RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12798
(170 letters)
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 163 bits (416), Expect = 7e-49
Identities = 74/138 (53%), Positives = 86/138 (62%), Gaps = 39/138 (28%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MSFG++S EAH LA+AMN+IG KSNTGEGGE+PERY
Sbjct: 174 MSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERY----------------------- 210
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
E+ RSAIKQVASGRFGVT YLA+AD ++IK+AQGAKPGEGG+L
Sbjct: 211 ----------------EDGRSAIKQVASGRFGVTPEYLANADAIEIKIAQGAKPGEGGQL 254
Query: 121 PGYKVTKDIASTRHSVPG 138
PG KVT +IA TR S PG
Sbjct: 255 PGEKVTPEIAKTRGSPPG 272
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate
synthase protein. This region is expressed as a separate
subunit in the glutamate synthase alpha subunit from
archaebacteria, or part of a large multidomain enzyme in
other organisms. The aligned region of these proteins
contains a putative FMN binding site and Fe-S cluster.
Length = 367
Score = 159 bits (403), Expect = 5e-48
Identities = 67/138 (48%), Positives = 80/138 (57%), Gaps = 38/138 (27%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MS+G++S EAH LAKAMN++G KSNTGEGGE+PER + D
Sbjct: 72 MSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAAD------------------ 113
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
AIKQVASGRFGVT YL +AD ++IK+AQGAKPGEGG L
Sbjct: 114 --------------------GAIKQVASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHL 153
Query: 121 PGYKVTKDIASTRHSVPG 138
PG KV+ +IA R S PG
Sbjct: 154 PGEKVSPEIARIRGSPPG 171
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 154 bits (391), Expect = 5e-46
Identities = 58/138 (42%), Positives = 65/138 (47%), Gaps = 39/138 (28%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MSFG++S EA LA G SNTGEGGE PE
Sbjct: 85 MSFGALSKEAKEALAIGAALAGTASNTGEGGELPEER----------------------- 121
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
E IKQVASGRFGV YL AD ++IK+ QGAKPGEGG L
Sbjct: 122 ----------------EGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHL 165
Query: 121 PGYKVTKDIASTRHSVPG 138
PG KVT++IA R PG
Sbjct: 166 PGEKVTEEIAKIRGIPPG 183
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 157 bits (400), Expect = 5e-45
Identities = 65/138 (47%), Positives = 80/138 (57%), Gaps = 38/138 (27%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MS G++S EAH LA AMN++G +SN+GEGGE+P RY +
Sbjct: 866 MSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGT--------------------- 904
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
+ S IKQVASGRFGVT +YL +A+ LQIK+AQGAKPGEGG+L
Sbjct: 905 -----------------EKVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQL 947
Query: 121 PGYKVTKDIASTRHSVPG 138
PG KV IA R+SVPG
Sbjct: 948 PGDKVNPLIARLRYSVPG 965
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 28.2 bits (63), Expect = 2.3
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 2 SFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTS 61
S G +S E L A+N++ E E+PE+ L S E+ S ++Q G+ G
Sbjct: 46 SVGVLSEEEQQKLELALNEL-----KLEVMEDPEQILLSDAEDIHSWVEQQLIGKVG--- 97
Query: 62 SYLAHADDLQIKMADENQRSAIKQVASGR----FGVTSSYLAHADDLQIKMAQGAKPGEG 117
DL K+ RS QVA+ L D LQ +M A+ +G
Sbjct: 98 -------DLGKKL--HTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQG 148
Query: 118 GELPGY 123
LPGY
Sbjct: 149 TVLPGY 154
>gnl|CDD|233322 TIGR01227, hutG, formimidoylglutamase. Formiminoglutamase, the
fourth enzyme of histidine degradation, is similar to
arginases and agmatinases. It is often encoded near
other enzymes of the histidine degredation pathway:
histidine ammonia-lyase, urocanate hydratase, and
imidazolonepropionase [Energy metabolism, Amino acids
and amines].
Length = 307
Score = 27.4 bits (61), Expect = 3.3
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 4 GSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSY 63
G I+ +AH L +A G S T P R + + + + RF T +
Sbjct: 142 GVINFDAHFDL-RATEDGGPTSGT------PFRQILDECQIEDFHYAVLGIRRFSNTQAL 194
Query: 64 LAHADDLQI 72
+A L +
Sbjct: 195 FDYAKKLGV 203
>gnl|CDD|235089 PRK02946, aceK, bifunctional isocitrate dehydrogenase
kinase/phosphatase protein; Validated.
Length = 575
Score = 27.5 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 63 YLAHADDLQIKMADENQRSAIKQVASG----------RFGVT 94
YL A D Q++ A E +AIKQ+A+ FGVT
Sbjct: 426 YLEQASDAQLRDAVEEYGNAIKQLAAANIFPGDMLFKNFGVT 467
>gnl|CDD|218985 pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase
(AceK). This family consists of several bacterial
isocitrate dehydrogenase kinase/phosphatase (AceK)
proteins (EC:2.7.1.116).
Length = 562
Score = 27.1 bits (61), Expect = 6.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 63 YLAHADDLQIKMADENQRSAIKQVASG----------RFGVT 94
YL A D Q++ A E +AIKQ+A+ FGVT
Sbjct: 419 YLEEASDEQLRAAIEEYGNAIKQLAAANIFPGDMLLKNFGVT 460
>gnl|CDD|215960 pfam00509, Hemagglutinin, Haemagglutinin. Hemagglutinin from
influenza virus causes membrane fusion of the viral
membrane with the host membrane. Fusion occurs after the
host cell internalises the virus by endocytosis. The
drop of pH causes release of a hydrophobic fusion
peptide and a large conformational change leading to
membrane fusion.
Length = 550
Score = 26.5 bits (59), Expect = 8.3
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 142 CYP-KFQDYTVVKELFSLILAVSRI 165
CYP DY ++ L S + RI
Sbjct: 88 CYPGDVNDYEELRSLLSSSRSYERI 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.128 0.352
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,199,016
Number of extensions: 711425
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 16
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)