RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12798
(170 letters)
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 227 bits (581), Expect = 1e-69
Identities = 69/138 (50%), Positives = 84/138 (60%), Gaps = 15/138 (10%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
MS G++S EAH TLA AMN++GAKSN+GEGGE+ RYL+ D + +
Sbjct: 875 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPH------ 928
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
L + D SAIKQ+ASGRFGVT YL L+IKMAQGAKPGEGG+L
Sbjct: 929 LHGLQNGD---------TANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 979
Query: 121 PGYKVTKDIASTRHSVPG 138
PG KV++ IA R S PG
Sbjct: 980 PGKKVSEYIAMLRRSKPG 997
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 221 bits (566), Expect = 1e-67
Identities = 69/140 (49%), Positives = 84/140 (60%), Gaps = 37/140 (26%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQVASGRFG 58
MS G++S EAH TL AMN+IGAKS++GEGGE+P R+ +GD
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGD---------------- 901
Query: 59 VTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGG 118
N SAIKQVASGRFGVT+ YL +L+IK+AQGAKPGEGG
Sbjct: 902 -------------------NWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGG 942
Query: 119 ELPGYKVTKDIASTRHSVPG 138
+LPG+KVT+ IA RHS PG
Sbjct: 943 QLPGFKVTEMIARLRHSTPG 962
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.043
Identities = 27/152 (17%), Positives = 42/152 (27%), Gaps = 59/152 (38%)
Query: 59 VTSSYLAHADDLQIKMADENQRSAIK---------QVASGRFGVTSSYLAHADDLQIKMA 109
VT+ +A D + + R AI A + S L + +
Sbjct: 278 VTAVAIAETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE------ 329
Query: 110 QGAKPGEGGELPGY----------KVTKDIASTRHSVPGAFQCY------PK-FQDYTVV 152
EG +P +V + T +P Q K VV
Sbjct: 330 ----NNEG--VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL----VV 379
Query: 153 ----KELFSLILAV-----------SRILSSK 169
+ L+ L L + SRI S+
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Score = 29.6 bits (66), Expect = 0.51
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 23/96 (23%)
Query: 4 GSISIEA-----HT---TLAKAMNKI-GAKSNTGEGGENPERYLSSGDENQRSAIKQVAS 54
+SIE+ T+ A+ + +SN G NP R +S + A++ V
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ---EALQYVVE 1831
Query: 55 GRFGVTSSYLAHADDLQIKMADENQRSAIKQ-VASG 89
R G + +L ++I + N +Q VA+G
Sbjct: 1832 -RVGKRTGWL-----VEI--VNYN--VENQQYVAAG 1857
Score = 28.1 bits (62), Expect = 1.6
Identities = 23/98 (23%), Positives = 29/98 (29%), Gaps = 34/98 (34%)
Query: 14 LAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFG-VT----SSYLAHAD 68
L + K A S G + R S +R K S RF V S L A
Sbjct: 389 LNLTLRKAKAPS-----GLDQSRIPFS----ER---KLKFSNRFLPVASPFHSHLLVPAS 436
Query: 69 DLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQI 106
DL I + +A D+QI
Sbjct: 437 DL-INKDLVKNNVSF----------------NAKDIQI 457
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 29.8 bits (67), Expect = 0.43
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
SS L+ + + EN + A GVT++ L ++Q+ +
Sbjct: 436 SSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLR---NIQLAQNNVNIAETNLPV 492
Query: 121 PGYKVTKDIASTRHSVP 137
+ +P
Sbjct: 493 HYDLNGPRKLFANYKLP 509
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 29.3 bits (66), Expect = 0.63
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 90 RFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKV 125
R GV + +LA ++ A + G+ K+
Sbjct: 326 RKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKI 361
>2rft_A Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} PDB: 2rfu_A* 3bt6_A*
Length = 344
Score = 28.2 bits (62), Expect = 1.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 142 CYPKFQDYTVVKELFSLILAVSRI 165
C+P D T +++L +L+ I
Sbjct: 94 CFPIMHDRTKIRQLPNLLRGYENI 117
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 25.8 bits (57), Expect = 8.8
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 31/132 (23%)
Query: 1 MSFGSISIEAHTTLAKAMNKIGAKSNTGEG-----------GENPERYLSSGDENQRSAI 49
F +I ++ LA +K G ++ G+ E E + E S +
Sbjct: 162 CYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKET-ERFVSEM 220
Query: 50 KQVASG--------RFGVTSS--------YLAHADDLQIKM-ADENQRSAIKQVASGRFG 92
Q RF ++ S +A DL I+ EN R ++ V + +
Sbjct: 221 LQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISEN-RDEVEAVKN-LYP 278
Query: 93 VTSSYLAHADDL 104
+Y + D
Sbjct: 279 SYKNYTSVYDKN 290
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 25.8 bits (57), Expect = 8.9
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 61 SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLA 99
SS H + + I + ++ GV +++L
Sbjct: 401 SSSKVHPNSVHICAVVVEYETKAGRI---NKGVATNWLR 436
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.352
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,418,492
Number of extensions: 135137
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 13
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)