BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12800
         (134 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0KHY3|Y1004_DROME Extracellular domains-containing protein CG31004 OS=Drosophila
           melanogaster GN=CG31004 PE=1 SV=1
          Length = 1431

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 58  ADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFR 117
            D+   +G  P     ++VGFNAGNGT++YEY PYSQ   IRDL  RGWANGFPGRHIFR
Sbjct: 367 GDTTKGEGGVP-----AYVGFNAGNGTQAYEYNPYSQNMVIRDLANRGWANGFPGRHIFR 421

Query: 118 IDENIML 124
           +DE I++
Sbjct: 422 VDEQILI 428


>sp|P34501|YMS5_CAEEL Uncharacterized protein K03H1.5 OS=Caenorhabditis elegans
           GN=K03H1.5 PE=1 SV=2
          Length = 1385

 Score = 33.1 bits (74), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 14/56 (25%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF------PGRHIFRIDENIM 123
           +  GFN GNGT  Y   PYS         GR W  G+      PGR I R+DE I+
Sbjct: 405 AMAGFNGGNGTGWYG-LPYSGE-------GRLWKLGYFSNVLTPGRWIHRVDEVII 452


>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens
            GN=VPS13B PE=1 SV=2
          Length = 4022

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 24/127 (18%)

Query: 1    IGRESNESLESSGKKSRRPS------FISGRSFASASRILNQHFPNLQLTKSKSGD---- 50
            I + S  S     + SR+ S      FI    F +ASRI    +  + L+KSKS +    
Sbjct: 1808 IEQHSGASQHRIARPSRQSSIVKNLNFIPFDIFITASRISLMTYSCMALSKSKSQEQKNN 1867

Query: 51   --TSKHTLSADSLDSKGQSP----------EMHRRSFVGFNAGN--GTRSYEYYPYSQRS 96
              T K +L+   +DS    P          E   RS + F +G   G  S E    S RS
Sbjct: 1868 EKTDKSSLNLPEVDSDVAKPNQACISTVTAEDLLRSSISFPSGKKIGVLSLESLHASTRS 1927

Query: 97   TIRDLVG 103
            + R  +G
Sbjct: 1928 SARQALG 1934


>sp|A1S605|RMF_SHEAM Ribosome modulation factor OS=Shewanella amazonensis (strain ATCC
           BAA-1098 / SB2B) GN=rmf PE=3 SV=1
          Length = 58

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 73  RSFV-GFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGR 113
           R+F  GF AG G RS E  PYS   +    +G GW  G  GR
Sbjct: 11  RAFAKGFQAGVGGRSKEMCPYSNLDSRSQWLG-GWREGVDGR 51


>sp|O42958|PAT1_SCHPO DNA topoisomerase 2-associated protein pat1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPBC19G7.10c PE=3
           SV=2
          Length = 754

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 6   NESLESSGKKSRRPSFISGRSFASASRILNQHFPNL 41
           NESLE+S K   RP FIS  S     R+L + FP+L
Sbjct: 509 NESLEASSKT--RPPFISIISHPKGMRLLPRLFPHL 542


>sp|Q2INY3|SECA_ANADE Protein translocase subunit SecA OS=Anaeromyxobacter dehalogenans
           (strain 2CP-C) GN=secA PE=3 SV=2
          Length = 945

 Score = 28.9 bits (63), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 50  DTSKHTLSADS-LDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWAN 108
           D  K+ L  D  ++ + +S    RR  +GF AG     YE  P +++ T  + V   WA+
Sbjct: 647 DIRKNLLEYDDVMNQQRRSIYRLRRMVLGFGAGVPVVEYEEDPKTRKKTRHEQVFT-WAD 705

Query: 109 GFPGRHIFRIDENIMLEL 126
              G H+  + E++++E+
Sbjct: 706 A--GEHMLDLVEDLVVEM 721


>sp|P08395|SPPA_ECOLI Protease 4 OS=Escherichia coli (strain K12) GN=sppA PE=1 SV=2
          Length = 618

 Score = 28.9 bits (63), Expect = 10.0,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)

Query: 36  QHFPNLQ-----LTKSKSGDTSKHTLSADSLDSKGQSPEMHR---RSFVGFNAGNGTRSY 87
           Q FP  Q     LTK+  GDT+K+ L    +D+   S E+ +   + F         R+ 
Sbjct: 253 QVFPGAQGLLEGLTKT-GGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAI 311

Query: 88  EYYPYSQRSTIR--DLVGRGWANG 109
            YY Y+ ++     D +G  +ANG
Sbjct: 312 SYYDYALKTPADTGDSIGVVFANG 335


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,677,570
Number of Sequences: 539616
Number of extensions: 1944280
Number of successful extensions: 3456
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 18
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)