Query psy128
Match_columns 446
No_of_seqs 329 out of 1342
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:55:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lv9_A Histone-lysine N-methyl 99.5 4.2E-14 1.4E-18 119.4 5.3 65 271-337 23-87 (98)
2 2k16_A Transcription initiatio 99.4 5.2E-14 1.8E-18 112.6 1.9 55 270-325 12-67 (75)
3 1weu_A Inhibitor of growth fam 99.4 1.1E-12 3.8E-17 109.8 8.5 55 268-326 28-85 (91)
4 1wee_A PHD finger family prote 99.4 1.7E-13 6E-18 109.2 2.8 56 269-325 9-65 (72)
5 3o70_A PHD finger protein 13; 99.3 2.7E-13 9.1E-18 107.6 2.6 54 270-325 13-66 (68)
6 1wew_A DNA-binding family prot 99.3 4.4E-13 1.5E-17 108.6 2.6 56 269-326 9-72 (78)
7 2jmi_A Protein YNG1, ING1 homo 99.3 2.2E-13 7.6E-18 113.9 0.2 51 271-325 21-75 (90)
8 1wen_A Inhibitor of growth fam 99.3 2.5E-12 8.6E-17 102.9 6.2 56 267-326 7-65 (71)
9 1wem_A Death associated transc 99.3 2.4E-13 8.1E-18 109.2 -0.3 50 275-326 15-70 (76)
10 1we9_A PHD finger family prote 99.3 7.5E-13 2.6E-17 102.8 2.4 52 275-326 5-58 (64)
11 3o7a_A PHD finger protein 13 v 99.3 9.3E-13 3.2E-17 98.9 1.5 48 275-324 3-50 (52)
12 3kqi_A GRC5, PHD finger protei 99.3 3.2E-13 1.1E-17 108.5 -1.3 55 272-327 6-62 (75)
13 1wep_A PHF8; structural genomi 99.2 3.6E-12 1.2E-16 103.3 4.2 53 274-327 10-64 (79)
14 2rsd_A E3 SUMO-protein ligase 99.2 2.1E-12 7.1E-17 102.1 2.2 52 272-325 6-64 (68)
15 2g6q_A Inhibitor of growth pro 99.2 4E-12 1.4E-16 99.2 0.9 52 270-325 5-59 (62)
16 3c6w_A P28ING5, inhibitor of g 99.1 5.2E-12 1.8E-16 97.6 0.8 50 272-325 5-57 (59)
17 2vnf_A ING 4, P29ING4, inhibit 99.1 6E-12 2.1E-16 97.4 0.7 51 271-325 5-58 (60)
18 1x4i_A Inhibitor of growth pro 99.1 1.2E-11 4.1E-16 98.7 2.2 49 273-325 3-54 (70)
19 2kgg_A Histone demethylase jar 99.1 8.5E-12 2.9E-16 93.8 0.9 48 277-324 3-52 (52)
20 2vpb_A Hpygo1, pygopus homolog 99.1 6.7E-12 2.3E-16 98.9 -0.1 50 275-324 7-64 (65)
21 1f62_A Transcription factor WS 99.1 4.1E-11 1.4E-15 89.1 3.4 47 278-325 2-49 (51)
22 1mm2_A MI2-beta; PHD, zinc fin 99.0 3.8E-10 1.3E-14 87.4 4.9 49 275-327 8-57 (61)
23 2ri7_A Nucleosome-remodeling f 99.0 4.9E-11 1.7E-15 108.6 -0.4 52 274-326 6-59 (174)
24 2xb1_A Pygopus homolog 2, B-ce 99.0 8.8E-11 3E-15 100.3 0.7 51 276-326 3-61 (105)
25 2e6r_A Jumonji/ARID domain-con 99.0 2E-10 6.8E-15 96.0 2.6 49 276-325 16-65 (92)
26 2l5u_A Chromodomain-helicase-D 98.9 3.6E-10 1.2E-14 87.5 3.6 47 275-325 10-57 (61)
27 3kv5_D JMJC domain-containing 98.9 4.4E-11 1.5E-15 125.9 -2.7 56 272-328 33-90 (488)
28 2lri_C Autoimmune regulator; Z 98.9 9E-10 3.1E-14 86.9 4.9 47 276-326 12-59 (66)
29 2yt5_A Metal-response element- 98.9 3.1E-10 1.1E-14 88.4 1.5 52 275-327 5-62 (66)
30 1xwh_A Autoimmune regulator; P 98.9 4.2E-10 1.4E-14 88.3 2.0 47 276-326 8-55 (66)
31 2l43_A N-teminal domain from h 98.9 4.7E-10 1.6E-14 93.0 1.7 49 276-326 25-75 (88)
32 2yql_A PHD finger protein 21A; 98.9 8.2E-10 2.8E-14 83.9 2.8 45 276-324 9-54 (56)
33 3asl_A E3 ubiquitin-protein li 98.9 1.1E-09 3.6E-14 87.3 3.5 47 278-325 20-68 (70)
34 2ku3_A Bromodomain-containing 98.8 6.5E-10 2.2E-14 88.9 1.8 48 276-325 16-65 (71)
35 2puy_A PHD finger protein 21A; 98.8 3.6E-10 1.2E-14 87.0 0.2 46 276-325 5-51 (60)
36 2e6s_A E3 ubiquitin-protein li 98.8 2E-09 6.8E-14 87.3 4.2 47 278-325 28-76 (77)
37 3kv4_A PHD finger protein 8; e 98.8 1.7E-10 5.7E-15 120.4 -3.2 55 274-329 3-59 (447)
38 3u5n_A E3 ubiquitin-protein li 98.8 2.9E-09 9.9E-14 99.9 4.0 48 276-327 7-55 (207)
39 3lqh_A Histone-lysine N-methyl 98.7 1.3E-09 4.3E-14 101.7 0.8 52 278-329 4-66 (183)
40 1wev_A Riken cDNA 1110020M19; 98.7 1.7E-09 5.9E-14 89.5 1.5 52 275-326 15-72 (88)
41 1fp0_A KAP-1 corepressor; PHD 98.7 1.6E-08 5.3E-13 84.3 5.7 47 276-326 25-72 (88)
42 3shb_A E3 ubiquitin-protein li 98.7 7.3E-09 2.5E-13 84.1 3.1 47 278-325 28-76 (77)
43 3o36_A Transcription intermedi 98.6 1.5E-08 5.1E-13 93.2 4.6 47 277-327 5-52 (184)
44 3ask_A E3 ubiquitin-protein li 98.6 1.1E-08 3.9E-13 98.1 3.1 49 276-325 174-224 (226)
45 2kwj_A Zinc finger protein DPF 98.6 1.3E-08 4.6E-13 87.5 2.0 47 278-325 60-107 (114)
46 3v43_A Histone acetyltransfera 98.5 5.2E-08 1.8E-12 83.5 4.5 48 278-325 63-111 (112)
47 4gne_A Histone-lysine N-methyl 98.5 5.2E-08 1.8E-12 83.7 3.2 45 275-324 14-60 (107)
48 2ysm_A Myeloid/lymphoid or mix 98.4 5.9E-08 2E-12 82.6 2.5 48 278-326 56-104 (111)
49 2ro1_A Transcription intermedi 98.4 1.6E-07 5.4E-12 87.4 3.9 46 278-327 4-50 (189)
50 3pur_A Lysine-specific demethy 98.3 1.4E-07 4.7E-12 100.0 2.4 45 282-326 48-94 (528)
51 2ysm_A Myeloid/lymphoid or mix 98.0 3.6E-06 1.2E-10 71.5 4.4 47 277-324 8-55 (111)
52 2lbm_A Transcriptional regulat 97.9 3.2E-06 1.1E-10 76.0 2.9 50 275-328 62-119 (142)
53 3rsn_A SET1/ASH2 histone methy 97.8 1.5E-05 5.2E-10 73.9 4.6 51 276-327 5-60 (177)
54 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 4.5E-06 1.5E-10 71.0 0.9 38 291-328 1-46 (140)
55 3ql9_A Transcriptional regulat 97.5 2.1E-05 7E-10 69.7 1.6 51 274-328 55-113 (129)
56 4bbq_A Lysine-specific demethy 97.5 3.4E-05 1.2E-09 65.7 2.3 47 281-327 64-115 (117)
57 3v43_A Histone acetyltransfera 97.5 2.4E-05 8.2E-10 66.9 0.8 47 277-324 6-62 (112)
58 2kwj_A Zinc finger protein DPF 97.2 4.8E-05 1.7E-09 65.2 -0.1 46 278-324 3-59 (114)
59 1wil_A KIAA1045 protein; ring 95.9 0.0045 1.6E-07 51.2 3.0 47 277-325 16-75 (89)
60 3a1b_A DNA (cytosine-5)-methyl 92.2 0.048 1.6E-06 49.8 1.7 51 275-329 78-137 (159)
61 2pv0_B DNA (cytosine-5)-methyl 91.1 0.072 2.5E-06 54.7 1.9 53 273-329 90-151 (386)
62 2ysl_A Tripartite motif-contai 85.6 0.75 2.6E-05 34.6 3.9 47 276-326 20-66 (73)
63 1iym_A EL5; ring-H2 finger, ub 83.6 0.78 2.7E-05 32.7 3.0 46 277-325 6-51 (55)
64 2kiz_A E3 ubiquitin-protein li 82.9 0.38 1.3E-05 36.1 1.1 47 276-326 14-60 (69)
65 2ect_A Ring finger protein 126 82.6 1 3.5E-05 34.5 3.5 48 276-327 15-62 (78)
66 2ct2_A Tripartite motif protei 79.7 0.8 2.7E-05 35.6 2.0 50 276-326 15-65 (88)
67 2lq6_A Bromodomain-containing 79.5 0.83 2.8E-05 37.3 2.1 32 275-308 16-49 (87)
68 2ecj_A Tripartite motif-contai 79.1 1.7 5.9E-05 31.0 3.5 44 276-323 15-58 (58)
69 2d8s_A Cellular modulator of i 76.2 1.4 4.6E-05 35.2 2.4 50 278-328 17-69 (80)
70 2ysj_A Tripartite motif-contai 75.7 1.2 4.1E-05 32.7 1.8 44 276-323 20-63 (63)
71 2ecm_A Ring finger and CHY zin 75.1 0.93 3.2E-05 32.2 1.1 47 277-326 6-52 (55)
72 2e61_A Zinc finger CW-type PWW 73.9 2.6 8.9E-05 33.3 3.4 30 291-321 17-48 (69)
73 2l7p_A Histone-lysine N-methyl 73.3 0.92 3.1E-05 38.4 0.7 31 291-322 27-58 (100)
74 3k1l_B Fancl; UBC, ring, RWD, 72.6 1.9 6.6E-05 44.0 3.0 51 275-325 307-369 (381)
75 1weq_A PHD finger protein 7; s 70.3 5.3 0.00018 32.8 4.6 35 291-327 45-80 (85)
76 2l0b_A E3 ubiquitin-protein li 69.1 1.9 6.6E-05 34.4 1.7 47 276-326 40-86 (91)
77 2ct0_A Non-SMC element 1 homol 68.5 3.8 0.00013 32.4 3.3 47 275-325 14-60 (74)
78 2ep4_A Ring finger protein 24; 67.8 1.7 5.7E-05 32.9 1.1 46 277-326 16-61 (74)
79 1x4j_A Ring finger protein 38; 66.9 1.6 5.3E-05 33.3 0.7 47 277-327 24-70 (75)
80 4gne_A Histone-lysine N-methyl 65.8 5.9 0.0002 33.6 4.2 37 279-320 61-98 (107)
81 2egp_A Tripartite motif-contai 64.5 6 0.0002 29.9 3.7 48 276-327 12-63 (79)
82 2d8t_A Dactylidin, ring finger 64.5 4.3 0.00015 30.5 2.8 45 276-327 15-59 (71)
83 1v87_A Deltex protein 2; ring- 64.1 2.4 8.1E-05 34.8 1.4 34 295-328 58-93 (114)
84 2csy_A Zinc finger protein 183 61.7 2.2 7.4E-05 33.0 0.7 46 275-327 14-59 (81)
85 2ecv_A Tripartite motif-contai 60.6 4 0.00014 31.0 2.0 48 276-327 19-69 (85)
86 2ecy_A TNF receptor-associated 60.1 4.4 0.00015 29.9 2.1 46 275-326 14-59 (66)
87 1vyx_A ORF K3, K3RING; zinc-bi 59.1 3.2 0.00011 31.3 1.2 47 277-326 7-56 (60)
88 3nw0_A Non-structural maintena 56.4 5.1 0.00018 38.1 2.4 46 276-325 180-225 (238)
89 1bor_A Transcription factor PM 55.2 9.3 0.00032 27.6 3.1 42 276-327 6-47 (56)
90 2ecw_A Tripartite motif-contai 55.1 8.5 0.00029 29.1 3.0 48 276-327 19-69 (85)
91 1jm7_A BRCA1, breast cancer ty 55.0 3.2 0.00011 33.6 0.6 47 276-326 21-67 (112)
92 1v5n_A PDI-like hypothetical p 54.4 6.1 0.00021 32.2 2.2 34 277-312 48-81 (89)
93 2yur_A Retinoblastoma-binding 52.3 5.9 0.0002 30.1 1.7 48 275-326 14-61 (74)
94 1e8j_A Rubredoxin; iron-sulfur 51.3 13 0.00044 27.6 3.4 42 277-326 4-45 (52)
95 2a20_A Regulating synaptic mem 51.1 4.4 0.00015 31.4 0.8 49 277-325 10-59 (62)
96 2d8v_A Zinc finger FYVE domain 49.7 11 0.00036 29.8 2.8 31 276-327 8-38 (67)
97 2ecl_A Ring-box protein 2; RNF 48.5 4.3 0.00015 31.7 0.4 32 292-326 42-73 (81)
98 1e4u_A Transcriptional repress 48.3 11 0.00037 29.6 2.7 49 277-328 12-61 (78)
99 2kn9_A Rubredoxin; metalloprot 45.6 11 0.00038 30.6 2.4 43 275-325 26-68 (81)
100 3ztg_A E3 ubiquitin-protein li 44.8 4.4 0.00015 31.8 -0.1 48 275-326 12-59 (92)
101 2e2z_A TIM15; protein import, 43.0 4.5 0.00015 34.2 -0.3 27 276-302 13-48 (100)
102 2ea6_A Ring finger protein 4; 41.9 5.1 0.00017 29.3 -0.2 47 276-326 15-65 (69)
103 4bbq_A Lysine-specific demethy 41.7 3.8 0.00013 34.2 -1.0 33 278-324 9-41 (117)
104 3l11_A E3 ubiquitin-protein li 41.4 18 0.00061 29.5 3.1 47 276-328 15-61 (115)
105 1dx8_A Rubredoxin; electron tr 40.5 16 0.00055 28.7 2.5 43 276-326 7-49 (70)
106 2ckl_B Ubiquitin ligase protei 39.0 6.2 0.00021 34.5 -0.1 48 275-327 53-100 (165)
107 4a0k_B E3 ubiquitin-protein li 38.2 7.8 0.00027 33.2 0.4 28 296-326 82-109 (117)
108 2djb_A Polycomb group ring fin 38.1 11 0.00039 28.2 1.3 46 275-326 14-59 (72)
109 1s24_A Rubredoxin 2; electron 36.9 18 0.0006 29.8 2.3 43 275-325 34-76 (87)
110 1hp8_A HU-P8; leukemia, cystei 36.1 45 0.0015 26.3 4.4 43 365-422 5-47 (68)
111 3dpl_R Ring-box protein 1; ubi 35.8 7.8 0.00027 32.4 0.0 31 293-326 68-98 (106)
112 1t1h_A Gspef-atpub14, armadill 35.3 12 0.00042 28.2 1.1 45 276-326 8-52 (78)
113 1zbd_B Rabphilin-3A; G protein 35.0 21 0.00071 31.3 2.6 49 277-325 56-106 (134)
114 2enn_A NPKC-theta, protein kin 34.6 22 0.00074 27.8 2.5 35 275-309 33-68 (77)
115 1weo_A Cellulose synthase, cat 34.2 8.8 0.0003 32.0 0.1 49 277-328 17-69 (93)
116 2yuu_A NPKC-delta, protein kin 34.2 25 0.00087 27.7 2.8 34 276-309 28-62 (83)
117 4rxn_A Rubredoxin; electron tr 33.9 20 0.00067 27.0 2.0 13 314-326 33-45 (54)
118 4ayc_A E3 ubiquitin-protein li 33.4 10 0.00035 32.4 0.4 42 278-326 55-96 (138)
119 1ptq_A Protein kinase C delta 33.0 21 0.00073 25.1 2.0 34 276-309 11-45 (50)
120 3lrq_A E3 ubiquitin-protein li 32.8 7.4 0.00025 31.4 -0.6 47 276-327 22-68 (100)
121 2fiy_A Protein FDHE homolog; F 31.3 17 0.0006 36.0 1.7 39 276-325 182-230 (309)
122 2v3b_B Rubredoxin 2, rubredoxi 31.1 20 0.00068 26.9 1.6 13 314-326 33-45 (55)
123 3fl2_A E3 ubiquitin-protein li 29.9 8 0.00027 32.2 -0.9 46 277-328 53-98 (124)
124 1f5n_A Interferon-induced guan 29.8 1.4E+02 0.0049 31.9 8.6 39 148-186 492-530 (592)
125 2enz_A NPKC-theta, protein kin 29.3 36 0.0012 25.5 2.8 34 276-309 23-57 (65)
126 1faq_A RAF-1; transferase, ser 28.5 31 0.0011 24.4 2.2 32 276-310 14-45 (52)
127 2pk7_A Uncharacterized protein 28.2 27 0.00091 27.3 1.9 29 276-304 8-38 (69)
128 2eli_A Protein kinase C alpha 27.7 40 0.0014 26.8 3.0 34 276-309 28-62 (85)
129 2jr6_A UPF0434 protein NMA0874 27.7 25 0.00087 27.4 1.7 31 275-305 7-39 (68)
130 2js4_A UPF0434 protein BB2007; 27.4 23 0.00078 27.8 1.4 31 275-305 7-39 (70)
131 2ckl_A Polycomb group ring fin 27.2 15 0.00053 29.7 0.4 46 276-327 15-60 (108)
132 2ecn_A Ring finger protein 141 26.6 14 0.00048 27.3 0.1 42 276-325 15-56 (70)
133 2hf1_A Tetraacyldisaccharide-1 26.1 24 0.00084 27.5 1.4 29 276-304 8-38 (68)
134 2xzl_A ATP-dependent helicase 25.6 27 0.00094 38.5 2.2 27 278-306 13-39 (802)
135 2jny_A Uncharacterized BCR; st 24.3 32 0.0011 26.8 1.7 30 275-304 9-40 (67)
136 2jwo_A RAG-2, V(D)J recombinat 24.0 49 0.0017 26.8 2.8 53 270-322 6-75 (82)
137 6rxn_A Rubredoxin; electron tr 23.3 46 0.0016 24.1 2.3 13 314-326 27-39 (46)
138 2y43_A E3 ubiquitin-protein li 23.0 22 0.00075 28.2 0.6 46 276-327 22-67 (99)
139 2fnf_X Putative RAS effector N 22.9 49 0.0017 25.6 2.6 33 275-309 34-66 (72)
140 2k0a_A PRE-mRNA-splicing facto 22.9 12 0.0004 32.0 -1.1 50 277-326 30-81 (109)
141 2lk0_A RNA-binding protein 5; 22.8 31 0.0011 22.9 1.2 14 314-327 2-15 (32)
142 2vrw_B P95VAV, VAV1, proto-onc 22.6 52 0.0018 32.5 3.4 35 275-309 356-391 (406)
143 3knv_A TNF receptor-associated 22.6 14 0.00048 32.0 -0.7 47 273-325 28-74 (141)
144 1y8f_A UNC-13 homolog A, MUNC1 22.1 38 0.0013 25.5 1.8 34 276-309 24-58 (66)
145 1jm7_B BARD1, BRCA1-associated 22.1 47 0.0016 27.2 2.5 43 276-326 22-64 (117)
146 2jrp_A Putative cytoplasmic pr 20.8 33 0.0011 27.9 1.2 24 278-301 4-27 (81)
147 3uej_A NPKC-delta, protein kin 20.2 49 0.0017 24.7 2.0 34 276-309 20-54 (65)
148 1z6u_A NP95-like ring finger p 20.1 20 0.00067 31.4 -0.3 45 277-327 79-123 (150)
149 2dmi_A Teashirt homolog 3; zin 20.1 98 0.0033 24.1 3.9 56 276-331 19-94 (115)
No 1
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.45 E-value=4.2e-14 Score=119.36 Aligned_cols=65 Identities=25% Similarity=0.615 Sum_probs=52.3
Q ss_pred CCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcccCchhhHhhh
Q psy128 271 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKEKKKR 337 (446)
Q Consensus 271 ed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~~~~K~kr~k 337 (446)
..+.+++.| ||+.+++++ .||+||.|+.|||+.|++++....++.|+|+.|.+......+....+
T Consensus 23 ~~~~d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~~~~~~~q 87 (98)
T 2lv9_A 23 SYGTDVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERAVLLQ 87 (98)
T ss_dssp CCCCCBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCHHHHHHHH
T ss_pred CCCCCCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCHHHHHHHH
Confidence 344557789 999988877 89999999999999999998875556899999998776655544433
No 2
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.40 E-value=5.2e-14 Score=112.62 Aligned_cols=55 Identities=62% Similarity=1.560 Sum_probs=47.2
Q ss_pred CCCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 270 TGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 270 eed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
+++++...+|.+|+.+++++ +||+||.|+.|||+.||+++.. .+.+.|||+.|..
T Consensus 12 ~~~~~~~~~C~~C~~~~~~~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 12 DEWGNQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CSSSCEEECBTTTTBCCSSC-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred cccCCCCcCCCCCCCCCCCC-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 34455677899999998876 8999999999999999999988 4557999999984
No 3
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.37 E-value=1.1e-12 Score=109.84 Aligned_cols=55 Identities=42% Similarity=1.079 Sum_probs=44.7
Q ss_pred CCCCCCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCCc
Q psy128 268 YDTGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 268 ~eeed~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
....++++..|| +|+.++++ +||+||. |. .|||+.||+++..+ .+.|||+.|...
T Consensus 28 ~~~~d~~e~~yC-iC~~~~~g--~MI~CD~~dC~~~WfH~~CVgl~~~p-~g~W~Cp~C~~~ 85 (91)
T 1weu_A 28 DMPVDPNEPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTKP-RGKWFCPRCSQE 85 (91)
T ss_dssp SCCCCSCCCBCS-TTCCBCCS--CCCCCSCSSCSCCCCCSTTTTCSSCC-CSSCCCTTTCCC
T ss_pred cCCcCCCCCcEE-ECCCCCCC--CEeEecCCCCCCCCEecccCCcCcCC-CCCEECcCccCc
Confidence 344556678899 99998775 5999999 76 79999999987663 478999999854
No 4
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.36 E-value=1.7e-13 Score=109.17 Aligned_cols=56 Identities=32% Similarity=0.815 Sum_probs=46.4
Q ss_pred CCCCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 269 DTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 269 eeed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
+.+++.+..+| +|+.+++++.+||+||.|..|||+.||+++.. ..++.|+|+.|..
T Consensus 9 e~~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 9 ERGVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SCSSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cCCCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34456678899 99998754448999999999999999999875 4567999999984
No 5
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.34 E-value=2.7e-13 Score=107.63 Aligned_cols=54 Identities=26% Similarity=0.621 Sum_probs=45.6
Q ss_pred CCCCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 270 TGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 270 eed~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
..++.+..+| +|+++++++ +||+||.|..|||+.|+|++....++.|+|+.|..
T Consensus 13 ~~~~~~~~~C-iC~~~~~~~-~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 13 NLYFQGLVTC-FCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp -CTTTTCCCS-TTCCCCTTC-CEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred cCCCCCceEe-ECCCcCCCC-CEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3344567899 999998877 89999999999999999999874457999999974
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.31 E-value=4.4e-13 Score=108.57 Aligned_cols=56 Identities=29% Similarity=0.659 Sum_probs=46.4
Q ss_pred CCCCCCCcccccccccCCCCCCCeeecC--CCCCcccccccccCCCC------CCCcEEcCCCCCc
Q psy128 269 DTGDSKQVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEP------ETSDWFCPKCSKV 326 (446)
Q Consensus 269 eeed~~~~~~C~VCg~pdd~~~~mIqCD--~C~~WfH~~Cvg~~~~~------~~~~w~Cp~C~~k 326 (446)
+..++++..+| +|+.+++++ +||+|| .|..|||+.|||++... .+..|||+.|...
T Consensus 9 d~~~~~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 9 DPFQPEIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CSSSCCCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cccCCCCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34455678899 999997666 899999 99999999999998762 3579999999853
No 7
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.30 E-value=2.2e-13 Score=113.86 Aligned_cols=51 Identities=33% Similarity=0.972 Sum_probs=40.9
Q ss_pred CCCCCcccccccccCCCCCCCeeecCCCC---CcccccccccCCCCCCCcEEcCC-CCC
Q psy128 271 GDSKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPK-CSK 325 (446)
Q Consensus 271 ed~~~~~~C~VCg~pdd~~~~mIqCD~C~---~WfH~~Cvg~~~~~~~~~w~Cp~-C~~ 325 (446)
.++++..|| +|+.++++. ||+||.|+ .|||+.|||++..+ .+.|||+. |..
T Consensus 21 ~~~~~~~yC-iC~~~~~g~--MI~CD~c~C~~eWfH~~CVgl~~~p-~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSYGP--MVACDNPACPFEWFHYGCVGLKQAP-KGKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCS-TTTCCCSSS--EECCCSSSCSCSCEETTTSSCSSCT-TSCCCSSHHHHH
T ss_pred CCCCCCcEE-EeCCCCCCC--EEEecCCCCccccCcCccCCCCcCC-CCCccCChhhcc
Confidence 344557799 999987765 99999977 99999999998763 47999999 973
No 8
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.30 E-value=2.5e-12 Score=102.88 Aligned_cols=56 Identities=39% Similarity=1.007 Sum_probs=44.8
Q ss_pred CCCCCCCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCCc
Q psy128 267 EYDTGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 267 e~eeed~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
+..+.++++..+| +|+.++++ +||+||. |. .|||+.||+++.. +.+.|||+.|...
T Consensus 7 ~~~~~d~~~~~~C-~C~~~~~g--~MI~CD~~~C~~~wfH~~Cvgl~~~-p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 7 GDMPVDPNEPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTK-PRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCCCTTSCCCS-TTCCCSCS--SEECCSCSSCSCCCEETTTTTCSSC-CSSCCCCTTTSSC
T ss_pred cccccCCCCCCEE-ECCCCCCC--CEeEeeCCCCCCccEecccCCcCcC-CCCCEECCCCCcc
Confidence 3344555667899 99998775 5999999 77 7999999998765 3478999999854
No 9
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.29 E-value=2.4e-13 Score=109.25 Aligned_cols=50 Identities=32% Similarity=0.911 Sum_probs=42.8
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCC------CCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP------ETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~------~~~~w~Cp~C~~k 326 (446)
+..|| +|+++++++ +||+||.|..|||+.|||++... ....|+|+.|...
T Consensus 15 ~~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 46889 999998876 89999999999999999998652 3568999999843
No 10
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.29 E-value=7.5e-13 Score=102.81 Aligned_cols=52 Identities=31% Similarity=0.700 Sum_probs=43.5
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~k 326 (446)
+..+|.+|+++++++.+||+||.|..|||+.|+|++.. .....|+|+.|..+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45689999999864448999999999999999999877 23578999999854
No 11
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.26 E-value=9.3e-13 Score=98.94 Aligned_cols=48 Identities=29% Similarity=0.763 Sum_probs=42.2
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
+..+| +|+++++++ +||+||.|..|||+.|+|++....++.|+|+.|.
T Consensus 3 d~~~C-~C~~~~~~~-~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~ 50 (52)
T 3o7a_A 3 DLVTC-FCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 50 (52)
T ss_dssp TCBCS-TTCCBCTTC-CEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHH
T ss_pred cCeEE-EeCCcCCCC-CEEEcCCCCccccccccCCCcccCCCcEECcCCC
Confidence 35689 999998876 8999999999999999999987445799999996
No 12
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.25 E-value=3.2e-13 Score=108.54 Aligned_cols=55 Identities=33% Similarity=0.776 Sum_probs=45.3
Q ss_pred CCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCCC--CCCcEEcCCCCCcc
Q psy128 272 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP--ETSDWFCPKCSKVD 327 (446)
Q Consensus 272 d~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~--~~~~w~Cp~C~~k~ 327 (446)
.+.+..|| +|+.+++++.+||+||.|..|||+.|+|++... ..+.|+|+.|....
T Consensus 6 ~~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 6 MATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp TCCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CCCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 34567899 999997654489999999999999999999872 34689999998653
No 13
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.24 E-value=3.6e-12 Score=103.27 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=44.1
Q ss_pred CCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCCcc
Q psy128 274 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVD 327 (446)
Q Consensus 274 ~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~k~ 327 (446)
.+..+| +|+.+++++.+||+||.|..|||+.||+++.. ...+.|+|+.|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 346789 99999864348999999999999999999876 335799999999654
No 14
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.23 E-value=2.1e-12 Score=102.05 Aligned_cols=52 Identities=23% Similarity=0.620 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCCCCeeecCC--CCCcccccccccCCC-----CCCCcEEcCCCCC
Q psy128 272 DSKQVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVAE-----PETSDWFCPKCSK 325 (446)
Q Consensus 272 d~~~~~~C~VCg~pdd~~~~mIqCD~--C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~~ 325 (446)
+++..++| +|+.+++++ +||+||. |..|||+.|||++.. ..+..|||+.|+.
T Consensus 6 ~~e~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 6 QPEAKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CSSCEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 44557899 999987777 8999995 999999999999765 1235899999973
No 15
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.16 E-value=4e-12 Score=99.18 Aligned_cols=52 Identities=38% Similarity=1.034 Sum_probs=40.2
Q ss_pred CCCCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCC
Q psy128 270 TGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 270 eed~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
+.++++..|| +|++++++ +||+||. |. .|||+.|||++.. +.+.|||+.|..
T Consensus 5 ~~d~~e~~yC-~C~~~~~g--~MI~CD~c~C~~~WfH~~Cvgl~~~-p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 5 AIDPNEPTYC-LCNQVSYG--EMIGCDNEQCPIEWFHFSCVSLTYK-PKGKWYCPKCRG 59 (62)
T ss_dssp -----CCEET-TTTEECCS--EEEECSCTTCSSCEEETGGGTCSSC-CSSCCCCHHHHT
T ss_pred ccCCCCCcEE-ECCCCCCC--CeeeeeCCCCCcccEecccCCcCcC-CCCCEECcCccc
Confidence 3455667899 99998775 4999999 55 9999999999866 457999999974
No 16
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.15 E-value=5.2e-12 Score=97.58 Aligned_cols=50 Identities=42% Similarity=1.170 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCC
Q psy128 272 DSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 272 d~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
|+++..+| +|++++++ .||+||+ |. .|||+.|||++..+ .+.|||+.|..
T Consensus 5 d~~e~~yC-~C~~~~~g--~mi~CD~~~C~~~wfH~~Cvgl~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYG--EMIGCDNPDCPIEWFHFACVDLTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEECCS--EEEECSCTTCSSCEEETGGGTCSSCC-SSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCCCC--CeeEeeCCCCCCCCEecccCCcccCC-CCCEECcCccC
Confidence 44567799 99998765 5999999 77 79999999987763 47999999974
No 17
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.14 E-value=6e-12 Score=97.42 Aligned_cols=51 Identities=43% Similarity=1.160 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCCCCCCeeecCC--CC-CcccccccccCCCCCCCcEEcCCCCC
Q psy128 271 GDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 271 ed~~~~~~C~VCg~pdd~~~~mIqCD~--C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
.++++..+| +|++++++ .||+||+ |. .|||+.|||++.. +.+.|||+.|..
T Consensus 5 ~d~~e~~~C-~C~~~~~g--~mi~CD~cdC~~~wfH~~Cvgl~~~-p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTK-PRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEECCS--EEEECSCTTCSSCEEETGGGTCSSC-CSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcCCC--CEEEeCCCCCCCceEehhcCCCCcC-CCCCEECcCccC
Confidence 345567899 99998765 5999999 55 8999999998765 447999999974
No 18
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.2e-11 Score=98.69 Aligned_cols=49 Identities=39% Similarity=1.064 Sum_probs=41.2
Q ss_pred CCCcccccccccCCCCCCCeeecCCCC---CcccccccccCCCCCCCcEEcCCCCC
Q psy128 273 SKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 273 ~~~~~~C~VCg~pdd~~~~mIqCD~C~---~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
+++..|| +|++++++ +||+||.|+ .|||+.||+++.. +.+.|||+.|..
T Consensus 3 ~~~~~yC-~C~~~~~g--~MI~CD~cdC~~~WfH~~Cvgl~~~-p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSYG--EMVGCDNQDCPIEWFHYGCVGLTEA-PKGKWYCPQCTA 54 (70)
T ss_dssp CSCCCCS-TTSCCCCS--SEECCSCTTCSCCCEEHHHHTCSSC-CSSCCCCHHHHH
T ss_pred CCCCeEE-EcCCCCCC--CEeEeCCCCCCccCCcccccccCcC-CCCCEECCCCCc
Confidence 3456799 99998766 599999985 8999999999875 467999999984
No 19
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.12 E-value=8.5e-12 Score=93.76 Aligned_cols=48 Identities=35% Similarity=0.931 Sum_probs=39.4
Q ss_pred ccccccccCCCCCCCeeecC-CCCCcccccccccCCC-CCCCcEEcCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCD-GCDAWYHWVCVGLVAE-PETSDWFCPKCS 324 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD-~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~ 324 (446)
..|.+|++|++++.+||+|| .|+.|||+.|+|++.. ...+.|+|+.|.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 34669999987655999999 8999999999999876 223789999994
No 20
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.11 E-value=6.7e-12 Score=98.85 Aligned_cols=50 Identities=26% Similarity=0.824 Sum_probs=41.8
Q ss_pred CcccccccccCCCCCCCeeecC-CCCCcccccccccCCC-------CCCCcEEcCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCD-GCDAWYHWVCVGLVAE-------PETSDWFCPKCS 324 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD-~C~~WfH~~Cvg~~~~-------~~~~~w~Cp~C~ 324 (446)
....|.+|+++++++.+||+|| .|..|||+.|||++.. .+...|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3457999999987666999999 9999999999999975 245689999985
No 21
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.09 E-value=4.1e-11 Score=89.10 Aligned_cols=47 Identities=26% Similarity=0.767 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
+|.+|+..++++ .||.||.|+.|||+.|++++.. .+.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588999887666 8999999999999999998777 6678999999974
No 22
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.98 E-value=3.8e-10 Score=87.42 Aligned_cols=49 Identities=27% Similarity=0.789 Sum_probs=40.8
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCcc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 327 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~ 327 (446)
+..+|.+|+. ++ .||.||.|+.+||+.|+++++. .+.+.|+|+.|....
T Consensus 8 ~~~~C~vC~~---~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKD---GG-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCC---CS-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCC---CC-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3457999995 33 5999999999999999998777 677899999998643
No 23
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.97 E-value=4.9e-11 Score=108.55 Aligned_cols=52 Identities=35% Similarity=0.915 Sum_probs=42.7
Q ss_pred CCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCCc
Q psy128 274 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKV 326 (446)
Q Consensus 274 ~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~k 326 (446)
++..+| +|+.+++++.+||+||.|..|||+.|+|++.. ...+.|+|+.|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 346789 99998764448999999999999999998765 34679999999853
No 24
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.96 E-value=8.8e-11 Score=100.28 Aligned_cols=51 Identities=29% Similarity=0.829 Sum_probs=42.0
Q ss_pred cccccccccCCCCCCCeeecC-CCCCcccccccccCCC-------CCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCD-GCDAWYHWVCVGLVAE-------PETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD-~C~~WfH~~Cvg~~~~-------~~~~~w~Cp~C~~k 326 (446)
+..|.+|+++++++..||+|| .|..|||+.|||++.. .+...|+|+.|...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 457999999964444799998 9999999999999963 24479999999854
No 25
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=2e-10 Score=95.96 Aligned_cols=49 Identities=35% Similarity=0.814 Sum_probs=42.6
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
...|.||+..++.+ .||+||.|+.|||+.|+++++. .+.+.|||+.|..
T Consensus 16 ~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34699999877655 7999999999999999998877 6778999999974
No 26
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=3.6e-10 Score=87.53 Aligned_cols=47 Identities=36% Similarity=0.835 Sum_probs=40.0
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
+..+|.+|+. ++ .||.||.|+.|||+.|++++.. .+.+.|+|+.|..
T Consensus 10 ~~~~C~vC~~--~g--~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQ--GG--EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSC--CS--SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCC--CC--cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3457999996 33 5999999999999999999876 6778999999984
No 27
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.93 E-value=4.4e-11 Score=125.90 Aligned_cols=56 Identities=29% Similarity=0.681 Sum_probs=45.4
Q ss_pred CCCCcccccccccCCCCCCCeeecCCCCCcccccccccCCCC--CCCcEEcCCCCCccc
Q psy128 272 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP--ETSDWFCPKCSKVDE 328 (446)
Q Consensus 272 d~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~--~~~~w~Cp~C~~k~~ 328 (446)
.+....+| +|+.+++++.+||+||.|+.|||+.|+|++... ..+.|+|+.|.....
T Consensus 33 ~~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 33 PPPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 34557889 999997633489999999999999999998872 346899999986543
No 28
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.91 E-value=9e-10 Score=86.91 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=39.8
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k 326 (446)
...|.+|+. ++ .||+||.|+.|||++|+++++. .+.+.|||+.|...
T Consensus 12 ~~~C~vC~~--~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGD--GT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSC--CT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCC--CC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 346999984 33 4999999999999999998887 67789999999854
No 29
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.89 E-value=3.1e-10 Score=88.41 Aligned_cols=52 Identities=23% Similarity=0.618 Sum_probs=42.0
Q ss_pred CcccccccccCC--CCCCCeeecCCCCCcccccccccCCCC----CCCcEEcCCCCCcc
Q psy128 275 QVWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAEP----ETSDWFCPKCSKVD 327 (446)
Q Consensus 275 ~~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~~Cvg~~~~~----~~~~w~Cp~C~~k~ 327 (446)
....|.+|+..+ +++ .||+||.|+.|||+.|++++... +.+.|||+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~-~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPN-EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTB-CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCC-CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345799999763 234 79999999999999999998762 67899999998543
No 30
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.88 E-value=4.2e-10 Score=88.31 Aligned_cols=47 Identities=26% Similarity=0.681 Sum_probs=39.6
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k 326 (446)
..+|.+|+. . + .||.||.|+.|||+.|+++++. .+.+.|+|+.|...
T Consensus 8 ~~~C~vC~~--~-g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRD--G-G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSC--C-S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCC--C-C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 347999995 3 3 5999999999999999998877 67789999999843
No 31
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.86 E-value=4.7e-10 Score=93.01 Aligned_cols=49 Identities=22% Similarity=0.602 Sum_probs=40.5
Q ss_pred cccccccccCC--CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.+|+..+ +++ .||+||.|+.|||+.|++++. .+.+.|||+.|...
T Consensus 25 ~~~C~vC~~~~s~~~~-~ll~CD~C~~~fH~~Cl~p~~-vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 25 DAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCSSCCSSSSCSEE-EEEECSSSCCCCCHHHHTCSS-CCSSCCCCHHHHHH
T ss_pred CCcCCcCCCCCCCCCC-CEEECCCCCchhhcccCCCCc-cCCCceECccccCc
Confidence 34699999764 333 799999999999999999986 46689999999843
No 32
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=8.2e-10 Score=83.91 Aligned_cols=45 Identities=29% Similarity=0.814 Sum_probs=38.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCS 324 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~ 324 (446)
..+|.+|+.. + .||.||.|+.|||+.|+++++. .+.+.|+|+.|.
T Consensus 9 ~~~C~vC~~~--g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKS--G--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCS--S--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCccCCCC--C--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4579999963 3 5999999999999999998877 677899999996
No 33
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.86 E-value=1.1e-09 Score=87.28 Aligned_cols=47 Identities=30% Similarity=0.882 Sum_probs=40.5
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCC-cEEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETS-DWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~-~w~Cp~C~~ 325 (446)
.|.+|++.++++ .||.||.|+.|||+.|+++++. .+.+ .|+|+.|..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466889877666 8999999999999999998877 5667 999999984
No 34
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.84 E-value=6.5e-10 Score=88.89 Aligned_cols=48 Identities=23% Similarity=0.621 Sum_probs=40.2
Q ss_pred cccccccccCC--CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 276 VWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
...|.+|+..+ +++ .||+||.|+.|||+.|++++. .+.+.|||+.|..
T Consensus 16 ~~~C~vC~~~~s~~~~-~ll~CD~C~~~~H~~Cl~~~~-vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 16 DAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSCSSSCCCCCCSSS-CEEECSSSCCEEEHHHHTCSS-CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCC-CEEECCCCCCccccccCCCCc-CCCCCcCCccCcC
Confidence 34699999764 344 799999999999999999986 4668999999974
No 35
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.84 E-value=3.6e-10 Score=86.97 Aligned_cols=46 Identities=28% Similarity=0.800 Sum_probs=39.2
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
..+|.+|+.. + .||.||.|+.|||+.|++++.. .+.+.|+|+.|..
T Consensus 5 ~~~C~vC~~~--g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS--G--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC--S--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCC--C--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 3469999963 3 5999999999999999998877 6678999999974
No 36
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=2e-09 Score=87.33 Aligned_cols=47 Identities=28% Similarity=0.818 Sum_probs=41.2
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCC-cEEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETS-DWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~-~w~Cp~C~~ 325 (446)
.|.+|+..++++ .||.||.|+.+||+.|+++++. .+.+ .|||+.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999887776 8999999999999999998877 5667 999999973
No 37
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.81 E-value=1.7e-10 Score=120.41 Aligned_cols=55 Identities=31% Similarity=0.729 Sum_probs=44.7
Q ss_pred CCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCCcccC
Q psy128 274 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEG 329 (446)
Q Consensus 274 ~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~k~~~ 329 (446)
.+..|| +|+++++++.+||+||.|+.|||+.|+|++.. ...+.|+|+.|......
T Consensus 3 ~~~~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 3 SVPVYC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp CCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred CCCeEE-eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 346789 99999764348999999999999999999877 34478999999865443
No 38
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.77 E-value=2.9e-09 Score=99.90 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=40.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~ 327 (446)
..+|.+|+. +| .+|+||+|+.|||+.|++++.. .+.+.|+|+.|....
T Consensus 7 ~~~C~~C~~--~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQN--GG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCC--CE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCC--CC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456999994 33 4999999999999999998887 677899999999654
No 39
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.75 E-value=1.3e-09 Score=101.67 Aligned_cols=52 Identities=33% Similarity=0.788 Sum_probs=41.9
Q ss_pred cccccccCCCCCC---CeeecCCCCCcccccccccCCC--------CCCCcEEcCCCCCcccC
Q psy128 278 ICPACGVQDDGSL---PMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVDEG 329 (446)
Q Consensus 278 ~C~VCg~pdd~~~---~mIqCD~C~~WfH~~Cvg~~~~--------~~~~~w~Cp~C~~k~~~ 329 (446)
+|++|+++++++. .||+||.|+.|||+.|+|++.. +....|+|+.|......
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 6999999886653 4999999999999999999763 11237999999976554
No 40
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.75 E-value=1.7e-09 Score=89.51 Aligned_cols=52 Identities=19% Similarity=0.570 Sum_probs=42.6
Q ss_pred CcccccccccCCCC-CCCeeecCCCCCcccccccccCCC-----CCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~~k 326 (446)
...+|.+|+..+.. +..||+||.|+.+||+.|+++++. .+.+.|||+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 34579999986542 126999999999999999999886 57889999999843
No 41
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.70 E-value=1.6e-08 Score=84.26 Aligned_cols=47 Identities=23% Similarity=0.673 Sum_probs=40.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k 326 (446)
..+|.+|+.. + .+|+||.|+..||+.|+.++.. .+.+.|+|+.|...
T Consensus 25 ~~~C~vC~~~--g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP--G--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS--S--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCcCcCcCCC--C--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3479999953 3 4999999999999999998887 67889999999854
No 42
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.68 E-value=7.3e-09 Score=84.11 Aligned_cols=47 Identities=32% Similarity=0.897 Sum_probs=40.3
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCc-EEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSD-WFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~-w~Cp~C~~ 325 (446)
.|.+|+..++++ .||+||.|+.+||++|+++++. .+.+. |+|+.|..
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577888877766 8999999999999999998887 56667 99999974
No 43
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.65 E-value=1.5e-08 Score=93.25 Aligned_cols=47 Identities=21% Similarity=0.666 Sum_probs=40.1
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCcc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 327 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~ 327 (446)
.+|.+|+. +| .+|+||.|+.|||..|++++.. .+.+.|+|+.|....
T Consensus 5 ~~C~~C~~--~g--~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQN--GG--ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCC--CS--SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCC--CC--eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46999994 34 4999999999999999998887 677899999999654
No 44
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=98.08 Aligned_cols=49 Identities=31% Similarity=0.863 Sum_probs=38.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCC-cEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETS-DWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~-~w~Cp~C~~ 325 (446)
.+.|.+|+..++++ .||+||.|+.|||+.|+++++. .+.+ .|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 34699999887776 8999999999999999999888 5667 999999974
No 45
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.58 E-value=1.3e-08 Score=87.54 Aligned_cols=47 Identities=30% Similarity=0.824 Sum_probs=41.2
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
+|.+|+..++++ .||.||.|+.|||+.|+++++. .+.+.|+|+.|..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 588899877666 7999999999999999998877 6778999999973
No 46
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.53 E-value=5.2e-08 Score=83.52 Aligned_cols=48 Identities=27% Similarity=0.654 Sum_probs=39.5
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
+|.+|+..++++..+|.||.|+.+||++|+++++. .+.+.|+|+.|..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788865332227999999999999999998877 6778999999985
No 47
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.48 E-value=5.2e-08 Score=83.71 Aligned_cols=45 Identities=33% Similarity=0.823 Sum_probs=36.2
Q ss_pred CcccccccccCCCCCCCeeecC--CCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD--~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
+..+|.+|+. +| .||+|| .|+.|||+.|+++.. .+.+.|||+.|.
T Consensus 14 ~~~~C~~C~~--~G--~ll~CD~~~Cp~~fH~~Cl~L~~-~P~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD--GG--ELVMCDKKDCPKAYHLLCLNLTQ-PPYGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC--CS--EEEECCSTTCCCEECTGGGTCSS-CCSSCCCCGGGB
T ss_pred CCCCCCcCCC--CC--cEeEECCCCCCcccccccCcCCc-CCCCCEECCCCC
Confidence 3457988982 44 499999 899999999999654 466899999875
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.44 E-value=5.9e-08 Score=82.58 Aligned_cols=48 Identities=33% Similarity=0.803 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 326 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k 326 (446)
+|.+|+..++++ .||.||.|+.|||+.|+++++. .+.+.|+|+.|...
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 577898877666 8999999999999999998877 67789999999754
No 49
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.38 E-value=1.6e-07 Score=87.43 Aligned_cols=46 Identities=24% Similarity=0.703 Sum_probs=39.5
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCCcc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 327 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k~ 327 (446)
+|.+|+. +| .+|+||+|+.+||..|+.++.. .+.+.|+|+.|....
T Consensus 4 ~C~~C~~--~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQK--PG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCC--CS--SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCC--CC--ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 6999994 33 4999999999999999998877 677899999998654
No 50
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.32 E-value=1.4e-07 Score=99.99 Aligned_cols=45 Identities=36% Similarity=0.911 Sum_probs=36.1
Q ss_pred cccCCCCCCCeeecCCCCCcccccccccCCC--CCCCcEEcCCCCCc
Q psy128 282 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKV 326 (446)
Q Consensus 282 Cg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~k 326 (446)
+..+.+++.+||+||.|+.|||+.|||++.. ...+.|+||.|...
T Consensus 48 ~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 48 SHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred cccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 3333344559999999999999999999987 34579999999864
No 51
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.02 E-value=3.6e-06 Score=71.49 Aligned_cols=47 Identities=26% Similarity=0.712 Sum_probs=39.5
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCS 324 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~ 324 (446)
.+|.+|+...+.+ .||.|+.|...||..|++++.. ...+.|+|+.|.
T Consensus 8 ~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3699999865544 5899999999999999999877 456799999986
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.95 E-value=3.2e-06 Score=76.00 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=40.9
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCC--------CCCCcEEcCCCCCccc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVDE 328 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--------~~~~~w~Cp~C~~k~~ 328 (446)
...+|.+|+. ++ .+|+||.|.+.||..|+.++.. .+.+.|+|+.|.....
T Consensus 62 ~~d~C~vC~~---GG-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 62 MDEQCRWCAE---GG-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp CBCSCSSSCC---CS-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred CCCeecccCC---CC-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH
Confidence 4568999993 44 4999999999999999997775 3678999999986543
No 53
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.78 E-value=1.5e-05 Score=73.92 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=36.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC-----CCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~~k~ 327 (446)
..+| .||.+.+-+..||+|+.|..|||..|+..... .....|.|..|....
T Consensus 5 ~~yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 5 AGSV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred eeEE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 4589 99998777779999999999999999986553 224478999998754
No 54
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.78 E-value=4.5e-06 Score=71.03 Aligned_cols=38 Identities=34% Similarity=0.852 Sum_probs=30.8
Q ss_pred CeeecCCCCCcccccccccCCC--------CCCCcEEcCCCCCccc
Q psy128 291 PMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVDE 328 (446)
Q Consensus 291 ~mIqCD~C~~WfH~~Cvg~~~~--------~~~~~w~Cp~C~~k~~ 328 (446)
.||+||.|..|||..|++++.. +....|.|+.|.....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 3999999999999999999752 3344799999986543
No 55
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.54 E-value=2.1e-05 Score=69.69 Aligned_cols=51 Identities=24% Similarity=0.517 Sum_probs=40.3
Q ss_pred CCcccccccccCCCCCCCeeecCCCCCcccccccccCCC--------CCCCcEEcCCCCCccc
Q psy128 274 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVDE 328 (446)
Q Consensus 274 ~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~--------~~~~~w~Cp~C~~k~~ 328 (446)
....+|.+|+ +|+ .+|+||.|.+.||..|+.++.. .+.+.|+|..|.....
T Consensus 55 g~~~~C~vC~---dGG-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 55 GMDEQCRWCA---EGG-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp SCBSSCTTTC---CCS-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCcCeecC---CCC-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3456799999 344 4999999999999999987632 2578999999986544
No 56
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.50 E-value=3.4e-05 Score=65.71 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=33.0
Q ss_pred ccccCCCCCCCeeecCCCCCcccccccccCCC-----CCCCcEEcCCCCCcc
Q psy128 281 ACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKVD 327 (446)
Q Consensus 281 VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-----~~~~~w~Cp~C~~k~ 327 (446)
.|....+.+..||+|+.|+.|||..|+++... ..++.|+|+.|.+..
T Consensus 64 ~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 64 QNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp CHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred ccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 34333333337999999999999999998765 234569999998653
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.45 E-value=2.4e-05 Score=66.88 Aligned_cols=47 Identities=26% Similarity=0.582 Sum_probs=36.6
Q ss_pred ccccccccCC------CCCCCeeecCCCCCcccccccccCCC----CCCCcEEcCCCC
Q psy128 277 WICPACGVQD------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCS 324 (446)
Q Consensus 277 ~~C~VCg~pd------d~~~~mIqCD~C~~WfH~~Cvg~~~~----~~~~~w~Cp~C~ 324 (446)
.+|.+|...+ +++ .||.|+.|+.+||.+|+++... ...+.|+|+.|.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~-~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPE-ELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCC-CCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCch-hceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4688997642 233 6999999999999999987432 345689999997
No 58
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.21 E-value=4.8e-05 Score=65.23 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=36.0
Q ss_pred cccccccCC-------CCCCCeeecCCCCCcccccccccCCC----CCCCcEEcCCCC
Q psy128 278 ICPACGVQD-------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCS 324 (446)
Q Consensus 278 ~C~VCg~pd-------d~~~~mIqCD~C~~WfH~~Cvg~~~~----~~~~~w~Cp~C~ 324 (446)
+|.+|...+ +++ .||.|+.|...||.+|+++... .+.+.|+|+.|.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~-~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPE-ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCC-CCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCC-CCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 688897543 233 7999999999999999998743 345689999885
No 59
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.87 E-value=0.0045 Score=51.18 Aligned_cols=47 Identities=23% Similarity=0.604 Sum_probs=36.6
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccC------------CC-CCCCcEEcCCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV------------AE-PETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~------------~~-~~~~~w~Cp~C~~ 325 (446)
..|.||..-..++ ++.|..|.+.||..|+... +. ....-|.|+.|..
T Consensus 16 ~~C~VC~~~t~~~--l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 16 EMCDVCEVWTAES--LFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCTTTCCCCSSC--CSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cccCccccccccc--eeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3699999765555 9999999999999998653 11 2456899999974
No 60
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=92.19 E-value=0.048 Score=49.80 Aligned_cols=51 Identities=22% Similarity=0.510 Sum_probs=39.7
Q ss_pred CcccccccccCCCCCCCeeecC--CCCCcccccccccCCC-------CCCCcEEcCCCCCcccC
Q psy128 275 QVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVDEG 329 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD--~C~~WfH~~Cvg~~~~-------~~~~~w~Cp~C~~k~~~ 329 (446)
-..||.+|+. |+ .+|.|| .|.+.|-..|+..... ...+.|.|..|.+....
T Consensus 78 ~~~yC~wC~~---Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~ 137 (159)
T 3a1b_A 78 YQSYCTICCG---GR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTY 137 (159)
T ss_dssp SBSSCTTTSC---CS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEE
T ss_pred CcceeeEecC---CC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHH
Confidence 3668999994 44 599999 7999999999765444 34578999999987643
No 61
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=91.11 E-value=0.072 Score=54.73 Aligned_cols=53 Identities=23% Similarity=0.604 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCCCCCeeecC--CCCCcccccccccCCC-------CCCCcEEcCCCCCcccC
Q psy128 273 SKQVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVDEG 329 (446)
Q Consensus 273 ~~~~~~C~VCg~pdd~~~~mIqCD--~C~~WfH~~Cvg~~~~-------~~~~~w~Cp~C~~k~~~ 329 (446)
+....||.+|+. |+ .+|.|| .|.+.|-..|+..... ...+.|.|..|.+....
T Consensus 90 DG~~~yCr~C~~---Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~ 151 (386)
T 2pv0_B 90 DGYQSYCSICCS---GE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRS 151 (386)
T ss_dssp SSSBCSCTTTCC---CS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEE
T ss_pred CCCcccceEcCC---CC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcchH
Confidence 445679999994 44 599999 8999999999876654 23468999999987643
No 62
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.60 E-value=0.75 Score=34.61 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=32.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||.....+- .+. .|+-.||..|+..-.........||.|+..
T Consensus 20 ~~~C~IC~~~~~~~--~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKP--VTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSE--EEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCe--EEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCc
Confidence 45799999754432 222 799889999986544322346789999854
No 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.65 E-value=0.78 Score=32.66 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=31.5
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
..|.||......+...+....|+-.||..|+..-... ...||.|+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---CCcCcCCCC
Confidence 3599998765443244555579999999998654332 357999984
No 64
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.95 E-value=0.38 Score=36.07 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=30.4
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||......+ ..+..-.|+-.||..|+..-... ...||.|+..
T Consensus 14 ~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVD 60 (69)
T ss_dssp CCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSB
T ss_pred CCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCcc
Confidence 44699998655433 23344469999999998643221 2359999854
No 65
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.61 E-value=1 Score=34.47 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=30.8
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
...|.||....... ..+.--.|.-.||..|+..-.. ....||.|+...
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~---~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLE---QHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHT---TTCSCTTTCCCC
T ss_pred CCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHH---cCCcCcCcCCcc
Confidence 34699998755443 2222235888999999864332 135799998654
No 66
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.72 E-value=0.8 Score=35.57 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=32.5
Q ss_pred cccccccccCCCCCCC-eeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLP-MIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~-mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||.....++.. .+.- .|+-.||..|+.--.........||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 4569999876554312 2332 699999999986433312235789999864
No 67
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=79.55 E-value=0.83 Score=37.33 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=24.9
Q ss_pred CcccccccccCCCCCCCeeecCC--CCCcccccccc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVG 308 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~--C~~WfH~~Cvg 308 (446)
|...|.+|+....|- .|+|.. |..+||..|..
T Consensus 16 ~~l~C~iC~~~~~GA--ciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 16 WKLTCYLCKQKGVGA--SIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCBTTTTBCCSSC--EEECSCTTTCCEEEHHHHH
T ss_pred hcCCCcCCCCCCCcE--eEecCCCCCCCcCcHHHHH
Confidence 445799998653344 899986 99999999953
No 68
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.09 E-value=1.7 Score=30.99 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=28.6
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 323 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C 323 (446)
...|.||.....+. .++ .|+-.||..|+..-.........||.|
T Consensus 15 ~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45699998765544 333 588889999986543321235678877
No 69
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.22 E-value=1.4 Score=35.23 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=30.3
Q ss_pred cccccccCCCCCCCeee---cCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 278 ICPACGVQDDGSLPMIG---CDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIq---CD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
.|.||...++.+..+|. |.++..+||..|+..=... .+...||.|.....
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEFI 69 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBCC
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCeee
Confidence 59999865443324553 2233489999998532221 12358999986543
No 70
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.73 E-value=1.2 Score=32.75 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=27.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 323 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C 323 (446)
...|.||.....+- .+. .|+-.||..|+.--.........||.|
T Consensus 20 ~~~C~IC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP--VTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC--EEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCe--EEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45699998654433 333 788889999975432211234578876
No 71
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=75.14 E-value=0.93 Score=32.16 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=31.1
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
..|.||.....++...+..-.|+-.||..|+..-... ...||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH---TCCCTTSCCS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc---CCcCCCCCCc
Confidence 4699998764332134556679999999998643221 1579999854
No 72
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=73.93 E-value=2.6 Score=33.26 Aligned_cols=30 Identities=17% Similarity=0.591 Sum_probs=20.0
Q ss_pred CeeecC--CCCCcccccccccCCCCCCCcEEcC
Q psy128 291 PMIGCD--GCDAWYHWVCVGLVAEPETSDWFCP 321 (446)
Q Consensus 291 ~mIqCD--~C~~WfH~~Cvg~~~~~~~~~w~Cp 321 (446)
.||||| .|..|=-+. .++.....++.|+|.
T Consensus 17 ~WVQCd~p~C~KWR~LP-~~~~~~~lpd~W~C~ 48 (69)
T 2e61_A 17 VWVQCSFPNCGKWRRLC-GNIDPSVLPDNWSCD 48 (69)
T ss_dssp CEEECSSTTTCCEEECC-SSCCTTTSCTTCCGG
T ss_pred eEEEeCccccCcccCCc-cccccccCCCcCEeC
Confidence 699999 999996542 222222234689995
No 73
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=73.31 E-value=0.92 Score=38.40 Aligned_cols=31 Identities=29% Similarity=0.769 Sum_probs=21.2
Q ss_pred CeeecCCCCCcccccccccCCC-CCCCcEEcCC
Q psy128 291 PMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPK 322 (446)
Q Consensus 291 ~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~ 322 (446)
.|||||.|..|=-+. .++... ..++.|+|..
T Consensus 27 ~WVQCD~C~KWRrLP-~~~~~~~~~pd~W~C~m 58 (100)
T 2l7p_A 27 AWVRCDDCFKWRRIP-ASVVGSIDESSRWICMN 58 (100)
T ss_dssp EEEECTTTCCEEEEC-HHHHTTSTTSSCCCGGG
T ss_pred eEEeeCCCCccccCC-hhHccccCCCCCceeCC
Confidence 699999999997664 222221 2347899954
No 74
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=72.61 E-value=1.9 Score=44.01 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=32.7
Q ss_pred CcccccccccCCC--CCCCeeecC--CCCCcccccccccCC-----C---CCCCcEEcCCCCC
Q psy128 275 QVWICPACGVQDD--GSLPMIGCD--GCDAWYHWVCVGLVA-----E---PETSDWFCPKCSK 325 (446)
Q Consensus 275 ~~~~C~VCg~pdd--~~~~mIqCD--~C~~WfH~~Cvg~~~-----~---~~~~~w~Cp~C~~ 325 (446)
....|.||-.... +...-..|+ .|+.-||..|+.-=. . ...-.--||.|+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 3556999975332 332445799 799999999984311 1 1122456999984
No 75
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.26 E-value=5.3 Score=32.80 Aligned_cols=35 Identities=26% Similarity=0.626 Sum_probs=28.5
Q ss_pred CeeecCCCC-CcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 291 PMIGCDGCD-AWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 291 ~mIqCD~C~-~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
.+|.|..|. ..-|..|..+.. ....|.|..|....
T Consensus 45 ~L~lC~~Cgs~gtH~~Cs~l~~--~~~~weC~~C~~v~ 80 (85)
T 1weq_A 45 RLILCATCGSHGTHRDCSSLRP--NSKKWECNECLPAS 80 (85)
T ss_dssp BCEECSSSCCCEECSGGGTCCT--TCSCCCCTTTSCCS
T ss_pred EEEeCcccCCchhHHHHhCCcC--CCCCEECCcCcccc
Confidence 689999999 889999998753 34579999999643
No 76
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.09 E-value=1.9 Score=34.40 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=30.4
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||......+ ..+..-.|+-.||..|+..-.. ....||.|+..
T Consensus 40 ~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~ 86 (91)
T 2l0b_A 40 EMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQ---KSGTCPVCRCM 86 (91)
T ss_dssp CSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHT---TTCBCTTTCCB
T ss_pred CCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHH---cCCcCcCcCcc
Confidence 34699998654433 2333334999999999864333 13489999854
No 77
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.47 E-value=3.8 Score=32.42 Aligned_cols=47 Identities=26% Similarity=0.553 Sum_probs=32.9
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
.+..|.||......+ +.|..|+.-||..|+.-=.... ..=.||.|..
T Consensus 14 ~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~-~~~~CP~Cr~ 60 (74)
T 2ct0_A 14 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN-AEPRCPHCND 60 (74)
T ss_dssp SSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTC-SSCCCTTTCS
T ss_pred CCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhc-CCCCCCCCcC
Confidence 355799999765433 5788999999999997433311 1246999984
No 78
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.77 E-value=1.7 Score=32.89 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
..|.||..........+.. .|.-.||..|+..-... ...||.|+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~ 61 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV---RKVCPLCNMP 61 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH---CSBCTTTCCB
T ss_pred CCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc---CCcCCCcCcc
Confidence 4699998765443233332 48989999998643221 1379999854
No 79
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.93 E-value=1.6 Score=33.31 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=31.0
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
..|.||....... ..+..-.|+-.||..|+..-... ...||.|+...
T Consensus 24 ~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADS 70 (75)
T ss_dssp CEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCC
T ss_pred CCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcC
Confidence 4699998655443 34444568989999998643221 24799998543
No 80
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=65.79 E-value=5.9 Score=33.60 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=28.6
Q ss_pred ccccccCCCCCCCeeecCCCCCcccccccccCCC-CCCCcEEc
Q psy128 279 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFC 320 (446)
Q Consensus 279 C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~C 320 (446)
|.+|++. ..+.|..|...||..|+...+. .+.+.|+|
T Consensus 61 C~~C~k~-----~~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 61 CDECSSA-----AVSFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CTTTCSB-----CCEECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCC-----CCcCcCCCCcchhhhccCCcceecCCCCcee
Confidence 4456653 2489999999999999988776 56678887
No 81
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=64.51 E-value=6 Score=29.90 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=32.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCC----CCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP----ETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~----~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+- .++ .|+-.||..|+.--... ......||.|+...
T Consensus 12 ~~~C~IC~~~~~~p-~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEP-LSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSC-CCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCe-eEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 35699998765443 233 58888999998644331 13468999998654
No 82
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.49 E-value=4.3 Score=30.51 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=29.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+. +.. .|+-.||..|+.--.. ....||.|+...
T Consensus 15 ~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASW---LGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTT---CSSBCSSSCCBC
T ss_pred CCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHH---CCCcCcCcCchh
Confidence 34699998654332 222 5888899999864332 136899998643
No 83
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=64.09 E-value=2.4 Score=34.77 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=23.3
Q ss_pred cCCCCCcccccccccCCC--CCCCcEEcCCCCCccc
Q psy128 295 CDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDE 328 (446)
Q Consensus 295 CD~C~~WfH~~Cvg~~~~--~~~~~w~Cp~C~~k~~ 328 (446)
.-.|+-+||..|+..-.. .......||.|+....
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 456999999999864332 1124578999986543
No 84
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.74 E-value=2.2 Score=32.99 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=30.3
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
....|.||.....+- .+ -.|+-.||..|+.--.. ....||.|+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~--~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNP--VV--TKCRHYFCESCALEHFR---ATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSE--EE--CTTSCEEEHHHHHHHHH---HCSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCe--eE--ccCCCHhHHHHHHHHHH---CCCcCCCcCccc
Confidence 345799998755432 22 36888999999854322 135799998553
No 85
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.62 E-value=4 Score=31.01 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=31.5
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC---CCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~---~~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+- .++ .|+-.||..|+..-.. .......||.|+...
T Consensus 19 ~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 19 EVTCPICLELLTQP-LSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCSCCSSC-BCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCcccCCc-eeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 35699999765443 222 6888899999864322 123367899998543
No 86
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.14 E-value=4.4 Score=29.92 Aligned_cols=46 Identities=15% Similarity=0.383 Sum_probs=30.8
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
....|.||.....+. .++ .|+-.||..|+.--.. .....||.|+..
T Consensus 14 ~~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-KQT---ECGHRFCESCMAALLS--SSSPKCTACQES 59 (66)
T ss_dssp CCEECTTTCCEESSC-CCC---SSSCCCCHHHHHHHHT--TSSCCCTTTCCC
T ss_pred cCCCCCCCChHhcCe-eEC---CCCCHHHHHHHHHHHH--hCcCCCCCCCcC
Confidence 346799998765444 232 6888899999864432 234679999854
No 87
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=59.11 E-value=3.2 Score=31.26 Aligned_cols=47 Identities=21% Similarity=0.466 Sum_probs=29.1
Q ss_pred ccccccccCCCCCCCeeecCCCC---CcccccccccCCCCCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~---~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
..|.||....++. ...-| .|. .|+|..|+.-=.. ..+...|+.|...
T Consensus 7 ~~CrIC~~~~~~~-l~~PC-~C~gs~~~~H~~Cl~~W~~-~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 7 PVCWICNEELGNE-RFRAC-GCTGELENVHRSCLSTWLT-ISRNTACQICGVV 56 (60)
T ss_dssp CEETTTTEECSCC-CCCSC-CCSSGGGSCCHHHHHHHHH-HHTCSBCTTTCCB
T ss_pred CEeEEeecCCCCc-eecCc-CCCCchhhhHHHHHHHHHH-hCCCCccCCCCCe
Confidence 4699998654444 33334 454 4999999853322 1124789999854
No 88
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=56.36 E-value=5.1 Score=38.13 Aligned_cols=46 Identities=26% Similarity=0.562 Sum_probs=33.3
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
+..|.+|...-..+ +.|..|+.-||..|+.--.. ....-.||.|..
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~-~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQ-SNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTT-TCSSCBCTTTCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHH-hCCCCCCCCCCC
Confidence 56799999754433 78999999999999964322 112457999974
No 89
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.15 E-value=9.3 Score=27.62 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=27.8
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+- .++ .|+-.|+..|+.. ....||.|+...
T Consensus 6 ~~~C~IC~~~~~~p-~~l---~CgH~fC~~Ci~~------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 6 FLRCQQCQAEAKCP-KLL---PCLHTLCSGCLEA------SGMQCPICQAPW 47 (56)
T ss_dssp CSSCSSSCSSCBCC-SCS---TTSCCSBTTTCSS------SSSSCSSCCSSS
T ss_pred CCCceEeCCccCCe-EEc---CCCCcccHHHHcc------CCCCCCcCCcEe
Confidence 45699998765543 333 3666788888754 246799998543
No 90
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.09 E-value=8.5 Score=29.14 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=31.3
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCC---CCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~---~~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+. ++ . .|+-.||..|+..-.. .......||.|+...
T Consensus 19 ~~~C~IC~~~~~~p--~~-~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEP--VS-A-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSC--EE-C-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCcc--ee-C-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 35799998765443 22 2 4888899999854322 123468999998543
No 91
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.02 E-value=3.2 Score=33.64 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=31.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||.....+- ..+ .|+..||..|+.--.....+.+.||.|...
T Consensus 21 ~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKEP-VST---KCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSSC-CBC---TTSCCCCSHHHHHHHHSSSSSCCCTTTSCC
T ss_pred CCCCcccChhhcCe-EEC---CCCCHHHHHHHHHHHHhCCCCCCCcCCCCc
Confidence 34699998755443 222 688899999986433322345789999854
No 92
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=54.39 E-value=6.1 Score=32.16 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.9
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE 312 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~ 312 (446)
..|.+|+... .+ +.-.|..|+...|..|+..+..
T Consensus 48 ~~C~~C~~~~-~~-~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 48 YTCDKCEEEG-TI-WSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCCC-CS-CEEECTTTCCCCCHHHHHCSSC
T ss_pred eEeCCCCCcC-CC-cEEEcCCCCCeEcHHhcCCCCc
Confidence 5799999863 33 5677999999999999876544
No 93
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=52.32 E-value=5.9 Score=30.10 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=31.3
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
....|.||.....+- +.-..|+-.||..|+.--... .+...||.|+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHH-SSSSCCSSSCCS
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHh-cCCCcCCCCCCc
Confidence 356799998654433 333458889999998543321 124689999864
No 94
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=51.29 E-value=13 Score=27.60 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=23.1
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
..|.+||-.++..... --++..-|..-...+++|.||.|...
T Consensus 4 y~C~~CGyvYd~~~Gd--------p~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGD--------PDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSCCCCCTTTCC--------TTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCCeEEcCCcCC--------cccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4688888666532000 11233333333334568999999853
No 95
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=51.10 E-value=4.4 Score=31.39 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=34.2
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCC-CCCCCcEEcCCCCC
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVA-EPETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~-~~~~~~w~Cp~C~~ 325 (446)
..|.+|.+.-..+..--.|-.|..-+-..|-|-.. ......|.|..|..
T Consensus 10 ~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 10 PTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred chhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 46999987543221345788999888888876433 34455899999974
No 96
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=49.73 E-value=11 Score=29.79 Aligned_cols=31 Identities=29% Similarity=0.889 Sum_probs=20.3
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
..+|.||+. +- .|.|-+|+. +.||..|-...
T Consensus 8 ~pWC~ICne---DA--tlrC~gCdg----------------DLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNE---DA--TLRCAGCDG----------------DLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCS---CC--CEEETTTTS----------------EEECSSHHHHH
T ss_pred CCeeEEeCC---CC--eEEecCCCC----------------ceehHHHHHHH
Confidence 346778984 23 578888865 47777776433
No 97
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.47 E-value=4.3 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=22.1
Q ss_pred eeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 292 MIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 292 mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
.+.--.|+-.||..|+..=... .-.||.|+..
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQD 73 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCB
T ss_pred EEEeCCCCCccChHHHHHHHHh---CCCCCCcCCC
Confidence 3444479999999998754331 2389999854
No 98
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=48.27 E-value=11 Score=29.61 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=30.9
Q ss_pred ccccccccCCC-CCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 277 WICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 277 ~~C~VCg~pdd-~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
..|+||..+.. .+...+.| .|+--|+..|+.-... .+.+.||.|+....
T Consensus 12 ~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~--~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT--DENGLCPACRKPYP 61 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT--SSCSBCTTTCCBCS
T ss_pred CcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh--cCCCCCCCCCCccC
Confidence 46999987653 22122333 5787788888753322 24689999996543
No 99
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=45.65 E-value=11 Score=30.60 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=24.8
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
....|.+||-.+++....- -.+..-|......+++|.||.|..
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp--------~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWP--------EDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBT--------TTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCc--------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 3577999997665431111 122333333333456899999985
No 100
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=44.82 E-value=4.4 Score=31.80 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=30.0
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
....|.||.....+- +....|+-.|+..|+.--.. ..+.+.||.|+..
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~-~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALL-ESDEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHH-HCTTCCCTTTCCS
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHH-hcCCCcCcCCCCc
Confidence 346799999655433 22233888888888753322 1124789999954
No 101
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=42.97 E-value=4.5 Score=34.24 Aligned_cols=27 Identities=19% Similarity=0.572 Sum_probs=20.5
Q ss_pred ccccccccc---------CCCCCCCeeecCCCCCcc
Q psy128 276 VWICPACGV---------QDDGSLPMIGCDGCDAWY 302 (446)
Q Consensus 276 ~~~C~VCg~---------pdd~~~~mIqCD~C~~Wf 302 (446)
.+.|.+|+. .+..+..+|+|++|..|+
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEE
T ss_pred EEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccce
Confidence 567999984 334556899999999974
No 102
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.87 E-value=5.1 Score=29.32 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=29.8
Q ss_pred cccccccccCCCC----CCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDG----SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~----~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||.....+ + ..+..-.|+-.||..|+..-... ...||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTT-CCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCC
T ss_pred CCCCcccCcccccccccc-CCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCc
Confidence 3469999864321 2 23445678889999998542221 2369999854
No 103
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=41.73 E-value=3.8 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.1
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCC
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 324 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~ 324 (446)
.|.+|++. -|+.|...||..|+|.+ .|.|..|.
T Consensus 9 ~C~~C~~~--------~C~~C~~c~~~~~~~~~------~~~~~~c~ 41 (117)
T 4bbq_A 9 KCKACVQG--------ECGVCHYCRDMKKFGGP------GRMKQSCV 41 (117)
T ss_dssp CSHHHHSC--------CCSCSHHHHHSGGGTSC------CCSCCCCG
T ss_pred cCcCcCCc--------CCCCCCCCcCCcccCCC------Cccccchh
Confidence 46677764 29999999999999875 36676665
No 104
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=41.39 E-value=18 Score=29.55 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=31.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
...|.||......- .+. .|+-.||..|+.--.. .+.+.||.|+....
T Consensus 15 ~~~C~iC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP--VTL--PCNHTLCKPCFQSTVE--KASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC--EEC--TTSCEECHHHHCCCCC--TTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce--eEc--CCCCHHhHHHHHHHHh--HCcCCCCCCCcccC
Confidence 46799998655443 222 6888888889864433 23578999996543
No 105
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.49 E-value=16 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=23.1
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.+|+-.+++.... --+...-|..-...+++|.||.|...
T Consensus 7 ~y~C~vCGyiYd~~~Gd--------p~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGD--------KFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCC--------TTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCC--------cccCcCCCCchhhCCCCCcCCCCCCC
Confidence 45688888655443111 11222333332334568999999853
No 106
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=39.00 E-value=6.2 Score=34.55 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=33.0
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
....|.||.....+ .+.+-.|+..||..|+.--.. .+...||.|....
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALR--SGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH--TTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH--hCcCCCCCCCCcC
Confidence 34579999865433 455568999999999854332 1257899999654
No 107
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=38.23 E-value=7.8 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=0.0
Q ss_pred CCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 296 DGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 296 D~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
-.|+-.||..|+..=+.. .-.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT---RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CCcCceEcHHHHHHHHHc---CCcCCCCCCe
Confidence 368999999998654331 3569999843
No 108
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.06 E-value=11 Score=28.16 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
....|.||.....+ .+....|+-.||..|+.--.. ....||.|+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~ 59 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFY---YSNRCPKCNIV 59 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHH---HCSSCTTTCCC
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHH---cCCcCCCcCcc
Confidence 35679999865443 233457888899999753222 13579999854
No 109
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.87 E-value=18 Score=29.82 Aligned_cols=43 Identities=33% Similarity=0.612 Sum_probs=24.4
Q ss_pred CcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
....|.+||-.+++.... --++..-|......+++|.||.|..
T Consensus 34 ~~y~C~vCGyvYD~~~Gd--------p~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGD--------EAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCC--------TTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCC--------cccCcCCCCChhHCCCCCCCCCCCC
Confidence 357799999655543111 1123333333333456899999985
No 110
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=36.11 E-value=45 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=30.2
Q ss_pred chhhhhHHhHHHHhhhccccccCCCChhhhhcCCChhhHHHHHhHHHhccccCccccc
Q psy128 365 SACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDTRQ 422 (446)
Q Consensus 365 ~SC~~iredLa~CLleSdC~~~~~~t~keCL~~~lp~eC~~l~~~f~eCKR~llD~r~ 422 (446)
.+|+..+.++..||... .-....|+.+.++|.+|++..++.|+
T Consensus 5 dPC~~~AcaiQ~CL~~N---------------~yd~skCq~~id~L~eCc~~~~~~~S 47 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQAN---------------SYMESKCQAVIQELRKCCAQYPKGRS 47 (68)
T ss_dssp CTTHHHHHHHHHHHHHT---------------TTCHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CchHHHHHHHHHHHHHc---------------CCcHHHHHHHHHHHHHHHHHHccCCC
Confidence 35666666666555544 01256999999999999998887765
No 111
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=35.75 E-value=7.8 Score=32.36 Aligned_cols=31 Identities=16% Similarity=0.492 Sum_probs=21.7
Q ss_pred eecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 293 IGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 293 IqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
+.--.|+-.||..|+..=+. ....||.|+..
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLK---TRQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHT---TCSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHHH---cCCcCcCCCCc
Confidence 33346999999999865433 13579999854
No 112
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=35.34 E-value=12 Score=28.21 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||.....+- .+. .|+..|+..|+.--.. .+...||.|...
T Consensus 8 ~~~C~IC~~~~~~P--v~~--~CgH~fc~~Ci~~~~~--~~~~~CP~C~~~ 52 (78)
T 1t1h_A 8 YFRCPISLELMKDP--VIV--STGQTYERSSIQKWLD--AGHKTCPKSQET 52 (78)
T ss_dssp SSSCTTTSCCCSSE--EEE--TTTEEEEHHHHHHHHT--TTCCBCTTTCCB
T ss_pred cCCCCCccccccCC--EEc--CCCCeecHHHHHHHHH--HCcCCCCCCcCC
Confidence 45799999765443 332 5888899989754332 235789999854
No 113
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.01 E-value=21 Score=31.27 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=35.4
Q ss_pred ccccccccCCC-CCCCeeecCCCCCcccccccccCCC-CCCCcEEcCCCCC
Q psy128 277 WICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 325 (446)
Q Consensus 277 ~~C~VCg~pdd-~~~~mIqCD~C~~WfH~~Cvg~~~~-~~~~~w~Cp~C~~ 325 (446)
..|.+|+.+.+ -++.-..|-.|..-.-..|-+.... .....|+|..|..
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 36999998763 2224678999998787888776533 4455799999984
No 114
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=34.62 E-value=22 Score=27.84 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.5
Q ss_pred CcccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 275 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 275 ~~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
.+.+|.+|+..-.+ ....+.|..|..-.|-.|+..
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 35689999976554 225789999999999999864
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.19 E-value=8.8 Score=31.99 Aligned_cols=49 Identities=20% Similarity=0.506 Sum_probs=35.1
Q ss_pred cccccccc----CCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 277 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 277 ~~C~VCg~----pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
-.|+||+- ..+++ ..|.|..|..-.--.|+-.. ...+.-.|+.|..+..
T Consensus 17 qiCqiCGD~VG~~~~Ge-~FVAC~eC~FPvCrpCyEYE--rkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGD-LFVACNECGFPACRPCYEYE--RREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSS-BCCSCSSSCCCCCHHHHHHH--HHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCC-EEEeeeccCChhhHHHHHHH--HhccCccccccCCccc
Confidence 36999994 23555 78999999987777776443 2345678999986543
No 116
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.18 E-value=25 Score=27.74 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.1
Q ss_pred cccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.+ ....+.|..|..-.|-.|...
T Consensus 28 pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp CCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 4579999976654 225789999999999999875
No 117
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.91 E-value=20 Score=26.95 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=10.1
Q ss_pred CCCcEEcCCCCCc
Q psy128 314 ETSDWFCPKCSKV 326 (446)
Q Consensus 314 ~~~~w~Cp~C~~k 326 (446)
.+++|.||.|...
T Consensus 33 lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 33 IPDDWVCPLCGVG 45 (54)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4568999999853
No 118
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=33.41 E-value=10 Score=32.35 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=28.0
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
.|.||.....+. .++ .|+..||..|+.--.. ....||.|+..
T Consensus 55 ~C~iC~~~~~~~-~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~ 96 (138)
T 4ayc_A 55 QCIICSEYFIEA-VTL---NCAHSFCSYCINEWMK---RKIECPICRKD 96 (138)
T ss_dssp BCTTTCSBCSSE-EEE---TTSCEEEHHHHHHHTT---TCSBCTTTCCB
T ss_pred CCcccCcccCCc-eEC---CCCCCccHHHHHHHHH---cCCcCCCCCCc
Confidence 599998755433 222 4888899999764322 23569999854
No 119
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=33.02 E-value=21 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=26.7
Q ss_pred cccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
+.+|.+|+..-.| ....+.|..|..-.|-.|...
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 4579999876654 236789999999999999764
No 120
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=32.83 E-value=7.4 Score=31.42 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=33.0
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
...|.||..... ..+.|-.|+-.||..|+..-.... ...||.|+...
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBC
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcC
Confidence 456999986543 256778899999999986433211 26899999543
No 121
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.28 E-value=17 Score=35.96 Aligned_cols=39 Identities=28% Similarity=0.780 Sum_probs=26.8
Q ss_pred cccccccccCC----------CCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 276 VWICPACGVQD----------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pd----------d~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
..+|+|||... .++..++.|..|+.-+|+ ..+.|+.|..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-----------~R~~C~~Cg~ 230 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-----------VRIKCSHCEE 230 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-----------CTTSCSSSCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-----------cCcCCcCCCC
Confidence 46899999532 133358899999966664 2467888874
No 122
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.05 E-value=20 Score=26.88 Aligned_cols=13 Identities=38% Similarity=1.127 Sum_probs=10.2
Q ss_pred CCCcEEcCCCCCc
Q psy128 314 ETSDWFCPKCSKV 326 (446)
Q Consensus 314 ~~~~w~Cp~C~~k 326 (446)
.+++|.||.|...
T Consensus 33 lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 33 IPADWVCPDCGVG 45 (55)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 4568999999853
No 123
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=29.91 E-value=8 Score=32.22 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCccc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 328 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~~ 328 (446)
..|.||.....+- .++ .|+-.||..|+..-.. ...+.||.|+....
T Consensus 53 ~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFRP-ITT---VCQHNVCKDCLDRSFR--AQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSSE-EEC---TTSCEEEHHHHHHHHH--TTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcCc-EEe---eCCCcccHHHHHHHHh--HCcCCCCCCCccCC
Confidence 4699998655433 222 6888899999753322 23468999996543
No 124
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.83 E-value=1.4e+02 Score=31.86 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=21.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHH
Q psy128 148 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 186 (446)
Q Consensus 148 e~e~~e~~~k~~~~~~~~~~~~~~~~~~~k~~~~e~~rk 186 (446)
|+.+.+.++++.+...+++.+.+..|+.++++-.|..++
T Consensus 492 ~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~q 530 (592)
T 1f5n_A 492 ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 530 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555566666666665555555555
No 125
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=29.25 E-value=36 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=26.6
Q ss_pred cccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.+ ....+.|..|..-.|-.|+..
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 4579999976554 225688999999999999864
No 126
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=28.51 E-value=31 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=25.6
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV 310 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~ 310 (446)
..+|.+|+..-. ..+.|..|..-.|-.|+...
T Consensus 14 pt~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFLL---NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEEC---SEEECTTTTCCBCSTTSSSS
T ss_pred CcCCCCcccccc---cCCEeCCCCCeEChhHHhhC
Confidence 468999987554 36799999999999998743
No 127
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.20 E-value=27 Score=27.34 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=19.2
Q ss_pred cccccccccCC--CCCCCeeecCCCCCcccc
Q psy128 276 VWICPACGVQD--DGSLPMIGCDGCDAWYHW 304 (446)
Q Consensus 276 ~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~ 304 (446)
+..|++|+.+- +.+...+.|..|+.||=.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 55799998642 121247788888888754
No 128
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.70 E-value=40 Score=26.76 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=27.1
Q ss_pred cccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.+ ....+.|..|..-.|-.|+..
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 5679999976554 225789999999999999865
No 129
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.69 E-value=25 Score=27.38 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=20.2
Q ss_pred CcccccccccCC--CCCCCeeecCCCCCccccc
Q psy128 275 QVWICPACGVQD--DGSLPMIGCDGCDAWYHWV 305 (446)
Q Consensus 275 ~~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~~ 305 (446)
++..|++|+.+- +.+...+.|..|+.||=..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 356799998642 1111477899998888543
No 130
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.38 E-value=23 Score=27.80 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=20.2
Q ss_pred CcccccccccCC--CCCCCeeecCCCCCccccc
Q psy128 275 QVWICPACGVQD--DGSLPMIGCDGCDAWYHWV 305 (446)
Q Consensus 275 ~~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~~ 305 (446)
++..|++|+.+- +.+...+.|..|+.||=..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 356799998642 1112478898998888543
No 131
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=27.21 E-value=15 Score=29.67 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=31.2
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+ -+....|+-.||..|+.--... ...||.|....
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET---SKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS---CSBCTTTCCBS
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh---CCcCcCCCccc
Confidence 3569999865433 4445578989999998543321 26899998543
No 132
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.64 E-value=14 Score=27.28 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=27.7
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
...|.||.....+ .. -.|+-.||..|+..-.. ....||.|+.
T Consensus 15 ~~~C~IC~~~~~~--~~---~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~ 56 (70)
T 2ecn_A 15 EEECCICMDGRAD--LI---LPCAHSFCQKCIDKWSD---RHRNCPICRL 56 (70)
T ss_dssp CCCCSSSCCSCCS--EE---ETTTEEECHHHHHHSSC---CCSSCHHHHH
T ss_pred CCCCeeCCcCccC--cc---cCCCCcccHHHHHHHHH---CcCcCCCcCC
Confidence 3469999864333 22 24777799999865333 3567999974
No 133
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.09 E-value=24 Score=27.48 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=19.1
Q ss_pred cccccccccCC--CCCCCeeecCCCCCcccc
Q psy128 276 VWICPACGVQD--DGSLPMIGCDGCDAWYHW 304 (446)
Q Consensus 276 ~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~ 304 (446)
+..|++|+.+- +.+...+.|..|+.||=.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 56799998642 111147788888888844
No 134
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.56 E-value=27 Score=38.55 Aligned_cols=27 Identities=26% Similarity=0.836 Sum_probs=20.5
Q ss_pred cccccccCCCCCCCeeecCCCCCcccccc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVC 306 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~WfH~~C 306 (446)
.|..||-.+.. -.+.|-.|+.||.-.-
T Consensus 13 ~c~yc~~~~~~--~~~~c~~~~~wfcn~~ 39 (802)
T 2xzl_A 13 SCAYCGIDSAK--CVIKCNSCKKWFCNTK 39 (802)
T ss_dssp CCTTTCCCCTT--TEEEETTTCCEEECCC
T ss_pred hCcccCCCCCc--eEEEeCCCCcEecCCC
Confidence 58888875444 4999999999995433
No 135
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.29 E-value=32 Score=26.81 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=19.8
Q ss_pred CcccccccccCC--CCCCCeeecCCCCCcccc
Q psy128 275 QVWICPACGVQD--DGSLPMIGCDGCDAWYHW 304 (446)
Q Consensus 275 ~~~~C~VCg~pd--d~~~~mIqCD~C~~WfH~ 304 (446)
++..|++|..+- +.....+.|..|+.||=.
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccccC
Confidence 356799998642 111247789999988844
No 136
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=24.00 E-value=49 Score=26.77 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=31.6
Q ss_pred CCCCCCccccccccc------CCCCCC----CeeecCC-CCCcccccccccCCC------CCCCcEEcCC
Q psy128 270 TGDSKQVWICPACGV------QDDGSL----PMIGCDG-CDAWYHWVCVGLVAE------PETSDWFCPK 322 (446)
Q Consensus 270 eed~~~~~~C~VCg~------pdd~~~----~mIqCD~-C~~WfH~~Cvg~~~~------~~~~~w~Cp~ 322 (446)
.+.+.|+.-|..|.. |..+.. -||.|.. =+-|-|..|.++... .....|||..
T Consensus 6 ~etGYWI~Cc~~c~~dvntw~p~ystel~kpami~cs~g~ghwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 6 PEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp SSCSSCSCSSTTCCCCTTTCCCCSSSCSSSCCCEECCSSSCCEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred CcCceEEEecCccccCcccccccccchhcchhhhhcCCCcchHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 345678777777873 222221 2566632 368899999777543 3445677754
No 137
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.25 E-value=46 Score=24.12 Aligned_cols=13 Identities=38% Similarity=1.089 Sum_probs=9.9
Q ss_pred CCCcEEcCCCCCc
Q psy128 314 ETSDWFCPKCSKV 326 (446)
Q Consensus 314 ~~~~w~Cp~C~~k 326 (446)
.+++|.||.|...
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3457999999853
No 138
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=22.99 E-value=22 Score=28.19 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=30.8
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
...|.||.....+ -+..-.|+..||..|+.--.. ....||.|+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS---YKTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH---CCCCCCCCCCcC
Confidence 4579999865443 233356888899999854332 236899998643
No 139
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.93 E-value=49 Score=25.64 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCCCeeecCCCCCccccccccc
Q psy128 275 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 275 ~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
...+|..|+..- .. ..+.|..|+.-.|..|...
T Consensus 34 ~pt~C~~C~~~l-~~-qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 34 GPGWCDLCGREV-LR-QALRCANCKFTCHSECRSL 66 (72)
T ss_dssp SCCBCTTTSSBC-SS-CCEECTTSSCEECTGGGGG
T ss_pred CCcchhhhhHHH-Hh-CcCccCCCCCeechhhhcc
Confidence 356799998655 33 5789999999999999864
No 140
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.91 E-value=12 Score=31.99 Aligned_cols=50 Identities=16% Similarity=0.406 Sum_probs=32.3
Q ss_pred ccccccccCCCCCCCeeecCCCC-CcccccccccCCC-CCCCcEEcCCCCCc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCD-AWYHWVCVGLVAE-PETSDWFCPKCSKV 326 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~-~WfH~~Cvg~~~~-~~~~~w~Cp~C~~k 326 (446)
..|.+|...-......-.||.|+ .-+...|+--... ...+.|||..|...
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~l 81 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRL 81 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHHH
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhhh
Confidence 36888886433332344689888 5557788755533 34458999999743
No 141
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.80 E-value=31 Score=22.89 Aligned_cols=14 Identities=36% Similarity=1.032 Sum_probs=10.7
Q ss_pred CCCcEEcCCCCCcc
Q psy128 314 ETSDWFCPKCSKVD 327 (446)
Q Consensus 314 ~~~~w~Cp~C~~k~ 327 (446)
..++|+|+.|....
T Consensus 2 k~gDW~C~~C~~~N 15 (32)
T 2lk0_A 2 KFEDWLCNKCCLNN 15 (32)
T ss_dssp CCSEEECTTTCCEE
T ss_pred CCCCCCcCcCcCCc
Confidence 35899999997543
No 142
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.64 E-value=52 Score=32.55 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=26.8
Q ss_pred CcccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 275 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 275 ~~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
....|.+|+..-.| ...-..|..|+..+|..|..-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 35679999976543 224567999999999999874
No 143
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=22.62 E-value=14 Score=32.03 Aligned_cols=47 Identities=17% Similarity=0.455 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCC
Q psy128 273 SKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325 (446)
Q Consensus 273 ~~~~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~ 325 (446)
-.....|.||.....+- ++. .|+-.|+..|+..-.. .....||.|+.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~ 74 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQA-QCGHRYCSFCLASILS--SGPQNCAACVH 74 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHGG--GSCEECHHHHH
T ss_pred CCcCcCCCCCChhhcCc---EEC-CCCCccCHHHHHHHHh--cCCCCCCCCCC
Confidence 34456799998654432 443 7888898888765332 23478999984
No 144
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=22.12 E-value=38 Score=25.52 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.3
Q ss_pred cccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.+ ....+.|..|....|-.|+..
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 4579999876554 124688999999999999864
No 145
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.06 E-value=47 Score=27.20 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=27.6
Q ss_pred cccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCc
Q psy128 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 326 (446)
Q Consensus 276 ~~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k 326 (446)
...|.||.....+- .++ ..|+-.|+..|+.-... ..||.|...
T Consensus 22 ~~~C~IC~~~~~~p-v~~--~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNILREP-VCL--GGCEHIFCSNCVSDCIG-----TGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCCSSC-BCC--CSSSCCBCTTTGGGGTT-----TBCSSSCCB
T ss_pred CCCCCCCChHhhCc-cEe--CCCCCHHHHHHHHHHhc-----CCCcCCCCc
Confidence 35699998755443 222 25777788888754322 579999854
No 146
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.84 E-value=33 Score=27.85 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=13.6
Q ss_pred cccccccCCCCCCCeeecCCCCCc
Q psy128 278 ICPACGVQDDGSLPMIGCDGCDAW 301 (446)
Q Consensus 278 ~C~VCg~pdd~~~~mIqCD~C~~W 301 (446)
.|+.|+.+-..+.....|+.|+.-
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~ 27 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKD 27 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCE
T ss_pred CCCCCCCccccCCCceECcccccc
Confidence 577777543222135567777753
No 147
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=20.17 E-value=49 Score=24.71 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=26.0
Q ss_pred cccccccccCCCC-CCCeeecCCCCCccccccccc
Q psy128 276 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 309 (446)
Q Consensus 276 ~~~C~VCg~pdd~-~~~mIqCD~C~~WfH~~Cvg~ 309 (446)
..+|.+|+..-.| ....+.|..|....|-.|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 4579999875543 125689999999999999764
No 148
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=20.15 E-value=20 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=29.5
Q ss_pred ccccccccCCCCCCCeeecCCCCCcccccccccCCCCCCCcEEcCCCCCcc
Q psy128 277 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 327 (446)
Q Consensus 277 ~~C~VCg~pdd~~~~mIqCD~C~~WfH~~Cvg~~~~~~~~~w~Cp~C~~k~ 327 (446)
..|.||.....+- .+ -.|+-.|+..|+.--.. ...+.||.|+...
T Consensus 79 ~~C~IC~~~~~~p--v~--~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 79 FMCVCCQELVYQP--VT--TECFHNVCKDCLQRSFK--AQVFSCPACRHDL 123 (150)
T ss_dssp TBCTTTSSBCSSE--EE--CTTSCEEEHHHHHHHHH--TTCCBCTTTCCBC
T ss_pred CEeecCChhhcCC--EE--cCCCCchhHHHHHHHHH--hCCCcCCCCCccC
Confidence 4699998654433 22 26888888888754332 1346899998543
No 149
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.13 E-value=98 Score=24.06 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=30.9
Q ss_pred cccccccccCCC---------------CCCCeeecCCCCCcc---cccccccCCC--CCCCcEEcCCCCCcccCch
Q psy128 276 VWICPACGVQDD---------------GSLPMIGCDGCDAWY---HWVCVGLVAE--PETSDWFCPKCSKVDEGSR 331 (446)
Q Consensus 276 ~~~C~VCg~pdd---------------~~~~mIqCD~C~~Wf---H~~Cvg~~~~--~~~~~w~Cp~C~~k~~~~~ 331 (446)
...|.+|+.... +......|+.|+..| ...-+..-.. .....|.|..|........
T Consensus 19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~ 94 (115)
T 2dmi_A 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQ 94 (115)
T ss_dssp SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHH
T ss_pred CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHH
Confidence 467999985321 121334589998766 2122221111 2334699999986655443
Done!