BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy12800
IGRESNESLESSGKKSRRPSFISGRSFASASRILNQHFPNLQLTKSKSGDTSKHTLSADS
LDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE
NIMLELTLGEIQLD

High Scoring Gene Products

Symbol, full name Information P value
mesh protein from Drosophila melanogaster 9.5e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy12800
        (134 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0051004 - symbol:mesh "mesh" species:7227 "Drosoph...   221  9.5e-17   1


>FB|FBgn0051004 [details] [associations]
            symbol:mesh "mesh" species:7227 "Drosophila melanogaster"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0007160 "cell-matrix
            adhesion" evidence=IEA] [GO:0019991 "septate junction assembly"
            evidence=IMP] [GO:0005920 "smooth septate junction" evidence=IDA]
            [GO:0007156 "homophilic cell adhesion" evidence=IMP] [GO:0061028
            "establishment of endothelial barrier" evidence=IMP]
            InterPro:IPR003886 Pfam:PF06119 PROSITE:PS51220 SMART:SM00539
            EMBL:AE014297 GO:GO:0016021 Gene3D:2.60.40.10 InterPro:IPR013783
            GO:GO:0007160 InterPro:IPR014756 SUPFAM:SSF81296 InterPro:IPR001846
            Pfam:PF00094 SMART:SM00216 PROSITE:PS51233 InterPro:IPR000436
            Pfam:PF00084 SMART:SM00032 SUPFAM:SSF57535 PROSITE:PS50923
            InterPro:IPR005533 Pfam:PF03782 SMART:SM00723 PROSITE:PS50856
            eggNOG:NOG299565 GeneTree:ENSGT00700000104580 EMBL:BT032891
            EMBL:BT011360 EMBL:AY122109 RefSeq:NP_001163781.1
            RefSeq:NP_733418.1 RefSeq:NP_733419.1 UniGene:Dm.10424
            ProteinModelPortal:Q0KHY3 SMR:Q0KHY3 STRING:Q0KHY3 PaxDb:Q0KHY3
            PRIDE:Q0KHY3 EnsemblMetazoa:FBtr0085779 EnsemblMetazoa:FBtr0085780
            GeneID:43688 KEGG:dme:Dmel_CG31004 UCSC:CG31004-RA
            FlyBase:FBgn0051004 InParanoid:Q0KHY3 OrthoDB:EOG47SQVK
            PhylomeDB:Q0KHY3 GenomeRNAi:43688 NextBio:835253 Bgee:Q0KHY3
            Uniprot:Q0KHY3
        Length = 1431

 Score = 221 (82.9 bits), Expect = 9.5e-17, P = 9.5e-17
 Identities = 42/72 (58%), Positives = 51/72 (70%)

Query:    54 HT-LSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPG 112
             HT    D+   +G  P     ++VGFNAGNGT++YEY PYSQ   IRDL  RGWANGFPG
Sbjct:   362 HTEAGGDTTKGEGGVP-----AYVGFNAGNGTQAYEYNPYSQNMVIRDLANRGWANGFPG 416

Query:   113 RHIFRIDENIML 124
             RHIFR+DE I++
Sbjct:   417 RHIFRVDEQILI 428


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      134       134   0.00091  102 3  11 23  0.46    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  527 (56 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.00u 0.09s 15.09t   Elapsed:  00:00:06
  Total cpu time:  15.00u 0.09s 15.09t   Elapsed:  00:00:07
  Start:  Thu Aug 15 11:13:53 2013   End:  Thu Aug 15 11:14:00 2013

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