RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12800
         (134 letters)



>gnl|CDD|147987 pfam06119, NIDO, Nidogen-like.  This is a nidogen-like domain
           (NIDO) domain and is an extracellular domain found in
           nidogen and hypothetical proteins of unknown function.
          Length = 90

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 76  VGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE 120
            GF+AG+G R +   P S+  ++R+L       G PGR IFR+  
Sbjct: 47  AGFSAGDGNRFFTL-PGSRTESVRNLAQS-SNVGVPGRWIFRVGG 89


>gnl|CDD|214712 smart00539, NIDO, Extracellular domain of unknown function in
           nidogen (entactin) and hypothetical proteins. 
          Length = 152

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 76  VGFNAGNGT------RSYEYYPYSQRSTIRDLVGRGWANGFPGRHI 115
            GFN G+GT       S E    +        +   W     G  I
Sbjct: 107 AGFNGGDGTFSYTLPASGEENIKNLAEGSNVGIPGRWMFRVDGAEI 152


>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase. 
          Length = 302

 Score = 27.4 bits (62), Expect = 1.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 79  NAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF 110
            A  G   ++ Y    R    DL+ R  A G+
Sbjct: 106 AAAGGPLWFQLYVPKDRELTEDLLERAEAAGY 137


>gnl|CDD|145929 pfam03043, Herpes_UL87, Herpesvirus UL87 family.  Members of this
           family are functionally uncharacterized. This family
           groups together EBV BcRF1, HSV-6 U58, HVS-1 24 and HCMV
           UL87. The proteins range from 575 to 950 amino acids in
           length.
          Length = 533

 Score = 27.6 bits (62), Expect = 2.4
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 16  SRRPSFISGRSFASASRILNQHFPNLQLTKSKSGDTSKH 54
           +++P  + G S       +   FP + + K K      +
Sbjct: 69  AQQPITVRGLSLLRFKLQVLYLFPQVTIKKLKRDPGKGN 107


>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
           Provisional.
          Length = 182

 Score = 26.7 bits (59), Expect = 3.2
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 23/107 (21%)

Query: 13  GKKSRRPSFISGRSFASASRILNQHFP-----------NLQLTKSKSG-DTSKHTLSADS 60
           G+K     FI  R F   + I NQ+               +    ++G   SKHT++A+S
Sbjct: 42  GEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAES 101

Query: 61  ---LDSKGQSPE--------MHRRSFVGFNAGNGTRSYEYYPYSQRS 96
              LDSK  +P+         H      +       S + Y    +S
Sbjct: 102 MQMLDSKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYMNQAQS 148


>gnl|CDD|162728 TIGR02146, LysS_fung_arch, homocitrate synthase.  This model
           includes the yeast LYS21 gene which carries out the
           first step of the alpha-aminoadipate (AAA) lysine
           biosynthesis pathway. A related pathway is found in
           Thermus thermophilus. This enzyme is closely related to
           2-isopropylmalate synthase (LeuA) and citramalate
           synthase (CimA), both of which are present in the
           euryarchaeota. Some archaea have a separate homocitrate
           synthase (AksA) which also synthesizes longer
           homocitrate analogs.
          Length = 344

 Score = 25.9 bits (57), Expect = 7.4
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 69  EMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTL 128
            +H ++ +G       R+YE+ P       R ++         G+H  +      L + L
Sbjct: 281 GIHVKAILGNP-----RTYEFLPPEVFGRKRHIL----IARLTGKHAIK-ARKEKLGVKL 330

Query: 129 GEIQLD 134
            E +L 
Sbjct: 331 IEEELK 336


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,449,396
Number of extensions: 529856
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 14
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)