RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy128
(446 letters)
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 63.5 bits (154), Expect = 1e-13
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 271 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSK 325
G S C ACG I CD C+ W+H CV + + CP CS
Sbjct: 1 GSSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 57.8 bits (139), Expect = 2e-11
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 276 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKE 333
V + C + + MI C C W+H CVG+ E + + CP C + G
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC-EAVFGPSIM 69
Query: 334 KKKRGRKKK 342
K
Sbjct: 70 KNWHSGPSS 78
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 55.8 bits (134), Expect = 6e-11
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 282 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP-ETSDWFCPKCSK 325
CG +DD M+ CDGC W+H C+G+ S + C +C +
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 54.7 bits (131), Expect = 2e-10
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 282 CGVQDDGSLPMIGCDGCDAWYHWVCVGL------VAEPETSDWFCPKCS 324
C + MI CD C+ W+H CVG+ + E D+ CP C+
Sbjct: 21 CRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 48.8 bits (116), Expect = 1e-08
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 279 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKC 323
C C + + +I CD C+ +H C+ + E +W CP C
Sbjct: 3 CKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 47.6 bits (113), Expect = 4e-08
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 271 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKCS 324
G + C C + ++ CD C + YH C+ + E +W CP+C+
Sbjct: 4 GSDHHMEFCRVCKDGGE----LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 47.0 bits (111), Expect = 1e-07
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 269 DTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP------ETSDWFCPK 322
D + C + S+ C W H CV L +P ++C
Sbjct: 9 DPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68
Query: 323 CS 324
C
Sbjct: 69 CR 70
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 46.1 bits (109), Expect = 1e-07
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 278 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKCSKVDEGSRKEKKK 336
IC C D ++ C+ C+ +H C + + +W C C + + ++
Sbjct: 9 ICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 64
Query: 337 RGRK 340
+ K
Sbjct: 65 QACK 68
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 44.9 bits (106), Expect = 2e-07
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 282 CGVQDDGSLPMI-GCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 325
C G + D W+H+ CVGL +P WFCP+CS+
Sbjct: 7 CHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 50
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 46.0 bits (108), Expect = 3e-07
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 279 CPACG-VQDDGSLPMIGCDGCDAWYHWVCVG-----LVAEPETSDWFCPKCSKVDEGSRK 332
C C + ++ C C YH C W+C +C++ + +
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78
Query: 333 EKKKRG 338
+ +K G
Sbjct: 79 KNQKSG 84
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 43.4 bits (102), Expect = 2e-06
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 282 CGVQDDGSLPMIGCDGCD-AWYHWVCVGLVAEPETSDWFCPKC 323
C G + + C W+H+ CV L +P+ W+CPKC
Sbjct: 21 CNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPK-GKWYCPKC 62
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 39.0 bits (90), Expect = 8e-04
Identities = 18/122 (14%), Positives = 54/122 (44%)
Query: 103 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEE 162
E + ++ K KE + + D+ + +++ + ++ K + + + E
Sbjct: 166 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 225
Query: 163 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 222
++K E+ + KE + K E+ ++++ + K++++ L + ++++ KE E
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 285
Query: 223 KE 224
Sbjct: 286 SR 287
Score = 38.6 bits (89), Expect = 0.001
Identities = 15/116 (12%), Positives = 52/116 (44%)
Query: 97 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEE 156
S E + + +K + + + + K + + K+++ E+++ +E
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 243
Query: 157 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 212
K+ ++ + ++ +KE + K++++E+ ++ + + + K + + L+ K
Sbjct: 244 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 38.6 bits (89), Expect = 0.001
Identities = 22/128 (17%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 102 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKE 161
I+ ++ ++ K+ + ++ + +K+K E+ K + + K + +++
Sbjct: 170 KGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRK 229
Query: 162 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 221
++ E+KE +E ++ EK+ + KE++ + KL++++ K+ ++ S
Sbjct: 230 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE-RTLALKLQEQEQLLKEGFQKESRI 288
Query: 222 EKEVIPKL 229
K I L
Sbjct: 289 MKNEIQDL 296
Score = 33.2 bits (75), Expect = 0.051
Identities = 12/118 (10%), Positives = 49/118 (41%)
Query: 101 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKK 160
L + +++++I+ ++ K + + K + +++ E+ ++++
Sbjct: 182 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSY 241
Query: 161 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 218
+E K+ ++ + + ++ K E+E+ K+ +K + + + + +
Sbjct: 242 QEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 32.8 bits (74), Expect = 0.060
Identities = 14/102 (13%), Positives = 42/102 (41%)
Query: 94 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGK 153
+T E E+++ K+ E ++ ++ ++ + + K +K +
Sbjct: 198 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 257
Query: 154 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 195
+ KE++ K +++ ++ ++ + +I K E + K
Sbjct: 258 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 36.4 bits (84), Expect = 0.002
Identities = 20/108 (18%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 108 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKE 167
S+ + + ++ ++K++ ++++ + + + EK+E E+ E +K E+
Sbjct: 34 ASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER---EVIQKAIEENNNF 90
Query: 168 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 215
K K K ++ K +E + ++ ++KDK ++ + K+ KE
Sbjct: 91 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 33.7 bits (77), Expect = 0.013
Identities = 16/96 (16%), Positives = 45/96 (46%)
Query: 123 EKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 182
E ++D + ++K + +E+ K ++ E K ++++ E+E K +E
Sbjct: 31 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF 90
Query: 183 KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 218
+EK ++K + +K+ + L++ +++ +
Sbjct: 91 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126
Score = 31.0 bits (70), Expect = 0.10
Identities = 14/85 (16%), Positives = 38/85 (44%)
Query: 140 KEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 199
+ +D +E +K + +E+++ +E + K K + E+ V + EE ++ + +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 200 KDKKLKKEKLKKKKKEKERSSHEKE 224
+K++ K ++ +E
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQE 122
Score = 29.9 bits (67), Expect = 0.27
Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 111 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKE 170
++ + +KK + +++ K +E + K EK + E E ++ ++
Sbjct: 32 FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER-EVIQKAIEENNNF 90
Query: 171 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 218
KM ++K +K+ +++ E + + + K + ++ +K KE
Sbjct: 91 IKMAKEKLA--QKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 136
Score = 28.7 bits (64), Expect = 0.83
Identities = 16/95 (16%), Positives = 44/95 (46%)
Query: 94 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGK 153
+ S E++ + + ++ + + + K++ +++ K + + K KEK
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA 99
Query: 154 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 188
++ + KE +E + ++K+K E++RK +
Sbjct: 100 QKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 37.5 bits (86), Expect = 0.003
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 22 PPMLQHPLIPQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDV 81
P L L P + + K T E + S E ++ +
Sbjct: 1112 TPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQL 1171
Query: 82 ELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE 141
+ S L ++ D++ DK + E+I K+ K D I +++
Sbjct: 1172 HFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERI-KQTFKNDLFVIWSED 1230
Query: 142 KDKEK-----KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 196
D++ + K E E +E+ K+ + ++ + VE I + K
Sbjct: 1231 NDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKV 1290
Query: 197 SKDKDKKLKKEKL 209
+ +K+ +
Sbjct: 1291 PSPTGEYVKEPEW 1303
Score = 37.1 bits (85), Expect = 0.004
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 100 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEK 159
D +++ + + K K + D + + G + +
Sbjct: 115 DEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIR 174
Query: 160 KEE-KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 204
K+ K K+ + D ++P ++ E+ K KD
Sbjct: 175 KDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTS 220
Score = 34.8 bits (79), Expect = 0.021
Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 101 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK-IKNKEKDKEKKEKEKGKKEEKEK 159
G++ D+ + ++ K+ +K K K + + E + +
Sbjct: 109 CGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGN 168
Query: 160 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 219
+ +K+ + K++ + E ++ + K + + + S
Sbjct: 169 TQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFS 228
Query: 220 SHEK---EVIP 227
E +P
Sbjct: 229 RPEWMILTCLP 239
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 35.1 bits (81), Expect = 0.011
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 114 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEK 169
K++ +IK+ + D K+ + + +++++K+ +E+K+ + E+EK EE
Sbjct: 75 KESGGPLNGIEIKEF-SRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 35.1 bits (80), Expect = 0.012
Identities = 13/105 (12%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 108 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKE 167
+ +KK + + K+ + ++ + D + G + ++ E
Sbjct: 148 EILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSE 207
Query: 168 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 212
++ K +E +E D EK + D+ + ++ +++
Sbjct: 208 LLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESR----DRYRRR 248
Score = 30.1 bits (67), Expect = 0.49
Identities = 7/103 (6%), Positives = 31/103 (30%)
Query: 85 VTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK 144
V ++ ++ + + ++ + + + + +D
Sbjct: 146 VREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDD 205
Query: 145 EKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 187
+ ++ + E K E K+ + ++ ++ R+
Sbjct: 206 SELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRR 248
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 35.0 bits (80), Expect = 0.014
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 118 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 177
K K E +K + +K + K K KE KKEE K+ ++ ++ +K K
Sbjct: 215 KTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYS 274
Query: 178 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 216
E K K ++ + + + + K E+L K K
Sbjct: 275 EFKSIKPEVYLKKYSEKCSNLNFEDEFK-EELHSDYKNK 312
Score = 28.5 bits (63), Expect = 1.6
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 102 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKE 161
+ K K + KKKE+ + K+ ++ + N + E K + +K ++
Sbjct: 233 DDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKG-NNYKMYSEFKSIKPEVYLKKYSEK 291
Query: 162 EKEKKEEKEFKMKEDKEK 179
E EFK + +
Sbjct: 292 CSNLNFEDEFKEELHSDY 309
Score = 27.7 bits (61), Expect = 3.1
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 101 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKK 160
+ +K + K + + K++ K+ KK ++ K ++ +E ++ K E K
Sbjct: 219 IETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM-YSEFK 277
Query: 161 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 195
K + K++ K ++ ++E K K
Sbjct: 278 SIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYKNK 312
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 34.9 bits (80), Expect = 0.015
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 107 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKK 166
KS+ + KK E++ +KDK K K +E+ K +
Sbjct: 211 QKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLY 270
Query: 167 EE---------KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 217
+E K+ ++E + ++ +K ++ ++K+++ KL K+K EKE
Sbjct: 271 KELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Query: 218 R 218
R
Sbjct: 331 R 331
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 34.4 bits (78), Expect = 0.025
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 121 EKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 180
++ + K +++N + KE + ++ E+ + +ED+E
Sbjct: 618 KELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESS 677
Query: 181 VEKIRKEEKDSEKEKKSKD--------KDKKLKKEKLKKKKKEKE 217
E E+ + + K + +KL K+K+EKE
Sbjct: 678 HEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKE 722
Score = 30.6 bits (68), Expect = 0.40
Identities = 14/135 (10%), Positives = 42/135 (31%), Gaps = 22/135 (16%)
Query: 91 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKE 150
+ + + E++ + +K+ + + D + E+D+E ++
Sbjct: 621 TVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHED 680
Query: 151 KGKKEEKEK------------------KEEKEK----KEEKEFKMKEDKEKPVEKIRKEE 188
+ KE +K K+EKE +++ + + I +
Sbjct: 681 TENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTD 740
Query: 189 KDSEKEKKSKDKDKK 203
+ + + +
Sbjct: 741 LKAFEVGYQEFLQRD 755
Score = 27.5 bits (60), Expect = 4.4
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 119 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEK 169
K+ +K+ K+K +K+ + + + K E +E ++ E
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 33.9 bits (78), Expect = 0.028
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 114 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEK 169
+K +EK I K D ++ K + + K+ K+E+ + KEE EK ++
Sbjct: 83 RKEMTNEEKNIITNL-SKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 33.3 bits (75), Expect = 0.036
Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 96 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIK--KKKDKKDKDKIKNKEKDKEKKEKEKGK 153
+ E+ ++K + KK ++I + + + ++E
Sbjct: 128 VKRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVI 187
Query: 154 KEEKEKKEEKEKKEEKEFK 172
+ KEK ++ + +
Sbjct: 188 RVAKEKFGDEAEVVLRRVY 206
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 32.7 bits (74), Expect = 0.091
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 118 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEK----KEEKEFKM 173
K +K K + ++ IK E EK K E+ E + E +
Sbjct: 2 KDLADYPVKLKAYEDEQASIK-----AALAELEKHKNEDGNLTEPSAQNLVYDLEPNANL 56
Query: 174 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 220
+ K D+ + SK K + + E+S+
Sbjct: 57 SLTTDGKFLK-ASAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSN 102
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 32.7 bits (74), Expect = 0.097
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 140 KEKDKEKKEKEKGKKEEKEKKEEKEKKEEKE------FKMKEDKEKPVEKIRKEEKDSEK 193
K D K K + EE +++ KE++ + FK + P E EKD
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDDTF 383
Query: 194 EKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVI 251
K + + K +KE KE + + ++F ++ + +IV+
Sbjct: 384 LKLASALNLSTKNAPSGTLVGDKED---RKEDLSSIHWRF-----QRELWDEEKEIVL 433
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 31.9 bits (72), Expect = 0.11
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 117 HKKKEKEKIKKK-KDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 175
KE+ K+ +K K + + + + KK++ + K +K+
Sbjct: 188 ELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKK 247
Query: 176 DKEKPVEKIRK-EEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 216
++ E I + ++ K+ + + K
Sbjct: 248 TQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNHL 289
Score = 31.1 bits (70), Expect = 0.20
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 103 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKEKEKGKKEEKEKKE 161
E +D + K+ K EK K + + + K + KK++ +
Sbjct: 180 EWGRDYMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLS 239
Query: 162 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 211
K +K K+ + I K+E + KE +++ K
Sbjct: 240 TKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNHL 289
Score = 27.3 bits (60), Expect = 3.6
Identities = 11/100 (11%), Positives = 29/100 (29%)
Query: 134 KDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 193
+ K + K EK + K + ++K + + S K
Sbjct: 187 SELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVK 246
Query: 194 EKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKF 233
+ + + + K++ + + + I K +
Sbjct: 247 KTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLY 286
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 30.4 bits (68), Expect = 0.37
Identities = 6/77 (7%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 103 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEE 162
++ +K+ K ++ I + K + + + + ++ ++ K + +
Sbjct: 197 NNALYEACEKECIDPCMKYRDWIIRSK--FEWHTLSKEYETQKVPKENAENYLIKISENK 254
Query: 163 KEKKEEKEFKMKEDKEK 179
+ K + +
Sbjct: 255 NDAKVSLLLNNCDAEYS 271
Score = 27.7 bits (61), Expect = 2.4
Identities = 14/124 (11%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 101 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKK 160
L E K + + K+ + + + IK+ + ++ + K K + + +++
Sbjct: 149 LSEHKNNINNCKNIPQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKEC 208
Query: 161 EEK--------EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 212
+ + + + + ++ E E K ++K+ K
Sbjct: 209 IDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDA 268
Query: 213 KKEK 216
+ K
Sbjct: 269 EYSK 272
Score = 26.5 bits (58), Expect = 7.2
Identities = 5/54 (9%), Positives = 16/54 (29%)
Query: 112 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEK 165
K ++ + +K K+ + + + K + + E +
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSKY 273
Score = 26.1 bits (57), Expect = 7.7
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 106 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD----------------KEKKEK 149
D + K +E K + + KIKN K +
Sbjct: 98 NDMDFGGYSTKAENKIQEVFKGAHGEISEHKIKNFRKKWWNEFREKLWEAMLSEHKNNIN 157
Query: 150 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK--KE 207
++E + + KE + E + K + ++ E K+ ++
Sbjct: 158 NCKNIPQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRD 217
Query: 208 KLKKKKKE 215
+ + K E
Sbjct: 218 WIIRSKFE 225
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 30.4 bits (68), Expect = 0.43
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 4/131 (3%)
Query: 113 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFK 172
D T E++K K K K E + +E E E +++ + +
Sbjct: 121 DGVTTSLPSPEQLKGKILLKGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQ 180
Query: 173 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFK 232
K ++K K+ E D KS + E +S + +L +
Sbjct: 181 HKPKEDKL--KLVPELSDMIIYCKSVHFGGF--SSPGTSGQAFYEMASFSESRALRLLQE 236
Query: 233 FGTDMEEKTKR 243
G
Sbjct: 237 SGNGFVRHNVS 247
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 30.0 bits (67), Expect = 0.53
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 98 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKK---------DKKDKDKIKNKEKDKEKKE 148
+E L +K + + K ++ I D + + + +EK+ +K
Sbjct: 172 TEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKV 231
Query: 149 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 178
K +E+ + ++ + + + + E
Sbjct: 232 KAAMTEEDLAELARATEELKLKQETPDPPE 261
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 153 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 206
+K +E+ EEK E+ + M E+ + ++ + ++ + ++++ D + L+
Sbjct: 215 EKATQEEVEEKNILEKVKAAMTEED---LAELARATEELKLKQETPDPPEALRC 265
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 279
Score = 29.4 bits (65), Expect = 0.74
Identities = 18/141 (12%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 103 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEE 162
++ K ++ K+ K +E + ++ ++ K+ E K++ + E
Sbjct: 90 CLELTKYSQEMKQERKMHFQEGRRAQQQLENG-----------FKQLENSKRKFERDCRE 138
Query: 163 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 222
EK + ++ +D + K ++ + ++ K +L++ +++
Sbjct: 139 AEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAH--FY 196
Query: 223 KEVIPKLTFKFGTDMEEKTKR 243
+P++ K E + R
Sbjct: 197 FSQMPQIFDKLQDMDERRATR 217
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 29.2 bits (64), Expect = 1.0
Identities = 20/159 (12%), Positives = 50/159 (31%), Gaps = 2/159 (1%)
Query: 85 VTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK 144
M P ++ + ++ ++I ++ K + ++ + + +
Sbjct: 151 FIKMSPLERRLLIDDISVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEI 210
Query: 145 EKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 204
E K K K + ++ F K KP +E D+ + + + L
Sbjct: 211 EAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADL 270
Query: 205 KKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR 243
KE K+ + + ++ G M + +
Sbjct: 271 IKES--SKESQFIVITLRDVMMANADKIIGVSMRDGVSK 307
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 98 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
E I++ + I +D+K + +K+ K + ++ KEK+
Sbjct: 135 REAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 85
Score = 26.8 bits (59), Expect = 1.8
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 284 VQDDGSLPMIGCDGCDAW-YHWVCVGLVAEPETSDWFCPKCSKVDEGS 330
+D+G +I C C + H C L + W C +C S
Sbjct: 38 FEDEGRWRLILCATCGSHGTHRDCSSLRPNSK--KWECNECLPASGPS 83
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
{Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 27.5 bits (61), Expect = 2.4
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 125 IKKKKD-KKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 183
I++ +D KDK+ EK + ++ ++ EKE E +K ++ +
Sbjct: 1 IERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKK---DSEQISNYSQTRQYF 57
Query: 184 IRKEEKDSEKEKKSKDKDKKLKKEKLKK 211
+ + + +EK+ K+ + K K+ K
Sbjct: 58 YDYQIESNPREKEYKNLRNAISKNKIDK 85
Score = 26.4 bits (58), Expect = 7.1
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 108 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKE 167
K ++ +K EKE ++ K KD ++I N + ++ + + +EK+ + +
Sbjct: 20 KEAERVEKNLDTLEKEALELYK--KDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNA 77
Query: 168 EKEFKMKED-----KEKPVE-KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 216
+ K+ + E P + KE + + + S +K +LK+ K K+
Sbjct: 78 ISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQD 132
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 3.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 125 IKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEE 162
I+ K K+ + K NKE + + + K + K++
Sbjct: 12 IRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKK 49
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.4 bits (58), Expect = 3.7
Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 111 KKDKKTHKKKEKEKIKKKKDKK---DKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKE 167
+ D K + + KK + +++ K + ++ + + K EEK+++EE ++ +
Sbjct: 71 RPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQ 130
Query: 168 EKE 170
+K
Sbjct: 131 QKR 133
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 26.8 bits (59), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 99 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
DL + KDK I +D+ ++E +K+ KK + + KEK+
Sbjct: 137 NDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 27.2 bits (60), Expect = 3.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 10 PSVAGPGLIPRLPPMLQHPLIPQPLVH 36
S+A G I + PM+ H + V
Sbjct: 175 KSIAKGGNISSVVPMVSHVDHTEHDVD 201
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 26.8 bits (59), Expect = 4.4
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 99 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
E+L I+K+ +D+ +K+ +K + + + +K+KE +
Sbjct: 136 EELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 180
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 26.5 bits (58), Expect = 4.5
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 91 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKEK 149
I+ V++ + + +I DK K++ E++ + + K K +D+++++K
Sbjct: 100 GILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQ-------EAEKYKAEDEKQRDK 151
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 25.1 bits (55), Expect = 4.6
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 119 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFK 172
++ + + +K+ + +++ K +EK KE E +E + K+ ++ +
Sbjct: 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAE 56
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.9 bits (59), Expect = 4.6
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 154 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 213
+ + KK + E + K D ++K + E K K+ + +K ++L+
Sbjct: 110 ELDSRYLSAALKKYQTEQRSKGDA---LDKCQAELKKLRKKSQGSKNPQKYSDKELQYID 166
Query: 214 KEKERSS 220
+
Sbjct: 167 AISNKQG 173
Score = 26.5 bits (58), Expect = 5.6
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 173 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFK 232
+++ E + K + E++SK + +LKK +K+ + S + ++ K
Sbjct: 105 LEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKEL-- 162
Query: 233 FGTDMEEKTKRESS 246
++ + ++
Sbjct: 163 --QYIDAISNKQGE 174
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 26.5 bits (58), Expect = 4.9
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 99 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
+ + + KDK I +D + + +K+ KK + + +KE +
Sbjct: 137 DKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181
Score = 26.1 bits (57), Expect = 6.3
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 86 TPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKD-KDKIKNKEKDK 144
+ PN L + +++ K + E+ ++ + ++D DK+K KDK
Sbjct: 87 LGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDK 146
Query: 145 EKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 179
E E + ++ + + ++ + +K DKE
Sbjct: 147 EISEDDD-RRSQDDVQKLTDAAIKKIEAALADKEA 180
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 25.7 bits (56), Expect = 5.0
Identities = 9/80 (11%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 122 KEKIKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPV 181
I++K D + + +++ ++ +K + + + + K + + + +
Sbjct: 15 HRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIAR-G 73
Query: 182 EKIRKEEKDSEKEKKSKDKD 201
+ + +E K E+ + K+
Sbjct: 74 KALGEEAKRLEEALREKEAR 93
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 191 SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 229
S E+K++ +KK + + ++K E E +V+ L
Sbjct: 63 SSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLL 101
>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 303
Score = 26.5 bits (58), Expect = 5.9
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 2/54 (3%)
Query: 3 PFQFSPFPSVAGPGL--IPRLPPMLQHPLIPQPLVHPPGTPPPSKMKDKVSPKD 54
P P + P P + L + P + P + +S
Sbjct: 190 PVPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVISETG 243
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.6 bits (58), Expect = 6.3
Identities = 18/123 (14%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 114 KKTHKKKEKEKIKKKKDKKDK-----DKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEE 168
+E + +++KK + + K K+ + + K E + E+ + + E
Sbjct: 247 ALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWE 306
Query: 169 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK--KLKKEKLKKKKKEKERSSHEKEVI 226
+E ++ + ++ + ++ E ++ D ++ +L+ +L K + E E S +
Sbjct: 307 REREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGA 366
Query: 227 PKL 229
+
Sbjct: 367 RFV 369
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 24.4 bits (52), Expect = 6.6
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 272 DSKQVWICPAC-GVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 323
+ + V +C C + GC G H C+ + + C C
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLT-ISRNTACQIC 53
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 26.1 bits (57), Expect = 7.1
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 99 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
+ + E +K+ I +D + E +K+ + +K + + K+++
Sbjct: 136 KKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 180
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus
aureus [TaxId: 1280]}
Length = 136
Score = 25.6 bits (56), Expect = 7.6
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 143 DKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 202
D++K + ++ EKE ++ E E +F ++ KP + I + K + +
Sbjct: 53 DEDKPHRISNERIEKEMIKDLESIIE-DFFIETGLNKP-DNITSYDSSKHHYKNHSEGFE 110
Query: 203 KLKKEKLKKKKKEKERS 219
L KE + +
Sbjct: 111 ALVKETREAVTNANDSW 127
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 26.1 bits (57), Expect = 7.7
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 99 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
+ L ++ K+ + +D+ + E +KI + K + KE++
Sbjct: 138 DKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQE 182
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 26.4 bits (57), Expect = 7.8
Identities = 15/121 (12%), Positives = 38/121 (31%), Gaps = 6/121 (4%)
Query: 125 IKKKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKED-----KEK 179
+D + + +E D ++ K+ + +K + + + E
Sbjct: 122 TDYHDPVEDIEFL-EREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 180 PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEE 239
V + + E K D ++++ K ++++ + K EE
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEE 240
Query: 240 K 240
K
Sbjct: 241 K 241
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 26.2 bits (57), Expect = 8.1
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 127 KKKDKKDKDKIKNKEKDKEKKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 186
+ K + + KE KE+ + KEE + + ++ K+K+ ++ + K
Sbjct: 276 MQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASNPLLLK 335
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 25.7 bits (56), Expect = 9.0
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 106 KDKSIKKDKKTHKKKEKEKIKKKKDKK 132
DK + + +K + +++ + D +
Sbjct: 134 HDKELHQRLNDWRKAQTDEVLENPDPR 160
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 25.4 bits (56), Expect = 9.9
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 84 GVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 143
G V V + + L E K + K + K + IK K +++ +++K
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTK---EAYKKYIKDYMKSIKGKLEEQRPERVKPFMTG 117
Query: 144 KEKKEK 149
++ K
Sbjct: 118 AAEQIK 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.129 0.377
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,654,930
Number of extensions: 86521
Number of successful extensions: 1394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 296
Length of query: 446
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,199,356
Effective search space: 429369448
Effective search space used: 429369448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.3 bits)