Query psy12800
Match_columns 134
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 19:59:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jkea_ c.110.1.1 (A:) D-Tyr t 45.4 7.4 0.00054 27.5 3.0 34 5-38 77-110 (145)
2 d1j7ga_ c.110.1.1 (A:) D-Tyr t 45.1 7.3 0.00053 27.5 3.0 34 5-38 77-110 (144)
3 d2q03a1 b.159.2.1 (A:5-137) Un 18.6 32 0.0023 23.6 2.4 42 78-119 87-129 (133)
4 d1o22a_ d.238.1.1 (A:) Hypothe 15.9 23 0.0017 25.2 1.1 36 82-120 102-148 (149)
5 d2hg6a1 d.364.1.1 (A:1-106) Hy 13.2 59 0.0043 22.0 2.6 27 74-100 17-43 (106)
6 d2ooja1 b.159.2.1 (A:2-134) Hy 12.4 50 0.0037 22.7 2.1 42 78-119 87-128 (133)
7 d3buxb3 d.93.1.1 (B:264-351) C 12.2 36 0.0026 22.5 1.2 11 110-120 24-34 (88)
8 d1w0ha_ c.55.3.5 (A:) Exonucle 12.0 28 0.002 22.2 0.5 15 97-111 9-23 (200)
9 d1uhra_ a.42.1.1 (A:) SWI/SNF 11.5 48 0.0035 21.0 1.6 24 26-49 70-93 (93)
10 d1tc5a_ c.110.1.1 (A:) probabl 11.3 39 0.0028 24.4 1.2 33 5-38 91-123 (187)
No 1
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
Probab=45.43 E-value=7.4 Score=27.49 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=29.0
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhhc
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQHF 38 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqhl 38 (134)
||=.|-+..+|-+||+|..+-.-..|..|.++-+
T Consensus 77 SQFTL~a~~~KG~rPsF~~Aa~p~~A~~ly~~f~ 110 (145)
T d1jkea_ 77 SQFTLAADTERGMRPSFSKGASPDRAEALYDYFV 110 (145)
T ss_dssp ECGGGGSBCSSSSSCBCSSBCCHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCCCceecccCCHHHHHHHHHHHH
Confidence 6778888889999999999999999998877644
No 2
>d1j7ga_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Haemophilus influenzae [TaxId: 727]}
Probab=45.13 E-value=7.3 Score=27.48 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=28.9
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhhc
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQHF 38 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqhl 38 (134)
||=.|-+..+|-+||+|..+-.-.-|..|.++-+
T Consensus 77 SQFTL~a~~~KG~RPsF~~Aa~p~~A~~ly~~fv 110 (144)
T d1j7ga_ 77 SQFTLAADTQKGLRPSFSKGASPALANELYEYFI 110 (144)
T ss_dssp ECGGGGCBCSSTTSCBCTTBCCHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcceeeecccCHHHHHHHHHHHH
Confidence 6778888889999999999999999988887543
No 3
>d2q03a1 b.159.2.1 (A:5-137) Uncharacterized protein Sden_2034 {Shewanella denitrificans [TaxId: 192073]}
Probab=18.56 E-value=32 Score=23.62 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=29.9
Q ss_pred eeccCceeeEEeecCCCcccccccccccc-cCCCCcceEEeec
Q psy12800 78 FNAGNGTRSYEYYPYSQRSTIRDLVGRGW-ANGFPGRHIFRID 119 (134)
Q Consensus 78 FNaGnGt~~y~y~P~Sqt~~I~dL~~ts~-~ng~PGRwvFRID 119 (134)
|++|.-.--|+-+|.|-+.++..|....- ...-+|.|-|.+|
T Consensus 87 ~~~g~~~~~~~IVpgSgTGeL~Gl~Gsg~~~~~e~G~~~Y~~~ 129 (133)
T d2q03a1 87 FAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQIT 129 (133)
T ss_dssp EETTEEEEEEEECTTCCEETTTTEEEEEEEEECSTTEEEEEEE
T ss_pred EcCCceeEEEEEEcCCCCccccCcEEEEEEEEcCCCeeEEEEE
Confidence 35555555577799999999998888753 2234788888776
No 4
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=15.89 E-value=23 Score=25.20 Aligned_cols=36 Identities=28% Similarity=0.651 Sum_probs=24.7
Q ss_pred CceeeEEeecCCCcc-----cc-cc-----cccccccCCCCcceEEeech
Q psy12800 82 NGTRSYEYYPYSQRS-----TI-RD-----LVGRGWANGFPGRHIFRIDE 120 (134)
Q Consensus 82 nGt~~y~y~P~Sqt~-----~I-~d-----L~~ts~~ng~PGRwvFRIDe 120 (134)
+|.+|--|+|||.-- ++ .+ .++.+|. ||.+-|-+-|
T Consensus 102 ~~n~y~~yvpys~vk~knr~e~v~~fmkyffeskgw~---pg~y~f~vqe 148 (149)
T d1o22a_ 102 EKNWYKIYVPYSSVKKKNRNELVEEFMKYFFESKGWN---PGEYTFSVQE 148 (149)
T ss_dssp ETTEEEEEEEGGGSTTCCHHHHHHHHHHHHHHHHTCC---GGGEEEEEEE
T ss_pred CCcEEEEEeehHHhhhccHHHHHHHHHHHHHhccCCC---CCceeEEEee
Confidence 577889999999642 11 11 3567775 8899987754
No 5
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.17 E-value=59 Score=22.00 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=17.6
Q ss_pred ceeeeeccCceeeEEeecCCCcccccc
Q psy12800 74 SFVGFNAGNGTRSYEYYPYSQRSTIRD 100 (134)
Q Consensus 74 AqvGFNaGnGt~~y~y~P~Sqt~~I~d 100 (134)
.+||||+-.|+.-.-|--.|--.+|.|
T Consensus 17 GFVGfn~K~G~~ivRFSEDsFGmDVad 43 (106)
T d2hg6a1 17 GFVGFNRKTGRYIVRFSEDSFGMDVAD 43 (106)
T ss_dssp CEEEEETTTTEEEEESCGGGCSSSSCG
T ss_pred ccccccccCceEEEEecccccCCcccc
Confidence 489999999986555433444445544
No 6
>d2ooja1 b.159.2.1 (A:2-134) Hypothetical protein SO1590 {Shewanella oneidensis [TaxId: 70863]}
Probab=12.44 E-value=50 Score=22.71 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=24.8
Q ss_pred eeccCceeeEEeecCCCcccccccccccccCCCCcceEEeec
Q psy12800 78 FNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRID 119 (134)
Q Consensus 78 FNaGnGt~~y~y~P~Sqt~~I~dL~~ts~~ng~PGRwvFRID 119 (134)
|++|.-..-|+-+|.|-|.++..|....---.--|.|-|..|
T Consensus 87 ~~~g~~~~~~~IVpgSgTGeL~Gl~G~~~i~~e~G~h~y~~d 128 (133)
T d2ooja1 87 MTDGQNRLHLEVVPHSGAGELTGLYGTMAISIENGQHFYEFS 128 (133)
T ss_dssp ECC--CEEEEEECTTCCEETTTTEEEEEEEEEETTEEEEEEE
T ss_pred EcCCccceEEEEEcCCCCccccccEEEEEEEEeCCeEEEEEE
Confidence 355555555777899999888876666532223455555544
No 7
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.15 E-value=36 Score=22.52 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.4
Q ss_pred CCcceEEeech
Q psy12800 110 FPGRHIFRIDE 120 (134)
Q Consensus 110 ~PGRwvFRIDe 120 (134)
-||.++||..-
T Consensus 24 kPGSYiFRlSC 34 (88)
T d3buxb3 24 KPGSYIFRLSC 34 (88)
T ss_dssp STTEEEEEECS
T ss_pred CCCceEEeecc
Confidence 69999999864
No 8
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.02 E-value=28 Score=22.23 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=10.5
Q ss_pred cccccccccccCCCC
Q psy12800 97 TIRDLVGRGWANGFP 111 (134)
Q Consensus 97 ~I~dL~~ts~~ng~P 111 (134)
-|.|+|+|++.++.|
T Consensus 9 iv~D~EtT~~~~~~~ 23 (200)
T d1w0ha_ 9 CIIDFEATCEEGNPP 23 (200)
T ss_dssp EECCCEECCCTTCCT
T ss_pred EEEEEecCCCCCCCC
Confidence 688999886655433
No 9
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.45 E-value=48 Score=21.04 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=17.7
Q ss_pred hhhhHHHHhhhhcCCCccCCCCCC
Q psy12800 26 SFASASRILNQHFPNLQLTKSKSG 49 (134)
Q Consensus 26 s~asatriinqhlfg~~~~~~k~g 49 (134)
.+-.-.++|++||.-.+-.++++|
T Consensus 70 ~~~~l~~~L~~Hl~p~eP~~~~~~ 93 (93)
T d1uhra_ 70 KFSEIPQRLHALLMPPEPSGPSSG 93 (93)
T ss_dssp EGGGSHHHHHHHEECSSCCCSSCC
T ss_pred cHHHHHHHHHhhCCCCCCCCCCCC
Confidence 345667999999988876666554
No 10
>d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA deacylase {Leishmania major [TaxId: 5664]}
Probab=11.27 E-value=39 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.7
Q ss_pred chhhhccCCCCccCCccccCchhhhHHHHhhhhc
Q psy12800 5 SNESLESSGKKSRRPSFISGRSFASASRILNQHF 38 (134)
Q Consensus 5 s~esl~~~~~k~~r~~f~p~ks~asatriinqhl 38 (134)
||=.|-+.. |-+||+|..+-.-.-|..|.++-+
T Consensus 91 SQFTL~a~~-KG~RPsF~~Aa~pe~A~~Ly~~fv 123 (187)
T d1tc5a_ 91 PQASLGGKV-KGRSVQFHQLVAKDVGAALYDRFC 123 (187)
T ss_dssp ECGGGGCEE-ETTEEECTTBCCHHHHHHHHHHHH
T ss_pred EeEEEEeec-CCCCCChhhcCCHHHHHHHHHHHH
Confidence 566677764 899999999998899999888643
Done!