RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12797
         (66 letters)



>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
           sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
           {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
           d.153.1.1 PDB: 2vdc_A*
          Length = 1479

 Score = 96.1 bits (240), Expect = 2e-25
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 1   MRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQR-FYICSLSNRIVVYKGQFTADQ 57
           + Q+ +   +   +E+F+  +Y++R+     +       FYICSLS R ++YKG F A+Q
Sbjct: 128 IEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQ 187

Query: 58  LWKYFTDLN 66
           L  ++ DL 
Sbjct: 188 LTTFYPDLL 196


>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
           enzyme, substrate channeling, amidotransferase,
           flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
           {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
           1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
          Length = 1520

 Score = 94.9 bits (237), Expect = 4e-25
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 1   MRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQL 58
           + Q+ +T  +    +E  R++Y+ R +   K+    + FY+CS S R +VYKG   +  L
Sbjct: 128 IEQILVTCPEGCAGDELDRRLYIARSIIGKKL---AEDFYVCSFSCRTIVYKGMVRSIIL 184

Query: 59  WKYFTDLN 66
            +++ DL 
Sbjct: 185 GEFYLDLK 192


>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
           inhibitory kinase; structural genomics, structural
           genomics consortium, SGC; 1.70A {Homo sapiens}
          Length = 311

 Score = 30.0 bits (68), Expect = 0.034
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 21/75 (28%)

Query: 8   GKQDEEEFKRQIYVLRKVSTHKIPKP-----------GQRFYI----C--SLSNRIVVYK 50
           G +D      ++    KV  H    P           G   Y+    C  SL      + 
Sbjct: 96  GPKDRARKLAEVGSHEKVGQH----PCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWG 151

Query: 51  GQFTADQLWKYFTDL 65
                 Q+W Y  D 
Sbjct: 152 ASLPEAQVWGYLRDT 166


>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
           lipoprotein, myristate, PA phosphorylation; HET: STU;
           2.6A {Homo sapiens}
          Length = 317

 Score = 26.2 bits (58), Expect = 0.69
 Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 20/85 (23%)

Query: 1   MRQVFLTGKQDEEEFKRQIYVLRKV----------STHKIPKPGQRFYI----CS----- 41
           ++++    +QD EE +R+  + R               +        ++           
Sbjct: 59  LKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLW 118

Query: 42  -LSNRIVVYKGQFTADQLWKYFTDL 65
               R+       T DQ+      +
Sbjct: 119 NEIERLKDKGNFLTEDQILWLLLGI 143


>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
           kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
          Length = 326

 Score = 24.6 bits (54), Expect = 2.2
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 22/58 (37%)

Query: 9   KQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQF-------TADQLW 59
             +EEE K++I +L+K S H+              N I  Y G F         DQLW
Sbjct: 61  GDEEEEIKQEINMLKKYSHHR--------------N-IATYYGAFIKKNPPGMDDQLW 103


>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A
           {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
          Length = 369

 Score = 24.8 bits (55), Expect = 2.3
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 15/58 (25%)

Query: 1   MRQVFLTGKQDEEEFKRQIYVLRKVSTHKI--PKPGQRFYICSLSNR------IVVYK 50
            RQV ++GK D  E       ++ ++   +   K G+ +Y   +          VV K
Sbjct: 63  ERQVEISGK-DSAEL------VQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLK 113


>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine
          5'-phosphate oxidase-related protein, structura
          genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}
          Length = 195

 Score = 24.4 bits (53), Expect = 2.6
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 43 SNRIVVYKGQFTADQLWKYFTDLN 66
          +NR +V++G        ++ TD  
Sbjct: 39 ANRTLVFRGFLEDTNQLRFITDTR 62


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 23.9 bits (51), Expect = 4.6
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 41 SLSNRIVVYKGQ-FTADQLWKYFTD 64
          SL + ++V     F A QL + F  
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNK 39


>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
          serine/threonine-protein, ATP-binding,
          calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
          cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
          Length = 298

 Score = 23.4 bits (51), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 9  KQDEEEFKRQIYVLRKVSTH 28
          ++  E   +++ +LRKVS H
Sbjct: 64 QELREATLKEVDILRKVSGH 83


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0824    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,013,422
Number of extensions: 43867
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 10
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)