 6
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=35.54 E-value=8 Score=18.35 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.5
Q ss_pred EEeccCcchhhhhcccChhchhhhccC
Q psy12797 38 YICSLSNRIVVYKGQFTADQLWKYFTD 64 (66)
Q Consensus 38 Yi~SLSs~tivYKGml~~~qL~~fy~D 64 (66)
|-.|.|+-||-=.|..+-.--+-.|||
T Consensus 2 yktsistitiedngrctksippicfpd 28 (31)
T 2ab9_A 2 YKTSISTITIEDNGRCTKSIPPICFPD 28 (31)
T ss_dssp CCSSCCCSSSCCCSSCCSSSSCSSSSC
T ss_pred cccceEEEEEecCCeecccCCCcccCC
Confidence 457899999999999888877778887
No 7
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=35.44 E-value=3.3 Score=21.26 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.9
Q ss_pred ChhchhhhccCC
Q psy12797 54 TADQLWKYFTDL 65 (66)
Q Consensus 54 ~~~qL~~fy~DL 65 (66)
+|+||.+||.+|
T Consensus 17 spEela~Y~~~L 28 (41)
T 2l60_A 17 SPEELNRYYASL 28 (41)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 688999998776
No 8
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=35.40 E-value=3.3 Score=20.74 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.3
Q ss_pred cChhchhhhccCC
Q psy12797 53 FTADQLWKYFTDL 65 (66)
Q Consensus 53 l~~~qL~~fy~DL 65 (66)
-.+++|.+||.+|
T Consensus 12 A~~Eela~Y~~~L 24 (36)
T 2bf9_A 12 APVEDLIRFYNDL 24 (36)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3688999998776
No 9
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=35.13 E-value=3.4 Score=20.66 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=10.3
Q ss_pred cChhchhhhccCC
Q psy12797 53 FTADQLWKYFTDL 65 (66)
Q Consensus 53 l~~~qL~~fy~DL 65 (66)
-.|++|.+||.+|
T Consensus 12 A~pEela~Y~~~L 24 (36)
T 1bba_A 12 ATPEQMAQYAAEL 24 (36)
T ss_dssp SSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3688999998776
No 10
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=26.44 E-value=19 Score=18.33 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=6.4
Q ss_pred chhhhccCC
Q psy12797 57 QLWKYFTDL 65 (66)
Q Consensus 57 qL~~fy~DL 65 (66)
++-+||||+
T Consensus 28 EiNRffPD~ 36 (41)
T 1jb0_J 28 EFNRFYPDL 36 (41)
T ss_dssp HHHHHSCCC
T ss_pred HHHHhCccc
Confidence 456788886
No 11
>2wsc_J PSAJ, PSI-J, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_J* 2wsf_J* 2o01_J* 3lw5_J*
Probab=22.13 E-value=24 Score=18.22 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=7.0
Q ss_pred chhhhccCC
Q psy12797 57 QLWKYFTDL 65 (66)
Q Consensus 57 qL~~fy~DL 65 (66)
++-+||||+
T Consensus 28 EiNRfFPD~ 36 (44)
T 2wsc_J 28 EINRFFPDA 36 (44)
T ss_dssp SSTTTSCCC
T ss_pred HHHHhCchH
Confidence 567899986
Done!