BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12798
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 97/166 (58%), Gaps = 16/166 (9%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MS G++S EAH TLA AMN++GAKSN+GEGGE+ RYL+ D +
Sbjct: 875 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEG------------N 922
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
S L H LQ + SAIKQ+ASGRFGVT YL L+IKMAQGAKPGEGG+L
Sbjct: 923 SPTLPHLHGLQ---NGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 979
Query: 121 PGYKVTKDIASTRHSVPGA-FQCYPKFQDYTVVKELFSLILAVSRI 165
PG KV++ IA R S PG P D +++L LI + +I
Sbjct: 980 PGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQI 1025
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 129 bits (323), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 34/166 (20%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MS G++S EAH TL AMN+IGAKS++GEGGE+P R+ D+N
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRP--DKN---------------- 899
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
+N SAIKQVASGRFGVT+ YL +L+IK+AQGAKPGEGG+L
Sbjct: 900 ---------------GDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 944
Query: 121 PGYKVTKDIASTRHSVPGAFQCY-PKFQDYTVVKELFSLILAVSRI 165
PG+KVT+ IA RHS PG P D +++L LI + +I
Sbjct: 945 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQI 990
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 34/166 (20%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MS G++S EAH TL AMN+IGAKS++GEGGE+P R+ D+N
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRP--DKN---------------- 899
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
+N SAIKQVASGRFGVT+ YL +L+IK+AQGAKPGEGG+L
Sbjct: 900 ---------------GDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 944
Query: 121 PGYKVTKDIASTRHSVPGAFQCY-PKFQDYTVVKELFSLILAVSRI 165
PG+KVT+ IA RHS PG P D +++L LI + +I
Sbjct: 945 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQI 990
>pdb|2OA9|A Chain A, Restriction Endonuclease Mvai In The Absence Of Dna
pdb|2OA9|B Chain B, Restriction Endonuclease Mvai In The Absence Of Dna
pdb|2OAA|A Chain A, Restriction Endonuclease Mvai-Cognate Dna Substrate
Complex
pdb|2OAA|B Chain B, Restriction Endonuclease Mvai-Cognate Dna Substrate
Complex
Length = 249
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 3 FGSISIEAHTTLAKAMNKIGAKSNTGEGGENP---ERYLSSGDENQRSAIKQVASGRFGV 59
F I I+ H T AK++ + KS T G N RY DE + + Q SG
Sbjct: 54 FHDIEIKTHETAAKSLLTLFTKSPTNPRGANTMLRNRY-GKKDEYGNNILHQTVSGNRKT 112
Query: 60 TSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAK 113
S+ ++ D +I + E+Q ++ + +S D LQ ++ + K
Sbjct: 113 NSN--SYNYDFKIDIDWESQVVRLEVFDKQDIMIDNSVYWSFDSLQNQLDKKLK 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,905,365
Number of Sequences: 62578
Number of extensions: 188580
Number of successful extensions: 384
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 14
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)