Query psy12798
Match_columns 170
No_of_seqs 116 out of 813
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 19:52:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01645 Glu_synthase: Conserv 100.0 6.3E-50 1.4E-54 355.6 9.3 130 1-169 73-204 (368)
2 COG0069 GltB Glutamate synthas 100.0 1.4E-48 3.1E-53 355.9 13.0 130 1-169 174-304 (485)
3 PRK11750 gltB glutamate syntha 100.0 1.8E-44 3.9E-49 358.4 13.4 130 1-168 866-996 (1485)
4 cd02808 GltS_FMN Glutamate syn 100.0 2.5E-38 5.4E-43 281.9 12.3 129 1-168 85-214 (392)
5 KOG0399|consensus 100.0 6.8E-38 1.5E-42 304.5 10.1 134 1-166 962-1096(2142)
6 PRK05437 isopentenyl pyrophosp 97.2 0.00075 1.6E-08 60.1 6.1 32 1-32 68-100 (352)
7 cd02811 IDI-2_FMN Isopentenyl- 95.5 0.035 7.5E-07 48.9 6.3 31 1-31 60-91 (326)
8 cd04737 LOX_like_FMN L-Lactate 91.1 0.29 6.3E-06 44.0 4.2 50 1-52 80-131 (351)
9 KOG0399|consensus 90.4 0.054 1.2E-06 56.1 -1.3 108 12-132 977-1088(2142)
10 TIGR02151 IPP_isom_2 isopenten 89.4 1.4 3.1E-05 38.8 7.1 31 1-31 61-92 (333)
11 COG0069 GltB Glutamate synthas 79.0 0.33 7.2E-06 45.7 -1.8 26 57-82 225-250 (485)
12 PF00159 Hormone_3: Pancreatic 73.9 5.1 0.00011 25.1 3.1 23 143-165 5-27 (36)
13 PF01645 Glu_synthase: Conserv 58.7 1.7 3.6E-05 39.6 -1.8 12 26-37 121-132 (368)
14 cd02809 alpha_hydroxyacid_oxid 57.2 12 0.00025 32.4 3.2 49 1-52 72-122 (299)
15 PRK11750 gltB glutamate syntha 51.9 2.6 5.7E-05 44.6 -1.9 14 67-80 928-941 (1485)
16 cd00126 PAH Pancreatic Hormone 51.2 26 0.00056 21.9 3.2 23 143-165 5-27 (36)
17 smart00309 PAH Pancreatic horm 47.1 33 0.00072 21.5 3.2 23 143-165 5-27 (36)
18 KOG1766|consensus 35.7 40 0.00086 25.7 2.7 24 143-166 45-68 (104)
19 cd04787 HTH_HMRTR_unk Helix-Tu 29.9 91 0.002 23.7 4.0 39 127-165 4-56 (133)
20 smart00760 Bac_DnaA_C Bacteria 27.2 32 0.00069 22.7 0.9 36 123-159 3-39 (60)
21 PRK00560 molybdopterin-guanine 25.6 90 0.0019 24.9 3.4 25 142-166 171-195 (196)
22 KOG3349|consensus 24.4 39 0.00084 27.9 1.1 17 46-62 37-53 (170)
23 PTZ00405 cytochrome c; Provisi 24.1 95 0.0021 23.4 3.1 22 145-166 92-113 (114)
24 PF02084 Bindin: Bindin; Inte 24.1 75 0.0016 27.6 2.8 41 122-167 102-142 (238)
25 PF09047 MEF2_binding: MEF2 bi 22.5 1.1E+02 0.0024 18.8 2.6 23 4-26 7-29 (35)
26 PF02934 GatB_N: GatB/GatE cat 22.4 75 0.0016 28.2 2.6 21 146-166 155-175 (289)
27 PF07865 DUF1652: Protein of u 21.4 91 0.002 22.0 2.4 18 148-165 50-67 (69)
28 PF12108 SF3a60_bindingd: Spli 20.6 1E+02 0.0022 18.2 2.1 19 148-166 2-20 (28)
No 1
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=100.00 E-value=6.3e-50 Score=355.57 Aligned_cols=130 Identities=48% Similarity=0.724 Sum_probs=95.5
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCc-EEEecccccccccccccchhhhhhhhhhHHH
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSA-IKQVASGRFGVTSSYLAHADDLQIKMADENQ 79 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~-I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~ 79 (170)
|||||||++|++|||+||+++||++||||||++|||+.. +.++ ||||+||+||||
T Consensus 73 MS~GaLS~~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~~-----~~~~~I~Q~~sg~fGv~------------------- 128 (368)
T PF01645_consen 73 MSYGALSEEAKEALAKGANMAGTASNTGEGGELPEERKA-----AKDLRIKQIASGRFGVR------------------- 128 (368)
T ss_dssp B-CTTC-HHHHHHHHHHHHHCT-EEEETTT---GGGCSB------TTSSEEEE-TT-TT---------------------
T ss_pred CChhhcCHHHHHHHHHHHHHhCceEecCCCCCCHHHhcc-----cCCceEEEcCCCCCCCC-------------------
Confidence 999999999999999999999999999999999999764 5778 999777777765
Q ss_pred HhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHH
Q psy12798 80 RSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSL 158 (170)
Q Consensus 80 ~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~ 158 (170)
+++|.+++|||||||||||||+||+||++|||+|||++|+++||+++ ||++||||+|++||.+|
T Consensus 129 ---------------~~~l~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~ 193 (368)
T PF01645_consen 129 ---------------PEYLKQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQL 193 (368)
T ss_dssp ---------------HHHHCC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHH
T ss_pred ---------------HHHhcCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHH
Confidence 45588999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHhhCCC
Q psy12798 159 ILAVSRILSSK 169 (170)
Q Consensus 159 I~~Lr~~~~~~ 169 (170)
|++||+++++|
T Consensus 194 I~~Lr~~~~~~ 204 (368)
T PF01645_consen 194 IEELRELNPGK 204 (368)
T ss_dssp HHHHHHH-TTS
T ss_pred HHHHHhhCCCC
Confidence 99999999665
No 2
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=355.87 Aligned_cols=130 Identities=60% Similarity=0.869 Sum_probs=119.6
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR 80 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~ 80 (170)
|||||||+||++|||+|++++|+.+||||||++|+++.. .+++|+||+||
T Consensus 174 MS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~~-----~~s~I~QvaSG------------------------- 223 (485)
T COG0069 174 MSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYED-----GRSAIKQVASG------------------------- 223 (485)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhcc-----ccceEEEeccc-------------------------
Confidence 999999999999999999999999999999999999842 57788885555
Q ss_pred hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798 81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI 159 (170)
Q Consensus 81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I 159 (170)
||||+++||.++++||||++||||||+|||||+.|||++||++|+++||+++ |||||||||||+||.+||
T Consensus 224 ---------RFGV~~~yL~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI 294 (485)
T COG0069 224 ---------RFGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLI 294 (485)
T ss_pred ---------cCccCHHHhCccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHH
Confidence 5555556799999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhCCC
Q psy12798 160 LAVSRILSSK 169 (170)
Q Consensus 160 ~~Lr~~~~~~ 169 (170)
++||++++.+
T Consensus 295 ~dLk~~~~~~ 304 (485)
T COG0069 295 KDLKEANPWA 304 (485)
T ss_pred HHHHhcCCCC
Confidence 9999998654
No 3
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=100.00 E-value=1.8e-44 Score=358.41 Aligned_cols=130 Identities=54% Similarity=0.814 Sum_probs=118.4
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR 80 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~ 80 (170)
|||||||+||++|||+||+++|+.+||||||++|+|+.. ...++|+||+||+|
T Consensus 866 MSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~~----~~~~~i~QiaSGrF----------------------- 918 (1485)
T PRK11750 866 MSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGT----EKVSKIKQVASGRF----------------------- 918 (1485)
T ss_pred CCCCccCHHHHHHHHHHHHHhCCceecCCCCCCHHHHhc----ccCCeEEEccCCcC-----------------------
Confidence 999999999999999999999999999999999999743 23677888555555
Q ss_pred hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798 81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI 159 (170)
Q Consensus 81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I 159 (170)
||++++|.+++|||||||||||||.||+||+.|||++||++|+++||+++ ||||||||||+|||.+||
T Consensus 919 -----------Gv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI 987 (1485)
T PRK11750 919 -----------GVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLI 987 (1485)
T ss_pred -----------CCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHH
Confidence 55556688999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhCC
Q psy12798 160 LAVSRILSS 168 (170)
Q Consensus 160 ~~Lr~~~~~ 168 (170)
++||+++..
T Consensus 988 ~~Lk~~~~~ 996 (1485)
T PRK11750 988 FDLKQVNPK 996 (1485)
T ss_pred HHHHHhCCC
Confidence 999998764
No 4
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00 E-value=2.5e-38 Score=281.91 Aligned_cols=129 Identities=48% Similarity=0.688 Sum_probs=121.1
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR 80 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~ 80 (170)
|||||+|++|+.|||.|++++|+.+||||||++|||+.. ..++|+|+++++|||+.+
T Consensus 85 Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg~~~~~~~~-----~~~~i~q~~~~~fGv~~~------------------ 141 (392)
T cd02808 85 MSFGALSKEAKEALAIGAALAGTASNTGEGGELPEEREG-----GGDIIKQVASGRFGVRPE------------------ 141 (392)
T ss_pred CCCCcccHHHHHHHHHHHHhcCCceeecCCCCCHHHHhh-----hhheEEEecCCCCccCHH------------------
Confidence 999999999999999999999999999999999999753 589999999988888874
Q ss_pred hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798 81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI 159 (170)
Q Consensus 81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I 159 (170)
++..++|||||++||||||+||+||++|||.|||.+|++++|+++ ||++||+|++++||.++|
T Consensus 142 ----------------~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I 205 (392)
T cd02808 142 ----------------YLNKADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLI 205 (392)
T ss_pred ----------------HcccCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHH
Confidence 245589999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhCC
Q psy12798 160 LAVSRILSS 168 (170)
Q Consensus 160 ~~Lr~~~~~ 168 (170)
++||+.+++
T Consensus 206 ~~lr~~~~~ 214 (392)
T cd02808 206 EDLREATGG 214 (392)
T ss_pred HHHHHhCCC
Confidence 999998863
No 5
>KOG0399|consensus
Probab=100.00 E-value=6.8e-38 Score=304.52 Aligned_cols=134 Identities=62% Similarity=0.860 Sum_probs=125.0
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHH
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQR 80 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~ 80 (170)
|||||+|.|++++||.|+++.|..+||||||..|++++..- |+. ...+
T Consensus 962 MS~GsIS~EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~---------------------------d~~-----d~~r 1009 (2142)
T KOG0399|consen 962 MSYGSISMETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLA---------------------------DGV-----DTMR 1009 (2142)
T ss_pred ccccccchhhHHHHHHHHHhhcCcCCCCCCCCChhhccccc---------------------------ccc-----hHHH
Confidence 99999999999999999999999999999999999865311 110 3578
Q ss_pred hhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798 81 SAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI 159 (170)
Q Consensus 81 ~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I 159 (170)
+.|+|+|||||||++.||.+||.+|||++||||||+||.||++||+..||++|+..+|+.+ ||||||||||+|||.++|
T Consensus 1010 SAIKQVASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLI 1089 (2142)
T KOG0399|consen 1010 SAIKQVASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLI 1089 (2142)
T ss_pred HHHHHHhccccccchhhccCchhhhhHHhcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhh
Q psy12798 160 LAVSRIL 166 (170)
Q Consensus 160 ~~Lr~~~ 166 (170)
.+|+...
T Consensus 1090 yDLk~aN 1096 (2142)
T KOG0399|consen 1090 YDLKCAN 1096 (2142)
T ss_pred HHhhccC
Confidence 9999854
No 6
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.20 E-value=0.00075 Score=60.09 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCC-cCCHHHHHHHHHHHHhhCCCCccCCCCC
Q psy12798 1 MSFG-SISIEAHTTLAKAMNKIGAKSNTGEGGE 32 (170)
Q Consensus 1 MSyG-ALS~~A~~ALa~ga~~~Gt~~nTGEGg~ 32 (170)
|++| .++.+...+|++++..+|+++++|+.+.
T Consensus 68 MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~ 100 (352)
T PRK05437 68 MTGGSEKAKEINRKLAEAAEELGIAMGVGSQRA 100 (352)
T ss_pred cCCCChhHHHHHHHHHHHHHHcCCCeEecccHh
Confidence 8888 5788999999999999999999999983
No 7
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.54 E-value=0.035 Score=48.88 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCCC-cCCHHHHHHHHHHHHhhCCCCccCCCC
Q psy12798 1 MSFG-SISIEAHTTLAKAMNKIGAKSNTGEGG 31 (170)
Q Consensus 1 MSyG-ALS~~A~~ALa~ga~~~Gt~~nTGEGg 31 (170)
|+.| ..+++...+|++++...|+++++|.++
T Consensus 60 mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~ 91 (326)
T cd02811 60 MTGGSEKAKEINRNLAEAAEELGIAMGVGSQR 91 (326)
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCeEecCch
Confidence 7888 567778899999999999999999985
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.06 E-value=0.29 Score=43.99 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCCcCC-HHHHHHHHHHHHhhCCCCc-cCCCCCCccccccCCCCcCCCcEEEe
Q psy12798 1 MSFGSIS-IEAHTTLAKAMNKIGAKSN-TGEGGENPERYLSSGDENQRSAIKQV 52 (170)
Q Consensus 1 MSyGALS-~~A~~ALa~ga~~~Gt~~n-TGEGg~~pe~~~~~~~~~~~~~I~Qi 52 (170)
|+|..|. +++-+|+|+||..+|+.++ |..+..+.|+..... ..+...||+
T Consensus 80 ~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~--~~~~~wfQl 131 (351)
T cd04737 80 IAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKAS--NGGPKWFQL 131 (351)
T ss_pred HHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhc--CCCCeEEEE
Confidence 4455553 4788999999999999888 899999999976421 023577774
No 9
>KOG0399|consensus
Probab=90.36 E-value=0.054 Score=56.08 Aligned_cols=108 Identities=34% Similarity=0.433 Sum_probs=69.5
Q ss_pred HHHHHHHHhhCCCCccCCCCCCccccccCCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHHHhhhhhhhcCCc
Q psy12798 12 TTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQRSAIKQVASGRF 91 (170)
Q Consensus 12 ~ALa~ga~~~Gt~~nTGEGg~~pe~~~~~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~~~~~~q~a~grf 91 (170)
+|+++=-.+.+|.- -||-+.-...+.... +.....|.||+||+|||+.-|+..||+.+||++|.++.-.--|+..-+
T Consensus 977 IAMNRlGgKSNtGE-GGEdp~R~~~l~d~~-d~~rSAIKQVASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghK- 1053 (2142)
T KOG0399|consen 977 IAMNRLGGKSNTGE-GGEDPERSKPLADGV-DTMRSAIKQVASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHK- 1053 (2142)
T ss_pred HHHHhhcCcCCCCC-CCCChhhcccccccc-hHHHHHHHHHhccccccchhhccCchhhhhHHhcCCCCCCCCCCCcch-
Confidence 56666555665543 477777665555543 236788999999999999999999999999999988764433332110
Q ss_pred ccCcccccccCeeEEeecCCCCCCCCCCCCCCC----chHHHHHH
Q psy12798 92 GVTSSYLAHADDLQIKMAQGAKPGEGGELPGYK----VTKDIAST 132 (170)
Q Consensus 92 g~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~K----vt~eIA~~ 132 (170)
|+. ++. .-.-.+||.|=+-|+-. --+++|++
T Consensus 1054 -Vs~-dIA--------~tR~St~gVgLISPPPHHDIYSIEDLaQL 1088 (2142)
T KOG0399|consen 1054 -VSA-DIA--------KTRHSTAGVGLISPPPHHDIYSIEDLAQL 1088 (2142)
T ss_pred -hhH-HHH--------HhccCCCCCCcCCCCCccccccHHHHHHH
Confidence 000 111 11346788887777633 23555554
No 10
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=89.37 E-value=1.4 Score=38.82 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCCCc-CCHHHHHHHHHHHHhhCCCCccCCCC
Q psy12798 1 MSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGG 31 (170)
Q Consensus 1 MSyGA-LS~~A~~ALa~ga~~~Gt~~nTGEGg 31 (170)
|+.|+ ++.+...+|+++++.+|+++.+|..+
T Consensus 61 MtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~ 92 (333)
T TIGR02151 61 MTGGSEEAGKINRNLARAARELGIPMGVGSQR 92 (333)
T ss_pred CCCCchhHHHHHHHHHHHHHHcCCCeEEcCch
Confidence 77774 67778899999999999999999987
No 11
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=79.00 E-value=0.33 Score=45.67 Aligned_cols=26 Identities=46% Similarity=0.765 Sum_probs=20.8
Q ss_pred cccccccccchhhhhhhhhhHHHHhh
Q psy12798 57 FGVTSSYLAHADDLQIKMADENQRSA 82 (170)
Q Consensus 57 fG~r~~~~~~~~~~~~~~~~~~~~~~ 82 (170)
|||+++|++.++.++||+.|.++.-.
T Consensus 225 FGV~~~yL~~a~~ieIKiaQGAKPGe 250 (485)
T COG0069 225 FGVTPEYLANADAIEIKIAQGAKPGE 250 (485)
T ss_pred CccCHHHhCccceEEEEeccCCCCCC
Confidence 04788889999999999999887633
No 12
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=73.92 E-value=5.1 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.155 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Q psy12798 143 YPKFQDYTVVKELFSLILAVSRI 165 (170)
Q Consensus 143 P~~h~~~~s~~dl~~~I~~Lr~~ 165 (170)
|.+-.++.|+|||.+.+..||+-
T Consensus 5 P~~P~~~aspeel~~Y~~~L~~Y 27 (36)
T PF00159_consen 5 PERPGDFASPEELAQYYAALRHY 27 (36)
T ss_dssp SSSSSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 44557889999999999999973
No 13
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=58.67 E-value=1.7 Score=39.62 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=4.1
Q ss_pred ccCCCCCCcccc
Q psy12798 26 NTGEGGENPERY 37 (170)
Q Consensus 26 nTGEGg~~pe~~ 37 (170)
+||-=|+.++.+
T Consensus 121 ~sg~fGv~~~~l 132 (368)
T PF01645_consen 121 ASGRFGVRPEYL 132 (368)
T ss_dssp -TT-TT--HHHH
T ss_pred CCCCCCCCHHHh
Confidence 344445566554
No 14
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=57.19 E-value=12 Score=32.37 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=37.3
Q ss_pred CCCCcC-CHHHHHHHHHHHHhhCCCCccC-CCCCCccccccCCCCcCCCcEEEe
Q psy12798 1 MSFGSI-SIEAHTTLAKAMNKIGAKSNTG-EGGENPERYLSSGDENQRSAIKQV 52 (170)
Q Consensus 1 MSyGAL-S~~A~~ALa~ga~~~Gt~~nTG-EGg~~pe~~~~~~~~~~~~~I~Qi 52 (170)
|+++++ +.++..+|++++...|..++.| ++..+++++.... ..-+.+|+
T Consensus 72 m~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~---~~~~~~ql 122 (299)
T cd02809 72 TGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAA---PGPRWFQL 122 (299)
T ss_pred ccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhc---CCCeEEEE
Confidence 677777 8899999999999999998744 4777887765321 25677886
No 15
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=51.87 E-value=2.6 Score=44.57 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=7.4
Q ss_pred hhhhhhhhhhHHHH
Q psy12798 67 ADDLQIKMADENQR 80 (170)
Q Consensus 67 ~~~~~~~~~~~~~~ 80 (170)
++..+||++|.++.
T Consensus 928 a~~ieIKi~QGAKP 941 (1485)
T PRK11750 928 AEVLQIKVAQGAKP 941 (1485)
T ss_pred CCEEEEEecCCCCC
Confidence 34555666655543
No 16
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=51.15 E-value=26 Score=21.94 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=18.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Q psy12798 143 YPKFQDYTVVKELFSLILAVSRI 165 (170)
Q Consensus 143 P~~h~~~~s~~dl~~~I~~Lr~~ 165 (170)
|.+-.++.++|+|.+....||+-
T Consensus 5 P~~Pg~~a~~eel~~Y~~~L~~Y 27 (36)
T cd00126 5 PENPGDDASPEELRQYLAALREY 27 (36)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 44456788999999999999973
No 17
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=47.13 E-value=33 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Q psy12798 143 YPKFQDYTVVKELFSLILAVSRI 165 (170)
Q Consensus 143 P~~h~~~~s~~dl~~~I~~Lr~~ 165 (170)
|-+--+..++|||.++...||+-
T Consensus 5 P~~Pg~~a~~e~l~~Y~~~L~~Y 27 (36)
T smart00309 5 PERPGDDASPEDLRQYLAALREY 27 (36)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 44556789999999999999973
No 18
>KOG1766|consensus
Probab=35.72 E-value=40 Score=25.70 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=19.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhh
Q psy12798 143 YPKFQDYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 143 P~~h~~~~s~~dl~~~I~~Lr~~~ 166 (170)
|+.-+--|++.+|.+||+.|..++
T Consensus 45 Ps~~~ITYDIsqlfeFiD~L~DlS 68 (104)
T KOG1766|consen 45 PSAPPITYDISQLFEFIDDLADLS 68 (104)
T ss_pred CCCCCcceeHHHHHHHHHHHhhhh
Confidence 455556699999999999998875
No 19
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=29.86 E-value=91 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCC-------CCC-CCCCCCC----CCCHHHH--HHHHHHHHHh
Q psy12798 127 KDIASTRHSVPG-------AFQ-CYPKFQD----YTVVKEL--FSLILAVSRI 165 (170)
Q Consensus 127 ~eIA~~Rg~~~g-------~~~-SP~~h~~----~~s~~dl--~~~I~~Lr~~ 165 (170)
.|+|+..||.+- ..+ .|.+.++ +|+.+|+ ..+|..||++
T Consensus 4 gE~A~~~gvs~~TLRyYE~~GLl~p~r~~~~gyR~Y~~~~~~~l~~I~~lr~~ 56 (133)
T cd04787 4 KELANAAGVTPDTVRFYTRIGLLRPTRDPVNGYRLYSEKDLSRLRFILSARQL 56 (133)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeeCCHHHHHHHHHHHHHHHc
Confidence 477888887743 456 6666654 8899987 6788888874
No 20
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=27.18 E-value=32 Score=22.67 Aligned_cols=36 Identities=6% Similarity=0.089 Sum_probs=30.1
Q ss_pred CCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q psy12798 123 YKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLI 159 (170)
Q Consensus 123 ~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I 159 (170)
++|-..+++..+|++ .++ ||.|.+.+..+..+..++
T Consensus 3 ~~I~~~Va~~~~i~~-~~i~s~~R~~~~~~aR~iamyl 39 (60)
T smart00760 3 EEIIEAVAEYFGVKP-EDLKSKSRKREIVLARQIAMYL 39 (60)
T ss_pred HHHHHHHHHHhCCCH-HHHhcCCCCcchhHHHHHHHHH
Confidence 356788999999997 567 999999999999887765
No 21
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=25.57 E-value=90 Score=24.94 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=19.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhh
Q psy12798 142 CYPKFQDYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 142 SP~~h~~~~s~~dl~~~I~~Lr~~~ 166 (170)
.+..+.+|+|++||.++.+.++.+.
T Consensus 171 ~~~~~~dinT~eDl~~~~~~~~~~~ 195 (196)
T PRK00560 171 DEEEFLNLNTLKDYELALQILKSRA 195 (196)
T ss_pred CCccccCCCCHHHHHHHHHHHHHhc
Confidence 4456789999999988877776543
No 22
>KOG3349|consensus
Probab=24.39 E-value=39 Score=27.90 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=15.0
Q ss_pred CCcEEEecccccccccc
Q psy12798 46 RSAIKQVASGRFGVTSS 62 (170)
Q Consensus 46 ~~~I~Qigsg~fG~r~~ 62 (170)
-++|.|||+|++.|-|.
T Consensus 37 ~kLiiQ~Grg~~~~~d~ 53 (170)
T KOG3349|consen 37 TKLIIQIGRGQPFFGDP 53 (170)
T ss_pred cEEEEEecCCccCCCCH
Confidence 67999999999988875
No 23
>PTZ00405 cytochrome c; Provisional
Probab=24.10 E-value=95 Score=23.45 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh
Q psy12798 145 KFQDYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 145 ~h~~~~s~~dl~~~I~~Lr~~~ 166 (170)
.+..+.+++|..++|..|+.+.
T Consensus 92 ~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 92 SFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred CCCCCCCHHHHHHHHHHHHHhc
Confidence 4667899999999999999875
No 24
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=24.08 E-value=75 Score=27.58 Aligned_cols=41 Identities=17% Similarity=0.002 Sum_probs=32.3
Q ss_pred CCCchHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhC
Q psy12798 122 GYKVTKDIASTRHSVPGAFQCYPKFQDYTVVKELFSLILAVSRILS 167 (170)
Q Consensus 122 ~~Kvt~eIA~~Rg~~~g~~~SP~~h~~~~s~~dl~~~I~~Lr~~~~ 167 (170)
..||-++|..+++-.+ .|+ | =||++|=||--|+..||.-|+
T Consensus 102 SAKvm~~ikavLgaTK-iDL-P---VDINDPYDlGLLLRhLRHHSN 142 (238)
T PF02084_consen 102 SAKVMEDIKAVLGATK-IDL-P---VDINDPYDLGLLLRHLRHHSN 142 (238)
T ss_pred cHHHHHHHHHHhcccc-ccc-c---cccCChhhHHHHHHHHHHHHH
Confidence 5788899999998654 333 2 379999999999999998654
No 25
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=22.50 E-value=1.1e+02 Score=18.83 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=14.1
Q ss_pred CcCCHHHHHHHHHHHHhhCCCCc
Q psy12798 4 GSISIEAHTTLAKAMNKIGAKSN 26 (170)
Q Consensus 4 GALS~~A~~ALa~ga~~~Gt~~n 26 (170)
|++|+|.+.-|..+.--+..+.|
T Consensus 7 gsiseetkqklk~~ils~qsaan 29 (35)
T PF09047_consen 7 GSISEETKQKLKSAILSAQSAAN 29 (35)
T ss_dssp S---HHHHHHHHHHHHTT-STT-
T ss_pred CcccHHHHHHHHHHHhhhHhhhh
Confidence 79999999999888766555444
No 26
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=22.35 E-value=75 Score=28.24 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q psy12798 146 FQDYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 146 h~~~~s~~dl~~~I~~Lr~~~ 166 (170)
-||+.|+++...|+++||++.
T Consensus 155 ePd~~s~~EA~~~~~~L~~il 175 (289)
T PF02934_consen 155 EPDIRSPEEAAAFLKKLRRIL 175 (289)
T ss_dssp -TTB-SHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999874
No 27
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=21.45 E-value=91 Score=21.97 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy12798 148 DYTVVKELFSLILAVSRI 165 (170)
Q Consensus 148 ~~~s~~dl~~~I~~Lr~~ 165 (170)
.+.|+.|+.++|.+||.-
T Consensus 50 ~l~s~rdI~~LI~eLr~e 67 (69)
T PF07865_consen 50 ALNSSRDIVRLIAELRAE 67 (69)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 379999999999999974
No 28
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=20.64 E-value=1e+02 Score=18.23 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy12798 148 DYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 148 ~~~s~~dl~~~I~~Lr~~~ 166 (170)
.++++++|.+|-++|+++-
T Consensus 2 ~is~~d~f~eFY~rlk~Ik 20 (28)
T PF12108_consen 2 AISGGDPFSEFYERLKEIK 20 (28)
T ss_dssp ---S--HHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHH
Confidence 3567889999999998863
Done!