BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12802
(1637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 20/208 (9%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP 105
S V+G+AFSPD +A A D + ++ + +++ V + + DG
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 106 IIYGQSDGK-IKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTED 164
I SD K +K + QTL +S V + + G + S D ++ +
Sbjct: 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----- 330
Query: 165 ASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYK 222
+ Q + H + +++ P G +A+ S D+ V ++ +G++ + + +
Sbjct: 331 -NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389
Query: 223 EREFTVACSSPSGQAVVVGSYD-NIKLF 249
F SP GQ + S D +KL+
Sbjct: 390 GVAF-----SPDGQTIASASDDKTVKLW 412
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 28/212 (13%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP 105
S V+G+AFSPD +A A D + ++ + +++ V + + DG
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 106 IIYGQSDGK-IKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTED 164
I SD K +K + QTL +S V + + G + S D ++ +
Sbjct: 71 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW----- 125
Query: 165 ASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTA 218
+ G+++Q H + +++ P G +A+ S D+ V ++ +G++ + T
Sbjct: 126 -----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TL 176
Query: 219 PHYKEREFTVACSSPSGQAVVVGSYD-NIKLF 249
+ + VA SP GQ + S D +KL+
Sbjct: 177 TGHSSSVWGVAF-SPDGQTIASASDDKTVKLW 207
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP 105
S V+G+AFSPD +A A D + ++ + +++ V + + DG
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQ 521
Query: 106 IIYGQSDGK-IKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI 156
I SD K +K + QTL +S V + + G + S +D ++
Sbjct: 522 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
>pdb|1BCY|A Chain A, Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E + KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELK----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|2H0L|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E + T G L+N K E KFE L++ K + + Y++ H
Sbjct: 44 NAQRQQIAEEFE-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 98
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 99 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 138
>pdb|2H0K|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
pdb|2H0K|B Chain B, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E + T G L+N K E KFE L++ K + + Y++ H
Sbjct: 44 NAQRQQIAEEFE-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 98
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 99 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 138
>pdb|1BC3|A Chain A, Recombinant Rat Annexin V, Triple Mutant (T72k, S144k,
S228k)
Length = 319
Score = 34.7 bits (78), Expect = 0.45, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E + KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELK----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1BC1|A Chain A, Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k,
S228k, S303k)
Length = 319
Score = 34.7 bits (78), Expect = 0.46, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E + KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELK----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1BCZ|A Chain A, Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 34.3 bits (77), Expect = 0.54, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELS----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1BC0|A Chain A, Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 34.3 bits (77), Expect = 0.60, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1BCW|A Chain A, Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 34.3 bits (77), Expect = 0.66, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELA----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|2H0M|A Chain A, Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 34.3 bits (77), Expect = 0.66, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|2RAN|A Chain A, Rat Annexin V Crystal Structure: Ca2+-Induced Conformational
Changes
Length = 316
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 44 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 98
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 99 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 138
>pdb|1N41|A Chain A, Crystal Structure Of Annexin V K27e Mutant
Length = 319
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|2IE6|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Xenon
pdb|2IE7|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Nitrous Oxide
Length = 318
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 44 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 98
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 99 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 138
>pdb|1N44|A Chain A, Crystal Structure Of Annexin V R23e Mutant
Length = 319
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1A8A|A Chain A, Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B|A Chain A, Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 319
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|1N42|A Chain A, Crystal Structure Of Annexin V R149e Mutant
Length = 319
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 1291 NAER--IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWN 1348
NA+R IA E T G L+N K E KFE L++ K + + Y++ H
Sbjct: 45 NAQRQQIAEEFK-TLFGRDLVNDMKSELT----GKFEKLIVALMKPSRLYDAYELKHALK 99
Query: 1349 DA-------LRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381
A + P +L ++Q YE+E +N+ D+
Sbjct: 100 GAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDV 139
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P
Length = 388
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 1369 YEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLK 1428
+ I T++SK+ L T+ +WE N + + M +I N ++T
Sbjct: 191 FHASIGTHLSKEY--LNTKTGKWEPNLDLF----------------MARIGNFPDRVTNM 232
Query: 1429 YLNHDQSYKILPSLVPKLMEFKQYDLAVRVYLN-IDMVKEAVDIFIYTQNWNKARKLCAE 1487
Y N+ K L + P L EF DL + N +D V +D I+ ++ A L
Sbjct: 233 YFNYAVVAKALWKIQPYLPEFSFADLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLT 292
Query: 1488 LKPEYLSYVENQYK 1501
LK E+ S +N K
Sbjct: 293 LKDEFRSRFKNVTK 306
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P
Length = 393
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 1369 YEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLK 1428
+ I T++SK+ L T+ +WE N + + M +I N ++T
Sbjct: 192 FHASIGTHLSKEY--LNTKTGKWEPNLDLF----------------MARIGNFPDRVTNM 233
Query: 1429 YLNHDQSYKILPSLVPKLMEFKQYDLAVRVYLN-IDMVKEAVDIFIYTQNWNKARKLCAE 1487
Y N+ K L + P L EF DL + N +D V +D I+ ++ A L
Sbjct: 234 YFNYAVVAKALWKIQPYLPEFSFCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLT 293
Query: 1488 LKPEYLSYVENQYK 1501
LK E+ S +N K
Sbjct: 294 LKDEFRSRFKNVTK 307
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For Oxidative
Protein Folding In The Cell
Length = 386
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 1365 LQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDVNLMVKILNEVTQ 1424
L + I T++SK+ L T+ +WE N + + M +I N +
Sbjct: 188 LVSGFHASIGTHLSKEY--LNTKTGKWEPNLDLF----------------MARIGNFPDR 229
Query: 1425 LTLKYLNHDQSYKILPSLVPKLMEFKQYDLAVRVYLN-IDMVKEAVDIFIYTQNWNKARK 1483
+T Y N+ K L + P L EF DL + N +D V +D I+ ++ A
Sbjct: 230 VTNMYFNYAVVAKALWKIQPYLPEFSFCDLVNKEIKNKMDNVISQLDTKIFNEDLVFAND 289
Query: 1484 LCAELKPEYLSYVENQYK 1501
L LK E+ S +N K
Sbjct: 290 LSLTLKDEFRSRFKNVTK 307
>pdb|1ZZG|A Chain A, Crystal Structure Of Hypothetical Protein Tt0462 From
Thermus Thermophilus Hb8
pdb|1ZZG|B Chain B, Crystal Structure Of Hypothetical Protein Tt0462 From
Thermus Thermophilus Hb8
Length = 415
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 711 FGKAILYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKI 770
FGK + L K EAE ++ LAE +++ L + E+ A+G + H + +T +
Sbjct: 335 FGKTLFQLL-----KAEAEATYEALAEAGQRVYALFLPEVSPYAVGWL-MQHLMWQTAFL 388
Query: 771 GEVW 774
GE+W
Sbjct: 389 GELW 392
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 19 FNLDIVRLRSEGNVAGIWAWRGQNGRKSYV--------------VKGLAFSPDSTKLAVA 64
+N D S G I + G +G K+ V V GL +SPD TK+A A
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 65 QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANK 124
+D I I+ + +K + I+ + ++W ++ ++G I + +
Sbjct: 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQL-GIIWTKQA-LVSISANGFINFVNPELGS 315
Query: 125 T-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASN 167
Q Y N + AL + G + S A+G I + ++ SN
Sbjct: 316 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359
>pdb|3C2H|A Chain A, Crystal Structure Of Sys-1 At 2.6a Resolution
pdb|3C2H|B Chain B, Crystal Structure Of Sys-1 At 2.6a Resolution
Length = 619
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 84 VICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASN 132
V+C+K ++ CP +W D P++ G ++ + AN + + N
Sbjct: 571 VVCDKILEHCPTRADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRFPEN 619
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQH 1019
+ +E+GD E + Y+ N YI G+ A ++ +KK + + + + ++ AQ
Sbjct: 214 IAKEFGDKAAERRAYSNLGNAYIFLGEFETA------SEYYKKTLLLARQLKDRAVEAQS 267
Query: 1020 VKTLAQHFKTVKDYKTAEKIY-SHCDMHEQIVD-------------MYHQTGQWEKAYAI 1065
+L + ++DY+ A + H + +++ D Y G ++A
Sbjct: 268 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 327
Query: 1066 AEQHLNV 1072
AE+HL +
Sbjct: 328 AEKHLEI 334
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQH 1019
+ +E+GD E + Y+ N YI G+ A ++ +KK + + + + ++ AQ
Sbjct: 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETA------SEYYKKTLLLARQLKDRAVEAQS 265
Query: 1020 VKTLAQHFKTVKDYKTAEKIY-SHCDMHEQIVD-------------MYHQTGQWEKAYAI 1065
+L + ++DY+ A + H + +++ D Y G ++A
Sbjct: 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325
Query: 1066 AEQHLNV 1072
AE+HL +
Sbjct: 326 AEKHLEI 332
>pdb|3C2G|A Chain A, Crystal Complex Of Sys-1POP-1 At 2.5a Resolution
pdb|3C2G|B Chain B, Crystal Complex Of Sys-1POP-1 At 2.5a Resolution
Length = 619
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 84 VICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASN 132
V+C+K ++ CP +W D P + G ++ + AN + + N
Sbjct: 571 VVCDKILEHCPTRADIWTIDRPXLEGLTNHRNSDIAKAANSLLSRFPEN 619
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 41 QNGRKSY-------VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC 93
++G+K Y + +A+SPD LA D II I+ + K++
Sbjct: 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI----ATGKLLHTLEGHAM 207
Query: 94 PVTTMVWLADGPIIYGQS-DGKIKAAHVK-ANKTQTLYASNSFV--VALC 139
P+ ++ + D ++ S DG IK V+ AN TL S+V VA C
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
>pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 190 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVAC-SSPSGQAVVVGSYDNIKL 248
G +A G DR+V + + D ++ PH + + V S G ++ SY+
Sbjct: 1 GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEA--- 57
Query: 249 FAWSPSKSVWEEQPNKTIPNL 269
A+ ++S+W + K P+L
Sbjct: 58 RAFGVTRSMWADDAKKLCPDL 78
>pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 190 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVAC-SSPSGQAVVVGSYDNIKL 248
G +A G DR+V + + D ++ PH + + V S G ++ SY+
Sbjct: 1 GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEA--- 57
Query: 249 FAWSPSKSVWEEQPNKTIPNL 269
A+ ++S+W + K P+L
Sbjct: 58 RAFGVTRSMWADDAKKLCPDL 78
>pdb|2P9W|A Chain A, Crystal Structure Of The Major Malassezia Sympodialis
Allergen Mala S 1
Length = 334
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 23 IVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKL 61
I R+ ++G +AW NG + G+ F P S KL
Sbjct: 161 IARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,050,449
Number of Sequences: 62578
Number of extensions: 2166464
Number of successful extensions: 5455
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 5420
Number of HSP's gapped (non-prelim): 65
length of query: 1637
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1525
effective length of database: 7,964,601
effective search space: 12146016525
effective search space used: 12146016525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)