Query psy12798
Match_columns 170
No_of_seqs 116 out of 813
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:53:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ofd_A Ferredoxin-dependent gl 100.0 1.2E-29 4E-34 253.5 12.9 134 1-168 875-1028(1520)
2 1ea0_A Glutamate synthase [NAD 100.0 1.7E-29 5.7E-34 251.9 13.4 134 1-168 858-993 (1479)
3 3sr7_A Isopentenyl-diphosphate 95.7 0.006 2.1E-07 53.5 3.5 36 1-36 94-130 (365)
4 3vkj_A Isopentenyl-diphosphate 78.6 1.6 5.4E-05 38.0 3.7 31 1-31 67-98 (368)
5 1k8v_A Neuropeptide F; moniezi 77.1 2.3 7.9E-05 26.4 3.1 28 137-164 1-29 (40)
6 1gox_A (S)-2-hydroxy-acid oxid 60.8 6 0.00021 33.9 3.4 49 1-52 79-129 (370)
7 1vcf_A Isopentenyl-diphosphate 43.0 8.1 0.00028 32.3 1.3 35 1-35 66-101 (332)
8 2l60_A Peptide YY; GPCR ligand 42.4 20 0.00069 22.2 2.7 19 147-165 13-31 (41)
9 1kbi_A Cytochrome B2, L-LCR; f 37.1 16 0.00053 33.0 2.2 52 1-52 197-253 (511)
10 1f8p_A Neuropeptide Y (PNPY); 36.8 23 0.00078 21.5 2.2 23 143-165 5-27 (37)
11 2nzl_A Hydroxyacid oxidase 1; 29.8 21 0.00072 31.0 1.8 50 1-52 102-153 (392)
12 1i54_A Cytochrome C; zinc-porp 24.7 70 0.0024 21.0 3.4 21 146-166 82-102 (103)
13 1p0k_A Isopentenyl-diphosphate 23.0 54 0.0019 27.3 3.1 28 6-33 70-97 (349)
14 1c6r_A Cytochrome C6; electron 22.0 86 0.0029 19.8 3.3 23 146-168 64-86 (89)
15 2rhq_A Phenylalanyl-tRNA synth 20.9 1E+02 0.0035 25.4 4.3 54 110-166 12-66 (294)
No 1
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.96 E-value=1.2e-29 Score=253.46 Aligned_cols=134 Identities=54% Similarity=0.807 Sum_probs=115.1
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCcccccc-------------------CCCCcCCCcEEEeccccccccc
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLS-------------------SGDENQRSAIKQVASGRFGVTS 61 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~-------------------~~~~~~~~~I~Qigsg~fG~r~ 61 (170)
|||||+|++++++||.||+.+|+.+||||||++|+++.. .+.....+.|+|+++|+|||+
T Consensus 875 MS~GslS~ea~~aLA~Aas~aGg~~~tGeGg~~pe~~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~sg~FGVn- 953 (1520)
T 1ofd_A 875 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVT- 953 (1520)
T ss_dssp BCTTTSCHHHHHHHHHHHHHHTCBCEECTTCCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECTTCTTCC-
T ss_pred cCcccccHHHHHHHHHHHHHcCCceEeCCCCCCHHHHHhhhccccccccccccccccccCcchHHHHHHHhcCCCCccC-
Confidence 999999999999999999999999999999999988631 000012346666655555555
Q ss_pred ccccchhhhhhhhhhHHHHhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC
Q psy12798 62 SYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ 141 (170)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~ 141 (170)
.+++.++++||||++||||||.||+||+.||+++||++|++++|+++
T Consensus 954 ---------------------------------~~~l~~ad~IeIKi~QGAKpG~GG~Lp~~kV~~~iA~~R~~~~Gv~l 1000 (1520)
T 1ofd_A 954 ---------------------------------PEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTL 1000 (1520)
T ss_dssp ---------------------------------HHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCE
T ss_pred ---------------------------------hhhccchHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHcCCCCCCCe
Confidence 44566799999999999999999999999999999999999999999
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHhhCC
Q psy12798 142 -CYPKFQDYTVVKELFSLILAVSRILSS 168 (170)
Q Consensus 142 -SP~~h~~~~s~~dl~~~I~~Lr~~~~~ 168 (170)
||++|++|++++|+.++|++||+.+..
T Consensus 1001 isP~~~~d~~s~edl~~~I~~Lk~~~~~ 1028 (1520)
T 1ofd_A 1001 ISPPPHHDIYSIEDLAQLIYDLHQINPE 1028 (1520)
T ss_dssp ECCSSCTTCSSHHHHHHHHHHHHHHCTT
T ss_pred eCCCCCcCcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998743
No 2
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.96 E-value=1.7e-29 Score=251.92 Aligned_cols=134 Identities=54% Similarity=0.855 Sum_probs=117.7
Q ss_pred CCCCcCCHHHHHHHHHHHHhhCCCCccCCCCCCcccccc-CCCCcCCCcEEEecccccccccccccchhhhhhhhhhHHH
Q psy12798 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLS-SGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMADENQ 79 (170)
Q Consensus 1 MSyGALS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~~~~-~~~~~~~~~I~Qigsg~fG~r~~~~~~~~~~~~~~~~~~~ 79 (170)
||||++|++++++||.||+.+|+++||||||++|+++.. .+.....+.|+|+++++|||+.
T Consensus 858 MS~GalS~ea~~aLA~Aa~~aGg~~~tGeGg~~pe~~~~~~~g~~~~~~IrQ~asg~FGVn~------------------ 919 (1479)
T 1ea0_A 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQVASGRFGVTA------------------ 919 (1479)
T ss_dssp CCBTTBCHHHHHHHHHHHHHTTCEEECCTTCCCGGGSSBCTTSCBCCCSEEEECSSCTTCCH------------------
T ss_pred ccccccCHHHHHHHHHHHHHcCCeeEcCCCccCHHHhhhccccchhhhhhhhhcCCCCCcCh------------------
Confidence 999999999999999999999999999999999987631 1111235578887666666654
Q ss_pred HhhhhhhhcCCcccCcccccccCeeEEeecCCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHH
Q psy12798 80 RSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSL 158 (170)
Q Consensus 80 ~~~~~q~a~grfg~~~~~l~~a~~iEIKlgQGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~ 158 (170)
+++.++++||||++||||||.||+||+.||+++||++|++++|+++ ||++|++|++++|+.++
T Consensus 920 ----------------~~l~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lisP~~~~d~~s~edl~~~ 983 (1479)
T 1ea0_A 920 ----------------EYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQL 983 (1479)
T ss_dssp ----------------HHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHH
T ss_pred ----------------HHccccchHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccCCCCCcCcCCHHHHHHH
Confidence 4477899999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHhhCC
Q psy12798 159 ILAVSRILSS 168 (170)
Q Consensus 159 I~~Lr~~~~~ 168 (170)
|++||+.+..
T Consensus 984 I~~Lk~~~~~ 993 (1479)
T 1ea0_A 984 IYDLKQINPD 993 (1479)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9999998744
No 3
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=95.72 E-value=0.006 Score=53.49 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCCCcC-CHHHHHHHHHHHHhhCCCCccCCCCCCccc
Q psy12798 1 MSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGGENPER 36 (170)
Q Consensus 1 MSyGAL-S~~A~~ALa~ga~~~Gt~~nTGEGg~~pe~ 36 (170)
|++|++ +++..++||++|+..|+++++||+....++
T Consensus 94 Mtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~ 130 (365)
T 3sr7_A 94 MTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKN 130 (365)
T ss_dssp C----CCCHHHHHHHHHHHHHHTCCEEC---------
T ss_pred ccCCCcchhHHHHHHHHHHHHcCCCeecccccccccC
Confidence 888955 999999999999999999999999987665
No 4
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=78.55 E-value=1.6 Score=37.97 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCCCcC-CHHHHHHHHHHHHhhCCCCccCCCC
Q psy12798 1 MSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGG 31 (170)
Q Consensus 1 MSyGAL-S~~A~~ALa~ga~~~Gt~~nTGEGg 31 (170)
|+.|+. ..+...+|+++|+..|.++.+||.-
T Consensus 67 MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~ 98 (368)
T 3vkj_A 67 MTGGRNELGRINKIIAEVAEKFGIPMGVGSQR 98 (368)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTCCEECCCCH
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCeeeecch
Confidence 666633 5577899999999999999999993
No 5
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=77.11 E-value=2.3 Score=26.41 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=24.3
Q ss_pred CCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q psy12798 137 PGAFQ-CYPKFQDYTVVKELFSLILAVSR 164 (170)
Q Consensus 137 ~g~~~-SP~~h~~~~s~~dl~~~I~~Lr~ 164 (170)
|.+|. .|++-.-|+|+++|...+.+|-+
T Consensus 1 ~~~~~~~pp~p~~F~s~~~l~~YL~~Lne 29 (40)
T 1k8v_A 1 PDKDFIVNPSDLVLDNKAALRDYLRQINE 29 (40)
T ss_dssp CCCSCSSCSTTCSCSSCSHHHHHHHHHHH
T ss_pred CccccCCCCChhhcCCHHHHHHHHHHHHH
Confidence 45677 89999999999999999988865
No 6
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=60.78 E-value=6 Score=33.91 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCCCcC-CHHHHHHHHHHHHhhCCCCccCCCCCC-ccccccCCCCcCCCcEEEe
Q psy12798 1 MSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGGEN-PERYLSSGDENQRSAIKQV 52 (170)
Q Consensus 1 MSyGAL-S~~A~~ALa~ga~~~Gt~~nTGEGg~~-pe~~~~~~~~~~~~~I~Qi 52 (170)
|+|+.| ++++..+++++|...|+.+++|+.... .++..... .....+|+
T Consensus 79 mg~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~---~~~~~~QL 129 (370)
T 1gox_A 79 TAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG---PGIRFFQL 129 (370)
T ss_dssp CSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTC---CCCEEEEE
T ss_pred cchhhhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhc---CCCceEEE
Confidence 778877 799999999999999999999987755 34433211 25678886
No 7
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=42.98 E-value=8.1 Score=32.32 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=26.4
Q ss_pred CCCCc-CCHHHHHHHHHHHHhhCCCCccCCCCCCcc
Q psy12798 1 MSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGENPE 35 (170)
Q Consensus 1 MSyGA-LS~~A~~ALa~ga~~~Gt~~nTGEGg~~pe 35 (170)
|++|+ ..+++..+|+++|...|+.+++||.....+
T Consensus 66 m~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~le 101 (332)
T 1vcf_A 66 MTGGEENGERINLALAEAAEALGVGMMLGSGRILLE 101 (332)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHH
T ss_pred cccCCcchhHHHHHHHHHHHHcCCCEEeCCchhccc
Confidence 77774 446678999999999999999999876533
No 8
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=42.44 E-value=20 Score=22.23 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy12798 147 QDYTVVKELFSLILAVSRI 165 (170)
Q Consensus 147 ~~~~s~~dl~~~I~~Lr~~ 165 (170)
-+..+||||.++...||+-
T Consensus 13 g~~aspEela~Y~~~Lr~Y 31 (41)
T 2l60_A 13 LKKLSPEELNRYYASLRHY 31 (41)
T ss_dssp HTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999973
No 9
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=37.11 E-value=16 Score=33.01 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=36.1
Q ss_pred CCCCcCCH--HHHHHHHHHHHh--hCCCCccCCCCCCc-cccccCCCCcCCCcEEEe
Q psy12798 1 MSFGSISI--EAHTTLAKAMNK--IGAKSNTGEGGENP-ERYLSSGDENQRSAIKQV 52 (170)
Q Consensus 1 MSyGALS~--~A~~ALa~ga~~--~Gt~~nTGEGg~~p-e~~~~~~~~~~~~~I~Qi 52 (170)
|+++.|+. ++.++++++|.. .|+.+++.|....+ ++.....+.......+|+
T Consensus 197 ma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QL 253 (511)
T 1kbi_A 197 TALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQL 253 (511)
T ss_dssp CSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEE
T ss_pred chhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEE
Confidence 77887773 688899999999 99999998884443 433221101125688997
No 10
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=36.82 E-value=23 Score=21.51 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=18.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Q psy12798 143 YPKFQDYTVVKELFSLILAVSRI 165 (170)
Q Consensus 143 P~~h~~~~s~~dl~~~I~~Lr~~ 165 (170)
|..--+..++|||.++...||+-
T Consensus 5 P~~Pg~~a~pEela~Y~~~Lr~Y 27 (37)
T 1f8p_A 5 PDNPGEDAPAEDLARYYSALRHY 27 (37)
T ss_dssp CCCCCSSCTTTTHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 34445678999999999999974
No 11
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=29.79 E-value=21 Score=31.00 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=37.2
Q ss_pred CCCCcCC-HHHHHHHHHHHHhhCCCCccCCCC-CCccccccCCCCcCCCcEEEe
Q psy12798 1 MSFGSIS-IEAHTTLAKAMNKIGAKSNTGEGG-ENPERYLSSGDENQRSAIKQV 52 (170)
Q Consensus 1 MSyGALS-~~A~~ALa~ga~~~Gt~~nTGEGg-~~pe~~~~~~~~~~~~~I~Qi 52 (170)
|+|..|+ ++...+++++|...|+.++.++.. .+.|+..... ..+.+.+|+
T Consensus 102 mg~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~--~~~~~~~QL 153 (392)
T 2nzl_A 102 TAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAG--PEALRWLQL 153 (392)
T ss_dssp CSCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHC--TTSEEEEEE
T ss_pred ccccccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhc--CCCcEEEEE
Confidence 6777776 888899999999999999988877 4566654311 125678885
No 12
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=24.74 E-value=70 Score=20.99 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q psy12798 146 FQDYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 146 h~~~~s~~dl~~~I~~Lr~~~ 166 (170)
+..+.+.+|+.++|..|+.+.
T Consensus 82 ~~~l~~~~ei~~l~aYl~sl~ 102 (103)
T 1i54_A 82 FAGIKKKGERQDLVAYLKSAT 102 (103)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHHHHhc
Confidence 556778999999999999864
No 13
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=23.05 E-value=54 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCccCCCCCC
Q psy12798 6 ISIEAHTTLAKAMNKIGAKSNTGEGGEN 33 (170)
Q Consensus 6 LS~~A~~ALa~ga~~~Gt~~nTGEGg~~ 33 (170)
+++++..++++++...|+.+++|+....
T Consensus 70 ~~~~~~~~~a~aa~~~G~~~~~~~~~~~ 97 (349)
T 1p0k_A 70 LTYEINKSLARAASQAGIPLAVGSQMSA 97 (349)
T ss_dssp HHHHHHHHHHHHHHHHTCCEECCCCTTT
T ss_pred hhhHHHHHHHHHHHHcCCcEEeccchhc
Confidence 4456678999999999999999997654
No 14
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=22.01 E-value=86 Score=19.80 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCC
Q psy12798 146 FQDYTVVKELFSLILAVSRILSS 168 (170)
Q Consensus 146 h~~~~s~~dl~~~I~~Lr~~~~~ 168 (170)
+...-|.+|+.+++..|+.+...
T Consensus 64 ~~~~ls~~ei~~l~~yl~~~~~~ 86 (89)
T 1c6r_A 64 WSGTLDDDEIAAVAAYVYDQASG 86 (89)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHHHccC
Confidence 33456889999999988887643
No 15
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=20.86 E-value=1e+02 Score=25.36 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHhh
Q psy12798 110 QGAKPGEGGELPGYKVTKDIASTRHSVPGAFQ-CYPKFQDYTVVKELFSLILAVSRIL 166 (170)
Q Consensus 110 QGAKpG~GG~Lp~~Kvt~eIA~~Rg~~~g~~~-SP~~h~~~~s~~dl~~~I~~Lr~~~ 166 (170)
.|-.| .|.|++. .+-+|||++.|... .+. -|..-........+.++++++|+..
T Consensus 12 ~~~~~-~~~~~~~-DliEEv~R~~gyd~-i~~tlp~~~~~~g~~~~~~~~~~~iR~~l 66 (294)
T 2rhq_A 12 SGLVP-RGSHMGT-ELMEKLNQQLAEET-IDVTLPSRQISIGSKHPLTRTVEEIEDLF 66 (294)
T ss_dssp ---------------CTTHHHHHTTTTC-CCTTSCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred cCccc-CCCCCcc-hHHHHHHHHhCccc-CCccCCCcccCCCCCCHHHHHHHHHHHHH
Confidence 34445 5677666 58899999999644 444 4433223334445778888888764
Done!