Query psy128
Match_columns 446
No_of_seqs 329 out of 1342
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:55:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10203 Pet191_N: Cytochrome 99.9 4.8E-22 1.1E-26 159.5 5.3 64 364-430 2-68 (68)
2 KOG4114|consensus 99.8 7.9E-22 1.7E-26 157.0 3.4 67 364-430 2-72 (73)
3 KOG1973|consensus 99.1 6.4E-11 1.4E-15 117.7 2.8 54 269-326 212-268 (274)
4 PF00628 PHD: PHD-finger; Int 98.9 2.9E-10 6.2E-15 84.9 -0.0 46 278-324 1-49 (51)
5 COG5034 TNG2 Chromatin remodel 98.8 2.5E-09 5.5E-14 104.8 2.8 51 271-325 216-269 (271)
6 smart00249 PHD PHD zinc finger 98.7 8.8E-09 1.9E-13 73.6 4.0 45 278-323 1-47 (47)
7 KOG0825|consensus 98.3 3.2E-07 6.9E-12 101.0 2.3 55 273-328 212-268 (1134)
8 KOG1244|consensus 98.1 1E-06 2.3E-11 87.5 1.6 47 277-324 282-329 (336)
9 KOG4323|consensus 97.8 7E-06 1.5E-10 87.0 2.0 50 276-327 171-225 (464)
10 KOG4299|consensus 97.7 1.3E-05 2.8E-10 87.1 2.4 49 277-326 254-305 (613)
11 KOG1844|consensus 97.7 4.5E-05 9.8E-10 81.1 6.5 59 274-334 84-143 (508)
12 KOG1512|consensus 97.7 1.3E-05 2.8E-10 80.3 2.0 46 278-325 316-362 (381)
13 KOG1632|consensus 97.1 0.00031 6.7E-09 72.6 3.2 51 278-329 62-116 (345)
14 KOG0955|consensus 97.0 0.00061 1.3E-08 78.7 4.2 128 275-418 218-366 (1051)
15 KOG1245|consensus 96.9 0.00019 4.2E-09 85.2 -0.5 52 276-328 1108-1160(1404)
16 KOG0383|consensus 96.9 0.00046 1E-08 76.9 2.4 51 274-328 45-96 (696)
17 PF13831 PHD_2: PHD-finger; PD 96.8 0.00021 4.6E-09 51.0 -1.1 34 291-324 3-36 (36)
18 KOG0957|consensus 96.7 0.0096 2.1E-07 64.1 10.3 49 276-325 544-597 (707)
19 KOG0954|consensus 96.4 0.0016 3.4E-08 72.4 1.8 51 275-326 270-321 (893)
20 cd04718 BAH_plant_2 BAH, or Br 95.9 0.0048 1E-07 57.0 2.4 30 301-330 1-31 (148)
21 PTZ00266 NIMA-related protein 95.7 0.089 1.9E-06 61.5 11.9 6 25-30 293-298 (1021)
22 PF07227 DUF1423: Protein of u 95.4 0.011 2.4E-07 62.9 3.2 51 276-326 128-192 (446)
23 KOG0957|consensus 95.2 0.012 2.7E-07 63.2 2.9 50 278-328 121-181 (707)
24 COG5141 PHD zinc finger-contai 95.2 0.0079 1.7E-07 64.6 1.4 50 277-327 194-244 (669)
25 KOG1632|consensus 95.2 0.0021 4.5E-08 66.6 -2.9 56 271-326 234-295 (345)
26 KOG0956|consensus 94.8 0.013 2.8E-07 65.1 1.6 48 278-326 7-57 (900)
27 KOG4364|consensus 94.8 0.18 4E-06 56.1 10.2 16 372-387 612-627 (811)
28 KOG4443|consensus 94.7 0.014 3E-07 64.5 1.7 47 278-325 70-117 (694)
29 KOG4364|consensus 92.8 0.82 1.8E-05 51.2 10.8 22 48-69 198-219 (811)
30 KOG0163|consensus 91.5 1.2 2.6E-05 50.8 10.2 6 298-303 1091-1096(1259)
31 KOG1029|consensus 91.2 2.3 4.9E-05 48.7 12.0 19 89-107 277-295 (1118)
32 KOG1144|consensus 91.0 0.38 8.2E-06 54.7 5.8 6 391-396 491-496 (1064)
33 KOG2891|consensus 90.2 2.5 5.5E-05 43.3 10.3 67 114-180 296-368 (445)
34 KOG3054|consensus 88.9 2.1 4.5E-05 43.1 8.4 15 98-112 81-95 (299)
35 PF05262 Borrelia_P83: Borreli 88.3 2 4.4E-05 46.8 8.6 23 84-106 156-179 (489)
36 PF15446 zf-PHD-like: PHD/FYVE 88.0 0.36 7.7E-06 45.8 2.4 47 279-326 2-60 (175)
37 KOG1029|consensus 87.1 2.4 5.3E-05 48.5 8.5 43 171-213 367-410 (1118)
38 PF07649 C1_3: C1-like domain; 86.9 0.26 5.7E-06 33.4 0.6 29 278-307 2-30 (30)
39 KOG1144|consensus 85.8 1.9 4.1E-05 49.4 6.9 11 371-381 488-498 (1064)
40 KOG2752|consensus 85.6 0.37 8E-06 49.6 1.2 32 276-308 128-165 (345)
41 PF07496 zf-CW: CW-type Zinc F 82.8 0.66 1.4E-05 35.2 1.3 32 291-323 2-35 (50)
42 PF14446 Prok-RING_1: Prokaryo 82.5 0.9 1.9E-05 35.6 1.9 32 276-309 5-38 (54)
43 KOG4443|consensus 81.2 0.32 6.9E-06 54.2 -1.4 49 276-324 145-200 (694)
44 KOG1473|consensus 81.0 0.93 2E-05 53.4 2.2 46 276-325 344-390 (1414)
45 KOG2626|consensus 76.6 3.1 6.6E-05 45.7 4.3 51 276-327 20-77 (544)
46 PF13832 zf-HC5HC2H_2: PHD-zin 75.7 1.7 3.6E-05 37.2 1.7 32 275-309 54-87 (110)
47 KOG2412|consensus 75.3 15 0.00033 40.6 9.1 25 144-168 201-225 (591)
48 PF13901 DUF4206: Domain of un 75.2 2.6 5.7E-05 40.6 3.1 40 277-325 153-197 (202)
49 KOG4661|consensus 75.2 19 0.00041 40.3 9.8 28 148-175 620-647 (940)
50 PF05262 Borrelia_P83: Borreli 72.4 20 0.00044 39.3 9.3 26 281-307 396-424 (489)
51 KOG1512|consensus 72.3 1.1 2.5E-05 45.8 -0.2 49 276-324 258-315 (381)
52 KOG2891|consensus 71.3 23 0.0005 36.6 8.8 18 181-198 357-374 (445)
53 KOG2689|consensus 68.1 27 0.0006 35.7 8.5 55 150-204 114-168 (290)
54 PF10367 Vps39_2: Vacuolar sor 66.2 3.9 8.4E-05 34.1 1.8 29 278-308 80-108 (109)
55 KOG1246|consensus 64.7 12 0.00026 43.6 6.0 53 273-327 152-205 (904)
56 PF15346 ARGLU: Arginine and g 64.2 74 0.0016 29.8 9.9 7 225-231 141-147 (149)
57 PRK00247 putative inner membra 62.5 1.4E+02 0.0029 32.6 12.9 16 104-119 273-288 (429)
58 KOG2412|consensus 61.1 22 0.00047 39.5 6.7 9 60-68 71-79 (591)
59 PF13771 zf-HC5HC2H: PHD-like 60.9 4.7 0.0001 33.1 1.3 33 276-311 36-70 (90)
60 KOG4299|consensus 60.7 8 0.00017 43.2 3.4 52 270-325 41-94 (613)
61 PF04216 FdhE: Protein involve 56.2 4.6 9.9E-05 40.6 0.6 30 275-304 171-209 (290)
62 KOG2002|consensus 53.4 23 0.0005 41.7 5.6 9 138-146 829-837 (1018)
63 KOG1829|consensus 51.6 4.6 9.9E-05 45.0 -0.2 43 276-325 511-558 (580)
64 PF13639 zf-RING_2: Ring finge 50.4 5 0.00011 28.9 -0.1 43 278-324 2-44 (44)
65 PF11793 FANCL_C: FANCL C-term 50.2 8.9 0.00019 31.0 1.3 48 278-325 4-63 (70)
66 PF03107 C1_2: C1 domain; Int 49.9 15 0.00032 24.9 2.2 29 278-307 2-30 (30)
67 PF12861 zf-Apc11: Anaphase-pr 48.4 8.6 0.00019 32.8 1.0 45 279-325 35-79 (85)
68 KOG3779|consensus 47.9 25 0.00055 38.4 4.5 55 11-65 470-531 (737)
69 KOG3277|consensus 46.2 9.2 0.0002 36.1 0.9 25 276-300 79-112 (165)
70 PF10497 zf-4CXXC_R1: Zinc-fin 45.8 16 0.00035 32.0 2.3 48 276-325 7-69 (105)
71 KOG2041|consensus 45.4 22 0.00049 40.9 3.8 48 276-326 1117-1165(1189)
72 KOG4661|consensus 44.3 2E+02 0.0043 32.8 10.6 9 6-14 426-434 (940)
73 PF00130 C1_1: Phorbol esters/ 44.0 21 0.00046 26.4 2.5 35 276-310 11-46 (53)
74 KOG3799|consensus 43.1 9.3 0.0002 35.4 0.4 51 278-328 67-118 (169)
75 PF05180 zf-DNL: DNL zinc fing 41.5 6.5 0.00014 32.0 -0.7 26 277-302 5-39 (66)
76 smart00109 C1 Protein kinase C 39.9 14 0.00031 26.2 0.9 34 276-309 11-44 (49)
77 KOG3119|consensus 37.7 3.4E+02 0.0073 27.4 10.6 61 122-187 181-244 (269)
78 COG1773 Rubredoxin [Energy pro 36.9 25 0.00053 27.8 1.8 41 277-325 4-44 (55)
79 cd00029 C1 Protein kinase C co 36.4 20 0.00044 25.7 1.3 34 276-309 11-45 (50)
80 PF02318 FYVE_2: FYVE-type zin 36.3 71 0.0015 28.0 4.9 46 278-325 56-102 (118)
81 PF11200 DUF2981: Protein of u 36.2 29 0.00063 34.6 2.6 40 1-41 56-100 (318)
82 PF12678 zf-rbx1: RING-H2 zinc 36.2 15 0.00033 29.7 0.6 43 279-324 22-73 (73)
83 PF09416 UPF1_Zn_bind: RNA hel 36.1 18 0.00039 33.9 1.2 24 279-304 3-26 (152)
84 KOG1705|consensus 36.0 16 0.00035 31.8 0.8 50 278-327 29-79 (110)
85 KOG4571|consensus 35.0 5.4E+02 0.012 26.8 13.7 40 18-58 120-159 (294)
86 PF12773 DZR: Double zinc ribb 34.3 35 0.00076 25.1 2.3 7 278-284 14-20 (50)
87 KOG3634|consensus 32.5 2.8E+02 0.006 29.4 9.1 23 407-430 313-335 (361)
88 PF06098 Radial_spoke_3: Radia 32.2 53 0.0012 33.8 3.9 38 76-113 121-158 (291)
89 COG5415 Predicted integral mem 31.9 26 0.00056 34.8 1.5 33 292-327 192-224 (251)
90 PRK14559 putative protein seri 31.5 38 0.00082 38.5 3.0 49 278-328 3-52 (645)
91 TIGR00311 aIF-2beta translatio 31.5 30 0.00064 31.7 1.8 26 276-301 97-127 (133)
92 PLN02436 cellulose synthase A 30.6 33 0.00072 41.0 2.4 48 277-327 37-88 (1094)
93 KOG1244|consensus 30.0 17 0.00037 37.3 -0.1 49 275-324 223-282 (336)
94 PLN02400 cellulose synthase 30.0 37 0.0008 40.7 2.6 48 278-328 38-89 (1085)
95 KOG4218|consensus 29.5 23 0.0005 37.5 0.8 49 277-325 16-75 (475)
96 PRK03988 translation initiatio 29.3 34 0.00074 31.4 1.8 27 276-302 102-133 (138)
97 KOG4628|consensus 28.2 39 0.00084 35.7 2.2 47 277-326 230-276 (348)
98 KOG3654|consensus 27.9 1.3E+02 0.0027 33.7 6.0 30 133-162 385-414 (708)
99 KOG1080|consensus 27.7 50 0.0011 39.4 3.1 50 276-325 573-623 (1005)
100 PF08746 zf-RING-like: RING-li 27.5 28 0.00061 25.7 0.7 41 279-323 1-43 (43)
101 PLN02638 cellulose synthase A 27.5 36 0.00078 40.7 2.0 47 278-327 19-69 (1079)
102 PRK03564 formate dehydrogenase 27.0 47 0.001 34.5 2.5 38 276-324 187-233 (309)
103 PF14569 zf-UDP: Zinc-binding 26.9 14 0.00031 31.1 -1.0 47 277-326 10-60 (80)
104 KOG3612|consensus 26.4 81 0.0018 35.2 4.2 51 271-325 55-107 (588)
105 PF11781 RRN7: RNA polymerase 26.3 35 0.00076 24.4 1.0 10 315-324 23-32 (36)
106 cd00162 RING RING-finger (Real 26.2 20 0.00044 24.2 -0.2 42 279-325 2-43 (45)
107 PF04747 DUF612: Protein of un 26.0 3.5E+02 0.0076 29.4 8.6 45 84-128 38-85 (510)
108 TIGR01562 FdhE formate dehydro 25.9 50 0.0011 34.2 2.5 38 276-324 184-231 (305)
109 PRK12704 phosphodiesterase; Pr 25.5 5.8E+02 0.013 28.3 10.7 13 299-311 250-262 (520)
110 KOG2879|consensus 25.3 40 0.00087 34.6 1.6 48 277-328 240-287 (298)
111 PF02029 Caldesmon: Caldesmon; 24.7 2E+02 0.0043 31.9 6.8 11 169-179 279-289 (492)
112 PLN02915 cellulose synthase A 24.7 47 0.001 39.7 2.2 48 277-327 16-67 (1044)
113 PF13341 RAG2_PHD: RAG2 PHD do 24.6 35 0.00076 28.4 0.9 34 291-324 29-69 (78)
114 COG1198 PriA Primosomal protei 24.6 52 0.0011 37.9 2.5 43 276-326 435-484 (730)
115 smart00653 eIF2B_5 domain pres 24.6 45 0.00098 29.5 1.6 25 276-300 80-109 (110)
116 TIGR03319 YmdA_YtgF conserved 23.8 6.6E+02 0.014 27.8 10.7 82 136-217 28-112 (514)
117 PF13922 PHD_3: PHD domain of 23.5 28 0.00062 28.5 0.2 28 277-310 34-61 (69)
118 PLN03086 PRLI-interacting fact 23.5 3.2E+02 0.0068 30.9 8.2 11 375-385 243-253 (567)
119 PRK12336 translation initiatio 22.5 51 0.0011 31.9 1.7 27 276-302 98-129 (201)
120 KOG1924|consensus 22.3 1.8E+02 0.0039 34.3 6.0 60 8-92 547-610 (1102)
121 PF06936 Selenoprotein_S: Sele 20.7 2.7E+02 0.0058 27.1 6.2 22 142-163 75-96 (190)
122 PLN02189 cellulose synthase 20.7 63 0.0014 38.6 2.2 47 278-327 36-86 (1040)
123 KOG0345|consensus 20.7 3.7E+02 0.0081 30.0 7.8 30 12-41 316-348 (567)
124 KOG3654|consensus 20.4 4.4E+02 0.0096 29.6 8.3 24 66-90 320-343 (708)
125 PF00301 Rubredoxin: Rubredoxi 20.2 73 0.0016 24.2 1.8 13 314-326 31-43 (47)
No 1
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=99.85 E-value=4.8e-22 Score=159.50 Aligned_cols=64 Identities=44% Similarity=1.021 Sum_probs=60.3
Q ss_pred cchhhhhHHhHHHHhhhccccccCCCChhhhhcCC---ChhhHHHHHhHHHhccccCcccccccccccCC
Q psy128 364 KSACAGSRADLKLCLLETDCVQVDRKTPRQCLREG---LAPQCEALKNTFFECKRSLLDTRQTVCRWIGK 430 (446)
Q Consensus 364 ~~SC~~iredLa~CLleSdC~~~~~~t~keCL~~~---lp~eC~~l~~~f~eCKR~llD~r~Rfrr~rGn 430 (446)
++||++++++|+.||++||||+++++||+|||+++ ||.+|++|+++||+|||||||||+ |||||
T Consensus 2 ~~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~~~~~p~eC~~lr~~f~eCKrg~lDmr~---RfRGn 68 (68)
T PF10203_consen 2 SKSCKGIREALAECLQESDCVKKEKRTPKDCLKDPSDELPEECQQLRKAFFECKRGMLDMRK---RFRGN 68 (68)
T ss_pred CchHHHHHHHHHHHHhhChhhccCCCCHHHHHcCCCCcCCHHHHHHHHHHHHHhcccccccc---cccCc
Confidence 57999999999999999999999999999999987 899999999999999999999999 55555
No 2
>KOG4114|consensus
Probab=99.84 E-value=7.9e-22 Score=156.97 Aligned_cols=67 Identities=43% Similarity=0.886 Sum_probs=63.1
Q ss_pred cchhhhhHHhHHHHhhhccccccCCCChhhhhcCC----ChhhHHHHHhHHHhccccCcccccccccccCC
Q psy128 364 KSACAGSRADLKLCLLETDCVQVDRKTPRQCLREG----LAPQCEALKNTFFECKRSLLDTRQTVCRWIGK 430 (446)
Q Consensus 364 ~~SC~~iredLa~CLleSdC~~~~~~t~keCL~~~----lp~eC~~l~~~f~eCKR~llD~r~Rfrr~rGn 430 (446)
+.||.+++++|+.||++|||+++++++|++||+++ ||.+|++|+.+|++|||+|||||+|||+.+|.
T Consensus 2 g~sC~~~r~alk~Cl~~S~Cv~v~~ks~reCldn~~~~~vPeeC~al~~af~dCKRslvDmrkRfrgrkg~ 72 (73)
T KOG4114|consen 2 GASCKDQRKALKICLLRSDCVMVERKSPRECLDNPELKDVPEECIALMKAFLDCKRSLVDMRKRFRGRKGT 72 (73)
T ss_pred cccHHHHHHHHHHHHhcCcceeeecCCHHHHhcCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 57999999999999999999999999999999974 89999999999999999999999988887763
No 3
>KOG1973|consensus
Probab=99.05 E-value=6.4e-11 Score=117.73 Aligned_cols=54 Identities=37% Similarity=1.067 Sum_probs=45.5
Q ss_pred CCCCCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCCc
Q psy128 269 DTGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 269 eeed~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...++++..|| +|....+|. ||.||+ |. .|||+.|||+... +.+.|||+.|...
T Consensus 212 ~~~d~~e~~yC-~Cnqvsyg~--Mi~CDn~~C~~eWFH~~CVGL~~~-PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 212 EAVDPDEPTYC-ICNQVSYGK--MIGCDNPGCPIEWFHFTCVGLKTK-PKGKWYCPRCKAE 268 (274)
T ss_pred cccCCCCCEEE-Eeccccccc--ccccCCCCCCcceEEEeccccccC-CCCcccchhhhhh
Confidence 34556678899 999877777 999998 99 9999999999966 5568999999854
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.88 E-value=2.9e-10 Score=84.94 Aligned_cols=46 Identities=48% Similarity=1.284 Sum_probs=39.2
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC---CCCCcEEcCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCS 324 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~---~~~~~w~Cp~C~ 324 (446)
+|.+|+..++++ .||+||.|+.|||..|++++.. .....|+|+.|.
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 588999966666 8999999999999999999987 223489999986
No 5
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.78 E-value=2.5e-09 Score=104.77 Aligned_cols=51 Identities=35% Similarity=1.025 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCC
Q psy128 271 GDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 271 ed~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
.+.++..|| .|++..+|. ||.||+ |. .|||+.|||+... +.+.|||+.|..
T Consensus 216 ~se~e~lYC-fCqqvSyGq--MVaCDn~nCkrEWFH~~CVGLk~p-PKG~WYC~eCk~ 269 (271)
T COG5034 216 NSEGEELYC-FCQQVSYGQ--MVACDNANCKREWFHLECVGLKEP-PKGKWYCPECKK 269 (271)
T ss_pred cccCceeEE-Eeccccccc--ceecCCCCCchhheeccccccCCC-CCCcEeCHHhHh
Confidence 334567899 999999998 999997 88 9999999999765 668999999973
No 6
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825|consensus
Probab=98.27 E-value=3.2e-07 Score=100.98 Aligned_cols=55 Identities=27% Similarity=0.728 Sum_probs=47.4
Q ss_pred CCCcccccccccCCCCCCCeeecCCCCCc-ccccccccCCC-CCCCcEEcCCCCCccc
Q psy128 273 SKQVWICPACGVQDDGSLPMIGCDGCDAW-YHWVCVGLVAE-PETSDWFCPKCSKVDE 328 (446)
Q Consensus 273 ~~~~~~C~VCg~pdd~~~~mIqCD~C~~W-fH~~Cvg~~~~-~~~~~w~Cp~C~~k~~ 328 (446)
....+.|.||+.+|..+ .||+||.|+.. ||.+||++++. .+.+.|||..|.-...
T Consensus 212 ~~E~~~C~IC~~~DpEd-VLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~ 268 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHDPED-VLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEI 268 (1134)
T ss_pred ccccccceeeccCChHH-hheeecccccceeeccccCcccccccccceecCcchhhhh
Confidence 34567899999998888 99999999977 99999999987 7778999999986443
No 8
>KOG1244|consensus
Probab=98.10 E-value=1e-06 Score=87.48 Aligned_cols=47 Identities=30% Similarity=0.812 Sum_probs=43.5
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCS 324 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~ 324 (446)
.+|.|||..++++ .++.||.|++.||.+|+.++.. ++.+.|.|-.|.
T Consensus 282 k~csicgtsendd-qllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 282 KYCSICGTSENDD-QLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred ceeccccCcCCCc-eeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 4799999988888 8999999999999999999998 888999999997
No 9
>KOG4323|consensus
Probab=97.83 E-value=7e-06 Score=87.04 Aligned_cols=50 Identities=32% Similarity=0.899 Sum_probs=40.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-----CCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~~k~ 327 (446)
..|| .|+.+..++ .||+|+.|+.|||..|..+... .....|||..|..+.
T Consensus 171 c~vC-~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 171 CSVC-YCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeee-ecCCcCccc-eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4456 567776666 8999999999999999988766 456789999999654
No 10
>KOG4299|consensus
Probab=97.75 E-value=1.3e-05 Score=87.06 Aligned_cols=49 Identities=33% Similarity=0.752 Sum_probs=41.2
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCC---CCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~---~~~~~w~Cp~C~~k 326 (446)
.+|..|++.+.-. .+|+||+|+..||+.|+.++.. .+.+.|+|+.|.-.
T Consensus 254 ~fCsaCn~~~~F~-~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLFN-DIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCccccc-cceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 3899999865442 5799999999999999999966 78889999999653
No 11
>KOG1844|consensus
Probab=97.74 E-value=4.5e-05 Score=81.06 Aligned_cols=59 Identities=27% Similarity=0.759 Sum_probs=49.5
Q ss_pred CCcccccccccCCC-CCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcccCchhhH
Q psy128 274 KQVWICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKEK 334 (446)
Q Consensus 274 ~~~~~C~VCg~pdd-~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~~~~K~k 334 (446)
.....| +|+..++ ++ +||+|+.|..|+|..|+|+.....+..|.|..|.++........
T Consensus 84 ~~~~~c-~c~~~~~~~g-~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~~~~ 143 (508)
T KOG1844|consen 84 REISRC-DCGLEDDMEG-LMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVERAL 143 (508)
T ss_pred Cccccc-ccccccCCCc-eeeCCcccCcccCceeeeecCCCCchhceeeeeccccccchhhh
Confidence 456779 9999888 66 99999999999999999998874467899999999877665443
No 12
>KOG1512|consensus
Probab=97.73 E-value=1.3e-05 Score=80.32 Aligned_cols=46 Identities=33% Similarity=0.702 Sum_probs=39.2
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcC-CCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCP-KCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp-~C~~ 325 (446)
.|.||++|...+ .|+.||.|++.||+.|||+... +.|.|+|. .|..
T Consensus 316 lC~IC~~P~~E~-E~~FCD~CDRG~HT~CVGL~~l-P~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 LCRICLGPVIES-EHLFCDVCDRGPHTLCVGLQDL-PRGEWICDMRCRE 362 (381)
T ss_pred hhhccCCcccch-heeccccccCCCCccccccccc-cCccchhhhHHHH
Confidence 588999998777 8999999999999999999766 55799998 3543
No 13
>KOG1632|consensus
Probab=97.11 E-value=0.00031 Score=72.61 Aligned_cols=51 Identities=33% Similarity=0.786 Sum_probs=43.6
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccc--cccCCC--CCCCcEEcCCCCCcccC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVC--VGLVAE--PETSDWFCPKCSKVDEG 329 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~C--vg~~~~--~~~~~w~Cp~C~~k~~~ 329 (446)
+| .|..+.+.+.+|+.||.|..|||+.| +|++.. +....|+|..|.....+
T Consensus 62 ~~-~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~ 116 (345)
T KOG1632|consen 62 YC-KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDG 116 (345)
T ss_pred hh-hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhh
Confidence 78 88888877558999999999999999 999887 66789999999875543
No 14
>KOG0955|consensus
Probab=96.97 E-value=0.00061 Score=78.75 Aligned_cols=128 Identities=18% Similarity=0.259 Sum_probs=74.8
Q ss_pred CcccccccccCCCC-CCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcccCchhhHhhhcccccccccccccccc
Q psy128 275 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYR 353 (446)
Q Consensus 275 ~~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~~~~K~kr~kkRkkk~~qs~~mstYr 353 (446)
++..|.||...+-. .+..|+||.|+..+|..|+|++.. +.+.|+|..|........ ... -....+-+
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~i-peg~WlCr~Cl~s~~~~v----------~c~-~cp~~~gA 285 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFI-PEGQWLCRRCLQSPQRPV----------RCL-LCPSKGGA 285 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCCCC-CCCcEeehhhccCcCccc----------ceE-eccCCCCc
Confidence 34578899865422 238999999999999999996655 668999999986654321 000 00111222
Q ss_pred eecCCccccccchhhhh--------------------HHhHHHHhhhccccccCCCChhhhhcCCChhhHHHHHhHHHhc
Q psy128 354 FERDPSELVDKSACAGS--------------------RADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFEC 413 (446)
Q Consensus 354 fErdpeeLk~~~SC~~i--------------------redLa~CLleSdC~~~~~~t~keCL~~~lp~eC~~l~~~f~eC 413 (446)
|......-|-...|+-. --..+-=|-++.|-..+-++..+|-.- .|.+.....-.-
T Consensus 286 Fkqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~----~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 286 FKQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKA----NCYTAFHVTCAR 361 (1051)
T ss_pred ceeccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchh----hhhhhhhhhhHh
Confidence 33322222222233211 011123456677766665677777654 577666666666
Q ss_pred cccCc
Q psy128 414 KRSLL 418 (446)
Q Consensus 414 KR~ll 418 (446)
+.||.
T Consensus 362 ~agl~ 366 (1051)
T KOG0955|consen 362 RAGLY 366 (1051)
T ss_pred hcCce
Confidence 66655
No 15
>KOG1245|consensus
Probab=96.91 E-value=0.00019 Score=85.21 Aligned_cols=52 Identities=27% Similarity=0.722 Sum_probs=45.4
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCccc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 328 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~~ 328 (446)
...|.+|....+.. .|+.||.|+.|||..|+.+... .+.++|+|+.|+....
T Consensus 1108 ~~~c~~cr~k~~~~-~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDE-KMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcccch-hhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 45799999877665 7999999999999999999988 7888999999997654
No 16
>KOG0383|consensus
Probab=96.91 E-value=0.00046 Score=76.89 Aligned_cols=51 Identities=27% Similarity=0.720 Sum_probs=40.2
Q ss_pred CCcccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCccc
Q psy128 274 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 328 (446)
Q Consensus 274 ~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~~ 328 (446)
.....|.||+ +++ ..|+||.|..|||.+|++++.. .+.+.|.|+.|.....
T Consensus 45 ~~~e~c~ic~---~~g-~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 45 AEQEACRICA---DGG-ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhhc---CCC-cEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 3455798999 344 5899999999999999999988 5555699999954443
No 17
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.77 E-value=0.00021 Score=50.99 Aligned_cols=34 Identities=35% Similarity=1.055 Sum_probs=19.8
Q ss_pred CeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 291 PMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 291 ~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
.||.|+.|+.+.|..|.|+........|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 5999999999999999999988666579998773
No 18
>KOG0957|consensus
Probab=96.73 E-value=0.0096 Score=64.06 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=41.2
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-----CCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~~ 325 (446)
...|.||.+..+-. .+++||.|+.-||+.|+.+++. ....-|.|..|..
T Consensus 544 ~ysCgiCkks~dQH-ll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQH-LLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhH-HHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 34699999876666 8999999999999999999998 2356799999943
No 19
>KOG0954|consensus
Probab=96.36 E-value=0.0016 Score=72.43 Aligned_cols=51 Identities=27% Similarity=0.698 Sum_probs=41.5
Q ss_pred CcccccccccCCCC-CCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
+...|.+|..+|.+ .+.||.||.|+.-.|..|.||... +.+.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~-p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEV-PEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeec-CCCCeeehhcccc
Confidence 35679999988632 247999999999999999999876 4478999998654
No 20
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.89 E-value=0.0048 Score=57.01 Aligned_cols=30 Identities=27% Similarity=0.710 Sum_probs=25.4
Q ss_pred cccccccccCCC-CCCCcEEcCCCCCcccCc
Q psy128 301 WYHWVCVGLVAE-PETSDWFCPKCSKVDEGS 330 (446)
Q Consensus 301 WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~~~~ 330 (446)
.||+.|+.+++. .+.++|+|+.|.....+.
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 489999999999 788999999998755443
No 21
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.67 E-value=0.089 Score=61.53 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.8
Q ss_pred cCCCCC
Q psy128 25 LQHPLI 30 (446)
Q Consensus 25 ~~~~~~ 30 (446)
|+||+|
T Consensus 293 L~h~~i 298 (1021)
T PTZ00266 293 LGYQII 298 (1021)
T ss_pred hccHHH
Confidence 445544
No 22
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=95.42 E-value=0.011 Score=62.90 Aligned_cols=51 Identities=31% Similarity=0.759 Sum_probs=36.4
Q ss_pred cccccccccCCCC--CCCeeecCCCCCccccccc--------ccCCC----CCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDG--SLPMIGCDGCDAWYHWVCV--------GLVAE----PETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~--~~~mIqCD~C~~WfH~~Cv--------g~~~~----~~~~~w~Cp~C~~k 326 (446)
.+.|.||++-|++ .-.||.||.|+.|-|+.|. |++.. ..+..|+|..|...
T Consensus 128 ~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 128 RCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred cCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 4457788875422 2389999999999999993 33332 23568999999854
No 23
>KOG0957|consensus
Probab=95.24 E-value=0.012 Score=63.21 Aligned_cols=50 Identities=30% Similarity=0.664 Sum_probs=36.8
Q ss_pred ccccccc--CCCCCCCeeecCCCCCcccccccccCCC------C---CCCcEEcCCCCCccc
Q psy128 278 ICPACGV--QDDGSLPMIGCDGCDAWYHWVCVGLVAE------P---ETSDWFCPKCSKVDE 328 (446)
Q Consensus 278 ~C~VCg~--pdd~~~~mIqCD~C~~WfH~~Cvg~~~~------~---~~~~w~Cp~C~~k~~ 328 (446)
+|.||-. .++.+ .+|+||.|+.-.|-.|.|+... . ....|||..|.-...
T Consensus 121 iCcVClg~rs~da~-ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAG-EILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred EEEEeecCcccccc-ceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 5669953 33444 6999999999999999998843 1 235799998875443
No 24
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.22 E-value=0.0079 Score=64.55 Aligned_cols=50 Identities=30% Similarity=0.695 Sum_probs=40.4
Q ss_pred ccccccccCCC-CCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 277 WICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 277 ~~C~VCg~pdd-~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
..|.+|...+. +.+.+|.||+|+..-|..|.||... +.|.|+|..|.-..
T Consensus 194 ~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~-peG~WlCrkCi~~~ 244 (669)
T COG5141 194 DICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFL-PEGFWLCRKCIYGE 244 (669)
T ss_pred hhhHhccccccCCcceEEEecCcchhhhhhcccceec-Ccchhhhhhhcccc
Confidence 36989987664 2247999999999999999999866 56799999997543
No 25
>KOG1632|consensus
Probab=95.21 E-value=0.0021 Score=66.61 Aligned_cols=56 Identities=29% Similarity=0.716 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCC----cEEcCCCCCc
Q psy128 271 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETS----DWFCPKCSKV 326 (446)
Q Consensus 271 ed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~----~w~Cp~C~~k 326 (446)
.++.....|..||..+....+||+|+.|..|||+.|+.+... .-.. .|+|+.|...
T Consensus 234 ~~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~ 295 (345)
T KOG1632|consen 234 APDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVL 295 (345)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeec
Confidence 334445678889987765469999999999999999999877 2223 4999999863
No 26
>KOG0956|consensus
Probab=94.81 E-value=0.013 Score=65.06 Aligned_cols=48 Identities=35% Similarity=0.823 Sum_probs=38.1
Q ss_pred cccccccC-CCCCCCeeecCC--CCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 278 ICPACGVQ-DDGSLPMIGCDG--CDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 278 ~C~VCg~p-dd~~~~mIqCD~--C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
-|.||... .+.++.+|.||+ |..+.|..|+||... +.+.|||..|...
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqV-PtGpWfCrKCesq 57 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQV-PTGPWFCRKCESQ 57 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEec-CCCchhhhhhhhh
Confidence 36699732 244568999996 999999999999765 6689999999754
No 27
>KOG4364|consensus
Probab=94.76 E-value=0.18 Score=56.07 Aligned_cols=16 Identities=13% Similarity=-0.124 Sum_probs=9.5
Q ss_pred HhHHHHhhhccccccC
Q psy128 372 ADLKLCLLETDCVQVD 387 (446)
Q Consensus 372 edLa~CLleSdC~~~~ 387 (446)
..++.|+..+-|.++.
T Consensus 612 A~~ah~a~d~ak~~~~ 627 (811)
T KOG4364|consen 612 ALTAHAAKDTAKLIIC 627 (811)
T ss_pred HHHHHHhhhhHHHhhh
Confidence 4456666666665554
No 28
>KOG4443|consensus
Probab=94.74 E-value=0.014 Score=64.45 Aligned_cols=47 Identities=32% Similarity=0.887 Sum_probs=38.9
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
.|..|+...|.. ..+.|+.|+..||++|..|.+. .+.+.|+|+.|..
T Consensus 70 vCe~c~~~gD~~-kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 70 VCEACGTTGDPK-KFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred eeeeccccCCcc-cccccccccccccccccCCccccccCcccccHHHHh
Confidence 576788665655 6778999999999999999988 7788999998754
No 29
>KOG4364|consensus
Probab=92.83 E-value=0.82 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=11.0
Q ss_pred CCCCCCCCCCchhhccccccCC
Q psy128 48 DKVSPKDKTSPKEKMSSKEKTS 69 (446)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~ 69 (446)
-+.++.|-.|..++|+----||
T Consensus 198 l~s~~~~~sSs~~~~~~~sdts 219 (811)
T KOG4364|consen 198 LKSWRSDLSSSAEKLGKISDTS 219 (811)
T ss_pred HhhccccchhhHhhhhccCCcc
Confidence 3445555555555555444443
No 30
>KOG0163|consensus
Probab=91.52 E-value=1.2 Score=50.81 Aligned_cols=6 Identities=33% Similarity=0.999 Sum_probs=2.9
Q ss_pred CCCccc
Q psy128 298 CDAWYH 303 (446)
Q Consensus 298 C~~WfH 303 (446)
|..-||
T Consensus 1091 CreEFh 1096 (1259)
T KOG0163|consen 1091 CREEFH 1096 (1259)
T ss_pred HHHHHH
Confidence 554444
No 31
>KOG1029|consensus
Probab=91.21 E-value=2.3 Score=48.68 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=11.5
Q ss_pred ccceeecccchhccchhhc
Q psy128 89 VPNIVKVTSSEDLGEIKKD 107 (446)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ 107 (446)
-|+.+.+.|..-+-+++-.
T Consensus 277 pp~~r~~rs~~sis~~~p~ 295 (1118)
T KOG1029|consen 277 PPSFRSSRSANSISGLEPG 295 (1118)
T ss_pred CcccccccCCCCccccccC
Confidence 3577777776555555443
No 32
>KOG1144|consensus
Probab=91.05 E-value=0.38 Score=54.69 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=2.8
Q ss_pred hhhhhc
Q psy128 391 PRQCLR 396 (446)
Q Consensus 391 ~keCL~ 396 (446)
.-+||+
T Consensus 491 lld~ir 496 (1064)
T KOG1144|consen 491 LLDKIR 496 (1064)
T ss_pred HHHHhh
Confidence 444554
No 33
>KOG2891|consensus
Probab=90.18 E-value=2.5 Score=43.29 Aligned_cols=67 Identities=36% Similarity=0.407 Sum_probs=34.1
Q ss_pred hhhhhhhHHHHHHhhhchhhH-----HHHhhhhhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhhhhhcch
Q psy128 114 KKTHKKKEKEKIKKKKDKKDK-----DKIKNKEKDKEKKEKEKGKKEE-KEKKEEKEKKEEKEFKMKEDKEKP 180 (446)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~ke~~e~e~~e~~~-k~~~~~~~~~~~~~~~~~~~k~~~ 180 (446)
+-.+|+-+-=+|+-.=|-+|+ +--+-+=.+.+++|.|+..+.. +|.+++.+++..+++++++..+..
T Consensus 296 elnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ 368 (445)
T KOG2891|consen 296 ELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELE 368 (445)
T ss_pred hhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334555555566654443333 2222233344667777654443 555555566666665555554444
No 34
>KOG3054|consensus
Probab=88.87 E-value=2.1 Score=43.09 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=6.3
Q ss_pred chhccchhhccccch
Q psy128 98 SEDLGEIKKDKSIKK 112 (446)
Q Consensus 98 ~~~~~~~~~~~~~~~ 112 (446)
.++-|-+--+...+-
T Consensus 81 ~ee~~~~dg~ee~~e 95 (299)
T KOG3054|consen 81 VEEEGSGDGDEEEPE 95 (299)
T ss_pred ccccccccccccccc
Confidence 344444444443333
No 35
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=88.27 E-value=2 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=11.6
Q ss_pred cccccccceeecc-cchhccchhh
Q psy128 84 GVTPMVPNIVKVT-SSEDLGEIKK 106 (446)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~~ 106 (446)
=|.|++-|+...+ |.-+.++|..
T Consensus 156 I~IPL~~~~~~~~~s~vdt~~i~~ 179 (489)
T PF05262_consen 156 IVIPLSDNILSGSLSDVDTDEISD 179 (489)
T ss_pred EEEeccccccCCCccccchhhccc
Confidence 3556664444422 4445666643
No 36
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=88.02 E-value=0.36 Score=45.81 Aligned_cols=47 Identities=28% Similarity=0.825 Sum_probs=35.5
Q ss_pred ccccccC---CCCCCCeeecCCCCCcccccccccCCC---------CCCCcEEcCCCCCc
Q psy128 279 CPACGVQ---DDGSLPMIGCDGCDAWYHWVCVGLVAE---------PETSDWFCPKCSKV 326 (446)
Q Consensus 279 C~VCg~p---dd~~~~mIqCD~C~~WfH~~Cvg~~~~---------~~~~~w~Cp~C~~k 326 (446)
|.+|+.. ..-+ .||.|-+|...||-.|+|+... ...+...|..|...
T Consensus 2 C~~C~~~g~~~~kG-~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 2 CDTCGYEGDDRNKG-PLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred cccccCCCCCccCC-CeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 7788542 2334 7999999999999999999876 23456678888854
No 37
>KOG1029|consensus
Probab=87.09 E-value=2.4 Score=48.45 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=18.1
Q ss_pred HhhhhhhcchHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHhhH
Q psy128 171 FKMKEDKEKPVEKIRKEEKDSEKEK-KSKDKDKKLKKEKLKKKK 213 (446)
Q Consensus 171 ~~~~~~k~~~~e~~rke~~~~e~ek-k~k~~~~k~kkek~kkkK 213 (446)
.+...+-+++.|++|.=++.+|+++ ++.+..+++++|=++.++
T Consensus 367 rk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 367 RKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555333333333 333333333444333343
No 38
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=86.90 E-value=0.26 Score=33.37 Aligned_cols=29 Identities=38% Similarity=0.703 Sum_probs=13.0
Q ss_pred cccccccCCCCCCCeeecCCCCCccccccc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV 307 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cv 307 (446)
.|.+|+.+.+++ .+-.|..|+.+.|..|+
T Consensus 2 ~C~~C~~~~~~~-~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-ceEECccCCCccChhcC
Confidence 588999987774 67889999999999884
No 39
>KOG1144|consensus
Probab=85.79 E-value=1.9 Score=49.35 Aligned_cols=11 Identities=18% Similarity=0.039 Sum_probs=6.6
Q ss_pred HHhHHHHhhhc
Q psy128 371 RADLKLCLLET 381 (446)
Q Consensus 371 redLa~CLleS 381 (446)
..-|.+||..+
T Consensus 488 KTKlld~ir~t 498 (1064)
T KOG1144|consen 488 KTKLLDKIRGT 498 (1064)
T ss_pred chHHHHHhhcc
Confidence 45566666655
No 40
>KOG2752|consensus
Probab=85.64 E-value=0.37 Score=49.65 Aligned_cols=32 Identities=25% Similarity=0.681 Sum_probs=25.3
Q ss_pred cccccccccCCCC-----CCCeeecCCCCCccc-ccccc
Q psy128 276 VWICPACGVQDDG-----SLPMIGCDGCDAWYH-WVCVG 308 (446)
Q Consensus 276 ~~~C~VCg~pdd~-----~~~mIqCD~C~~WfH-~~Cvg 308 (446)
..+| .|..++++ +..|+||-.|..||| -.|+.
T Consensus 128 G~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 128 GLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred ceeE-EecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 4579 99988755 348999999999999 66653
No 41
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=82.78 E-value=0.66 Score=35.18 Aligned_cols=32 Identities=22% Similarity=0.593 Sum_probs=16.9
Q ss_pred CeeecCCCCCcccccccccCC--CCCCCcEEcCCC
Q psy128 291 PMIGCDGCDAWYHWVCVGLVA--EPETSDWFCPKC 323 (446)
Q Consensus 291 ~mIqCD~C~~WfH~~Cvg~~~--~~~~~~w~Cp~C 323 (446)
.|||||.|..|=.+. .++.. ...++.|+|..-
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGGS
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCCC
Confidence 599999999998776 44433 222348999763
No 42
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.47 E-value=0.9 Score=35.58 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=26.3
Q ss_pred cccccccccCC--CCCCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
...|.+|+.+. .+ ..|.|..|..-||-.|...
T Consensus 5 ~~~C~~Cg~~~~~~d--DiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGD--DIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCC--CEEECCCCCCcccHHHHhh
Confidence 34799999877 44 4999999999999999843
No 43
>KOG4443|consensus
Probab=81.20 E-value=0.32 Score=54.18 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=38.1
Q ss_pred cccccccccCCCCC--CCeeecCCCCCcccccccccCCC-----CCCCcEEcCCCC
Q psy128 276 VWICPACGVQDDGS--LPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCS 324 (446)
Q Consensus 276 ~~~C~VCg~pdd~~--~~mIqCD~C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~ 324 (446)
..+|++|...+... ..|++|+.|.+|.|..|-++... ..+-.|-|.-|+
T Consensus 145 ~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR 200 (694)
T KOG4443|consen 145 LSYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCR 200 (694)
T ss_pred cccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceee
Confidence 36899998766333 25699999999999999998766 223489999998
No 44
>KOG1473|consensus
Probab=80.98 E-value=0.93 Score=53.36 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=37.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
...|.+|.. .+ ..+||+.|+.-||+.|+.++.. .+...|-|..|..
T Consensus 344 ddhcrf~~d--~~--~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHD--LG--DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCc--cc--ceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 346888873 34 4899999999999999999988 6677899999973
No 45
>KOG2626|consensus
Probab=76.57 E-value=3.1 Score=45.69 Aligned_cols=51 Identities=16% Similarity=0.527 Sum_probs=38.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-------CCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-------~~~~~w~Cp~C~~k~ 327 (446)
..+| .|+...+....-++|..|..|+|+.|+..... .....|.|..|....
T Consensus 20 ~~~~-y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~~ 77 (544)
T KOG2626|consen 20 ATVC-YCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPSG 77 (544)
T ss_pred cccc-ccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCcc
Confidence 3468 88887777778899999999999866543332 234479999999764
No 46
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=75.68 E-value=1.7 Score=37.21 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=25.8
Q ss_pred CcccccccccCCCCCCCeeecCC--CCCccccccccc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGL 309 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~--C~~WfH~~Cvg~ 309 (446)
....|.+|+.. .+ ..|+|.. |..+||..|.-.
T Consensus 54 ~~~~C~iC~~~--~G-~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GG-ACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--Cc-eeEEcCCCCCCcCCCHHHHHH
Confidence 34579999985 33 5999998 999999999643
No 47
>KOG2412|consensus
Probab=75.27 E-value=15 Score=40.64 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=9.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy128 144 KEKKEKEKGKKEEKEKKEEKEKKEE 168 (446)
Q Consensus 144 ke~~e~e~~e~~~k~~~~~~~~~~~ 168 (446)
...++.++-+..+.++++..+++.+
T Consensus 201 ~i~~~~q~~eqi~~~~~~~e~kr~E 225 (591)
T KOG2412|consen 201 AIQREKQRKEQIRERKERSEEKREE 225 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444444433333333333
No 48
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=75.17 E-value=2.6 Score=40.56 Aligned_cols=40 Identities=30% Similarity=0.828 Sum_probs=30.7
Q ss_pred ccccccccCC-----CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 277 WICPACGVQD-----DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pd-----d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
+.|.+|+.++ +.+ ..+.|+.|..-||-.|..- -.||.|..
T Consensus 153 fiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~--------~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK--------KSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC--------CCCCCcHh
Confidence 4688888533 333 6889999999999999973 12999984
No 49
>KOG4661|consensus
Probab=75.15 E-value=19 Score=40.33 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=12.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy128 148 EKEKGKKEEKEKKEEKEKKEEKEFKMKE 175 (446)
Q Consensus 148 e~e~~e~~~k~~~~~~~~~~~~~~~~~~ 175 (446)
-+++++..|.+++-+.+++.+....+++
T Consensus 620 ~Re~eer~RirE~rerEqR~~a~~ERee 647 (940)
T KOG4661|consen 620 RREAEERQRIREEREREQRRKAAVEREE 647 (940)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 50
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=72.45 E-value=20 Score=39.31 Aligned_cols=26 Identities=4% Similarity=-0.189 Sum_probs=11.3
Q ss_pred ccccCC---CCCCCeeecCCCCCccccccc
Q psy128 281 ACGVQD---DGSLPMIGCDGCDAWYHWVCV 307 (446)
Q Consensus 281 VCg~pd---d~~~~mIqCD~C~~WfH~~Cv 307 (446)
||++.. .+. +++-|..-+..-|.-|+
T Consensus 396 Ir~r~~~~~~~~-~vaI~g~~G~~~ikLvl 424 (489)
T PF05262_consen 396 IRGRTFYEREDD-LVAIAGCSGNAAIKLVL 424 (489)
T ss_pred eccceeEEcCCC-EEEEeccCCchheEEEe
Confidence 677532 233 44444433344444443
No 51
>KOG1512|consensus
Probab=72.34 E-value=1.1 Score=45.78 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=36.0
Q ss_pred cccccccccCCC-----CCCCeeecCCCCCcccccccccCCC----CCCCcEEcCCCC
Q psy128 276 VWICPACGVQDD-----GSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCS 324 (446)
Q Consensus 276 ~~~C~VCg~pdd-----~~~~mIqCD~C~~WfH~~Cvg~~~~----~~~~~w~Cp~C~ 324 (446)
...|.+|-.... -.+.||.|-.|...+|-+|+.++.. ...-.|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 345777753221 1137999999999999999998876 345579999987
No 52
>KOG2891|consensus
Probab=71.34 E-value=23 Score=36.56 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhch
Q psy128 181 VEKIRKEEKDSEKEKKSK 198 (446)
Q Consensus 181 ~e~~rke~~~~e~ekk~k 198 (446)
.|+.++|.++.++++++.
T Consensus 357 eekeq~eaee~~ra~kr~ 374 (445)
T KOG2891|consen 357 EEKEQKEAEELERARKRE 374 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 53
>KOG2689|consensus
Probab=68.10 E-value=27 Score=35.74 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=24.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHhchhhHHHH
Q psy128 150 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 204 (446)
Q Consensus 150 e~~e~~~k~~~~~~~~~~~~~~~~~~~k~~~~e~~rke~~~~e~ekk~k~~~~k~ 204 (446)
|..+..+.+.+.+.+.-..+..-+..+..+.+++.|++..+.++++++-....++
T Consensus 114 E~~~~~k~~~ks~~~~~~a~~r~q~~e~~~~~qkRrreK~e~~eaRqRV~~~Ie~ 168 (290)
T KOG2689|consen 114 EALEREKQRRKSGDEMSAAKRRLQDDEMRRAAQKRRREKAEDEEARQRVLRQIER 168 (290)
T ss_pred HhhhhHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444555555554444444444333333
No 54
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=66.16 E-value=3.9 Score=34.06 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG 308 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg 308 (446)
.|.+|+++-+.+.+.+..+ +..+|..|..
T Consensus 80 ~C~vC~k~l~~~~f~~~p~--~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGNSVFVVFPC--GHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCCceEEEeCC--CeEEeccccc
Confidence 5999999887775555544 4889999973
No 55
>KOG1246|consensus
Probab=64.70 E-value=12 Score=43.62 Aligned_cols=53 Identities=28% Similarity=0.609 Sum_probs=42.6
Q ss_pred CCCcccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCcc
Q psy128 273 SKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 327 (446)
Q Consensus 273 ~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~ 327 (446)
......|..|.+..... .. +|+.|..-||..|..++.. ...+.|.|+.|....
T Consensus 152 ~~~~~~~~~~~k~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (904)
T KOG1246|consen 152 FIDYPQCNTCSKGKEEK-LL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTP 205 (904)
T ss_pred cccchhhhccccCCCcc-ce-ecccccCcccccccCCCCCcCCcCcccCCcccccc
Confidence 33445688888765553 55 9999999999999999988 778899999998763
No 56
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=64.25 E-value=74 Score=29.84 Aligned_cols=7 Identities=57% Similarity=0.947 Sum_probs=2.8
Q ss_pred ccccccc
Q psy128 225 VIPKLTF 231 (446)
Q Consensus 225 v~~~~~~ 231 (446)
.++.++|
T Consensus 141 sRpKLsF 147 (149)
T PF15346_consen 141 SRPKLSF 147 (149)
T ss_pred CCCCCcC
Confidence 3344443
No 57
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=62.47 E-value=1.4e+02 Score=32.56 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=6.9
Q ss_pred hhhccccchhhhhhhh
Q psy128 104 IKKDKSIKKDKKTHKK 119 (446)
Q Consensus 104 ~~~~~~~~~~~~~~~~ 119 (446)
|.+.=-...+=..|+.
T Consensus 273 l~~~~P~~~~~~~~~~ 288 (429)
T PRK00247 273 LERKYPLTDEFKEHHA 288 (429)
T ss_pred HHHhcCCCcchHHHHH
Confidence 3344444444444443
No 58
>KOG2412|consensus
Probab=61.12 E-value=22 Score=39.53 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.8
Q ss_pred hhccccccC
Q psy128 60 EKMSSKEKT 68 (446)
Q Consensus 60 ~~~~~~~~~ 68 (446)
..|++.+.+
T Consensus 71 ~e~~~~~~~ 79 (591)
T KOG2412|consen 71 DEMESDEGE 79 (591)
T ss_pred HHHHhcccc
Confidence 344444433
No 59
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=60.86 E-value=4.7 Score=33.06 Aligned_cols=33 Identities=27% Similarity=0.687 Sum_probs=25.4
Q ss_pred cccccccccCCCCCCCeeecCC--CCCcccccccccCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVA 311 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~--C~~WfH~~Cvg~~~ 311 (446)
...|.+|+.+ .| -.|.|.. |..+||..|.--..
T Consensus 36 ~~~C~~C~~~-~G--a~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 36 KLKCSICKKK-GG--ACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCCcCCCCC-CC--eEEEEeCCCCCcEEChHHHccCC
Confidence 3469999976 23 4899996 99999999975443
No 60
>KOG4299|consensus
Probab=60.72 E-value=8 Score=43.25 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=38.8
Q ss_pred CCCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCC
Q psy128 270 TGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSK 325 (446)
Q Consensus 270 eed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~ 325 (446)
.....+...|.+|.. +++ .++|+.|...||+.|.+..+. .....|.|..|..
T Consensus 41 ~~~~k~~ts~~~~~~--~gn--~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 41 RRSGKAATSCGICKS--GGN--LLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred ccccchhhhcchhhh--cCC--ccccccCccccchhccCcccCcccccccccccCCCc
Confidence 344455677888885 444 789999999999999999888 3345677777765
No 61
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=56.20 E-value=4.6 Score=40.64 Aligned_cols=30 Identities=23% Similarity=0.591 Sum_probs=14.6
Q ss_pred CcccccccccCC-------CC--CCCeeecCCCCCcccc
Q psy128 275 QVWICPACGVQD-------DG--SLPMIGCDGCDAWYHW 304 (446)
Q Consensus 275 ~~~~C~VCg~pd-------d~--~~~mIqCD~C~~WfH~ 304 (446)
...+|+|||... ++ +.-++.|..|+.-+|+
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE-
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee
Confidence 346899999642 21 3479999999955554
No 62
>KOG2002|consensus
Probab=53.41 E-value=23 Score=41.71 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.9
Q ss_pred hhhhhHHHH
Q psy128 138 KNKEKDKEK 146 (446)
Q Consensus 138 ~~~e~~ke~ 146 (446)
++++.++|+
T Consensus 829 Aq~e~e~er 837 (1018)
T KOG2002|consen 829 AQEEDEEER 837 (1018)
T ss_pred HhHHHHHHH
Confidence 344444444
No 63
>KOG1829|consensus
Probab=51.57 E-value=4.6 Score=45.02 Aligned_cols=43 Identities=28% Similarity=0.721 Sum_probs=30.2
Q ss_pred cccccccccCC-----CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 276 VWICPACGVQD-----DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pd-----d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
.+.|.+|...+ ..+ ...-|+.|..|||-.|+..... .||.|..
T Consensus 511 gfiCe~Cq~~~iiyPF~~~-~~~rC~~C~avfH~~C~~r~s~------~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETR-NTRRCSTCLAVFHKKCLRRKSP------CCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccccc-cceeHHHHHHHHHHHHHhccCC------CCCchHH
Confidence 34677785322 122 4678999999999999976533 2999983
No 64
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=50.36 E-value=5 Score=28.88 Aligned_cols=43 Identities=21% Similarity=0.525 Sum_probs=28.1
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
.|.||......+..++... |+-.||..|+..-... ...||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~---~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR---NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh---CCcCCccC
Confidence 4889987664332566666 9999999998643331 23788774
No 65
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=50.25 E-value=8.9 Score=30.96 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=18.9
Q ss_pred cccccccCC--CCCCCeeecC--CCCCcccccccccCC-----C---CCCCcEEcCCCCC
Q psy128 278 ICPACGVQD--DGSLPMIGCD--GCDAWYHWVCVGLVA-----E---PETSDWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pd--d~~~~mIqCD--~C~~WfH~~Cvg~~~-----~---~~~~~w~Cp~C~~ 325 (446)
.|.||.... ++....+.|+ .|..-||..|+.--. . ......-||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 589998642 3444578898 799999999974221 1 2233577999984
No 66
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=49.87 E-value=15 Score=24.91 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=22.3
Q ss_pred cccccccCCCCCCCeeecCCCCCccccccc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV 307 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cv 307 (446)
.|.+|++.-++.. .-.|+.|..-.|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5889988655542 6679999998998884
No 67
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=48.40 E-value=8.6 Score=32.78 Aligned_cols=45 Identities=27% Similarity=0.709 Sum_probs=27.1
Q ss_pred ccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 279 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 279 C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
|+.|..|.++- ..| -..|+.-||..|+.-=.......=.||-|+.
T Consensus 35 Cp~Ck~Pgd~C-plv-~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 35 CPDCKFPGDDC-PLV-WGKCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCccCCCCCC-cee-eccCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 44444454443 333 3459999999997644332222458999984
No 68
>KOG3779|consensus
Probab=47.88 E-value=25 Score=38.43 Aligned_cols=55 Identities=38% Similarity=0.509 Sum_probs=33.5
Q ss_pred CCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCcc-cCCCCCCC------CCCCchhhcccc
Q psy128 11 SVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSK-MKDKVSPK------DKTSPKEKMSSK 65 (446)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~ 65 (446)
+|||-|..|-.---+.-||.-.|...|-|||.-++ -+|+|+|+ |.|||..+|||-
T Consensus 470 ~~~GG~~~PP~~~~F~~~~~~~~~~~~~~~~S~~~~~k~r~~~~~~D~~~~~~S~~t~~sS~ 531 (737)
T KOG3779|consen 470 SATGGFTTPPFRHPFPLPLMAYPFQSPLGAPSGSFSGKDRASPESLDLTRDTTSLRTKMSSH 531 (737)
T ss_pred cccCCCcCCCccCCccchhhhccccCccCCCcccccCCcccCcchhhhhcccccccccccCC
Confidence 35555555543333344555566667777776553 35788876 567777777764
No 69
>KOG3277|consensus
Probab=46.16 E-value=9.2 Score=36.07 Aligned_cols=25 Identities=20% Similarity=0.789 Sum_probs=19.3
Q ss_pred ccccccccc---------CCCCCCCeeecCCCCC
Q psy128 276 VWICPACGV---------QDDGSLPMIGCDGCDA 300 (446)
Q Consensus 276 ~~~C~VCg~---------pdd~~~~mIqCD~C~~ 300 (446)
.+.|.+|+. .+..++.+|+|++|..
T Consensus 79 ~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~ 112 (165)
T KOG3277|consen 79 AYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKN 112 (165)
T ss_pred EEEeeccCCccccccChhhhhCceEEEECCCCcc
Confidence 456999984 3455568999999986
No 70
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=45.82 E-value=16 Score=31.96 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=31.7
Q ss_pred cccccccccCCCCCCCeeec------CCC---CCcccccccccCCC------CCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGC------DGC---DAWYHWVCVGLVAE------PETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqC------D~C---~~WfH~~Cvg~~~~------~~~~~w~Cp~C~~ 325 (446)
-..|..|.+...+. .+.| ..| ..-|-..||--... .....|.||.|+.
T Consensus 7 g~~CHqCrqKt~~~--~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF--KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC--ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34688898755544 4566 566 77777777543322 3466899999985
No 71
>KOG2041|consensus
Probab=45.37 E-value=22 Score=40.90 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=35.3
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k 326 (446)
...|.+||-+-++. -++|..|..-| -.|+.-... .....|+|+.|...
T Consensus 1117 ~vdc~~cg~~i~~~--~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1117 KVDCSVCGAKIDPY--DLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHR 1165 (1189)
T ss_pred ceeeeecCCcCCcc--CCCChhhcCcC-ceeeccCCccccceEEEccccccc
Confidence 45699999876665 68999999866 568755444 34458999999853
No 72
>KOG4661|consensus
Probab=44.30 E-value=2e+02 Score=32.78 Aligned_cols=9 Identities=44% Similarity=0.826 Sum_probs=3.8
Q ss_pred cCCCCCCcC
Q psy128 6 FSPFPSVAG 14 (446)
Q Consensus 6 ~~~~~~~~~ 14 (446)
||-|--|.|
T Consensus 426 FSKyGKVvG 434 (940)
T KOG4661|consen 426 FSKYGKVVG 434 (940)
T ss_pred HHHhcceec
Confidence 344444444
No 73
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=44.00 E-value=21 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=25.1
Q ss_pred cccccccccCCCC-CCCeeecCCCCCcccccccccC
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLV 310 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~~ 310 (446)
..+|.+|+..-.+ ....+.|..|....|..|+...
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 4579999976522 2267899999999999998654
No 74
>KOG3799|consensus
Probab=43.07 E-value=9.3 Score=35.43 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=34.7
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCccc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 328 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~~ 328 (446)
.|.||.+.-..+-.--.|..|..-|...|-|-... ...-.|.|..|.+...
T Consensus 67 tC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 67 TCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred chhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 69999875432213346888888888888774444 3445799999986543
No 75
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=41.45 E-value=6.5 Score=32.00 Aligned_cols=26 Identities=23% Similarity=0.742 Sum_probs=16.3
Q ss_pred cccccccc---------CCCCCCCeeecCCCCCcc
Q psy128 277 WICPACGV---------QDDGSLPMIGCDGCDAWY 302 (446)
Q Consensus 277 ~~C~VCg~---------pdd~~~~mIqCD~C~~Wf 302 (446)
+.|.+|+. .+..+..+|+|++|..|+
T Consensus 5 FTC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~H 39 (66)
T PF05180_consen 5 FTCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRH 39 (66)
T ss_dssp EEETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EE
T ss_pred EEcCCCCCccceeeCHHHHhCCeEEEECCCCccee
Confidence 56888983 234455899999999873
No 76
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=39.92 E-value=14 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.9
Q ss_pred cccccccccCCCCCCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.+....+.|..|..-.|..|+..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 3479999976654312678999999999999754
No 77
>KOG3119|consensus
Probab=37.67 E-value=3.4e+02 Score=27.45 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=29.6
Q ss_pred HHHHHhhhchhhHHHHhhhhhHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Q psy128 122 KEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEE---KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 187 (446)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~e~~ke~~e~e~~e~~~---k~~~~~~~~~~~~~~~~~~~k~~~~e~~rke 187 (446)
+.+.++..|+++.+ ..++.++--++..++| |.++.+...+.....+..+.-+...++.+++
T Consensus 181 ~~~~~~~~~~~~~~-----y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 181 KSKLSSPVEKKDPE-----YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred hccCCCchhcCCHH-----HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666554 4455555556665555 2233333344444444444444444444444
No 78
>COG1773 Rubredoxin [Energy production and conversion]
Probab=36.86 E-value=25 Score=27.80 Aligned_cols=41 Identities=32% Similarity=0.714 Sum_probs=23.7
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
..|.+||-.++.+...--|+.|. |-.-...+++|+||.|..
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~p--------gT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAP--------GTPFEDLPDDWVCPECGV 44 (55)
T ss_pred eEecCCceEeccccCCccCCCCC--------CCchhhCCCccCCCCCCC
Confidence 35888986665442233333333 333233456899999985
No 79
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=36.43 E-value=20 Score=25.74 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred cccccccccCCCCC-CCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~~-~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.+. ...+.|+.|..-.|..|..-
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 34699998765541 25778999999999999754
No 80
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=36.31 E-value=71 Score=28.05 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=30.3
Q ss_pred cccccccCCC-CCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 278 ICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd-~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
.|..|+.+.+ -++.-..|..|....-..|..... ....|+|..|..
T Consensus 56 ~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~--~~~~WlC~vC~k 102 (118)
T PF02318_consen 56 HCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSK--KEPIWLCKVCQK 102 (118)
T ss_dssp B-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETS--SSCCEEEHHHHH
T ss_pred chhhhCCcccccCCCCCcCCcCCccccCccCCcCC--CCCCEEChhhHH
Confidence 6988987531 111357899999888888876632 345799999984
No 81
>PF11200 DUF2981: Protein of unknown function (DUF2981); InterPro: IPR021366 This eukaryotic family of proteins has no known function.
Probab=36.17 E-value=29 Score=34.58 Aligned_cols=40 Identities=43% Similarity=0.881 Sum_probs=25.4
Q ss_pred CCCCCcCCCCCCcCCCCCCCCCc--ccCCC---CCCCCCCCCCCCC
Q psy128 1 MFPFQFSPFPSVAGPGLIPRLPP--MLQHP---LIPQPLVHPPGTP 41 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~ 41 (446)
+|||.|--.|.-. -|.+|.||- .|.|| |-|..||||-.-.
T Consensus 56 lfpfnffklpndt-tgvlpql~h~dtlihpdtllhphslvhpdsla 100 (318)
T PF11200_consen 56 LFPFNFFKLPNDT-TGVLPQLQHYDTLIHPDTLLHPHSLVHPDSLA 100 (318)
T ss_pred EeecceecCCCCc-cccccCCCCCccccCcccccCcccccCccccC
Confidence 4899998888643 577777753 35555 4455666665443
No 82
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=36.15 E-value=15 Score=29.73 Aligned_cols=43 Identities=21% Similarity=0.512 Sum_probs=25.7
Q ss_pred ccccccCCCC---------CCCeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 279 CPACGVQDDG---------SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 279 C~VCg~pdd~---------~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
|.||..+..+ +...|.=..|+-.||..|+.-=+. ....||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~---~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK---QNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT---TSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh---cCCcCCCCC
Confidence 8899865421 113444456999999999863222 123888885
No 83
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=36.08 E-value=18 Score=33.95 Aligned_cols=24 Identities=29% Similarity=1.071 Sum_probs=15.1
Q ss_pred ccccccCCCCCCCeeecCCCCCcccc
Q psy128 279 CPACGVQDDGSLPMIGCDGCDAWYHW 304 (446)
Q Consensus 279 C~VCg~pdd~~~~mIqCD~C~~WfH~ 304 (446)
|..||-.+.. -.+.|..|+.||--
T Consensus 3 C~YCG~~~p~--~vv~C~~c~kWFCN 26 (152)
T PF09416_consen 3 CAYCGIHDPS--CVVKCNTCNKWFCN 26 (152)
T ss_dssp -TTT----CC--CEEEETTTTEEEES
T ss_pred ccccCCCCcc--cEeEcCCCCcEeec
Confidence 6678865444 49999999999843
No 84
>KOG1705|consensus
Probab=36.04 E-value=16 Score=31.77 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=33.6
Q ss_pred cccccccCCCCCCCeeecCCCC-CcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCD-AWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
.|.||..--..-...-.||.|+ .-|...|+--......+.|||..|....
T Consensus 29 kC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ectr~e 79 (110)
T KOG1705|consen 29 KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECTRQE 79 (110)
T ss_pred cccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHHhhc
Confidence 5888876444442455699999 6677778655444445679999998543
No 85
>KOG4571|consensus
Probab=35.03 E-value=5.4e+02 Score=26.79 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=20.0
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCc
Q psy128 18 IPRLPPMLQHPLIPQPLVHPPGTPPPSKMKDKVSPKDKTSP 58 (446)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (446)
.+.+|+|.|-+- |||.---||+|-+.---+-|++-+-+-+
T Consensus 120 ~~~~~~~~q~~~-~q~~~~~P~~p~~~~s~~~~~e~~~~~~ 159 (294)
T KOG4571|consen 120 PDNSPLNPQMVP-PQAPPPSPGGPDPFCSLELVHERCSMEP 159 (294)
T ss_pred CCCCCCccccCC-CCCCCCCCCCCCcccccCCCcccccccc
Confidence 344444444433 3332223466666665666666555555
No 86
>PF12773 DZR: Double zinc ribbon
Probab=34.33 E-value=35 Score=25.09 Aligned_cols=7 Identities=57% Similarity=1.777 Sum_probs=3.4
Q ss_pred ccccccc
Q psy128 278 ICPACGV 284 (446)
Q Consensus 278 ~C~VCg~ 284 (446)
+|..||.
T Consensus 14 fC~~CG~ 20 (50)
T PF12773_consen 14 FCPHCGT 20 (50)
T ss_pred CChhhcC
Confidence 4555554
No 87
>KOG3634|consensus
Probab=32.49 E-value=2.8e+02 Score=29.44 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=13.7
Q ss_pred HhHHHhccccCcccccccccccCC
Q psy128 407 KNTFFECKRSLLDTRQTVCRWIGK 430 (446)
Q Consensus 407 ~~~f~eCKR~llD~r~Rfrr~rGn 430 (446)
+..|.+ +|.++|++-+|--|.|-
T Consensus 313 rr~~~~-rr~~~~~~~~~p~~~~v 335 (361)
T KOG3634|consen 313 RRNFGD-RRYVFDNPEAIPCFPGV 335 (361)
T ss_pred hhhccc-hhhhhcCcccccccCCC
Confidence 333443 36677777766666664
No 88
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=32.25 E-value=53 Score=33.79 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=28.0
Q ss_pred cccccccccccccccceeecccchhccchhhccccchh
Q psy128 76 SKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKD 113 (446)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (446)
..+-|..+-|.||+=+||.-|--+-+=||.-..++..+
T Consensus 121 gdLFDFd~EV~PiLeVLVgKtlEQAl~EV~EEeEL~~l 158 (291)
T PF06098_consen 121 GDLFDFDEEVKPILEVLVGKTLEQALMEVMEEEELAAL 158 (291)
T ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999999999988877777776655544433
No 89
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=31.90 E-value=26 Score=34.77 Aligned_cols=33 Identities=24% Similarity=0.648 Sum_probs=23.4
Q ss_pred eeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 292 MIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 292 mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
-|.|-.|.. |..|+.+...+.+ .|+|++|....
T Consensus 192 alIC~~C~h--hngl~~~~ek~~~-efiC~~Cn~~n 224 (251)
T COG5415 192 ALICPQCHH--HNGLYRLAEKPII-EFICPHCNHKN 224 (251)
T ss_pred hhccccccc--cccccccccccch-heecccchhhc
Confidence 455666653 8888887766443 89999998654
No 90
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.54 E-value=38 Score=38.45 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=33.8
Q ss_pred cccccccCCCCCCCeeecCCCCCcc-cccccccCCCCCCCcEEcCCCCCccc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWY-HWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~Wf-H~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
.|+.||..-.++ .-.|..|+.-+ |..|..-....+.+.-||+.|-....
T Consensus 3 ~Cp~Cg~~n~~~--akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNN--NRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCC--CccccccCCCCCCCcCCCCCCCCCcccccccccCCccc
Confidence 588888654443 56888888543 35677666665667789999976544
No 91
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=31.50 E-value=30 Score=31.66 Aligned_cols=26 Identities=31% Similarity=0.815 Sum_probs=19.2
Q ss_pred cccccccccCCC-----CCCCeeecCCCCCc
Q psy128 276 VWICPACGVQDD-----GSLPMIGCDGCDAW 301 (446)
Q Consensus 276 ~~~C~VCg~pdd-----~~~~mIqCD~C~~W 301 (446)
.+.|..|+.||. +...++.|+.|+.+
T Consensus 97 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 97 YVICRECNRPDTRIIKEGRVSLLKCEACGAK 127 (133)
T ss_pred eEECCCCCCCCcEEEEeCCeEEEecccCCCC
Confidence 467999999873 34356789999865
No 92
>PLN02436 cellulose synthase A
Probab=30.64 E-value=33 Score=41.00 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=35.9
Q ss_pred cccccccc----CCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 277 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 277 ~~C~VCg~----pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
-.|+|||- ..+|+ ..|.|.-|..--.-.|... +...+.=.||.|....
T Consensus 37 ~iCqICGD~Vg~t~dGe-~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 37 QTCQICGDEIELTVDGE-PFVACNECAFPVCRPCYEY--ERREGNQACPQCKTRY 88 (1094)
T ss_pred ccccccccccCcCCCCC-EEEeeccCCCccccchhhh--hhhcCCccCcccCCch
Confidence 37999994 23555 7899999998777778733 3456778999998654
No 93
>KOG1244|consensus
Probab=29.99 E-value=17 Score=37.32 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=37.0
Q ss_pred CcccccccccCC-------CCCCCeeecCCCCCcccccccccCCC----CCCCcEEcCCCC
Q psy128 275 QVWICPACGVQD-------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCS 324 (446)
Q Consensus 275 ~~~~C~VCg~pd-------d~~~~mIqCD~C~~WfH~~Cvg~~~~----~~~~~w~Cp~C~ 324 (446)
...||..|-... -.+ .+|.|..|++.-|-+|+..+.. +..-.|.|-.|.
T Consensus 223 Pn~YCDFclgdsr~nkkt~~pe-elvscsdcgrsghpsclqft~nm~~avk~yrwqcieck 282 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPE-ELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK 282 (336)
T ss_pred CCcccceeccccccccccCCch-hhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc
Confidence 345788886321 123 6899999999999999998877 345589998887
No 94
>PLN02400 cellulose synthase
Probab=29.96 E-value=37 Score=40.67 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=35.7
Q ss_pred ccccccc----CCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 278 ICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 278 ~C~VCg~----pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
.|+|||- ..+|+ ..|.|..|..--.-.|.-. +...+.=.||.|..+..
T Consensus 38 iCqICGD~VG~t~dGe-~FVAC~eCaFPVCRpCYEY--ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGD-VFVACNECAFPVCRPCYEY--ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCC-EEEEEccCCCccccchhhe--ecccCCccCcccCCccc
Confidence 7999994 23566 7899999998777777733 35567789999986543
No 95
>KOG4218|consensus
Probab=29.55 E-value=23 Score=37.47 Aligned_cols=49 Identities=24% Similarity=0.734 Sum_probs=29.0
Q ss_pred ccccccccCCCC-CCCeeecCCCCCcc--------cccccccCCC--CCCCcEEcCCCCC
Q psy128 277 WICPACGVQDDG-SLPMIGCDGCDAWY--------HWVCVGLVAE--PETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pdd~-~~~mIqCD~C~~Wf--------H~~Cvg~~~~--~~~~~w~Cp~C~~ 325 (446)
..|+|||..-.| .-.++-|+.|...| |..|..-..- .....--||.|+.
T Consensus 16 ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 379999943211 12488999999877 4455432211 1223457888865
No 96
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=29.27 E-value=34 Score=31.45 Aligned_cols=27 Identities=37% Similarity=0.909 Sum_probs=20.1
Q ss_pred cccccccccCC-----CCCCCeeecCCCCCcc
Q psy128 276 VWICPACGVQD-----DGSLPMIGCDGCDAWY 302 (446)
Q Consensus 276 ~~~C~VCg~pd-----d~~~~mIqCD~C~~Wf 302 (446)
.+.|..|+.|| ++...++.|+.|+.+.
T Consensus 102 yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T PRK03988 102 YVICPECGSPDTKLIKEGRIWVLKCEACGAET 133 (138)
T ss_pred cEECCCCCCCCcEEEEcCCeEEEEcccCCCCC
Confidence 46799999987 3344678899998754
No 97
>KOG4628|consensus
Probab=28.20 E-value=39 Score=35.66 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=31.9
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
..|.||--.+..+ .-|-==-|.--||..|+++=+..- .-+||-|...
T Consensus 230 ~~CaIClEdY~~G-dklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-DKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccC-CeeeEecCCCchhhccchhhHhhc--CccCCCCCCc
Confidence 5698998766443 223335699999999998755411 3479999863
No 98
>KOG3654|consensus
Probab=27.94 E-value=1.3e+02 Score=33.67 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=13.9
Q ss_pred hHHHHhhhhhHHHHHHHHhhhHHHHHHHHH
Q psy128 133 DKDKIKNKEKDKEKKEKEKGKKEEKEKKEE 162 (446)
Q Consensus 133 ~~~~~~~~e~~ke~~e~e~~e~~~k~~~~~ 162 (446)
..++|+++---=-.+..-+++++|.|++.+
T Consensus 385 aedema~kraallekqqrraeear~rkqql 414 (708)
T KOG3654|consen 385 AEDEMAQKRAALLEKQQRRAEEARRRKQQL 414 (708)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466664433333333445555554433
No 99
>KOG1080|consensus
Probab=27.74 E-value=50 Score=39.42 Aligned_cols=50 Identities=24% Similarity=0.530 Sum_probs=41.1
Q ss_pred cccccccccCC-CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 276 VWICPACGVQD-DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pd-d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
...|.+|+-.. +..+.++.||.|...-|..|.|......+..|.|..|..
T Consensus 573 t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 623 (1005)
T KOG1080|consen 573 TERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCET 623 (1005)
T ss_pred cccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhcccc
Confidence 45698998543 344589999999999999999999886667899999986
No 100
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=27.54 E-value=28 Score=25.67 Aligned_cols=41 Identities=24% Similarity=0.541 Sum_probs=18.4
Q ss_pred ccccccCCCCCCCeeecC--CCCCcccccccccCCCCCCCcEEcCCC
Q psy128 279 CPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEPETSDWFCPKC 323 (446)
Q Consensus 279 C~VCg~pdd~~~~mIqCD--~C~~WfH~~Cvg~~~~~~~~~w~Cp~C 323 (446)
|.+|...-.- -+.|. .|+.-+|..|+.--....... .||.|
T Consensus 1 C~~C~~iv~~---G~~C~~~~C~~r~H~~C~~~y~r~~~~~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---GQRCSNRDCNVRLHDDCFKKYFRHRSNP-KCPNC 43 (43)
T ss_dssp -TTT-SB-SS---SEE-SS--S--EE-HHHHHHHTTT-SS--B-TTT
T ss_pred CcccchhHee---eccCCCCccCchHHHHHHHHHHhcCCCC-CCcCC
Confidence 4556643222 36788 599899999987554422222 67776
No 101
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.51 E-value=36 Score=40.72 Aligned_cols=47 Identities=30% Similarity=0.707 Sum_probs=35.5
Q ss_pred ccccccc----CCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 278 ICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 278 ~C~VCg~----pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
.|+|||- ..+|+ ..|.|.-|..--.-.|.-. +..++.=.||.|..+.
T Consensus 19 iCqICGD~vg~~~~Ge-~FVAC~eC~FPVCrpCYEY--Er~eG~q~CPqCktrY 69 (1079)
T PLN02638 19 VCQICGDNVGKTVDGE-PFVACDVCAFPVCRPCYEY--ERKDGNQSCPQCKTKY 69 (1079)
T ss_pred eeeecccccCcCCCCC-EEEEeccCCCccccchhhh--hhhcCCccCCccCCch
Confidence 7999994 23566 7899999998777778733 3456778999998654
No 102
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.99 E-value=47 Score=34.47 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=26.6
Q ss_pred cccccccccCC---------CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 276 VWICPACGVQD---------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 276 ~~~C~VCg~pd---------d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
..+|+|||... .++..++.|..|...+|+. .-.|+.|.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-----------R~~C~~Cg 233 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-----------RVKCSNCE 233 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-----------CccCCCCC
Confidence 45899999642 2334789999999666642 34688887
No 103
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=26.89 E-value=14 Score=31.14 Aligned_cols=47 Identities=23% Similarity=0.637 Sum_probs=21.0
Q ss_pred cccccccc----CCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 277 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~----pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
-.|+|||- ..+|+ ..|.|..|..-.--.|+-... ..+.-.|+.|...
T Consensus 10 qiCqiCGD~VGl~~~Ge-~FVAC~eC~fPvCr~CyEYEr--keg~q~CpqCkt~ 60 (80)
T PF14569_consen 10 QICQICGDDVGLTENGE-VFVACHECAFPVCRPCYEYER--KEGNQVCPQCKTR 60 (80)
T ss_dssp -B-SSS--B--B-SSSS-B--S-SSS-----HHHHHHHH--HTS-SB-TTT--B
T ss_pred cccccccCccccCCCCC-EEEEEcccCCccchhHHHHHh--hcCcccccccCCC
Confidence 36999983 33555 889999999876666664432 3456789999844
No 104
>KOG3612|consensus
Probab=26.36 E-value=81 Score=35.25 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=37.8
Q ss_pred CCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCC
Q psy128 271 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSK 325 (446)
Q Consensus 271 ed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~ 325 (446)
...+...+|.-|..+ + ..+-|+.|.+-||..|..+... ....-|.|+.|..
T Consensus 55 ~~~N~d~~cfechlp--g--~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 55 PSSNIDPFCFECHLP--G--AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred cccCCCcccccccCC--c--ceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 334456689888863 3 3788999999999999988776 3344688888754
No 105
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=26.29 E-value=35 Score=24.41 Aligned_cols=10 Identities=20% Similarity=1.016 Sum_probs=5.4
Q ss_pred CCcEEcCCCC
Q psy128 315 TSDWFCPKCS 324 (446)
Q Consensus 315 ~~~w~Cp~C~ 324 (446)
++.|||..|-
T Consensus 23 dG~~yC~~cG 32 (36)
T PF11781_consen 23 DGFYYCDRCG 32 (36)
T ss_pred CCEEEhhhCc
Confidence 4556665553
No 106
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=26.24 E-value=20 Score=24.23 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=26.7
Q ss_pred ccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 279 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 279 C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
|.+|...... .+....|+-.||..|+..-... +...||.|..
T Consensus 2 C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhC---ceEecCCCChhcHHHHHHHHHh--CcCCCCCCCC
Confidence 6788765422 3344558888999998643322 3467988874
No 107
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=25.99 E-value=3.5e+02 Score=29.37 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=25.2
Q ss_pred cccccccceeecccchhccchhhccc---cchhhhhhhhhHHHHHHhh
Q psy128 84 GVTPMVPNIVKVTSSEDLGEIKKDKS---IKKDKKTHKKKEKEKIKKK 128 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 128 (446)
-+|-++||-+.+.-.+-+..++--+. ++|-++..++|-..-|-++
T Consensus 38 lltavlpnsind~r~e~faslelteqpq~vek~kk~~kkk~qk~~akd 85 (510)
T PF04747_consen 38 LLTAVLPNSINDKRKEAFASLELTEQPQKVEKVKKSEKKKAQKQIAKD 85 (510)
T ss_pred HHHHhccccccHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 36788999888776665555443332 4444444444444444433
No 108
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.90 E-value=50 Score=34.18 Aligned_cols=38 Identities=32% Similarity=0.823 Sum_probs=26.7
Q ss_pred cccccccccCC----------CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 276 VWICPACGVQD----------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 276 ~~~C~VCg~pd----------d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
..+|+|||... .++..++.|..|..-+|+. .--|+.|.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-----------R~~C~~Cg 231 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-----------RVKCSHCE 231 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-----------CccCCCCC
Confidence 45899999642 1233799999999666642 34688887
No 109
>PRK12704 phosphodiesterase; Provisional
Probab=25.53 E-value=5.8e+02 Score=28.31 Aligned_cols=13 Identities=0% Similarity=-0.276 Sum_probs=6.4
Q ss_pred CCcccccccccCC
Q psy128 299 DAWYHWVCVGLVA 311 (446)
Q Consensus 299 ~~WfH~~Cvg~~~ 311 (446)
+...-++|.++..
T Consensus 250 p~~v~ls~~~~~r 262 (520)
T PRK12704 250 PEAVILSGFDPIR 262 (520)
T ss_pred CCeEEEecCChhh
Confidence 4444455655544
No 110
>KOG2879|consensus
Probab=25.29 E-value=40 Score=34.63 Aligned_cols=48 Identities=27% Similarity=0.610 Sum_probs=28.6
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
..|.+||.+..-- +.|+| |+.-|..+|+.-... -+..|.||.|.....
T Consensus 240 ~~C~~Cg~~PtiP-~~~~~--C~HiyCY~Ci~ts~~-~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 240 TECPVCGEPPTIP-HVIGK--CGHIYCYYCIATSRL-WDASFTCPLCGENVE 287 (298)
T ss_pred ceeeccCCCCCCC-eeecc--ccceeehhhhhhhhc-chhhcccCccCCCCc
Confidence 4699999765444 44442 444555666654333 223589999985443
No 111
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=24.72 E-value=2e+02 Score=31.91 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.1
Q ss_pred HHHhhhhhhcc
Q psy128 169 KEFKMKEDKEK 179 (446)
Q Consensus 169 ~~~~~~~~k~~ 179 (446)
.+.+..+++++
T Consensus 279 e~kk~~Ee~r~ 289 (492)
T PF02029_consen 279 EEKKEREERRR 289 (492)
T ss_pred HHHHHHhhhhc
Confidence 33333333333
No 112
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.68 E-value=47 Score=39.66 Aligned_cols=48 Identities=27% Similarity=0.662 Sum_probs=35.9
Q ss_pred cccccccc----CCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 277 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 277 ~~C~VCg~----pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
..|+|||- ..+|+ ..|.|.-|..-..-.|... +...+.=.||.|....
T Consensus 16 ~~c~iCGd~vg~~~~Ge-~FVAC~eC~fpvCr~cyey--e~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQ-PFVACHVCGFPVCKPCYEY--ERSEGNQCCPQCNTRY 67 (1044)
T ss_pred chhhccccccCcCCCCC-EEEEeccCCCccccchhhh--hhhcCCccCCccCCch
Confidence 47999994 23555 7899999998877788733 3456778999998654
No 113
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=24.62 E-value=35 Score=28.38 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=19.9
Q ss_pred CeeecCC-CCCcccccccccCCC------CCCCcEEcCCCC
Q psy128 291 PMIGCDG-CDAWYHWVCVGLVAE------PETSDWFCPKCS 324 (446)
Q Consensus 291 ~mIqCD~-C~~WfH~~Cvg~~~~------~~~~~w~Cp~C~ 324 (446)
-||.|.. =+.|.|..|+++... ....+|||..=.
T Consensus 29 AMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~dH~ 69 (78)
T PF13341_consen 29 AMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCNDHV 69 (78)
T ss_dssp -EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TTTT
T ss_pred eEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhhhh
Confidence 6999986 458999999998765 355689997643
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.61 E-value=52 Score=37.95 Aligned_cols=43 Identities=28% Similarity=0.645 Sum_probs=26.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcc--c-----ccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWY--H-----WVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~Wf--H-----~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|..|| ....|..|+.|+ | +.|..-... ..-...||.|...
T Consensus 435 ~l~C~~Cg-------~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG-------YIAECPNCDSPLTLHKATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eeecccCC-------CcccCCCCCcceEEecCCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 45698898 477899999775 2 244332222 1224788888754
No 115
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=24.57 E-value=45 Score=29.48 Aligned_cols=25 Identities=36% Similarity=0.962 Sum_probs=18.2
Q ss_pred cccccccccCCC-----CCCCeeecCCCCC
Q psy128 276 VWICPACGVQDD-----GSLPMIGCDGCDA 300 (446)
Q Consensus 276 ~~~C~VCg~pdd-----~~~~mIqCD~C~~ 300 (446)
.+.|..|+.||. +...++.|+.|+.
T Consensus 80 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 467999999873 3335677998874
No 116
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.76 E-value=6.6e+02 Score=27.82 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhc---chHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhh
Q psy128 136 KIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE---KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 212 (446)
Q Consensus 136 ~~~~~e~~ke~~e~e~~e~~~k~~~~~~~~~~~~~~~~~~~k~---~~~e~~rke~~~~e~ekk~k~~~~k~kkek~kkk 212 (446)
+.+..+.+...++++.+.++...+.....+++....+.+-+++ +..+-..+|.+...++..-..+.....+.++...
T Consensus 28 ~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le 107 (514)
T TIGR03319 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLE 107 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhh
Q psy128 213 KKEKE 217 (446)
Q Consensus 213 K~EKe 217 (446)
.+++.
T Consensus 108 ~ke~~ 112 (514)
T TIGR03319 108 KKEKE 112 (514)
T ss_pred HHHHH
No 117
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=23.54 E-value=28 Score=28.51 Aligned_cols=28 Identities=43% Similarity=0.914 Sum_probs=23.6
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV 310 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~ 310 (446)
..| .|.. .-||.|-+|+..-|-.|+|+.
T Consensus 34 ~~C-~C~L-----kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 34 NKC-ACSL-----KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred ccc-ccch-----HHHHHHhhccchhccccccHH
Confidence 357 7775 259999999999999999986
No 118
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.50 E-value=3.2e+02 Score=30.91 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=8.9
Q ss_pred HHHhhhccccc
Q psy128 375 KLCLLETDCVQ 385 (446)
Q Consensus 375 a~CLleSdC~~ 385 (446)
+.||.++|+..
T Consensus 243 aVsiieTDi~V 253 (567)
T PLN03086 243 SVSVLETDIEV 253 (567)
T ss_pred eeEEEeCceEE
Confidence 78888888865
No 119
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=22.50 E-value=51 Score=31.86 Aligned_cols=27 Identities=37% Similarity=0.866 Sum_probs=18.7
Q ss_pred cccccccccCCC-----CCCCeeecCCCCCcc
Q psy128 276 VWICPACGVQDD-----GSLPMIGCDGCDAWY 302 (446)
Q Consensus 276 ~~~C~VCg~pdd-----~~~~mIqCD~C~~Wf 302 (446)
.+.|..|+.||. +...++.|+.|+.+.
T Consensus 98 yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 98 YVICSECGLPDTRLVKEDRVLMLRCDACGAHR 129 (201)
T ss_pred eEECCCCCCCCcEEEEcCCeEEEEcccCCCCc
Confidence 467999999873 333566788888653
No 120
>KOG1924|consensus
Probab=22.29 E-value=1.8e+02 Score=34.28 Aligned_cols=60 Identities=32% Similarity=0.496 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCCCCCccc----CCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhhccccccCCchhhcccccccccc
Q psy128 8 PFPSVAGPGLIPRLPPML----QHPLIPQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVEL 83 (446)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (446)
|-|--.|+|.-|--|||- --|.-|.|.-.++..|||.-+--.--|-.-..|
T Consensus 547 pPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~------------------------- 601 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPP------------------------- 601 (1102)
T ss_pred CCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCC-------------------------
Q ss_pred cccccccce
Q psy128 84 GVTPMVPNI 92 (446)
Q Consensus 84 ~~~~~~~~~ 92 (446)
|..||+|||
T Consensus 602 gm~pmaPvl 610 (1102)
T KOG1924|consen 602 GMFPMAPVL 610 (1102)
T ss_pred CcccccccC
No 121
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.72 E-value=2.7e+02 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=10.7
Q ss_pred hHHHHHHHHhhhHHHHHHHHHH
Q psy128 142 KDKEKKEKEKGKKEEKEKKEEK 163 (446)
Q Consensus 142 ~~ke~~e~e~~e~~~k~~~~~~ 163 (446)
-+...+-.|+.+.||.+-+++-
T Consensus 75 pd~v~~rqEa~eaAR~RmQEE~ 96 (190)
T PF06936_consen 75 PDVVVRRQEAMEAARRRMQEEL 96 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544433
No 122
>PLN02189 cellulose synthase
Probab=20.71 E-value=63 Score=38.64 Aligned_cols=47 Identities=26% Similarity=0.625 Sum_probs=35.5
Q ss_pred cccccccC----CCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 278 ICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 278 ~C~VCg~p----dd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
.|+|||-. .+|+ ..|.|.-|..--.-.|.-. +...+.=.||.|..+.
T Consensus 36 ~C~iCgd~vg~~~~g~-~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 36 VCEICGDEIGLTVDGD-LFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTRY 86 (1040)
T ss_pred cccccccccCcCCCCC-EEEeeccCCCccccchhhh--hhhcCCccCcccCCch
Confidence 79999953 3555 7899999998777778733 3456778999998654
No 123
>KOG0345|consensus
Probab=20.69 E-value=3.7e+02 Score=30.05 Aligned_cols=30 Identities=40% Similarity=0.614 Sum_probs=17.0
Q ss_pred CcCCCC-CCCCCcccC--CCCCCCCCCCCCCCC
Q psy128 12 VAGPGL-IPRLPPMLQ--HPLIPQPLVHPPGTP 41 (446)
Q Consensus 12 ~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 41 (446)
||.-|| ||.+--.+| -|.-|.-+||--|-.
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 555555 555544444 355666677776643
No 124
>KOG3654|consensus
Probab=20.36 E-value=4.4e+02 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=10.8
Q ss_pred ccCCchhhccccccccccccccccc
Q psy128 66 EKTSPKEKEYSKVKDVELGVTPMVP 90 (446)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (446)
+.+.|.++. +.-.++++-|+-+++
T Consensus 320 ~~g~p~~k~-~~p~~~ei~v~e~~~ 343 (708)
T KOG3654|consen 320 EEGPPEEKA-ARPGLIEIPVGELAD 343 (708)
T ss_pred CCCCccccc-cCcccccccccccCC
Confidence 334444443 233455555554443
No 125
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.22 E-value=73 Score=24.17 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=7.6
Q ss_pred CCCcEEcCCCCCc
Q psy128 314 ETSDWFCPKCSKV 326 (446)
Q Consensus 314 ~~~~w~Cp~C~~k 326 (446)
-+++|.||.|...
T Consensus 31 Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 31 LPDDWVCPVCGAP 43 (47)
T ss_dssp S-TT-B-TTTSSB
T ss_pred CCCCCcCcCCCCc
Confidence 3568999999854
Done!