Query psy12800
Match_columns 134
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:59:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 66.5 2.4 8.1E-05 32.6 1.6 46 72-118 2-51 (141)
2 1jke_A O145, D-Tyr-trnaTyr dea 45.8 15 0.00052 27.7 3.0 33 5-37 77-109 (145)
3 1j7g_A D-tyrosyl-tRNA(Tyr) dea 45.2 15 0.00053 27.7 3.0 33 5-37 77-109 (144)
4 2dbo_A D-tyrosyl-tRNA(Tyr) dea 43.8 17 0.00058 27.6 3.0 33 5-37 77-109 (148)
5 3ko5_A D-tyrosyl-tRNA(Tyr) dea 40.6 20 0.00069 27.5 3.0 33 5-37 87-119 (164)
6 2q03_A Uncharacterized protein 37.5 16 0.00056 26.9 2.0 43 77-119 91-134 (138)
7 2ooj_A Hypothetical protein; s 31.3 24 0.00083 26.0 2.1 44 77-120 88-131 (141)
8 1igd_A Protein G; immunoglobul 20.8 28 0.00097 23.4 0.7 13 105-117 39-51 (61)
9 3orj_A Sugar-binding protein; 17.4 79 0.0027 27.9 2.9 37 72-108 306-343 (439)
10 1o22_A Orphan protein TM0875; 17.0 45 0.0015 25.9 1.1 36 82-120 119-165 (170)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=66.46 E-value=2.4 Score=32.58 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=26.0
Q ss_pred ccceeeeeccCceeeEEeecCCCccccccc----ccccccCCCCcceEEee
Q psy12800 72 RRSFVGFNAGNGTRSYEYYPYSQRSTIRDL----VGRGWANGFPGRHIFRI 118 (134)
Q Consensus 72 ipAqvGFNaGnGt~~y~y~P~Sqt~~I~dL----~~ts~~ng~PGRwvFRI 118 (134)
.+.|+..+..+-.|||- +|+++.++...- ...=|-.-|-|.||-|=
T Consensus 2 ~~~~~~~~~~~~qRyFr-IPf~rp~~~~k~~~~~k~G~WYAHFdGqwIaRQ 51 (141)
T 3h8d_A 2 SARQQEIDMKRQQRFFR-IPFIRPADQYKDPQNKKKGWWYAHFDGPWIARQ 51 (141)
T ss_dssp ---------CCSEEEEE-EEEECGGGTTSCGGGCCEEEEEEEEETTEEEEE
T ss_pred CccccccCccccceeEe-cccccccccccCCCCcccceEEEeeCChhhhee
Confidence 45666778889999999 999998754322 22234445888888874
No 2
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=45.80 E-value=15 Score=27.74 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.4
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhh
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQH 37 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqh 37 (134)
||-.|-+..+|-+||+|..+-.-.-|.+|-++-
T Consensus 77 SQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f 109 (145)
T 1jke_A 77 SQFTLAADTERGMRPSFSKGASPDRAEALYDYF 109 (145)
T ss_dssp ECGGGGSBCSSSSSCBCSSBCCHHHHHHHHHHH
T ss_pred EccccccccCCCCCCCccccCCHHHHHHHHHHH
Confidence 788898999999999999988888888887653
No 3
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase, structural genomics, hypothetical structure 2 function project, S2F; 1.64A {Haemophilus influenzae rd KW20} SCOP: c.110.1.1
Probab=45.23 E-value=15 Score=27.68 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=28.4
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhh
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQH 37 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqh 37 (134)
||-.|-+..+|-+||+|..+-.-.-|.+|-++-
T Consensus 77 SQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f 109 (144)
T 1j7g_A 77 SQFTLAADTQKGLRPSFSKGASPALANELYEYF 109 (144)
T ss_dssp ECGGGGCBCSSTTSCBCTTBCCHHHHHHHHHHH
T ss_pred EccccccccCCCCCCCccccCCHHHHHHHHHHH
Confidence 788899999999999999988888888887653
No 4
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=43.85 E-value=17 Score=27.58 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=28.4
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhh
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQH 37 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqh 37 (134)
||-.|-+..+|-+||+|..+-.-.-|.+|-++-
T Consensus 77 SQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f 109 (148)
T 2dbo_A 77 SQFTLYANVKKGRRPSFEEAEEPKRAKELYEKF 109 (148)
T ss_dssp ECGGGGCBCSSSSSCBCTTBCCHHHHHHHHHHH
T ss_pred EeeecccccCCCCCCCccccCCHHHHHHHHHHH
Confidence 788888889999999999988888888887663
No 5
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A 3lmu_A 3lmv_A*
Probab=40.58 E-value=20 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=27.9
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhh
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQH 37 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqh 37 (134)
||-.|-+..+|-+||+|..+-.-.-|..|.++-
T Consensus 87 SQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f 119 (164)
T 3ko5_A 87 SQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKI 119 (164)
T ss_dssp ECGGGGCBCSSSSSCBCTTBCCHHHHHHHHHHH
T ss_pred EccccccccCCCCCCcccccCCHHHHHHHHHHH
Confidence 688888888999999998888888888887653
No 6
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=37.51 E-value=16 Score=26.93 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=32.6
Q ss_pred eeeccCceeeEEeecCCCcccccccccccccCCC-CcceEEeec
Q psy12800 77 GFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF-PGRHIFRID 119 (134)
Q Consensus 77 GFNaGnGt~~y~y~P~Sqt~~I~dL~~ts~~ng~-PGRwvFRID 119 (134)
-|++|.-...|+-+|+|-|.++..|..+..-.-. +|.|-|++|
T Consensus 91 t~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~~~G~h~Y~~~ 134 (138)
T 2q03_A 91 LFAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQIT 134 (138)
T ss_dssp EEETTEEEEEEEECTTCCEETTTTEEEEEEEEECSTTEEEEEEE
T ss_pred EEcCCcceEEEEEeCCCccccccCcEEEEEEEEecCCceEEEEE
Confidence 3578888888998999999999988877643322 477777765
No 7
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=31.26 E-value=24 Score=26.03 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=29.5
Q ss_pred eeeccCceeeEEeecCCCcccccccccccccCCCCcceEEeech
Q psy12800 77 GFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE 120 (134)
Q Consensus 77 GFNaGnGt~~y~y~P~Sqt~~I~dL~~ts~~ng~PGRwvFRIDe 120 (134)
-|++|.-...|+-+|+|-|.++..|..+..-.-.=|.|.|.+|=
T Consensus 88 t~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~~~~G~h~y~ldy 131 (141)
T 2ooj_A 88 IMTDGQNRLHLEVVPHSGAGELTGLYGTMAISIENGQHFYEFSF 131 (141)
T ss_dssp EECC--CEEEEEECTTCCEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred EEcCCcceEEEEEeCCCccccccCcEEEEEEEEcCCeEEEEEEE
Confidence 35788888889989999999999877666332222555565553
No 8
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=20.75 E-value=28 Score=23.38 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.4
Q ss_pred cccCCCCcceEEe
Q psy12800 105 GWANGFPGRHIFR 117 (134)
Q Consensus 105 s~~ng~PGRwvFR 117 (134)
-|.||++|-|.|-
T Consensus 39 aN~Ngvdgew~yd 51 (61)
T 1igd_A 39 ANDNGVDGVWTYD 51 (61)
T ss_dssp HHHTTCCCEEEEE
T ss_pred hhcCCCCceEeec
Confidence 3578899999884
No 9
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=17.36 E-value=79 Score=27.86 Aligned_cols=37 Identities=30% Similarity=0.563 Sum_probs=28.7
Q ss_pred ccceeeeeccCcee-eEEeecCCCcccccccccccccC
Q psy12800 72 RRSFVGFNAGNGTR-SYEYYPYSQRSTIRDLVGRGWAN 108 (134)
Q Consensus 72 ipAqvGFNaGnGt~-~y~y~P~Sqt~~I~dL~~ts~~n 108 (134)
|.-|-|||.|.=.| -|+|+|+=+...|+-..+++|--
T Consensus 306 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
T 3orj_A 306 ICGQNGFNGGEWERDCYNYVPWLVDGKIVPFQTTGWQT 343 (439)
T ss_dssp EESSSCCCSSCCSSSEEEECTTBSSSSBCCBCCSSCEE
T ss_pred EEEecCcCcccccccceeeccccccCeEeeeeccCceE
Confidence 45566777665443 28899999999999999999853
No 10
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=16.97 E-value=45 Score=25.91 Aligned_cols=36 Identities=28% Similarity=0.651 Sum_probs=25.3
Q ss_pred CceeeEEeecCCCcc-----cc-cc-----cccccccCCCCcceEEeech
Q psy12800 82 NGTRSYEYYPYSQRS-----TI-RD-----LVGRGWANGFPGRHIFRIDE 120 (134)
Q Consensus 82 nGt~~y~y~P~Sqt~-----~I-~d-----L~~ts~~ng~PGRwvFRIDe 120 (134)
+|.+|--|+|||.-- ++ .+ .++.+|. ||.+-|-+-|
T Consensus 119 ~~n~y~~yvpys~vk~knr~e~v~~fmkyffeskgw~---pg~y~f~vqe 165 (170)
T 1o22_A 119 EKNWYKIYVPYSSVKKKNRNELVEEFMKYFFESKGWN---PGEYTFSVQE 165 (170)
T ss_dssp ETTEEEEEEEGGGSTTCCHHHHHHHHHHHHHHHHTCC---GGGEEEEEEE
T ss_pred CCcEEEEEeehHHhhhccHHHHHHHHHHHHHhccCCC---CCceeEehhh
Confidence 577889999999642 11 11 3567775 8999998765
Done!