RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12800
         (134 letters)



>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 200

 Score = 24.9 bits (53), Expect = 3.4
 Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 3/42 (7%)

Query: 34  LNQHFPNLQLTKSKSGDTSKHTLSADSLDSKGQSPEMHRRSF 75
           L + F +     +    T +         + G+ P   R  +
Sbjct: 153 LKEKFGDFGSGYASDPRTREV---LKEWIASGRIPSCVRMRW 191


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
           encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 24.0 bits (52), Expect = 7.7
 Identities = 6/11 (54%), Positives = 6/11 (54%)

Query: 99  RDLVGRGWANG 109
           RD   RGW N 
Sbjct: 94  RDQSDRGWGNH 104


>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
           2 [TaxId: 11060]}
          Length = 297

 Score = 23.9 bits (52), Expect = 7.9
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 99  RDLVGRGWANG 109
             +V RGW NG
Sbjct: 94  HSMVDRGWGNG 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,541
Number of extensions: 17943
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 7
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.9 bits)