RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12798
         (170 letters)



>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
           central and FMN domains {Synechocystis sp. [TaxId:
           1143]}
          Length = 809

 Score =  108 bits (272), Expect = 9e-29
 Identities = 76/160 (47%), Positives = 93/160 (58%), Gaps = 16/160 (10%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TLA AMN++GAKSN+GEGGE+  RYL+  D +                
Sbjct: 445 MSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSE------------GN 492

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
           S  L H   L      +   SAIKQ+ASGRFGVT  YL     L+IKMAQGAKPGEGG+L
Sbjct: 493 SPTLPHLHGL---QNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQL 549

Query: 121 PGYKVTKDIASTRHSVPGAFQC-YPKFQDYTVVKELFSLI 159
           PG KV++ IA  R S PG      P   D   +++L  LI
Sbjct: 550 PGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLI 589


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score =  100 bits (250), Expect = 1e-25
 Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 34/160 (21%)

Query: 1   MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVT 60
           MS G++S EAH TL  AMN+IGAKS++GEGGE+P R+    + +                
Sbjct: 436 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGD---------------- 479

Query: 61  SSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 120
                            N  SAIKQVASGRFGVT+ YL    +L+IK+AQGAKPGEGG+L
Sbjct: 480 -----------------NWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 522

Query: 121 PGYKVTKDIASTRHSVPGAFQC-YPKFQDYTVVKELFSLI 159
           PG+KVT+ IA  RHS PG      P   D   +++L  LI
Sbjct: 523 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLI 562


>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 279

 Score = 27.0 bits (59), Expect = 1.1
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 57  FGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAH 100
           + + SS   H + + I        +   +V     GV +S+L  
Sbjct: 217 YAIASSSKVHPNSVHICAVAVEYEAKSGRV---NKGVATSWLRA 257


>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase
           FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 270

 Score = 25.8 bits (56), Expect = 2.7
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 57  FGVTSSYLAHADDLQIKMADENQRSAIKQVASGRFGVTSSYLAHA 101
           + ++SS   + D++ + +A  +  +   +      GV SS+L   
Sbjct: 213 YSISSSPDMYPDEVHLTVAIVSYHTRDGEGPV-HHGVCSSWLNRI 256


>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
           4513]}
          Length = 500

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 9/36 (25%)

Query: 115 GEGGEL--PGYKVTKDIASTRHSVP--GAFQCYPKF 146
           G  GEL  P Y       S   S P  G F CY K+
Sbjct: 176 GPAGELRYPSYP-----QSHGWSFPGIGEFICYDKY 206


>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 323

 Score = 25.5 bits (56), Expect = 3.8
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 130 ASTRHSVPGAF--QCYP-KFQDYTVVKELFSLILAVSRI 165
            S     P +    CYP  F DY  ++E  S + +  R 
Sbjct: 76  WSYIVETPNSENGICYPGDFIDYEELREQLSSVSSFERF 114


>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
           [TaxId: 4120]}
          Length = 498

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 9/36 (25%)

Query: 115 GEGGEL--PGYKVTKDIASTRHSVP--GAFQCYPKF 146
           G  GEL  P Y       +     P  G FQCY K+
Sbjct: 183 GAAGELRYPSYP-----ETQGWVFPGIGEFQCYDKY 213


>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max)
           [TaxId: 3847]}
          Length = 490

 Score = 25.2 bits (55), Expect = 4.6
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 9/36 (25%)

Query: 115 GEGGEL--PGYKVTKDIASTRHSVP--GAFQCYPKF 146
           G  GEL  P Y       S     P  G FQCY K+
Sbjct: 177 GPAGELRYPSYP-----QSQGWEFPGIGEFQCYDKY 207


>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
           (Gallus gallus), mitochondria [TaxId: 9031]}
          Length = 401

 Score = 25.3 bits (54), Expect = 5.3
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 91  FGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIA 130
            GVT ++    +  ++ +  GA   + G+       +   
Sbjct: 16  LGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAE 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 553,802
Number of extensions: 22084
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 10
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.8 bits)