RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12797
         (66 letters)



>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 53.1 bits (127), Expect = 8e-11
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 9   KQDEEEFKRQIYVLRKVSTHKIPKPG-QRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
              +E+F+  +Y++R+     +       FYICSLS R ++YKG F A+QL  ++ DL
Sbjct: 138 GVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDL 195


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 52.7 bits (126), Expect = 1e-10
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 9   KQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
               +E  R++Y+ R +   K+    + FY+CS S R +VYKG   +  L +++ DL
Sbjct: 138 GCAGDELDRRLYIARSIIGKKL---AEDFYVCSFSCRTIVYKGMVRSIILGEFYLDL 191


>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 133

 Score = 22.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 11 DEEEFKRQIYVLRKVSTHKIP-KPGQRFYICS 41
           E E++  + V   VS ++IP +   R Y  S
Sbjct: 3  AELEYESVLCVKPDVSVYRIPPRASNRGYRAS 34


>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 323

 Score = 22.0 bits (47), Expect = 7.3
 Identities = 4/27 (14%), Positives = 10/27 (37%)

Query: 23  RKVSTHKIPKPGQRFYICSLSNRIVVY 49
              +    P+  +R  +   + R+  Y
Sbjct: 203 SNYNRRFTPEIAERPKVRDQAGRMNYY 229


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,581
Number of extensions: 9487
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 5
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)