Query psy12802
Match_columns 1637
No_of_seqs 1069 out of 6234
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 20:04:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-51 5.5E-56 555.6 83.0 723 5-978 7-803 (814)
2 3mkq_A Coatomer beta'-subunit; 100.0 5.3E-49 1.8E-53 531.0 74.8 746 44-1037 11-803 (814)
3 2ymu_A WD-40 repeat protein; u 100.0 3.2E-49 1.1E-53 510.0 68.9 540 7-652 12-576 (577)
4 1nr0_A Actin interacting prote 100.0 3.2E-49 1.1E-53 508.8 59.4 516 7-653 55-608 (611)
5 2ymu_A WD-40 repeat protein; u 100.0 1.2E-45 4.1E-50 476.6 64.9 504 8-616 54-577 (577)
6 1nr0_A Actin interacting prote 100.0 8E-46 2.7E-50 477.2 62.6 536 9-676 16-590 (611)
7 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-45 3.3E-49 512.5 59.0 539 8-653 612-1246(1249)
8 1pgu_A Actin interacting prote 100.0 2.3E-41 7.9E-46 440.9 57.5 533 9-653 16-611 (615)
9 3sfz_A APAF-1, apoptotic pepti 100.0 7.9E-42 2.7E-46 482.7 57.1 532 44-660 613-1210(1249)
10 1pgu_A Actin interacting prote 100.0 3.8E-40 1.3E-44 429.4 56.9 494 7-619 59-614 (615)
11 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-38 4.5E-43 423.5 62.8 588 9-649 15-821 (902)
12 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-38 1.4E-42 418.7 60.7 534 39-625 10-670 (902)
13 1xi4_A Clathrin heavy chain; a 100.0 3.4E-34 1.2E-38 361.3 56.8 622 783-1547 872-1550(1630)
14 1got_B GT-beta; complex (GTP-b 100.0 2.1E-35 7.2E-40 350.2 40.7 278 7-297 51-340 (340)
15 1vyh_C Platelet-activating fac 100.0 1.3E-35 4.4E-40 361.5 38.7 272 8-298 105-409 (410)
16 3ow8_A WD repeat-containing pr 100.0 1.2E-34 4.1E-39 339.5 38.3 276 5-299 26-320 (321)
17 4g56_B MGC81050 protein; prote 100.0 9.7E-35 3.3E-39 346.1 35.3 277 9-300 40-343 (357)
18 4gqb_B Methylosome protein 50; 100.0 9.4E-35 3.2E-39 342.4 34.4 276 9-302 28-333 (344)
19 2pbi_B Guanine nucleotide-bind 100.0 5.9E-34 2E-38 339.1 39.0 279 6-297 59-354 (354)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.1E-34 2.4E-38 337.6 38.6 287 9-304 13-339 (345)
21 3frx_A Guanine nucleotide-bind 100.0 1.1E-33 3.8E-38 331.7 39.3 280 7-301 13-318 (319)
22 3iz6_a 40S ribosomal protein R 100.0 4.4E-34 1.5E-38 344.5 31.9 292 5-301 60-376 (380)
23 4g56_B MGC81050 protein; prote 100.0 7.5E-34 2.6E-38 338.4 33.4 310 17-370 11-343 (357)
24 2ynn_A Coatomer subunit beta'; 100.0 3.5E-33 1.2E-37 325.1 38.1 275 5-299 7-301 (304)
25 1xi4_A Clathrin heavy chain; a 100.0 1.2E-26 4.2E-31 293.1 97.7 484 1049-1592 991-1576(1630)
26 1vyh_C Platelet-activating fac 100.0 4.3E-33 1.5E-37 339.3 36.7 276 45-368 107-409 (410)
27 3ow8_A WD repeat-containing pr 100.0 1.1E-32 3.7E-37 322.9 37.3 280 43-368 29-319 (321)
28 2ynn_A Coatomer subunit beta'; 100.0 2E-32 6.7E-37 318.8 38.9 281 44-370 11-302 (304)
29 2xzm_R RACK1; ribosome, transl 100.0 3.8E-32 1.3E-36 322.9 40.8 279 7-301 17-341 (343)
30 1got_B GT-beta; complex (GTP-b 100.0 3.6E-32 1.2E-36 322.4 39.5 278 43-367 52-340 (340)
31 3frx_A Guanine nucleotide-bind 100.0 2.7E-32 9.2E-37 319.9 37.6 291 42-371 13-318 (319)
32 2hes_X YDR267CP; beta-propelle 100.0 2.8E-32 9.6E-37 321.5 36.7 281 7-299 10-327 (330)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.1E-32 2.4E-36 320.4 40.0 302 44-373 13-338 (345)
34 4gqb_B Methylosome protein 50; 100.0 2.2E-32 7.4E-37 322.3 34.9 295 35-373 16-334 (344)
35 1r5m_A SIR4-interacting protei 100.0 3.9E-32 1.3E-36 335.5 37.6 330 10-370 44-425 (425)
36 1gxr_A ESG1, transducin-like e 100.0 4.4E-32 1.5E-36 323.0 36.5 312 9-368 7-335 (337)
37 1r5m_A SIR4-interacting protei 100.0 6.7E-32 2.3E-36 333.4 38.1 351 35-471 27-423 (425)
38 2pbi_B Guanine nucleotide-bind 100.0 1.4E-31 4.8E-36 318.6 38.3 278 44-367 62-354 (354)
39 4ery_A WD repeat-containing pr 100.0 3.2E-31 1.1E-35 311.0 40.4 275 8-298 20-310 (312)
40 1erj_A Transcriptional repress 100.0 2E-31 7E-36 322.9 38.3 270 10-299 63-388 (393)
41 2xzm_R RACK1; ribosome, transl 100.0 5.7E-31 1.9E-35 312.7 40.8 298 44-371 19-341 (343)
42 3iz6_a 40S ribosomal protein R 100.0 5.7E-32 1.9E-36 326.1 32.7 308 83-473 57-375 (380)
43 2j04_B YDR362CP, TAU91; beta p 100.0 5.9E-33 2E-37 343.1 24.3 262 10-300 132-428 (524)
44 2pm9_A Protein WEB1, protein t 100.0 1.2E-32 4E-37 338.9 26.1 344 12-371 13-415 (416)
45 2pm9_A Protein WEB1, protein t 100.0 6.7E-32 2.3E-36 332.2 31.1 365 46-473 12-414 (416)
46 3vl1_A 26S proteasome regulato 100.0 2.6E-31 8.9E-36 327.2 35.7 321 13-370 58-419 (420)
47 2hes_X YDR267CP; beta-propelle 100.0 1.7E-30 5.8E-35 306.3 36.9 290 44-370 12-328 (330)
48 4aow_A Guanine nucleotide-bind 100.0 4.5E-30 1.6E-34 306.0 40.0 280 8-302 35-339 (340)
49 1gxr_A ESG1, transducin-like e 100.0 5.8E-30 2E-34 304.7 39.4 270 9-298 49-335 (337)
50 3vl1_A 26S proteasome regulato 100.0 2.1E-30 7.2E-35 319.1 36.7 330 46-471 56-417 (420)
51 3dm0_A Maltose-binding peripla 100.0 2.2E-30 7.4E-35 339.8 38.8 278 7-299 378-692 (694)
52 4ery_A WD repeat-containing pr 100.0 1E-29 3.6E-34 298.0 40.2 280 43-369 20-311 (312)
53 2j04_A TAU60, YPL007P, hypothe 100.0 6.8E-32 2.3E-36 319.8 21.3 257 11-298 15-295 (588)
54 1k8k_C P40, ARP2/3 complex 41 100.0 4.6E-30 1.6E-34 310.3 36.9 286 7-302 4-363 (372)
55 3k26_A Polycomb protein EED; W 100.0 2.1E-30 7.3E-35 312.6 32.7 280 5-299 12-365 (366)
56 4e54_B DNA damage-binding prot 100.0 1.7E-30 5.8E-35 319.9 29.8 286 9-303 117-433 (435)
57 1erj_A Transcriptional repress 100.0 1.9E-29 6.5E-34 305.6 38.3 287 44-370 62-389 (393)
58 4aow_A Guanine nucleotide-bind 100.0 2.8E-29 9.5E-34 299.2 39.0 294 43-372 35-339 (340)
59 3zwl_B Eukaryotic translation 100.0 2.4E-29 8.2E-34 303.7 38.5 276 8-303 29-349 (369)
60 2pm7_B Protein transport prote 100.0 1.6E-29 5.4E-34 293.1 34.9 247 43-299 6-284 (297)
61 3dwl_C Actin-related protein 2 100.0 1E-30 3.4E-35 316.5 25.8 284 6-298 6-377 (377)
62 3ei3_B DNA damage-binding prot 100.0 1.7E-29 5.9E-34 306.2 34.4 283 7-299 69-381 (383)
63 3dm0_A Maltose-binding peripla 100.0 2.6E-29 8.7E-34 329.6 37.3 302 44-369 380-692 (694)
64 4e54_B DNA damage-binding prot 100.0 7.6E-30 2.6E-34 314.1 30.2 291 45-373 118-433 (435)
65 2j04_B YDR362CP, TAU91; beta p 100.0 4.3E-30 1.5E-34 317.6 27.9 309 19-370 169-517 (524)
66 3gre_A Serine/threonine-protei 100.0 1.9E-29 6.4E-34 312.1 32.4 266 6-302 58-361 (437)
67 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-28 4.2E-33 289.7 37.5 274 6-304 13-300 (313)
68 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-28 1.3E-32 300.7 43.4 311 8-370 115-442 (445)
69 3v7d_B Cell division control p 100.0 4.1E-28 1.4E-32 302.7 41.8 282 45-374 120-425 (464)
70 3i2n_A WD repeat-containing pr 100.0 2.7E-29 9.3E-34 301.6 29.9 286 7-301 14-354 (357)
71 1sq9_A Antiviral protein SKI8; 100.0 6.1E-29 2.1E-33 303.4 32.9 289 5-301 10-396 (397)
72 4h5i_A Guanine nucleotide-exch 100.0 2.2E-29 7.5E-34 300.6 28.2 275 11-300 14-343 (365)
73 4aez_A CDC20, WD repeat-contai 100.0 9.3E-29 3.2E-33 301.1 34.2 270 13-304 95-384 (401)
74 3ei3_B DNA damage-binding prot 100.0 1.7E-28 5.9E-33 297.3 35.2 285 43-370 70-382 (383)
75 3v7d_B Cell division control p 100.0 7.6E-28 2.6E-32 300.3 41.8 301 9-366 119-459 (464)
76 4gga_A P55CDC, cell division c 100.0 5.1E-28 1.7E-32 296.4 39.2 269 13-301 107-396 (420)
77 2pm7_B Protein transport prote 100.0 3.5E-28 1.2E-32 281.8 35.6 242 6-253 4-285 (297)
78 1k32_A Tricorn protease; prote 100.0 4E-27 1.4E-31 322.7 51.4 535 9-654 12-635 (1045)
79 3zwl_B Eukaryotic translation 100.0 1.1E-27 3.9E-32 289.0 39.6 286 44-373 30-349 (369)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-27 5.8E-32 294.8 40.9 316 45-472 117-441 (445)
81 1sq9_A Antiviral protein SKI8; 100.0 7E-28 2.4E-32 294.0 36.6 309 43-371 13-396 (397)
82 4a11_B DNA excision repair pro 100.0 9.8E-28 3.4E-32 294.1 38.0 288 6-303 38-368 (408)
83 3bg1_A Protein SEC13 homolog; 100.0 1.1E-28 3.9E-33 288.6 28.0 251 38-299 5-292 (316)
84 3odt_A Protein DOA1; ubiquitin 100.0 2E-27 6.9E-32 279.2 37.6 287 82-475 8-298 (313)
85 1k8k_C P40, ARP2/3 complex 41 100.0 8.2E-28 2.8E-32 290.5 34.5 311 45-372 7-363 (372)
86 3i2n_A WD repeat-containing pr 100.0 1.2E-27 4.2E-32 287.2 33.7 305 44-371 16-354 (357)
87 3dwl_C Actin-related protein 2 100.0 9.4E-29 3.2E-33 299.2 23.8 243 45-299 10-280 (377)
88 3bg1_A Protein SEC13 homolog; 100.0 3.7E-28 1.3E-32 284.2 27.6 239 6-253 8-293 (316)
89 2j04_A TAU60, YPL007P, hypothe 100.0 4.1E-29 1.4E-33 296.1 18.8 325 90-607 13-349 (588)
90 4ggc_A P55CDC, cell division c 100.0 5.9E-27 2E-31 276.0 37.4 266 14-299 28-314 (318)
91 3dw8_B Serine/threonine-protei 100.0 1.4E-27 4.7E-32 296.7 32.8 284 10-298 27-444 (447)
92 3k26_A Polycomb protein EED; W 100.0 1.2E-27 4.1E-32 288.4 28.8 295 44-369 16-365 (366)
93 3dw8_B Serine/threonine-protei 100.0 4.2E-27 1.4E-31 292.4 33.7 311 44-368 26-444 (447)
94 1yfq_A Cell cycle arrest prote 100.0 3.5E-27 1.2E-31 281.1 31.2 275 5-297 5-321 (342)
95 4aez_A CDC20, WD repeat-contai 100.0 1.3E-26 4.5E-31 282.0 36.8 280 46-374 93-384 (401)
96 1k32_A Tricorn protease; prote 100.0 2.8E-26 9.6E-31 314.3 44.0 474 9-621 50-639 (1045)
97 4a11_B DNA excision repair pro 100.0 1E-26 3.5E-31 285.1 35.2 295 45-373 42-368 (408)
98 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-27 1.4E-31 281.6 30.9 286 5-303 5-340 (351)
99 4h5i_A Guanine nucleotide-exch 100.0 2.9E-27 1E-31 282.1 28.9 286 46-371 14-344 (365)
100 3jrp_A Fusion protein of prote 100.0 1.4E-26 4.9E-31 280.5 34.1 248 44-301 9-288 (379)
101 1yfq_A Cell cycle arrest prote 100.0 1.9E-26 6.5E-31 274.8 34.6 280 44-362 9-315 (342)
102 3gre_A Serine/threonine-protei 100.0 2.8E-27 9.7E-32 292.5 27.2 230 53-302 34-294 (437)
103 1p22_A F-BOX/WD-repeat protein 100.0 3E-26 1E-30 282.4 33.7 267 10-301 132-415 (435)
104 4gga_A P55CDC, cell division c 99.9 1E-25 3.6E-30 275.8 36.5 285 37-371 96-396 (420)
105 3mmy_A MRNA export factor; mRN 99.9 5.4E-26 1.9E-30 274.1 31.0 279 4-298 32-344 (368)
106 2aq5_A Coronin-1A; WD40 repeat 99.9 3.9E-26 1.3E-30 278.3 29.1 293 47-378 35-350 (402)
107 3mmy_A MRNA export factor; mRN 99.9 4.6E-26 1.6E-30 274.7 29.4 282 43-367 36-343 (368)
108 2aq5_A Coronin-1A; WD40 repeat 99.9 3.8E-26 1.3E-30 278.4 28.9 275 15-302 38-344 (402)
109 3jrp_A Fusion protein of prote 99.9 1.1E-25 3.6E-30 272.9 32.2 243 6-254 6-288 (379)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.4E-25 8.3E-30 275.4 34.7 277 12-299 5-390 (450)
111 4ggc_A P55CDC, cell division c 99.9 7.1E-25 2.4E-29 258.1 36.2 288 37-370 16-315 (318)
112 3jro_A Fusion protein of prote 99.9 1.3E-25 4.4E-30 295.3 31.6 248 43-300 6-285 (753)
113 1p22_A F-BOX/WD-repeat protein 99.9 1.1E-24 3.6E-29 268.5 35.8 282 44-373 131-417 (435)
114 3f3f_A Nucleoporin SEH1; struc 99.9 1.9E-24 6.4E-29 258.5 36.5 287 43-373 8-340 (351)
115 3jro_A Fusion protein of prote 99.9 8.1E-26 2.8E-30 297.2 25.5 248 5-255 3-287 (753)
116 3lrv_A PRE-mRNA-splicing facto 99.9 1.4E-25 4.8E-30 266.3 24.8 260 19-298 44-331 (343)
117 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-24 5.6E-29 257.6 33.4 277 8-300 16-336 (355)
118 2xyi_A Probable histone-bindin 99.9 3.5E-24 1.2E-28 262.9 32.5 250 45-301 127-411 (430)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.9 8.6E-24 2.9E-28 261.5 36.1 244 46-298 4-337 (450)
120 2xyi_A Probable histone-bindin 99.9 2.6E-24 9E-29 263.9 29.9 237 8-253 125-410 (430)
121 3vu4_A KMHSV2; beta-propeller 99.9 1.3E-23 4.6E-28 249.8 31.8 294 43-370 16-336 (355)
122 1l0q_A Surface layer protein; 99.9 6.4E-23 2.2E-27 249.3 38.2 258 24-304 3-279 (391)
123 1b89_A Protein (clathrin heavy 99.9 5.4E-25 1.8E-29 252.7 18.0 409 988-1510 6-448 (449)
124 3bws_A Protein LP49; two-domai 99.9 1.5E-23 5.2E-28 258.8 32.0 266 12-299 123-431 (433)
125 3bws_A Protein LP49; two-domai 99.9 5.1E-23 1.8E-27 254.1 35.5 307 12-370 61-432 (433)
126 4gq1_A NUP37; propeller, trans 99.9 4E-24 1.4E-28 258.3 23.3 227 12-252 90-388 (393)
127 4gq1_A NUP37; propeller, trans 99.9 1.6E-23 5.5E-28 253.1 26.2 282 11-298 15-387 (393)
128 3lrv_A PRE-mRNA-splicing facto 99.9 5.5E-23 1.9E-27 244.0 28.3 231 52-301 42-293 (343)
129 2xpi_A Anaphase-promoting comp 99.9 2.9E-22 1E-26 259.1 37.2 431 861-1412 91-581 (597)
130 2w18_A PALB2, fancn, partner a 99.9 8.5E-23 2.9E-27 226.9 24.0 216 6-251 106-355 (356)
131 2xpi_A Anaphase-promoting comp 99.9 2.6E-21 8.9E-26 250.2 39.5 414 957-1461 83-575 (597)
132 1l0q_A Surface layer protein; 99.9 7.8E-21 2.7E-25 230.8 37.6 228 12-256 32-278 (391)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.4E-22 2.5E-26 239.6 28.0 264 13-299 64-386 (415)
134 1nir_A Nitrite reductase; hemo 99.9 3.5E-21 1.2E-25 240.5 34.7 327 18-377 144-521 (543)
135 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-21 9.3E-26 256.6 34.1 321 11-374 36-463 (741)
136 2w18_A PALB2, fancn, partner a 99.9 1.2E-21 3.9E-26 217.9 25.2 278 5-298 30-355 (356)
137 3lvg_A Clathrin heavy chain 1; 99.9 1.3E-29 4.4E-34 279.4 -41.0 454 976-1550 16-502 (624)
138 1w3b_A UDP-N-acetylglucosamine 99.9 6.6E-20 2.3E-24 222.2 33.6 355 861-1411 6-369 (388)
139 1nir_A Nitrite reductase; hemo 99.9 1.3E-19 4.4E-24 226.3 34.5 279 14-304 181-518 (543)
140 1w3b_A UDP-N-acetylglucosamine 99.9 3.6E-19 1.2E-23 215.7 35.6 374 735-1319 5-387 (388)
141 2ecf_A Dipeptidyl peptidase IV 99.9 9.6E-20 3.3E-24 241.7 32.5 278 46-369 36-412 (741)
142 2hqs_A Protein TOLB; TOLB, PAL 99.8 3.6E-19 1.2E-23 215.9 32.9 236 23-282 143-410 (415)
143 1xfd_A DIP, dipeptidyl aminope 99.8 4.1E-20 1.4E-24 244.6 26.7 273 12-299 17-392 (723)
144 2z3z_A Dipeptidyl aminopeptida 99.8 2.4E-19 8.4E-24 236.2 30.0 312 11-372 25-437 (706)
145 2z3z_A Dipeptidyl aminopeptida 99.8 1.6E-18 5.6E-23 228.3 35.2 269 12-302 82-437 (706)
146 3u4y_A Uncharacterized protein 99.8 1.6E-18 5.5E-23 204.8 30.6 274 17-301 3-305 (331)
147 1ri6_A Putative isomerase YBHE 99.8 2E-18 6.8E-23 205.3 30.0 271 24-299 6-307 (343)
148 2ojh_A Uncharacterized protein 99.8 9.8E-19 3.3E-23 203.0 25.9 245 29-291 18-293 (297)
149 1xfd_A DIP, dipeptidyl aminope 99.8 7.3E-19 2.5E-23 232.6 25.5 238 45-297 15-341 (723)
150 3vgz_A Uncharacterized protein 99.8 1.3E-17 4.5E-22 199.1 30.8 258 12-291 41-335 (353)
151 1ri6_A Putative isomerase YBHE 99.8 4.4E-17 1.5E-21 193.6 33.6 281 59-375 5-315 (343)
152 1pby_B Quinohemoprotein amine 99.8 1.9E-17 6.6E-22 196.2 27.3 256 24-304 2-314 (337)
153 3u4y_A Uncharacterized protein 99.8 5.7E-17 1.9E-21 191.4 30.5 288 52-375 3-309 (331)
154 1z68_A Fibroblast activation p 99.8 1.1E-17 3.9E-22 220.6 27.1 319 15-373 19-446 (719)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 3.9E-17 1.3E-21 198.3 29.4 239 9-254 34-334 (434)
156 3vgz_A Uncharacterized protein 99.8 1E-16 3.4E-21 191.4 30.8 265 45-357 39-330 (353)
157 2ojh_A Uncharacterized protein 99.8 1.7E-17 5.8E-22 192.5 23.3 224 10-245 40-293 (297)
158 3o4h_A Acylamino-acid-releasin 99.8 1.3E-17 4.5E-22 213.6 24.1 257 11-298 21-313 (582)
159 2gw1_A Mitochondrial precursor 99.8 2.8E-16 9.4E-21 198.8 34.9 365 958-1462 39-475 (514)
160 3fp2_A TPR repeat-containing p 99.8 7.9E-16 2.7E-20 195.7 38.1 432 728-1412 24-493 (537)
161 3fp2_A TPR repeat-containing p 99.7 2.2E-16 7.6E-21 200.9 31.8 397 958-1463 25-489 (537)
162 2oit_A Nucleoporin 214KDA; NH2 99.7 1.2E-16 4.2E-21 193.9 27.8 261 33-299 23-332 (434)
163 3hfq_A Uncharacterized protein 99.7 2.8E-16 9.5E-21 186.7 30.0 250 46-303 39-322 (347)
164 3hfq_A Uncharacterized protein 99.7 6.7E-16 2.3E-20 183.5 31.9 280 66-376 14-325 (347)
165 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-16 6E-21 208.6 29.3 260 42-372 12-296 (740)
166 2gw1_A Mitochondrial precursor 99.7 3.7E-16 1.3E-20 197.6 29.6 390 861-1412 13-480 (514)
167 1z68_A Fibroblast activation p 99.7 1.6E-16 5.3E-21 209.7 27.1 274 14-302 62-445 (719)
168 3scy_A Hypothetical bacterial 99.7 4.1E-15 1.4E-19 177.7 36.5 274 19-299 9-336 (361)
169 4a5s_A Dipeptidyl peptidase 4 99.7 5.6E-16 1.9E-20 203.7 31.4 317 13-373 18-452 (740)
170 1jmx_B Amine dehydrogenase; ox 99.7 2.1E-16 7.3E-21 188.2 23.9 267 16-304 4-329 (349)
171 3o4h_A Acylamino-acid-releasin 99.7 4.7E-16 1.6E-20 199.2 27.1 263 46-370 21-315 (582)
172 2y4t_A DNAJ homolog subfamily 99.7 2.8E-15 9.5E-20 185.8 31.4 298 955-1412 23-360 (450)
173 1b89_A Protein (clathrin heavy 99.7 4.9E-16 1.7E-20 178.7 22.1 382 863-1330 12-413 (449)
174 1pby_B Quinohemoprotein amine 99.7 1E-15 3.6E-20 181.2 25.0 262 59-374 2-314 (337)
175 2y4t_A DNAJ homolog subfamily 99.7 7.9E-15 2.7E-19 181.6 33.3 291 897-1273 23-355 (450)
176 3scy_A Hypothetical bacterial 99.7 2.4E-14 8.1E-19 171.1 36.0 284 55-376 10-345 (361)
177 3pe7_A Oligogalacturonate lyas 99.7 9.6E-16 3.3E-20 185.6 23.5 264 16-298 40-380 (388)
178 1jmx_B Amine dehydrogenase; ox 99.7 4.3E-15 1.5E-19 176.9 27.4 270 50-374 3-329 (349)
179 3ieg_A DNAJ homolog subfamily 99.7 1.6E-14 5.6E-19 172.6 32.3 306 959-1412 4-337 (359)
180 2xm6_A Protein corresponding t 99.6 1E-13 3.5E-18 172.9 34.2 321 1017-1408 39-430 (490)
181 3sf4_A G-protein-signaling mod 99.6 1.2E-13 4E-18 168.4 33.4 334 960-1453 11-364 (406)
182 2xm6_A Protein corresponding t 99.6 9.7E-14 3.3E-18 173.1 32.8 307 939-1273 56-429 (490)
183 3ieg_A DNAJ homolog subfamily 99.6 1.5E-13 5.1E-18 164.1 33.0 306 861-1273 10-332 (359)
184 3pe7_A Oligogalacturonate lyas 99.6 8.9E-15 3.1E-19 177.0 22.5 234 52-302 41-331 (388)
185 4g1t_A Interferon-induced prot 99.6 3.1E-14 1.1E-18 177.5 27.8 383 861-1411 58-460 (472)
186 1jof_A Carboxy-CIS,CIS-muconat 99.6 6.9E-14 2.4E-18 166.8 28.3 280 60-373 4-344 (365)
187 1fch_A Peroxisomal targeting s 99.6 6.2E-15 2.1E-19 177.0 19.2 288 935-1330 34-355 (368)
188 3c5m_A Oligogalacturonate lyas 99.6 9.5E-15 3.2E-19 177.4 20.3 261 14-298 38-380 (396)
189 4g1t_A Interferon-induced prot 99.6 1.8E-13 6.3E-18 170.5 29.5 345 1016-1462 50-456 (472)
190 1jof_A Carboxy-CIS,CIS-muconat 99.6 7.4E-14 2.5E-18 166.5 24.3 235 13-254 41-342 (365)
191 3hym_B Cell division cycle pro 99.6 2.4E-13 8.3E-18 160.1 27.4 275 896-1259 18-316 (330)
192 3azo_A Aminopeptidase; POP fam 99.6 1.8E-13 6.2E-18 178.5 28.3 285 9-301 21-370 (662)
193 3sf4_A G-protein-signaling mod 99.6 3.1E-12 1.1E-16 155.7 37.4 351 730-1220 10-379 (406)
194 4a1s_A PINS, partner of inscut 99.6 1.1E-12 3.8E-17 159.9 32.5 300 961-1408 51-370 (411)
195 3hym_B Cell division cycle pro 99.6 3.6E-13 1.2E-17 158.6 27.1 277 960-1412 24-301 (330)
196 4a1s_A PINS, partner of inscut 99.6 1.7E-12 5.8E-17 158.3 33.6 312 861-1291 55-381 (411)
197 1q7f_A NHL, brain tumor CG1071 99.6 1.8E-12 6.1E-17 148.8 31.7 227 12-253 30-280 (286)
198 2xdw_A Prolyl endopeptidase; a 99.5 8.1E-13 2.8E-17 172.9 30.6 234 12-254 125-415 (710)
199 2gop_A Trilobed protease; beta 99.5 1E-12 3.4E-17 156.0 28.7 251 12-299 15-330 (347)
200 3c5m_A Oligogalacturonate lyas 99.5 7.7E-14 2.6E-18 169.3 19.4 235 47-302 36-331 (396)
201 3fvz_A Peptidyl-glycine alpha- 99.5 2.3E-12 7.9E-17 150.8 30.7 235 12-253 24-322 (329)
202 4eqf_A PEX5-related protein; a 99.5 9.4E-14 3.2E-18 166.3 19.0 265 959-1330 66-352 (365)
203 3ro2_A PINS homolog, G-protein 99.5 4.7E-12 1.6E-16 149.4 33.4 294 860-1273 11-329 (338)
204 3ulq_A Response regulator aspa 99.5 2.9E-12 1E-16 154.1 31.8 257 1020-1408 106-366 (383)
205 2oiz_A Aromatic amine dehydrog 99.5 1.9E-12 6.5E-17 153.0 27.9 266 21-301 13-335 (361)
206 1fch_A Peroxisomal targeting s 99.5 2.4E-13 8.2E-18 163.0 20.2 294 863-1273 34-356 (368)
207 3azo_A Aminopeptidase; POP fam 99.5 5.2E-12 1.8E-16 164.7 34.2 242 45-298 22-321 (662)
208 2bkl_A Prolyl endopeptidase; m 99.5 7.8E-13 2.7E-17 172.4 25.7 266 19-302 75-399 (695)
209 3q15_A PSP28, response regulat 99.5 2.3E-11 7.9E-16 145.8 36.6 258 1019-1408 103-363 (378)
210 3e5z_A Putative gluconolactona 99.5 2.3E-12 7.7E-17 148.7 26.5 229 10-252 26-285 (296)
211 3fvz_A Peptidyl-glycine alpha- 99.5 2.5E-12 8.4E-17 150.6 26.9 239 46-299 23-321 (329)
212 2bkl_A Prolyl endopeptidase; m 99.5 7.5E-13 2.6E-17 172.6 24.5 236 10-254 119-398 (695)
213 2xdw_A Prolyl endopeptidase; a 99.5 5.3E-12 1.8E-16 165.2 32.6 265 20-302 80-416 (710)
214 3ro2_A PINS homolog, G-protein 99.5 2.1E-11 7.1E-16 143.8 34.9 306 730-1160 6-329 (338)
215 3ulq_A Response regulator aspa 99.5 2E-11 6.9E-16 146.8 33.4 249 963-1330 108-364 (383)
216 3cv0_A Peroxisome targeting si 99.5 7.9E-13 2.7E-17 155.4 20.6 263 961-1330 24-311 (327)
217 1q7f_A NHL, brain tumor CG1071 99.5 1.1E-11 3.7E-16 142.2 29.2 238 45-299 28-279 (286)
218 1qks_A Cytochrome CD1 nitrite 99.5 8.3E-11 2.8E-15 145.7 38.6 329 20-376 164-544 (567)
219 4eqf_A PEX5-related protein; a 99.5 2.8E-12 9.6E-17 153.4 23.5 237 955-1273 96-353 (365)
220 2oiz_A Aromatic amine dehydrog 99.5 5.8E-12 2E-16 148.9 25.9 245 16-282 54-360 (361)
221 2dg1_A DRP35, lactonase; beta 99.4 8.1E-12 2.8E-16 147.1 26.6 237 46-299 5-262 (333)
222 1qks_A Cytochrome CD1 nitrite 99.4 1E-10 3.4E-15 144.9 36.5 280 13-304 198-542 (567)
223 2gop_A Trilobed protease; beta 99.4 2.4E-11 8.1E-16 144.1 29.6 256 46-369 14-330 (347)
224 2pl2_A Hypothetical conserved 99.4 1.9E-12 6.3E-17 140.9 17.7 196 959-1274 6-212 (217)
225 3uq3_A Heat shock protein STI1 99.4 2.7E-12 9.1E-17 144.8 18.9 225 959-1273 6-233 (258)
226 2dg1_A DRP35, lactonase; beta 99.4 4.6E-11 1.6E-15 140.6 30.2 227 11-244 44-300 (333)
227 3q15_A PSP28, response regulat 99.4 4.6E-11 1.6E-15 143.2 30.5 236 861-1160 108-362 (378)
228 3mkr_A Coatomer subunit epsilo 99.4 8.7E-12 3E-16 142.1 22.7 225 996-1273 11-261 (291)
229 1yr2_A Prolyl oligopeptidase; 99.4 1E-11 3.5E-16 163.0 26.3 234 12-254 163-442 (741)
230 3cv0_A Peroxisome targeting si 99.4 8.7E-12 3E-16 146.4 22.6 230 955-1273 52-312 (327)
231 2z2n_A Virginiamycin B lyase; 99.4 3E-10 1E-14 131.2 35.0 269 10-301 13-296 (299)
232 3mkr_A Coatomer subunit epsilo 99.4 1.1E-11 3.9E-16 141.2 22.0 205 963-1215 39-261 (291)
233 2ooe_A Cleavage stimulation fa 99.4 5.5E-10 1.9E-14 140.6 39.2 127 1243-1408 317-452 (530)
234 2pl2_A Hypothetical conserved 99.4 6.1E-12 2.1E-16 136.8 18.3 198 1016-1332 4-212 (217)
235 3mkq_B Coatomer subunit alpha; 99.4 4.9E-12 1.7E-16 124.5 15.4 125 696-838 6-130 (177)
236 2z2n_A Virginiamycin B lyase; 99.4 1.6E-09 5.4E-14 125.1 38.3 287 33-371 3-296 (299)
237 3uq3_A Heat shock protein STI1 99.4 3.4E-11 1.2E-15 135.6 22.8 229 1074-1408 3-234 (258)
238 1yr2_A Prolyl oligopeptidase; 99.4 6.8E-11 2.3E-15 155.2 29.0 265 20-302 115-443 (741)
239 3u4t_A TPR repeat-containing p 99.4 4.4E-11 1.5E-15 136.0 23.4 223 962-1273 7-247 (272)
240 3u4t_A TPR repeat-containing p 99.4 2.6E-11 9E-16 137.9 21.5 246 1018-1412 4-252 (272)
241 1rwi_B Serine/threonine-protei 99.3 1.1E-10 3.9E-15 132.4 26.2 236 48-301 25-265 (270)
242 1rwi_B Serine/threonine-protei 99.3 7.8E-11 2.7E-15 133.7 24.6 227 13-253 25-264 (270)
243 2ooe_A Cleavage stimulation fa 99.3 1.1E-09 3.8E-14 137.8 37.4 183 1061-1331 304-489 (530)
244 2h6f_A Protein farnesyltransfe 99.3 6.4E-11 2.2E-15 139.4 24.2 239 1012-1412 93-350 (382)
245 3dsm_A Uncharacterized protein 99.3 6.1E-10 2.1E-14 129.7 29.7 251 31-304 15-305 (328)
246 3dsm_A Uncharacterized protein 99.3 4.2E-10 1.4E-14 131.2 28.2 258 66-373 15-305 (328)
247 2qc5_A Streptogramin B lactona 99.3 3.5E-09 1.2E-13 122.2 33.5 265 11-298 19-298 (300)
248 3iuj_A Prolyl endopeptidase; h 99.3 2.7E-10 9.2E-15 147.8 26.5 234 10-252 127-404 (693)
249 3e5z_A Putative gluconolactona 99.3 4E-10 1.4E-14 129.7 24.6 231 46-301 27-287 (296)
250 3no2_A Uncharacterized protein 99.3 5.8E-10 2E-14 125.5 25.2 233 21-267 3-266 (276)
251 2h6f_A Protein farnesyltransfe 99.2 3.8E-10 1.3E-14 132.8 23.9 206 1072-1407 93-302 (382)
252 3e4b_A ALGK; tetratricopeptide 99.2 5.2E-11 1.8E-15 145.5 17.0 137 1230-1462 232-384 (452)
253 3nf1_A KLC 1, kinesin light ch 99.2 2.1E-10 7.2E-15 133.4 21.1 248 955-1273 24-304 (311)
254 1qqe_A Vesicular transport pro 99.2 1.1E-09 3.9E-14 125.2 26.5 179 920-1161 44-226 (292)
255 4a2l_A BT_4663, two-component 99.2 1.2E-06 4E-11 116.0 59.4 408 10-471 86-524 (795)
256 3no2_A Uncharacterized protein 99.2 6.2E-10 2.1E-14 125.3 23.5 214 57-288 4-231 (276)
257 1qqe_A Vesicular transport pro 99.2 1.1E-09 3.7E-14 125.4 25.8 215 965-1275 44-268 (292)
258 3sjl_D Methylamine dehydrogena 99.2 1E-09 3.4E-14 126.4 25.0 269 17-304 38-367 (386)
259 3e4b_A ALGK; tetratricopeptide 99.2 9.2E-11 3.2E-15 143.3 17.0 259 999-1331 89-384 (452)
260 2mad_H Methylamine dehydrogena 99.2 7.7E-09 2.6E-13 121.8 32.8 268 17-304 26-354 (373)
261 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.7E-09 5.7E-14 125.9 26.9 232 12-253 18-299 (314)
262 2qc5_A Streptogramin B lactona 99.2 1.5E-08 5.3E-13 116.7 34.8 274 45-368 18-298 (300)
263 1hz4_A MALT regulatory protein 99.2 3.9E-09 1.3E-13 126.3 30.5 239 960-1273 55-319 (373)
264 2mad_H Methylamine dehydrogena 99.2 1.9E-08 6.5E-13 118.5 35.4 281 53-376 27-356 (373)
265 3dr2_A Exported gluconolactona 99.2 1.1E-09 3.9E-14 126.2 23.8 222 12-248 45-301 (305)
266 1ouv_A Conserved hypothetical 99.2 6.5E-10 2.2E-14 126.2 20.8 204 1017-1273 6-248 (273)
267 2ifu_A Gamma-SNAP; membrane fu 99.2 2.1E-09 7.3E-14 123.9 25.2 146 958-1160 76-221 (307)
268 1ouv_A Conserved hypothetical 99.2 8.8E-10 3E-14 125.2 21.5 207 1050-1331 13-248 (273)
269 3sjl_D Methylamine dehydrogena 99.2 6.8E-09 2.3E-13 119.5 28.7 280 51-376 37-369 (386)
270 3v9f_A Two-component system se 99.2 1.2E-05 3.9E-10 106.2 64.0 403 10-470 64-521 (781)
271 3nf1_A KLC 1, kinesin light ch 99.2 3.6E-10 1.2E-14 131.4 18.5 226 897-1160 24-304 (311)
272 3g4e_A Regucalcin; six bladed 99.2 5E-09 1.7E-13 120.2 26.9 222 10-243 11-261 (297)
273 3edt_B KLC 2, kinesin light ch 99.2 4.1E-10 1.4E-14 128.8 17.7 253 926-1273 14-278 (283)
274 4a2l_A BT_4663, two-component 99.2 2.1E-06 7.2E-11 113.5 55.9 402 14-471 133-569 (795)
275 3vtx_A MAMA; tetratricopeptide 99.2 8.1E-10 2.8E-14 116.6 18.5 164 1016-1273 4-167 (184)
276 2ghs_A AGR_C_1268P; regucalcin 99.1 9.2E-09 3.1E-13 119.6 28.8 222 12-244 49-292 (326)
277 3vtx_A MAMA; tetratricopeptide 99.1 1E-09 3.4E-14 115.9 18.8 168 1134-1412 5-172 (184)
278 2q7f_A YRRB protein; TPR, prot 99.1 5.9E-10 2E-14 124.1 17.9 196 959-1273 24-219 (243)
279 1xnf_A Lipoprotein NLPI; TPR, 99.1 5.7E-10 2E-14 126.9 18.1 200 956-1181 41-267 (275)
280 4abn_A Tetratricopeptide repea 99.1 3.9E-10 1.3E-14 138.7 17.8 201 953-1273 97-318 (474)
281 2ho1_A Type 4 fimbrial biogene 99.1 8.5E-10 2.9E-14 123.6 19.2 199 958-1273 37-235 (252)
282 1hz4_A MALT regulatory protein 99.1 1.4E-08 4.9E-13 121.3 31.0 237 861-1160 60-319 (373)
283 4gyw_A UDP-N-acetylglucosamine 99.1 2.6E-10 8.8E-15 145.3 16.1 167 955-1216 6-172 (723)
284 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 5.4E-09 1.8E-13 121.6 26.0 237 47-300 18-299 (314)
285 4gyw_A UDP-N-acetylglucosamine 99.1 3.9E-10 1.3E-14 143.6 17.3 167 1012-1273 5-171 (723)
286 4abn_A Tetratricopeptide repea 99.1 3.1E-10 1.1E-14 139.6 15.5 197 1016-1331 101-318 (474)
287 1xnf_A Lipoprotein NLPI; TPR, 99.1 2.5E-09 8.6E-14 121.6 21.9 189 1016-1273 42-241 (275)
288 3c75_H MADH, methylamine dehyd 99.1 1.3E-08 4.3E-13 119.9 26.9 274 55-375 81-407 (426)
289 3hrp_A Uncharacterized protein 99.1 1.5E-08 5.2E-13 121.3 26.6 230 12-251 131-408 (409)
290 2vq2_A PILW, putative fimbrial 99.1 4.5E-09 1.5E-13 115.1 20.3 202 955-1273 5-208 (225)
291 2ho1_A Type 4 fimbrial biogene 99.1 1E-08 3.4E-13 114.7 23.3 206 1073-1411 34-239 (252)
292 3iuj_A Prolyl endopeptidase; h 99.1 4.6E-09 1.6E-13 136.2 23.2 236 45-302 127-407 (693)
293 3edt_B KLC 2, kinesin light ch 99.0 9.4E-09 3.2E-13 117.2 22.6 233 864-1160 11-278 (283)
294 1xip_A Nucleoporin NUP159; bet 99.0 2.4E-09 8.1E-14 124.1 17.3 174 93-287 38-231 (388)
295 2ifu_A Gamma-SNAP; membrane fu 99.0 3.1E-08 1.1E-12 114.1 26.3 139 920-1103 83-222 (307)
296 2q7f_A YRRB protein; TPR, prot 99.0 1.7E-09 5.8E-14 120.3 15.0 198 1016-1331 22-219 (243)
297 3hrp_A Uncharacterized protein 99.0 3.7E-08 1.3E-12 117.9 26.9 242 47-298 131-408 (409)
298 3v9f_A Two-component system se 99.0 2.4E-05 8.2E-10 103.1 56.4 405 12-471 115-566 (781)
299 1xip_A Nucleoporin NUP159; bet 99.0 2.6E-09 9.1E-14 123.7 15.9 178 47-241 38-231 (388)
300 2vq2_A PILW, putative fimbrial 99.0 1.2E-08 4.2E-13 111.6 20.1 200 1016-1330 7-207 (225)
301 3c75_H MADH, methylamine dehyd 99.0 3.4E-08 1.2E-12 116.2 24.7 265 20-304 81-406 (426)
302 3g4e_A Regucalcin; six bladed 98.9 1E-07 3.4E-12 109.3 26.1 223 48-289 14-261 (297)
303 2ond_A Cleavage stimulation fa 98.9 3.3E-08 1.1E-12 114.1 22.1 219 1012-1331 46-267 (308)
304 2ghs_A AGR_C_1268P; regucalcin 98.9 1.9E-07 6.5E-12 108.4 26.8 221 49-290 51-292 (326)
305 3q7m_A Lipoprotein YFGL, BAMB; 98.9 5.6E-07 1.9E-11 107.3 31.5 257 22-306 52-343 (376)
306 2qe8_A Uncharacterized protein 98.9 1.2E-07 3.9E-12 111.3 23.7 229 12-245 17-312 (343)
307 3qky_A Outer membrane assembly 98.9 5E-08 1.7E-12 109.6 18.9 187 1016-1273 14-221 (261)
308 4i17_A Hypothetical protein; T 98.8 5.3E-08 1.8E-12 106.8 18.3 97 1016-1160 6-102 (228)
309 3dr2_A Exported gluconolactona 98.8 1.2E-07 4.1E-12 109.1 22.1 223 47-292 45-299 (305)
310 3qky_A Outer membrane assembly 98.8 2.7E-08 9.1E-13 111.8 16.0 153 955-1160 12-174 (261)
311 2ond_A Cleavage stimulation fa 98.8 1E-07 3.4E-12 110.0 20.8 215 871-1160 33-267 (308)
312 4i17_A Hypothetical protein; T 98.8 1.4E-07 4.6E-12 103.5 20.0 103 959-1104 43-145 (228)
313 3gw4_A Uncharacterized protein 98.8 4.2E-07 1.4E-11 97.3 23.1 165 939-1160 5-173 (203)
314 2qe8_A Uncharacterized protein 98.8 2.6E-07 8.7E-12 108.3 23.0 228 47-301 17-279 (343)
315 3as5_A MAMA; tetratricopeptide 98.8 1.4E-07 4.7E-12 99.3 18.6 164 1016-1273 7-170 (186)
316 3as5_A MAMA; tetratricopeptide 98.8 1.6E-07 5.3E-12 98.9 18.0 129 958-1160 8-136 (186)
317 4ga2_A E3 SUMO-protein ligase 98.8 5.6E-08 1.9E-12 97.8 13.2 121 1073-1262 28-149 (150)
318 3lvg_A Clathrin heavy chain 1; 98.7 6.3E-12 2.2E-16 140.0 -17.4 434 861-1340 61-534 (624)
319 1yiq_A Quinohemoprotein alcoho 98.7 4E-07 1.4E-11 116.6 23.7 269 23-307 70-512 (689)
320 1mda_H Methylamine dehydrogena 98.7 1.8E-07 6.2E-12 108.3 17.6 246 34-304 47-350 (368)
321 4ga2_A E3 SUMO-protein ligase 98.7 3.4E-08 1.2E-12 99.5 9.9 136 1116-1320 11-149 (150)
322 3q7m_A Lipoprotein YFGL, BAMB; 98.7 4.9E-06 1.7E-10 99.1 30.4 269 57-374 52-341 (376)
323 2hz6_A Endoplasmic reticulum t 98.7 9E-10 3.1E-14 130.2 -3.4 250 22-299 8-278 (369)
324 3u3w_A Transcriptional activat 98.7 9.8E-07 3.3E-11 100.8 22.1 142 962-1160 119-263 (293)
325 1mda_H Methylamine dehydrogena 98.7 1.3E-06 4.6E-11 101.0 22.5 257 69-376 47-352 (368)
326 2pzi_A Probable serine/threoni 98.7 1E-07 3.5E-12 122.7 14.6 183 969-1263 402-584 (681)
327 2pzi_A Probable serine/threoni 98.7 2.5E-07 8.7E-12 119.0 18.1 223 1074-1427 392-625 (681)
328 3hxj_A Pyrrolo-quinoline quino 98.7 2.1E-07 7.2E-12 108.8 16.0 292 14-368 22-322 (330)
329 3gw4_A Uncharacterized protein 98.6 4.8E-06 1.7E-10 88.9 25.4 107 1016-1160 25-133 (203)
330 2fp8_A Strictosidine synthase; 98.6 2E-06 6.8E-11 99.8 23.8 233 13-253 20-313 (322)
331 3urz_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 96.6 17.6 181 1134-1412 4-188 (208)
332 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.8E-11 99.5 21.2 143 961-1160 118-263 (293)
333 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.9E-11 99.4 20.9 190 1018-1289 76-273 (293)
334 3ro3_A PINS homolog, G-protein 98.6 1.4E-06 4.8E-11 89.0 18.8 147 958-1160 9-155 (164)
335 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.6E-07 2.3E-11 97.5 17.0 63 1017-1101 4-66 (225)
336 1kb0_A Quinohemoprotein alcoho 98.6 6.8E-07 2.3E-11 114.2 19.7 268 23-306 77-513 (677)
337 2yhc_A BAMD, UPF0169 lipoprote 98.6 5.3E-07 1.8E-11 98.3 16.1 61 1134-1215 4-67 (225)
338 3urz_A Uncharacterized protein 98.6 5.9E-07 2E-11 96.4 16.2 177 1017-1273 4-183 (208)
339 1fwx_A Nitrous oxide reductase 98.6 2E-06 6.9E-11 102.9 20.7 217 51-300 89-361 (595)
340 2ece_A 462AA long hypothetical 98.5 1.2E-05 4E-10 92.8 25.6 231 53-288 88-399 (462)
341 2r5s_A Uncharacterized protein 98.5 3.3E-07 1.1E-11 95.4 11.8 151 962-1160 10-170 (176)
342 3hxj_A Pyrrolo-quinoline quino 98.5 9.4E-07 3.2E-11 103.2 16.6 254 12-299 60-323 (330)
343 2ece_A 462AA long hypothetical 98.5 9.7E-06 3.3E-10 93.5 24.1 190 99-299 88-351 (462)
344 3u3w_A Transcriptional activat 98.5 4.4E-06 1.5E-10 95.3 21.3 179 861-1102 82-263 (293)
345 3qou_A Protein YBBN; thioredox 98.5 6.2E-07 2.1E-11 101.8 13.9 157 956-1160 115-281 (287)
346 3gyz_A Chaperone protein IPGC; 98.5 2E-07 6.9E-12 93.0 8.5 113 935-1102 18-130 (151)
347 1kb0_A Quinohemoprotein alcoho 98.5 1.7E-06 5.8E-11 110.6 18.6 198 103-307 77-353 (677)
348 4gco_A Protein STI-1; structur 98.5 8E-07 2.7E-11 86.0 11.9 98 1131-1273 10-107 (126)
349 3rjv_A Putative SEL1 repeat pr 98.5 7.9E-07 2.7E-11 95.6 12.4 161 1004-1215 6-194 (212)
350 3gyz_A Chaperone protein IPGC; 98.4 5.9E-07 2E-11 89.6 10.3 99 1012-1160 32-130 (151)
351 2r5s_A Uncharacterized protein 98.4 1.5E-06 5.1E-11 90.3 13.8 151 1019-1215 8-170 (176)
352 3mkq_B Coatomer subunit alpha; 98.4 6.6E-06 2.3E-10 81.2 17.3 130 991-1128 12-141 (177)
353 3qou_A Protein YBBN; thioredox 98.4 4E-06 1.4E-10 95.0 18.2 166 1118-1331 102-281 (287)
354 2hz6_A Endoplasmic reticulum t 98.4 6.6E-08 2.2E-12 114.2 3.0 181 103-306 8-198 (369)
355 4gco_A Protein STI-1; structur 98.4 5.4E-07 1.8E-11 87.2 9.0 98 955-1102 10-107 (126)
356 1fwx_A Nitrous oxide reductase 98.4 3.8E-06 1.3E-10 100.6 17.8 218 21-243 99-407 (595)
357 2p4o_A Hypothetical protein; p 98.4 0.00012 3.9E-09 83.9 30.0 223 12-245 32-279 (306)
358 4gcn_A Protein STI-1; structur 98.4 1.6E-06 5.5E-11 84.1 11.6 100 959-1102 9-109 (127)
359 3ro3_A PINS homolog, G-protein 98.4 1.2E-05 4E-10 82.0 18.6 137 922-1102 18-155 (164)
360 1npe_A Nidogen, entactin; glyc 98.4 0.00016 5.6E-09 80.8 28.9 235 24-282 2-263 (267)
361 4gcn_A Protein STI-1; structur 98.3 2.4E-06 8.3E-11 82.8 11.6 101 1016-1160 7-109 (127)
362 1npe_A Nidogen, entactin; glyc 98.3 0.00019 6.6E-09 80.2 28.9 210 13-236 37-263 (267)
363 3n71_A Histone lysine methyltr 98.3 9.3E-06 3.2E-10 97.9 18.7 141 964-1161 315-462 (490)
364 2c2l_A CHIP, carboxy terminus 98.3 2.1E-06 7.2E-11 96.9 12.5 95 958-1102 4-98 (281)
365 2vsy_A XCC0866; transferase, g 98.3 3.2E-06 1.1E-10 107.1 15.1 99 1012-1160 19-117 (568)
366 3n71_A Histone lysine methyltr 98.3 7.5E-06 2.6E-10 98.7 17.3 136 923-1102 319-461 (490)
367 3mv2_B Coatomer subunit epsilo 98.3 1.9E-05 6.4E-10 87.4 18.6 214 939-1160 26-279 (310)
368 3mv2_B Coatomer subunit epsilo 98.3 7.8E-06 2.7E-10 90.3 15.6 189 1019-1215 47-279 (310)
369 2xe4_A Oligopeptidase B; hydro 98.3 6.8E-05 2.3E-09 97.4 27.3 186 13-204 175-394 (751)
370 3rjv_A Putative SEL1 repeat pr 98.3 7.4E-06 2.5E-10 87.9 14.8 152 1132-1331 16-194 (212)
371 2vsy_A XCC0866; transferase, g 98.3 4.7E-06 1.6E-10 105.5 15.5 132 955-1160 20-154 (568)
372 2iwa_A Glutamine cyclotransfer 98.3 0.00012 4.2E-09 79.4 24.3 193 48-253 22-237 (266)
373 4g26_A Pentatricopeptide repea 98.3 3.7E-06 1.3E-10 102.6 13.6 26 1135-1160 176-201 (501)
374 4e6h_A MRNA 3'-END-processing 98.3 0.0029 1E-07 79.4 39.8 203 1050-1331 350-567 (679)
375 2xe4_A Oligopeptidase B; hydro 98.2 0.00014 4.6E-09 94.6 28.7 190 48-251 175-398 (751)
376 4g26_A Pentatricopeptide repea 98.2 8.8E-06 3E-10 99.3 16.4 136 933-1069 33-201 (501)
377 4b4t_Q 26S proteasome regulato 98.2 1.9E-05 6.4E-10 96.3 19.1 107 1016-1160 134-242 (434)
378 1yiq_A Quinohemoprotein alcoho 98.2 2.8E-05 9.7E-10 99.4 21.3 252 22-289 120-538 (689)
379 4b4t_Q 26S proteasome regulato 98.2 2.5E-05 8.4E-10 95.2 19.4 106 1072-1215 131-242 (434)
380 2fo7_A Synthetic consensus TPR 98.2 1.9E-05 6.6E-10 77.2 14.9 128 1135-1331 2-129 (136)
381 2c2l_A CHIP, carboxy terminus 98.2 9.1E-06 3.1E-10 91.7 13.6 96 1016-1160 3-98 (281)
382 2xbg_A YCF48-like protein; pho 98.2 0.0025 8.7E-08 73.2 34.0 269 11-297 35-319 (327)
383 2vgx_A Chaperone SYCD; alterna 98.2 4.4E-06 1.5E-10 83.5 9.1 98 955-1102 18-115 (148)
384 1a17_A Serine/threonine protei 98.1 1.8E-05 6.1E-10 81.1 13.7 127 960-1160 15-143 (166)
385 2hr2_A Hypothetical protein; a 98.1 2.5E-05 8.6E-10 76.5 13.4 114 1017-1160 11-128 (159)
386 4f3v_A ESX-1 secretion system 98.1 3.8E-05 1.3E-09 83.7 16.0 88 1012-1101 36-160 (282)
387 2fo7_A Synthetic consensus TPR 98.1 1.8E-05 6.2E-10 77.4 12.6 117 961-1102 4-129 (136)
388 2iwa_A Glutamine cyclotransfer 98.1 0.00038 1.3E-08 75.6 23.3 198 94-299 22-236 (266)
389 1kv9_A Type II quinohemoprotei 98.1 7.7E-05 2.6E-09 95.1 20.8 268 23-306 66-494 (668)
390 2fp8_A Strictosidine synthase; 98.1 0.00042 1.5E-08 79.9 25.4 235 48-299 20-312 (322)
391 1p5q_A FKBP52, FK506-binding p 98.1 1.4E-05 4.7E-10 92.8 12.6 142 958-1160 147-291 (336)
392 3nol_A Glutamine cyclotransfer 98.1 0.00019 6.6E-09 76.6 20.1 185 47-245 43-246 (262)
393 3s94_A LRP-6, low-density lipo 98.1 0.063 2.2E-06 67.1 52.1 190 13-211 41-247 (619)
394 1hh8_A P67PHOX, NCF-2, neutrop 98.1 4.3E-05 1.5E-09 82.2 15.6 142 1076-1273 6-147 (213)
395 3upv_A Heat shock protein STI1 98.1 1.1E-05 3.8E-10 78.1 9.7 94 959-1102 5-98 (126)
396 1hh8_A P67PHOX, NCF-2, neutrop 98.1 2.5E-05 8.5E-10 84.1 13.5 128 939-1102 19-147 (213)
397 1k3i_A Galactose oxidase precu 98.1 0.0001 3.5E-09 94.4 21.3 265 16-289 190-530 (656)
398 1a17_A Serine/threonine protei 98.0 3.5E-05 1.2E-09 78.8 13.5 127 1134-1329 13-141 (166)
399 2vgx_A Chaperone SYCD; alterna 98.0 1.4E-05 4.7E-10 79.8 10.1 97 1132-1273 19-115 (148)
400 2xbg_A YCF48-like protein; pho 98.0 0.0061 2.1E-07 70.0 33.6 275 46-367 35-319 (327)
401 2hr2_A Hypothetical protein; a 98.0 2.9E-05 9.8E-10 76.0 11.3 105 960-1102 13-128 (159)
402 3qqz_A Putative uncharacterize 98.0 0.0019 6.5E-08 69.7 26.7 196 47-250 27-250 (255)
403 4e6h_A MRNA 3'-END-processing 98.0 0.0047 1.6E-07 77.6 34.2 193 1185-1429 339-554 (679)
404 2xcb_A PCRH, regulatory protei 98.0 1.2E-05 4.3E-10 79.7 8.6 97 956-1102 16-112 (142)
405 1w6s_A Methanol dehydrogenase 98.0 0.00054 1.8E-08 85.0 25.0 270 23-307 62-510 (599)
406 3upv_A Heat shock protein STI1 98.0 5.5E-05 1.9E-09 73.1 13.0 96 1133-1273 3-98 (126)
407 2ad6_A Methanol dehydrogenase 98.0 0.00024 8.1E-09 88.5 22.0 267 23-306 62-500 (571)
408 1p5q_A FKBP52, FK506-binding p 98.0 4.2E-05 1.4E-09 88.8 14.2 145 1073-1273 144-291 (336)
409 3tc9_A Hypothetical hydrolase; 98.0 0.0012 4.1E-08 79.0 27.3 232 13-251 138-428 (430)
410 3nok_A Glutaminyl cyclase; bet 98.0 0.00031 1.1E-08 74.9 19.2 182 47-243 55-254 (268)
411 4f3v_A ESX-1 secretion system 98.0 3.1E-05 1.1E-09 84.4 11.9 170 1115-1331 19-234 (282)
412 3nol_A Glutamine cyclotransfer 97.9 0.00038 1.3E-08 74.4 19.2 191 90-289 38-244 (262)
413 2xcb_A PCRH, regulatory protei 97.9 5.1E-05 1.8E-09 75.2 11.9 97 1132-1273 16-112 (142)
414 3sz7_A HSC70 cochaperone (SGT) 97.9 2.6E-05 9E-10 79.6 9.9 97 956-1102 9-105 (164)
415 3mbr_X Glutamine cyclotransfer 97.9 0.0011 3.6E-08 70.4 22.0 191 46-250 20-230 (243)
416 1k3i_A Galactose oxidase precu 97.9 0.00081 2.8E-08 86.1 25.8 248 51-302 190-499 (656)
417 1kv9_A Type II quinohemoprotei 97.9 0.0011 3.6E-08 84.7 26.1 58 568-625 437-494 (668)
418 2vyi_A SGTA protein; chaperone 97.9 0.00012 4.2E-09 70.8 13.3 119 1134-1321 12-130 (131)
419 1hxi_A PEX5, peroxisome target 97.9 2.6E-05 8.8E-10 74.6 7.9 92 962-1103 21-112 (121)
420 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00012 4.2E-09 74.6 13.5 97 1132-1273 9-105 (164)
421 2lni_A Stress-induced-phosphop 97.9 5.8E-05 2E-09 73.6 10.7 98 1131-1273 13-110 (133)
422 3rkv_A Putative peptidylprolyl 97.8 6.3E-05 2.1E-09 76.6 11.1 113 1134-1273 11-123 (162)
423 3q49_B STIP1 homology and U bo 97.8 0.00012 4.2E-09 71.7 12.9 98 955-1102 6-103 (137)
424 2p4o_A Hypothetical protein; p 97.8 0.0036 1.2E-07 71.4 26.8 226 47-291 32-279 (306)
425 1na0_A Designed protein CTPR3; 97.8 0.00017 5.9E-09 69.0 13.5 97 1132-1273 7-103 (125)
426 2vyi_A SGTA protein; chaperone 97.8 0.00018 6.1E-09 69.7 13.6 96 1016-1160 11-106 (131)
427 4hw6_A Hypothetical protein, I 97.8 0.0018 6.2E-08 77.4 24.5 229 13-251 140-431 (433)
428 3ei3_A DNA damage-binding prot 97.8 0.29 9.9E-06 65.6 59.8 265 15-298 330-634 (1158)
429 3mbr_X Glutamine cyclotransfer 97.8 0.0021 7.2E-08 68.1 21.8 190 90-288 16-222 (243)
430 2fbn_A 70 kDa peptidylprolyl i 97.8 3.1E-05 1.1E-09 82.1 7.9 142 1073-1267 35-176 (198)
431 2lni_A Stress-induced-phosphop 97.8 0.00011 3.7E-09 71.6 11.3 97 955-1101 13-109 (133)
432 4hw6_A Hypothetical protein, I 97.8 0.0044 1.5E-07 74.0 27.4 196 94-298 140-372 (433)
433 3nok_A Glutaminyl cyclase; bet 97.8 0.00085 2.9E-08 71.6 18.5 186 93-288 55-253 (268)
434 3dra_A Protein farnesyltransfe 97.8 0.0017 5.9E-08 72.6 21.8 207 1072-1409 63-286 (306)
435 3dra_A Protein farnesyltransfe 97.7 0.0011 3.8E-08 74.2 19.9 203 955-1273 64-284 (306)
436 3rkv_A Putative peptidylprolyl 97.7 0.00015 5.1E-09 73.8 11.9 113 958-1102 11-123 (162)
437 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 6.4E-05 2.2E-09 91.4 10.6 142 958-1160 268-412 (457)
438 2e2e_A Formate-dependent nitri 97.7 4.1E-05 1.4E-09 79.4 7.4 98 955-1102 41-141 (177)
439 1hxi_A PEX5, peroxisome target 97.7 7.4E-05 2.5E-09 71.4 8.5 93 1136-1273 19-111 (121)
440 3tc9_A Hypothetical hydrolase; 97.7 0.0051 1.7E-07 73.5 26.5 153 94-254 138-302 (430)
441 4a0p_A LRP6, LRP-6, low-densit 97.7 0.23 8E-06 62.0 55.6 193 13-215 38-245 (628)
442 2e2e_A Formate-dependent nitri 97.7 6.9E-05 2.4E-09 77.7 8.9 97 1132-1273 42-141 (177)
443 3v64_C Agrin; beta propeller, 97.7 0.011 3.6E-07 68.6 28.2 230 48-300 35-275 (349)
444 2if4_A ATFKBP42; FKBP-like, al 97.7 3.1E-05 1.1E-09 89.9 6.5 113 1075-1215 178-290 (338)
445 1flg_A Protein (quinoprotein e 97.7 0.0044 1.5E-07 77.1 26.3 269 25-307 70-523 (582)
446 3q49_B STIP1 homology and U bo 97.7 0.0003 1E-08 68.9 12.8 97 1132-1273 7-103 (137)
447 1elw_A TPR1-domain of HOP; HOP 97.7 0.00043 1.5E-08 65.4 13.3 95 1134-1273 4-98 (118)
448 1ihg_A Cyclophilin 40; ppiase 97.7 0.00013 4.5E-09 85.5 11.4 138 903-1098 226-363 (370)
449 1ihg_A Cyclophilin 40; ppiase 97.7 0.00015 5.3E-09 84.8 12.0 140 1076-1268 223-362 (370)
450 4a0p_A LRP6, LRP-6, low-densit 97.7 0.27 9.3E-06 61.4 58.3 221 60-302 8-239 (628)
451 3ei3_A DNA damage-binding prot 97.7 0.44 1.5E-05 63.9 47.6 201 25-242 525-755 (1158)
452 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00022 7.4E-09 86.7 13.6 141 1073-1269 265-407 (457)
453 3s94_A LRP-6, low-density lipo 97.7 0.27 9.4E-06 61.3 57.4 220 65-303 15-246 (619)
454 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00018 6.3E-09 76.0 11.4 138 1134-1325 38-176 (198)
455 1elr_A TPR2A-domain of HOP; HO 97.7 0.00019 6.5E-09 69.5 10.7 100 959-1102 5-105 (131)
456 2ad6_A Methanol dehydrogenase 97.6 0.0012 4E-08 82.3 19.8 198 103-307 62-342 (571)
457 1na0_A Designed protein CTPR3; 97.6 0.00031 1.1E-08 67.2 11.6 96 956-1101 7-102 (125)
458 3qqz_A Putative uncharacterize 97.6 0.01 3.5E-07 64.0 24.1 188 11-205 26-250 (255)
459 3ott_A Two-component system se 97.6 0.42 1.4E-05 62.1 55.6 327 11-377 62-408 (758)
460 1elw_A TPR1-domain of HOP; HOP 97.6 0.00022 7.6E-09 67.4 10.1 93 960-1102 6-98 (118)
461 3v65_B Low-density lipoprotein 97.6 0.0098 3.3E-07 70.0 25.6 229 50-301 80-319 (386)
462 1wao_1 Serine/threonine protei 97.5 2.7E-05 9.3E-10 95.0 3.3 127 1135-1330 7-135 (477)
463 2kck_A TPR repeat; tetratricop 97.5 7.8E-05 2.7E-09 69.9 5.8 93 960-1102 8-103 (112)
464 2xev_A YBGF; tetratricopeptide 97.5 0.00035 1.2E-08 67.6 10.7 96 1136-1273 4-102 (129)
465 2dba_A Smooth muscle cell asso 97.5 0.00035 1.2E-08 69.5 10.8 99 955-1102 25-125 (148)
466 1ijq_A LDL receptor, low-densi 97.5 0.024 8.1E-07 64.6 27.5 222 60-301 3-239 (316)
467 3v64_C Agrin; beta propeller, 97.5 0.071 2.4E-06 61.6 31.6 188 96-299 37-233 (349)
468 1ijq_A LDL receptor, low-densi 97.5 0.058 2E-06 61.4 30.2 178 111-299 8-194 (316)
469 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00011 3.8E-09 85.2 7.3 112 1134-1273 179-290 (338)
470 1elr_A TPR2A-domain of HOP; HO 97.5 0.00092 3.1E-08 64.5 12.9 102 1134-1273 4-105 (131)
471 2dba_A Smooth muscle cell asso 97.5 0.00085 2.9E-08 66.6 12.6 99 1016-1160 27-125 (148)
472 3qww_A SET and MYND domain-con 97.5 0.00054 1.9E-08 81.1 12.8 95 970-1102 310-408 (433)
473 1w6s_A Methanol dehydrogenase 97.4 0.016 5.3E-07 71.9 25.8 190 58-260 62-349 (599)
474 2xev_A YBGF; tetratricopeptide 97.4 0.00038 1.3E-08 67.3 9.1 94 962-1101 6-101 (129)
475 2kck_A TPR repeat; tetratricop 97.4 0.00028 9.6E-09 66.0 7.7 95 1134-1273 6-103 (112)
476 1zu2_A Mitochondrial import re 97.4 0.00014 4.7E-09 71.0 5.3 79 955-1048 33-122 (158)
477 3qww_A SET and MYND domain-con 97.4 0.00076 2.6E-08 79.8 12.8 94 1029-1160 310-408 (433)
478 1flg_A Protein (quinoprotein e 97.4 0.0045 1.6E-07 77.0 20.3 198 103-307 68-362 (582)
479 3ott_A Two-component system se 97.4 0.77 2.6E-05 59.6 59.3 312 9-371 19-353 (758)
480 1wao_1 Serine/threonine protei 97.4 9.4E-05 3.2E-09 90.2 5.0 98 955-1102 37-136 (477)
481 2ism_A Putative oxidoreductase 97.4 0.019 6.5E-07 66.5 24.1 220 13-242 32-333 (352)
482 3k9i_A BH0479 protein; putativ 97.4 0.00015 5.2E-09 68.7 5.2 64 1013-1102 24-87 (117)
483 3v65_B Low-density lipoprotein 97.3 0.058 2E-06 63.3 28.5 188 97-299 81-276 (386)
484 3qwp_A SET and MYND domain-con 97.3 0.0023 7.9E-08 75.9 16.4 97 968-1102 297-397 (429)
485 3p5b_L Low density lipoprotein 97.3 0.057 1.9E-06 63.7 28.4 222 60-301 85-321 (400)
486 3p5b_L Low density lipoprotein 97.3 0.14 4.8E-06 60.3 31.7 214 25-251 85-318 (400)
487 3kya_A Putative phosphatase; s 97.3 0.073 2.5E-06 63.3 28.5 234 13-254 140-476 (496)
488 3a9g_A Putative uncharacterize 97.3 0.037 1.3E-06 63.9 25.9 224 12-242 29-330 (354)
489 3k9i_A BH0479 protein; putativ 97.3 0.001 3.5E-08 62.9 10.5 64 1073-1160 24-87 (117)
490 3sov_A LRP-6, low-density lipo 97.3 0.053 1.8E-06 61.5 26.2 216 67-301 12-239 (318)
491 3qwp_A SET and MYND domain-con 97.2 0.0031 1.1E-07 74.8 15.5 96 955-1088 326-425 (429)
492 3sov_A LRP-6, low-density lipo 97.2 0.11 3.7E-06 58.9 27.5 177 110-299 10-196 (318)
493 3kya_A Putative phosphatase; s 97.2 0.094 3.2E-06 62.3 27.6 155 94-254 140-342 (496)
494 3sre_A PON1, serum paraoxonase 97.2 0.022 7.6E-07 64.8 21.2 171 14-189 52-275 (355)
495 2g8s_A Glucose/sorbosone dehyd 97.2 0.079 2.7E-06 61.2 26.5 234 13-251 19-350 (353)
496 2p9w_A MAL S 1 allergenic prot 97.2 0.015 5.2E-07 64.3 19.0 151 11-163 12-215 (334)
497 2l6j_A TPR repeat-containing p 97.2 0.00013 4.4E-09 68.4 2.2 99 959-1101 5-103 (111)
498 2xzh_A Clathrin heavy chain 1; 97.1 0.35 1.2E-05 52.7 28.4 222 16-245 71-323 (365)
499 1na3_A Designed protein CTPR2; 97.1 0.001 3.5E-08 59.3 7.6 87 954-1090 5-91 (91)
500 2pm7_A Protein WEB1, protein t 97.1 0.039 1.3E-06 63.4 21.9 233 1319-1592 144-380 (399)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-51 Score=555.64 Aligned_cols=723 Identities=13% Similarity=0.125 Sum_probs=518.2
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~ 77 (1637)
+....|+..|++++|||||++|++++.+|.|++||..+++ |...|++++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3445688999999999999999999999999999998765 788999999999999999999999999999987
Q ss_pred CCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC-ce-eeecccCCcEEEEEEec-CCCeEEEEeCC
Q psy12802 78 DWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN-KT-QTLYASNSFVVALCLNV-RGAGVLSGHAD 153 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~-~~-~~~~~~~~~v~~l~~s~-~g~~l~s~~~d 153 (1637)
+ +.+....+|.+.|++++|+|+++ +++++.||.|++||+.++ .. ..+.+|...|.+++|+| +++.|++++.|
T Consensus 87 ~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 87 G----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp C----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred C----cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 5 45556668999999999999999 999999999999999987 44 77889999999999999 89999999999
Q ss_pred CcEEEEEecCCCCccccccccccc-CCCCcEEEEecC--C--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEE
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSWPA--G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFT 227 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~ 227 (1637)
|+|++||+... .....+.. +...+.+++|+| + .+++++.||.|++|| .+++.+..+. .|...|+
T Consensus 163 g~v~vwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~v~ 232 (814)
T 3mkq_A 163 RTVKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-----GHMSNVS 232 (814)
T ss_dssp SEEEEEETTCS-----SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-----CCSSCEE
T ss_pred CeEEEEECCCC-----cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-----CCCCCEE
Confidence 99999999764 34444444 448999999986 3 899999999999999 7888888887 4666899
Q ss_pred EEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCE-EEEEecCCcEEEEEccccceee
Q psy12802 228 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIW 305 (1637)
Q Consensus 228 ~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-l~~~~~dg~v~iwd~~~~~~~~ 305 (1637)
+++|+|+|+.+++++.|+ |++|+..+..... ....+...+.+++|+|+|.. +++++.++.+.+|++......
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK-----TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT- 306 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEE-----EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCC-
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-----EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCce-
Confidence 999999999999999999 9999988765432 22334568999999999974 244555777889987544321
Q ss_pred eCcEEEEEecCCeEEEec-------------C------CCCCC-CceeEEecccCceeeEEEEecCceEEEEeCCCcEEE
Q psy12802 306 KGKFEMIYVSPSQVLVKP-------------L------SGESK-GRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLL 365 (1637)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~-------------~------~~~~~-~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i 365 (1637)
..+...+..+... + ..+.. .............+.+++|+|+|+++++++++.+.+
T Consensus 307 -----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i 381 (814)
T 3mkq_A 307 -----LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVI 381 (814)
T ss_dssp -----EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEE
T ss_pred -----eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEE
Confidence 1111111111100 0 00000 000111122333567777777777777766777777
Q ss_pred eeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCccee
Q psy12802 366 GDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTI 445 (1637)
Q Consensus 366 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I 445 (1637)
|++.. | ...+.+.|
T Consensus 382 ~~~~~-------~-----------------------------------------------------------~~~~~~~i 395 (814)
T 3mkq_A 382 YTALA-------W-----------------------------------------------------------RNKAFGKC 395 (814)
T ss_dssp EETTT-------T-----------------------------------------------------------EEEEEEEC
T ss_pred EECcc-------c-----------------------------------------------------------cccCCCce
Confidence 76422 1 00223567
Q ss_pred eeeeeccCCCeEEeeccCCcEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCc
Q psy12802 446 SALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 525 (1637)
Q Consensus 446 ~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~ 525 (1637)
++++|||||+++++++.+|.|++|+... ++.
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~l~~~~~-------------------------~~~------------------------ 426 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIKYYKNFK-------------------------EVT------------------------ 426 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEEEEETTE-------------------------ECT------------------------
T ss_pred EEEEEeCCCCeEEEEeCCCcEEEEECCC-------------------------Ccc------------------------
Confidence 8999999999999999999998885210 000
Q ss_pred ceEeeccccccccCcccccccccccccccccCCC---ceEEEeeccceEEEEEccCCcceEEecccCCccEEEeCcCcce
Q psy12802 526 RYLVARTLLTEFMNPHLISVRLNERKQVHSQQEN---KKLAYLLDLHTICVIDLITNLPTLHINHDSKIDWLELNETAHK 602 (1637)
Q Consensus 526 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~la~~~~~~~i~v~dl~~~~~~~~~~~~~~i~~l~~s~~g~~ 602 (1637)
..+. .+. |+||| +.+++++.+++|++||+.+++.+..+.+... .+.|||+|++
T Consensus 427 --------------~~v~-------~~~-~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~ 482 (814)
T 3mkq_A 427 --------------SWSV-------PMH-SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK--DVIWSDNGEL 482 (814)
T ss_dssp --------------TCCC-------CCS-SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE--EEEECTTSSE
T ss_pred --------------ceEE-------cCC-cCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC--EEEEcCCCCE
Confidence 1111 222 88888 6888999999999999999999888854443 9999999999
Q ss_pred eEee------cccceEEEEecc------------------cccee---eecccceEEEEecCCceeEecc-ccceeEEEe
Q psy12802 603 LLYR------DKKMRLTLLDIR------------------TSEKH---NILNYCTFVQWLPGSDVVVAQS-RHNACVWYN 654 (1637)
Q Consensus 603 L~~~------~~~~~~~l~d~~------------------t~~~~---~l~~~~~~v~w~~~~~~l~~~~-~~~l~v~~~ 654 (1637)
|++. +.+..+.+|.-. ..... .+...+.+..|. +++++..+ .+.+..+.
T Consensus 483 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~--~~~~i~~t~~~~~~~~~- 559 (814)
T 3mkq_A 483 VMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV--GDVFIFTTATNRLNYFV- 559 (814)
T ss_dssp EEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE--TTEEEEECTTSEEEEEE-
T ss_pred EEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEe--CCEEEEEcCCCeEEEEe-
Confidence 9999 666555454321 00111 123456677886 45666654 34444322
Q ss_pred cCCCCceeeecccCceEEEE-ecCCceEEEeccCCccccccchhhhhhhhcccccccHHHHHH-HHHHcCCChhhHHHHH
Q psy12802 655 IDTPDRITQFPVRGDIIDVI-RENGQSEILTQDGNHQLGYELDESLIEFGTAVHDSDFGKAIL-YLESLGINKKEAEGMW 732 (1637)
Q Consensus 655 ~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~A~~-~~~~~~~~~~~~~~~w 732 (1637)
.++..++......+..+- ..++....++.+......+.++...+.|.+++..++++.|.. ++..++. ....
T Consensus 560 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~----~~~~- 632 (814)
T 3mkq_A 560 --GGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEG----KDSL- 632 (814)
T ss_dssp --TTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCC----HHHH-
T ss_pred --CCeeEEEEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCc----hHHH-
Confidence 233333333333332211 123444444555566778888999999999999999999877 5544320 0111
Q ss_pred HHHHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhhcccCCCCCCchHHHHHHHHHHhcCHHHHHHHHHhcCc
Q psy12802 733 QNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNE 812 (1637)
Q Consensus 733 ~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~A~~~~~~~~~ 812 (1637)
..++. .....|.+++|.... .+
T Consensus 633 ~~~~~-------------------------------------------------------~l~~~~~~~~a~~~~---~~ 654 (814)
T 3mkq_A 633 TKIAR-------------------------------------------------------FLEGQEYYEEALNIS---PD 654 (814)
T ss_dssp HHHHH-------------------------------------------------------HHHHTTCHHHHHHHC---CC
T ss_pred HHHHH-------------------------------------------------------HHHhCCChHHheecC---CC
Confidence 11111 122233333333321 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHc
Q psy12802 813 IHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQN 892 (1637)
Q Consensus 813 ~~~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~ 892 (1637)
.....+++..+++|++|+++++.... +.. ++++|+++.+.|+++.|+.+|.++++++.+..|...
T Consensus 655 ~~~~f~~~l~~~~~~~A~~~~~~~~~--~~~-------------W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~ 719 (814)
T 3mkq_A 655 QDQKFELALKVGQLTLARDLLTDESA--EMK-------------WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS 719 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTCCC--HHH-------------HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchheehhhhcCCHHHHHHHHHhhCc--HhH-------------HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH
Confidence 34445566677888888777766542 233 334466677777777777777777777777666665
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCCCC--hHHHHHHHHHHHHh
Q psy12802 893 EPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKN--VTALEEEWGDHLIE 970 (1637)
Q Consensus 893 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~~~--~~~l~~~~~~~l~~ 970 (1637)
. .+.+.+..++......|+++.|..+|.+.|++++|+++|.+.++|++|+.+++...|.+ +..+...|+..|..
T Consensus 720 ~----~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~ 795 (814)
T 3mkq_A 720 F----NNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLIL 795 (814)
T ss_dssp T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred c----CCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 2 46677778888889999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cccHHHHH
Q psy12802 971 NKQYNAAI 978 (1637)
Q Consensus 971 ~~~~~~A~ 978 (1637)
.|+++.|.
T Consensus 796 ~~~~~~a~ 803 (814)
T 3mkq_A 796 NGKNTVSE 803 (814)
T ss_dssp TTCHHHHT
T ss_pred ccchhHHH
Confidence 99865443
No 2
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.3e-49 Score=530.98 Aligned_cols=746 Identities=14% Similarity=0.109 Sum_probs=508.9
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
.|+..|++++|||+|++|++++.||.|+|||+.++ ..+....+|..+|++++|+|+++ +++++.||.|++||+.+
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 48899999999999999999999999999999874 55566668999999999999999 99999999999999999
Q ss_pred Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC-C--eEEEEecC
Q psy12802 123 NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA-G--YILAAGSD 198 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~--~l~~~~~d 198 (1637)
++. ..+.+|.+.|.+++|+|+|+.|++++.||+|++||+.+.. .....+.+|..+|.+++|+| + .+++++.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----EEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 988 7888999999999999999999999999999999998742 45677788999999999998 3 89999999
Q ss_pred CeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC--CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeE
Q psy12802 199 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISA 274 (1637)
Q Consensus 199 ~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (1637)
|.|++|| .++.....+..+ +...+.+++|+| ++..+++++.++ |++||....... .....|...|.+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~v~~ 233 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTG----QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-----ATLEGHMSNVSF 233 (814)
T ss_dssp SEEEEEETTCSSCSEEEECC----CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-----EEEECCSSCEEE
T ss_pred CeEEEEECCCCcceeEEecC----CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-----EEEcCCCCCEEE
Confidence 9999999 667777666642 446899999999 999999999999 999998765432 222346779999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce-
Q psy12802 275 LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR- 353 (1637)
Q Consensus 275 l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~- 353 (1637)
++|+|+|++|++++.||.|++||+.+++.... .......+.+++|+|++.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-----------------------------~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT-----------------------------LNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEE-----------------------------ECCSSSSEEEEEECTTCGG
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------eecCCCcEEEEEEccCCCc
Confidence 99999999999999999999999976543221 111233789999999976
Q ss_pred -EEEEeCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeec--cCCCC-c
Q psy12802 354 -YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFA--WSPSK-S 429 (1637)
Q Consensus 354 -~lv~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~--~~~~~-~ 429 (1637)
+++++.++.+.+|++..... .+.++|++..++..+.+............ |.... .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 285 NYIASGFDNGFTVLSLGNDEP---------------------TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp GEEEEEETTEEEEEECSCCSC---------------------CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred eEEEEEeCCCEEEEEcCCCCc---------------------eeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence 67778899999998754322 13445544444443333211100000000 00000 0
Q ss_pred ccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEe
Q psy12802 430 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILK 509 (1637)
Q Consensus 430 ~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 509 (1637)
...........+...+++++|||||+++++++ +|.+.+|+....+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-------------------------------- 390 (814)
T 3mkq_A 344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-------------------------------- 390 (814)
T ss_dssp CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--------------------------------
T ss_pred cceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc--------------------------------
Confidence 00011111123456789999999999999998 899989885211000
Q ss_pred eccceeeeeEEEecCcceEeeccccccccCcccccccccccccccccCCCceEEEeeccceEEEEEccCCcceEEecccC
Q psy12802 510 SQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLLDLHTICVIDLITNLPTLHINHDS 589 (1637)
Q Consensus 510 ~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~la~~~~~~~i~v~dl~~~~~~~~~~~~~ 589 (1637)
.. +.+. .+. |+|||++++++..+++|.+|+.. -.|..
T Consensus 391 ------------------------~~----~~i~-------~~~-~spdg~~la~~~~~g~v~l~~~~-------~~~~~ 427 (814)
T 3mkq_A 391 ------------------------AF----GKCQ-------DFV-WGPDSNSYALIDETGQIKYYKNF-------KEVTS 427 (814)
T ss_dssp ------------------------EE----EECS-------EEE-ECTTSSCEEEECTTCCEEEEETT-------EECTT
T ss_pred ------------------------CC----CceE-------EEE-EeCCCCeEEEEeCCCcEEEEECC-------CCccc
Confidence 00 1111 233 89999999999999999999732 24667
Q ss_pred CccEEEeCcCc---ceeEeecccceEEEEeccccceeeecc-cceEEEEecCCceeEec------ccccee-EEEecCC-
Q psy12802 590 KIDWLELNETA---HKLLYRDKKMRLTLLDIRTSEKHNILN-YCTFVQWLPGSDVVVAQ------SRHNAC-VWYNIDT- 657 (1637)
Q Consensus 590 ~i~~l~~s~~g---~~L~~~~~~~~~~l~d~~t~~~~~l~~-~~~~v~w~~~~~~l~~~------~~~~l~-v~~~~~~- 657 (1637)
.+..+.|+|+| .+|++++.++.+++||+.+++.+.... ....+.|+|+++.++.. ..+.++ +|++.+.
T Consensus 428 ~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~ 507 (814)
T 3mkq_A 428 WSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAY 507 (814)
T ss_dssp CCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHH
T ss_pred eEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCCEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHh
Confidence 88899999999 689999999999999999988765443 45589999999988887 555554 4554311
Q ss_pred ---------------CCceeee-cccCceEEEEecCCceEEEeccCCccccccchhhhhhhhcccccccHHHHHHHHHHc
Q psy12802 658 ---------------PDRITQF-PVRGDIIDVIRENGQSEILTQDGNHQLGYELDESLIEFGTAVHDSDFGKAILYLESL 721 (1637)
Q Consensus 658 ---------------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~A~~~~~~~ 721 (1637)
.+.+... .+...+....+. +...++.... +...|.+......+ ..++..-+ + +
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~-~~~~i~~t~~-~~~~~~~~~~~~~~-~~~~~~~~-----~---~ 576 (814)
T 3mkq_A 508 LEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV-GDVFIFTTAT-NRLNYFVGGKTYNL-AHYTKEMY-----L---L 576 (814)
T ss_dssp HHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE-TTEEEEECTT-SEEEEEETTEEEEE-EECSSCCE-----E---E
T ss_pred hhhhhccCCccccchhhheeeeeEeccEEEeeEEe-CCEEEEEcCC-CeEEEEeCCeeEEE-EECCccEE-----E---E
Confidence 1111111 112222222222 1122221111 11111100000000 00000000 0 0
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhhcccCCCCCCchHHHHHHHHHHhcCHH
Q psy12802 722 GINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFK 801 (1637)
Q Consensus 722 ~~~~~~~~~~w~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~ 801 (1637)
+..+ .+. .+.++ ++..+. .....+........++..++++
T Consensus 577 ~~~~-----------------------------~~~--~l~~~-------d~~~~~--~~~~l~~~~~~~~~~~~~~~~~ 616 (814)
T 3mkq_A 577 GYLA-----------------------------RDN--KVYLA-------DREVHV--YGYEISLEVLEFQTLTLRGEIE 616 (814)
T ss_dssp EEEG-----------------------------GGT--EEEEE-------CTTCCE--EEEECCHHHHHHHHHHHTTCHH
T ss_pred EEEe-----------------------------cCC--EEEEE-------cCCCCE--EEEEECcHHHHHhHHHHhCCHH
Confidence 0000 000 00000 000000 0112334456677888999999
Q ss_pred HHHHHHH---h-cCcHHHHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHH
Q psy12802 802 VAEGIYL---E-NNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYY 877 (1637)
Q Consensus 802 ~A~~~~~---~-~~~~~~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~g~~~~Ai~~y 877 (1637)
+|++.++ + .+..+.+..++.+.+.+++|+++.+.. .. ...+....|+++.|.++.
T Consensus 617 ~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----~~----------------~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 617 EAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQ-----DQ----------------KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCH-----HH----------------HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCc-----ch----------------heehhhhcCCHHHHHHHH
Confidence 9998444 4 555688888889999999998766431 00 012334455555555543
Q ss_pred HHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCCCCh
Q psy12802 878 LKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNV 957 (1637)
Q Consensus 878 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~~~~ 957 (1637)
+.. .++..+..+|....+.++++.|.++|.++++++.+...|...++.+.
T Consensus 676 -------------~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~------------- 725 (814)
T 3mkq_A 676 -------------TDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG------------- 725 (814)
T ss_dssp -------------TTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH-------------
T ss_pred -------------Hhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH-------------
Confidence 332 45667777777777777777766666666666666666654443333
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhCCHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ-DIAQHVKTLAQHFKTVKDYKTA 1036 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 1036 (1637)
...++......|+++.|..+|.+.|++++|+++|.+.++|++|+.+++...+++ ..+.+...++..+...|+++.|
T Consensus 726 ---~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 726 ---LVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ---HHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 346778888999999999999999999999999999999999999999876543 2567888899999999987555
Q ss_pred H
Q psy12802 1037 E 1037 (1637)
Q Consensus 1037 ~ 1037 (1637)
.
T Consensus 803 ~ 803 (814)
T 3mkq_A 803 E 803 (814)
T ss_dssp T
T ss_pred H
Confidence 3
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-49 Score=510.03 Aligned_cols=540 Identities=16% Similarity=0.207 Sum_probs=425.8
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC------CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 7 TDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG------RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~------~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
...|.+.|++++|||||++||+++.|++|+|||.... .|...|++++|||||++|++++.|++|+|||+..
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~--- 88 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--- 88 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC---
Confidence 3578999999999999999999999999999996422 2899999999999999999999999999999753
Q ss_pred CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEE
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRY 159 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iw 159 (1637)
+.+....+|..+|.+++|+|+++ +++++.|+.+++|+..........++...+.++.++|++..+++++.++.+++|
T Consensus 89 --~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (577)
T 2ymu_A 89 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred --CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecc
Confidence 45556678999999999999999 999999999999998887778888999999999999999999999999999999
Q ss_pred EecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCE
Q psy12802 160 YVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA 237 (1637)
Q Consensus 160 d~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 237 (1637)
+... ........|...|.++.|+|+ .+++++.|+.|++||.+++.+..+. .|...|.+++|+|+|+.
T Consensus 167 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 167 NRNG------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp CTTS------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE-----CCSSCEEEEEECTTSSC
T ss_pred ccce------eeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEe-----cCCCCEEEEEECCCCCE
Confidence 8654 455667789999999999984 8999999999999999999998888 46668999999999999
Q ss_pred EEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecC
Q psy12802 238 VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSP 316 (1637)
Q Consensus 238 l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 316 (1637)
|++++.|+ |++|+.+.... .....|...|.+++|+|+++.|++++.|+.|++||.....
T Consensus 236 l~~~~~d~~i~~w~~~~~~~------~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~-------------- 295 (577)
T 2ymu_A 236 IASASDDKTVKLWNRNGQLL------QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-------------- 295 (577)
T ss_dssp EEEEETTSCEEEECTTSCEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------------
T ss_pred EEEEeCCCEEEEEeCCCCEE------EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE--------------
Confidence 99999999 99998643211 2334567899999999999999999999999999974211
Q ss_pred CeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEecCceEE
Q psy12802 317 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVC 395 (1637)
Q Consensus 317 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1637)
+.....+...|.+++|+|++.++++ +.++++++||+.+..+..+.- ...++.+
T Consensus 296 ----------------~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~----------~~~~v~~ 349 (577)
T 2ymu_A 296 ----------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTG----------HSSSVWG 349 (577)
T ss_dssp ----------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECC----------CSSCEEE
T ss_pred ----------------EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeC----------CCCCEEE
Confidence 1111112337899999999877766 788999999998766654321 1345678
Q ss_pred EEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhh
Q psy12802 396 LVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 475 (1637)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~ 475 (1637)
++|+|+...++..+.++.+ ++|+.+... ......|...|++++|+|||++|++++.||.|++||....
T Consensus 350 ~~~s~~g~~l~~~~~dg~v-----~~~~~~~~~------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~- 417 (577)
T 2ymu_A 350 VAFSPDGQTIASASDDKTV-----KLWNRNGQL------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ- 417 (577)
T ss_dssp EEECTTSSEEEEEETTSEE-----EEEETTCCE------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-
T ss_pred EEECCCCCEEEEEeCCCEE-----EEEcCCCCE------EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-
Confidence 9999988888888777654 555533220 0122367889999999999999999999999999984211
Q ss_pred hhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeecccccccc----C----cccccccc
Q psy12802 476 TIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFM----N----PHLISVRL 547 (1637)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~----~----~~~~~~~~ 547 (1637)
.+..+. .+...+..++|+|++++++....+..+. . ..+.....
T Consensus 418 -----------------~~~~~~------------~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~ 468 (577)
T 2ymu_A 418 -----------------LLQTLT------------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSS 468 (577)
T ss_dssp -----------------EEEEEE------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSS
T ss_pred -----------------EEEEec------------CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCC
Confidence 111111 1223456677777777666543211100 0 11111222
Q ss_pred cccccccccCCCceEEEeeccceEEEEEccCCcceEEe-cccCCccEEEeCcCcceeEeecccceEEEEeccccceee-e
Q psy12802 548 NERKQVHSQQENKKLAYLLDLHTICVIDLITNLPTLHI-NHDSKIDWLELNETAHKLLYRDKKMRLTLLDIRTSEKHN-I 625 (1637)
Q Consensus 548 ~~~~~~~~s~d~~~la~~~~~~~i~v~dl~~~~~~~~~-~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d~~t~~~~~-l 625 (1637)
....+. |+||++++++++.|++|++|+. +++.+..+ .|...|.++.|+|+|++|++++.++.|++||.. ++... +
T Consensus 469 ~v~~~~-~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~ 545 (577)
T 2ymu_A 469 SVRGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 545 (577)
T ss_dssp CEEEEE-ECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE
T ss_pred CEEEEE-EcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEE
Confidence 233455 9999999999999999999995 66666666 799999999999999999999999999999974 44433 2
Q ss_pred ---cccceEEEEecCCceeEe-ccccceeEE
Q psy12802 626 ---LNYCTFVQWLPGSDVVVA-QSRHNACVW 652 (1637)
Q Consensus 626 ---~~~~~~v~w~~~~~~l~~-~~~~~l~v~ 652 (1637)
...++.+.|+||++.|++ ..++.+.+|
T Consensus 546 ~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 546 TGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 235788999999987776 567788887
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-49 Score=508.79 Aligned_cols=516 Identities=16% Similarity=0.149 Sum_probs=397.4
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------cccceEEEEECCCCCeEEEEECC----CeEEEE
Q psy12802 7 TDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR---------KSYVVKGLAFSPDSTKLAVAQSD----NIIFIY 73 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~---------h~~~V~~~~~spd~~~la~~~~d----~~i~iw 73 (1637)
...|...|++++|||||++||+|+.|++|++||+.+++ |...|.+++|+|||++|++++.+ +.|++|
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 34688899999999999999999999999999986533 67899999999999999998865 478888
Q ss_pred EcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEE
Q psy12802 74 KLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSG 150 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~ 150 (1637)
|... ......+|...|++++|+|++. +++++.|++|++||..+++. .++.+|...|.+++|+|+|++|++|
T Consensus 135 d~~~------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 135 DTGT------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp TTCC------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eCCC------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 7533 2345568999999999999986 89999999999999998887 7889999999999999999999999
Q ss_pred eCCCcEEEEEecCCCCcccccccccc-------cCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCC
Q psy12802 151 HADGSIVRYYVTEDASNFDQQQGRVV-------QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPH 220 (1637)
Q Consensus 151 ~~dg~i~iwd~~~~~~g~~~~~~~~~-------~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~ 220 (1637)
+.|++|++||+.+. .+...+. +|...|.+++|+|+ .+++++.|++|++|| .+++.+.++.....
T Consensus 209 s~D~~i~lwd~~~g-----~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~- 282 (611)
T 1nr0_A 209 GGDGTIVLYNGVDG-----TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR- 282 (611)
T ss_dssp ETTSCEEEEETTTC-----CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-
T ss_pred ECCCcEEEEECCCC-----cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC-
Confidence 99999999998763 4444442 79999999999984 899999999999999 78888888875422
Q ss_pred CCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 221 YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 221 ~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
+......+.| ++..+++++.++ +++|+....... .....|...|.+++|+|||++|++++.||+|++||+.
T Consensus 283 -~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~-----~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 283 -IEDQQLGIIW--TKQALVSISANGFINFVNPELGSID-----QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp -GGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -ccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcc-----eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 3445666666 688999999999 999997654321 2234677899999999999999999999999999997
Q ss_pred ccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeeccccceeeeecC
Q psy12802 300 LKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWP 379 (1637)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~~~~~~ 379 (1637)
+++.... +...+...|.++.|++++.++.++.++++++|++.+.......
T Consensus 355 ~~~~~~~----------------------------~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~-- 404 (611)
T 1nr0_A 355 TGISNRV----------------------------FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK-- 404 (611)
T ss_dssp TCCEEEC----------------------------SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTS--
T ss_pred CCceeee----------------------------cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccc--
Confidence 6543211 0011234789999999898888899999999998765432110
Q ss_pred CCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEe
Q psy12802 380 DSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC 459 (1637)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~ 459 (1637)
.....+.....+++|+|++..++....+. +++|. . .....+.+...+++++|||||++|++
T Consensus 405 ----~~~~~~~~~~~~~~~s~dg~~~~~~~~~~------v~~~~--~-------~~~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 405 ----AVANKLSSQPLGLAVSADGDIAVAACYKH------IAIYS--H-------GKLTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp ----CCEEECSSCEEEEEECTTSSCEEEEESSE------EEEEE--T-------TEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred ----eeeeecCCCCcEEEEeCCCcEEEEEeCce------EEEEe--C-------CceeeeecCCCceEEEEeCCCCEEEE
Confidence 01122334456788888653333333222 33443 1 11122346678999999999999999
Q ss_pred eccCCcEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeeccccccccC
Q psy12802 460 GGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFMN 539 (1637)
Q Consensus 460 g~~dg~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~ 539 (1637)
|+.||+|++||..... .. .+.. ..+ .
T Consensus 466 gs~D~~v~lwd~~~~~------~~---------~~~~-~~h--------------------------------------~ 491 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGAS------VS---------EVKT-IVH--------------------------------------P 491 (611)
T ss_dssp EETTSEEEEEEEETTE------EE---------EEEE-EEC--------------------------------------S
T ss_pred eCCCCeEEEEEccCCc------ee---------eeec-cCC--------------------------------------C
Confidence 9999999999963211 00 0000 000 0
Q ss_pred cccccccccccccccccCCCceEEEeeccceEEEEEccC-CcceEE--ec-ccCCccEEEeCcCcceeEeecccceEEEE
Q psy12802 540 PHLISVRLNERKQVHSQQENKKLAYLLDLHTICVIDLIT-NLPTLH--IN-HDSKIDWLELNETAHKLLYRDKKMRLTLL 615 (1637)
Q Consensus 540 ~~~~~~~~~~~~~~~~s~d~~~la~~~~~~~i~v~dl~~-~~~~~~--~~-~~~~i~~l~~s~~g~~L~~~~~~~~~~l~ 615 (1637)
..+ ..+. |||||++|++++.|++|++|++.+ ++.+.. .. |...|.++.|||||++|++++.|+.+++|
T Consensus 492 ~~v-------~~v~-fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 492 AEI-------TSVA-FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp SCE-------EEEE-ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred Cce-------EEEE-ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 112 2233 999999999999999999999987 555443 33 99999999999999999999999999999
Q ss_pred eccccce-e-ee-----cccceEEEEecCCceeEeccccceeEEE
Q psy12802 616 DIRTSEK-H-NI-----LNYCTFVQWLPGSDVVVAQSRHNACVWY 653 (1637)
Q Consensus 616 d~~t~~~-~-~l-----~~~~~~v~w~~~~~~l~~~~~~~l~v~~ 653 (1637)
|+.++.. . .. ...+..+.|+|++.++.+..++.+.+|.
T Consensus 564 ~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608 (611)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEe
Confidence 9988642 2 22 2357889999999966668888888884
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-45 Score=476.55 Aligned_cols=504 Identities=15% Similarity=0.187 Sum_probs=400.3
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC------CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG------RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 8 ~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~------~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
..|...|++++|||||++|++++.|++|++||.... .|...|.+++|+||+++|++++.|+.+++|+...
T Consensus 54 ~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~---- 129 (577)
T 2ymu_A 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---- 129 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC----
T ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc----
Confidence 468899999999999999999999999999997532 2788999999999999999999999999999765
Q ss_pred ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEE
Q psy12802 82 KKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYY 160 (1637)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd 160 (1637)
........+...|.++.|+|++. +++++.++.+++|+...........|...|.++.|+|+|+.+++++.||.|++||
T Consensus 130 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~ 208 (577)
T 2ymu_A 130 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208 (577)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -ceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence 23445567899999999999999 9999999999999987776688889999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEE
Q psy12802 161 VTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV 238 (1637)
Q Consensus 161 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 238 (1637)
... +.+..+.+|...|.+++|+|+ .+++++.|+.|++||.+++.+..+. .|...|.+++|+|+|+.+
T Consensus 209 ~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~-----~~~~~v~~v~~~~d~~~l 277 (577)
T 2ymu_A 209 RNG------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVNGVAFRPDGQTI 277 (577)
T ss_dssp TTS------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECTTSSEE
T ss_pred CCC------cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEe-----cCCCCEEEEEEcCCCCEE
Confidence 653 677888899999999999984 8999999999999998899888887 466699999999999999
Q ss_pred EEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCC
Q psy12802 239 VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPS 317 (1637)
Q Consensus 239 ~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 317 (1637)
++++.++ +++|+.+.... .....|...|.+++|+|+++.|++++.||+|++||......
T Consensus 278 ~~~~~d~~i~~w~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-------------- 337 (577)
T 2ymu_A 278 ASASDDKTVKLWNRNGQLL------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-------------- 337 (577)
T ss_dssp EEEETTSCEEEEETTSCEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--------------
T ss_pred EEEeCCCEEEEEeCCCcEE------EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--------------
Confidence 9999999 99999653211 22345778999999999999999999999999999853321
Q ss_pred eEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEE
Q psy12802 318 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCL 396 (1637)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1637)
.....+...|.+++|+|+++++++ ..++.+++||..+..+..+.. ...++.++
T Consensus 338 ----------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~----------~~~~v~~~ 391 (577)
T 2ymu_A 338 ----------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG----------HSSSVRGV 391 (577)
T ss_dssp ----------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC----------CSSCEEEE
T ss_pred ----------------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC----------CCCCeEEE
Confidence 111122347899999999887776 788999999976544433321 23467789
Q ss_pred EEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhhh
Q psy12802 397 VFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT 476 (1637)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~ 476 (1637)
.|+|++..++..+.+..+ ++|+.+... ......|...|++++|+||+++|++++.||.|++||....
T Consensus 392 ~~s~dg~~l~~~~~d~~v-----~~~~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-- 458 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTV-----KLWNRNGQL------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-- 458 (577)
T ss_dssp EECTTSSCEEEEETTSEE-----EEECTTCCE------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--
T ss_pred EECCCCCEEEEEeCCCEE-----EEEeCCCCE------EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--
Confidence 999988788887777544 555532210 0123368889999999999999999999999999985211
Q ss_pred hhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeecccccccc----C----ccccccccc
Q psy12802 477 IWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFM----N----PHLISVRLN 548 (1637)
Q Consensus 477 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~----~----~~~~~~~~~ 548 (1637)
.+..+ ..+...+..++|+|++++++.......+. . ..+......
T Consensus 459 ----------------~~~~~------------~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~ 510 (577)
T 2ymu_A 459 ----------------LLQTL------------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 510 (577)
T ss_dssp ----------------EEEEE------------ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSC
T ss_pred ----------------EEEEE------------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCC
Confidence 01111 12234566677777777666542211100 0 011112223
Q ss_pred ccccccccCCCceEEEeeccceEEEEEccCCcceEEe-cccCCccEEEeCcCcceeEeecccceEEEEe
Q psy12802 549 ERKQVHSQQENKKLAYLLDLHTICVIDLITNLPTLHI-NHDSKIDWLELNETAHKLLYRDKKMRLTLLD 616 (1637)
Q Consensus 549 ~~~~~~~s~d~~~la~~~~~~~i~v~dl~~~~~~~~~-~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d 616 (1637)
...+. |+|||++|++++.|++|++||. +++.+..+ +|...|.++.|+|||++|++++.|+.|++||
T Consensus 511 v~~l~-~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 511 VRGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEE-ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEE-EcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 34556 9999999999999999999996 66777766 8999999999999999999999999999997
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8e-46 Score=477.16 Aligned_cols=536 Identities=11% Similarity=0.087 Sum_probs=389.3
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
.+...+..++|||||++|++++ ++.|++|++.++. |...|++++|||||++||+|+.|++|+|||+.++.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~-- 92 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-- 92 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc--
Confidence 3456778899999999999988 5699999997643 88999999999999999999999999999986532
Q ss_pred ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC----CcEEEEEcCCCce-eeecccCCcEEEEEEecCCC-eEEEEeCCC
Q psy12802 82 KKVICNKFIQQCPVTTMVWLADGP-IIYGQSD----GKIKAAHVKANKT-QTLYASNSFVVALCLNVRGA-GVLSGHADG 154 (1637)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d----~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~-~l~s~~~dg 154 (1637)
........+|.++|.+++|+|+|+ +++++.+ +.|++|| ++.. ..+.+|...|.+++|+|++. .|++|+.|+
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 223334557999999999999999 8887764 4677776 4555 77899999999999999987 599999999
Q ss_pred cEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccC--CCCCCccEEEE
Q psy12802 155 SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTA--PHYKEREFTVA 229 (1637)
Q Consensus 155 ~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~--~~~~~~~i~~~ 229 (1637)
+|++||... + ++...+.+|...|.+++|+|+ .+++++.|++|++|| .+++.+..+.... ...|...|.++
T Consensus 171 ~v~lwd~~~---~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 171 TVAIFEGPP---F--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp CEEEEETTT---B--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred eEEEEECCC---C--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence 999999765 2 667788999999999999984 899999999999999 8888887774210 01377799999
Q ss_pred EECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCc
Q psy12802 230 CSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK 308 (1637)
Q Consensus 230 ~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~ 308 (1637)
+|+|+|+.|++++.|+ |++||+.+........ ....+...+..+.| ++..+++++.||.+++|+..+++..
T Consensus 246 ~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~---- 317 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIP--VGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSID---- 317 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEE----
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCceeeeec--CCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcc----
Confidence 9999999999999999 9999987654321110 00112234556666 6788999999999999998644311
Q ss_pred EEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCcee
Q psy12802 309 FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKF 387 (1637)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 387 (1637)
.....+...|++++|+|+++++++ +.|++|++||+.++......
T Consensus 318 -------------------------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~---------- 362 (611)
T 1nr0_A 318 -------------------------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF---------- 362 (611)
T ss_dssp -------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS----------
T ss_pred -------------------------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec----------
Confidence 111122347999999999887777 78999999998765442210
Q ss_pred EecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEE
Q psy12802 388 YFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 467 (1637)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~ 467 (1637)
...|...|.+++|++++ .+++++.|++++
T Consensus 363 --------------------------------------------------~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~ 391 (611)
T 1nr0_A 363 --------------------------------------------------PDVHATMITGIKTTSKG-DLFTVSWDDHLK 391 (611)
T ss_dssp --------------------------------------------------SCSCSSCEEEEEECTTS-CEEEEETTTEEE
T ss_pred --------------------------------------------------ccCCcceEEEEEECCCC-cEEEEEcCCceE
Confidence 01456778999999775 788999999999
Q ss_pred EehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeecccccccc--Ccc--cc
Q psy12802 468 LFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFM--NPH--LI 543 (1637)
Q Consensus 468 lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~--~~~--~~ 543 (1637)
+|+........... +..........++++++++.++.....+..+ .+. ..
T Consensus 392 ~w~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 392 VVPAGGSGVDSSKA--------------------------VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp EECSSSSSSCTTSC--------------------------CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred EeecCCccccccce--------------------------eeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 99964322110000 0000111223344555554433322111000 000 00
Q ss_pred cccccccccccccCCCceEEEeeccceEEEEEccCCcc--eEEecccCCccEEEeCcCcceeEeecccceEEEEeccc-c
Q psy12802 544 SVRLNERKQVHSQQENKKLAYLLDLHTICVIDLITNLP--TLHINHDSKIDWLELNETAHKLLYRDKKMRLTLLDIRT-S 620 (1637)
Q Consensus 544 ~~~~~~~~~~~~s~d~~~la~~~~~~~i~v~dl~~~~~--~~~~~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d~~t-~ 620 (1637)
.......++. |+|||+++++++.|++|++||+.++.. +....|...|.++.|||+|++|++++.++.+.+||+.+ +
T Consensus 446 ~~~~~v~~va-~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 446 PISYNSSCVA-LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp ECSSCEEEEE-ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred ecCCCceEEE-EeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 1112233455 999999999999999999999987653 23457999999999999999999999999999999987 4
Q ss_pred ceee------ecccceEEEEecCCceeEe-ccccceeEEEecCCCC-ce-eee-cc-cCceEEEEec
Q psy12802 621 EKHN------ILNYCTFVQWLPGSDVVVA-QSRHNACVWYNIDTPD-RI-TQF-PV-RGDIIDVIRE 676 (1637)
Q Consensus 621 ~~~~------l~~~~~~v~w~~~~~~l~~-~~~~~l~v~~~~~~~~-~~-~~~-~~-~~~v~~~~~~ 676 (1637)
+... ....+..+.|+|+++.|+. ..++.+.+|. .+.+. .+ ... .. .+.|..+...
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~-~~~~~~~~~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN-MNKPSDHPIIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE-TTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE-CCCcccccchhhccCcccCeeEEEEc
Confidence 4332 2235788999999988776 5566777764 44443 22 222 23 3556665543
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-45 Score=512.46 Aligned_cols=539 Identities=11% Similarity=0.093 Sum_probs=411.0
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 8 ~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
..|...|++++|||||+++++|+.||+|++||..+++ |...|++++|||+|++|++++.||+|++||+.++
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-- 689 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-- 689 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--
Confidence 4578999999999999999999999999999998875 7899999999999999999999999999999885
Q ss_pred CceeEeeccCCCCCEEEEEEcCCCC---EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcE
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLADGP---IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSI 156 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~~~---l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i 156 (1637)
+.+....+|...|.+++|+|++. +++|+.|+.|++||+.++++ ..+.+|.+.|.+++|+|+|+.+++++.||+|
T Consensus 690 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 690 --KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred --ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 55556668999999999999544 78899999999999999998 8889999999999999999999999999999
Q ss_pred EEEEecCCCCcccccccccc-------------cCCCCcEEEEecCC-eEEEEecCCeEEEEe-CCCceeEEeeccCCCC
Q psy12802 157 VRYYVTEDASNFDQQQGRVV-------------QHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHY 221 (1637)
Q Consensus 157 ~iwd~~~~~~g~~~~~~~~~-------------~~~~~v~~~~~~~~-~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~ 221 (1637)
++||+.+. .....+. .+...+.+++|+|+ ..+.++.++.+.+|| .++..+..+.. .
T Consensus 768 ~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~----~ 838 (1249)
T 3sfz_A 768 RLWDVRSA-----NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT----G 838 (1249)
T ss_dssp EEEEGGGT-----EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC----S
T ss_pred EEEeCCCC-----cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC----C
Confidence 99999864 2222211 23447889999984 444444589999999 77777777663 4
Q ss_pred CCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc
Q psy12802 222 KEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 222 ~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
|...+.+++|+|+|+.+++++.++ |++|++...... .....|...|.+++|+|+|+.+++++.||.|++|++..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~-----~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV-----ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee-----eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 677899999999999999999999 999999876543 23346778999999999999999999999999999754
Q ss_pred cceeee------------------------------------------Cc-EEEEEec----------CCeEEEecCCCC
Q psy12802 301 KRTIWK------------------------------------------GK-FEMIYVS----------PSQVLVKPLSGE 327 (1637)
Q Consensus 301 ~~~~~~------------------------------------------~~-~~~~~~~----------~~~~~v~~~~~~ 327 (1637)
...... .. ....+.. ++.+.+.++.++
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 211000 00 0111111 222333333333
Q ss_pred CCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEE
Q psy12802 328 SKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSII 406 (1637)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (1637)
........+...|+++.|+|+++++++ +.++.|.+||+.++......- ....+.++.++|+.. ++
T Consensus 994 ---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~-l~ 1059 (1249)
T 3sfz_A 994 ---RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA----------HQETVKDFRLLQDSR-LL 1059 (1249)
T ss_dssp ---SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBC----------CSSCEEEEEECSSSE-EE
T ss_pred ---ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEec----------CCCcEEEEEEcCCCc-EE
Confidence 233333334457999999999877776 788999999998877653221 234567888988654 44
Q ss_pred EecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhhhhhcCceeEEE
Q psy12802 407 EYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIY 486 (1637)
Q Consensus 407 ~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~~~~~~~~~~~ 486 (1637)
..+.++. +++|+....... .....|.+.|++++|||||+.|++++.||+|++||......
T Consensus 1060 ~~~~dg~-----v~vwd~~~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~---------- 1119 (1249)
T 3sfz_A 1060 SWSFDGT-----VKVWNVITGRIE-----RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP---------- 1119 (1249)
T ss_dssp EEESSSE-----EEEEETTTTCCC-----EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC----------
T ss_pred EEECCCc-----EEEEECCCCcee-----EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce----------
Confidence 4444443 355555433111 12236788999999999999999999999999999743210
Q ss_pred ecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeeccccccccCcccccccccccccccccCCCceEEEee
Q psy12802 487 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLL 566 (1637)
Q Consensus 487 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~la~~~ 566 (1637)
+..+.+ ......++. |+|||+++++++
T Consensus 1120 -------~~~l~~---------------------------------------------h~~~v~~~~-~s~dg~~lat~~ 1146 (1249)
T 3sfz_A 1120 -------LHELKG---------------------------------------------HNGCVRCSA-FSLDGILLATGD 1146 (1249)
T ss_dssp -------SBCCCC---------------------------------------------CSSCEEEEE-ECSSSSEEEEEE
T ss_pred -------eeeecc---------------------------------------------CCCcEEEEE-ECCCCCEEEEEe
Confidence 000111 011112334 899999999999
Q ss_pred ccceEEEEEccCCcceEEe----------cccCCccEEEeCcCcceeEeecccceEEEEeccccceeeecc----cceEE
Q psy12802 567 DLHTICVIDLITNLPTLHI----------NHDSKIDWLELNETAHKLLYRDKKMRLTLLDIRTSEKHNILN----YCTFV 632 (1637)
Q Consensus 567 ~~~~i~v~dl~~~~~~~~~----------~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d~~t~~~~~l~~----~~~~v 632 (1637)
.|++|++||+.+++.+..+ .|...|..+.|||+|++|++++ +.+.+||+.+++...... .+..+
T Consensus 1147 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A 1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKI 1224 (1249)
T ss_dssp TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCC
T ss_pred CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEE
Confidence 9999999999998877643 5888999999999999999886 899999999987654432 46789
Q ss_pred EEecCCceeEe-ccccceeEEE
Q psy12802 633 QWLPGSDVVVA-QSRHNACVWY 653 (1637)
Q Consensus 633 ~w~~~~~~l~~-~~~~~l~v~~ 653 (1637)
.|+|++..+++ ..++.+++|-
T Consensus 1225 ~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1225 HVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp EECSSSCCEEEECTTCCEEEEC
T ss_pred EECCCCCEEEEecCCcEEEEEe
Confidence 99999876665 6667778764
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-41 Score=440.91 Aligned_cols=533 Identities=12% Similarity=0.099 Sum_probs=364.3
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----C-------cccc-eEEEEECC--CCCeEEEEECCCeEEEEE
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG----R-------KSYV-VKGLAFSP--DSTKLAVAQSDNIIFIYK 74 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~----~-------h~~~-V~~~~~sp--d~~~la~~~~d~~i~iw~ 74 (1637)
.|...|++++|||||++|++++ ++.|++||+.++ + |... |++++|+| ++++|++++.||.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4678899999999999999998 789999999987 3 7888 99999999 999999999999999999
Q ss_pred cCCCCC----CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC----CcEEEEEcCCCce-eeecccCCcEEEEEEecCC
Q psy12802 75 LGDDWG----DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD----GKIKAAHVKANKT-QTLYASNSFVVALCLNVRG 144 (1637)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d----~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g 144 (1637)
+.++.. ..+.......|..+|.+++|+|+++ +++++.+ +.|++|| +++. ..+.+|...|.+++|+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence 964200 1244555567899999999999999 8888877 6888888 4555 8888999999999999999
Q ss_pred C-eEEEEeCCCcEEEEEecCCCCcccccccccccCCC---CcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeec
Q psy12802 145 A-GVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPV---PPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDY 216 (1637)
Q Consensus 145 ~-~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~---~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~ 216 (1637)
+ .+++++.||.|++||+.+. +....+.+|.. .|.+++|+|+ .+++++.||.|++|| .+++.+..+..
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 247 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPF-----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTB-----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred CcEEEEEeCCCcEEEEeCCCc-----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence 8 7999999999999998763 67778888999 9999999875 799999999999999 88888888832
Q ss_pred cCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEE
Q psy12802 217 TAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 295 (1637)
Q Consensus 217 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i 295 (1637)
... .|...|.+++|+ +++.+++++.|+ |++||+............ .......+.++.|+ ++..+++++.||.|++
T Consensus 248 ~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 248 DQE-PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD-KQQLGNQQVGVVAT-GNGRIISLSLDGTLNF 323 (615)
T ss_dssp TTB-CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC-TTCGGGCEEEEEEE-ETTEEEEEETTSCEEE
T ss_pred ccc-ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcccCceeEEEeC-CCCeEEEEECCCCEEE
Confidence 000 266689999999 999999999999 999999865543211110 01123577888885 8999999999999999
Q ss_pred EEccccceeeeCc------EEEEE------ecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcE
Q psy12802 296 FESVLKRTIWKGK------FEMIY------VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTL 363 (1637)
Q Consensus 296 wd~~~~~~~~~~~------~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i 363 (1637)
||+.+++...... ..+.+ ..++.+.+.++. .+. ..+...|.++.|++++.+++++.++.+
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~------~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS------SMH--QDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT------EEE--CCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred EECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch------hhc--CcccCceEEEEECCCcEEEEEeCCCCE
Confidence 9997644322100 00000 000011111100 000 112224444444333333333444444
Q ss_pred EEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcc
Q psy12802 364 LLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLY 443 (1637)
Q Consensus 364 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~ 443 (1637)
.+||+.+++... ...++.++|++..++....+. +++|...... ......+..
T Consensus 396 ~~~~~~~~~~~~----------------~~~~~~~s~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~~~ 447 (615)
T 1pgu_A 396 KVNGITKHEFGS----------------QPKVASANNDGFTAVLTNDDD------LLILQSFTGD------IIKSVRLNS 447 (615)
T ss_dssp EETTEEEEECSS----------------CEEEEEECSSSEEEEEETTSE------EEEEETTTCC------EEEEEECSS
T ss_pred EEEEcccCcccC----------------CceEEEEcCCCCEEEEeCCCc------eEEEeccCCc------eeeecccCC
Confidence 444443322211 122344444333333321111 1122211110 001112344
Q ss_pred eeeeeeeccCCCeEEeecc-CCcEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEe
Q psy12802 444 TISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM 522 (1637)
Q Consensus 444 ~I~~l~~s~dg~~la~g~~-dg~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~ 522 (1637)
.+++++|+ +++|++++. ||.|++||.....
T Consensus 448 ~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~----------------------------------------------- 478 (615)
T 1pgu_A 448 PGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE----------------------------------------------- 478 (615)
T ss_dssp CEEEEEEC--SSEEEEEETTTSCEEEEETTEEE-----------------------------------------------
T ss_pred CceEEEEc--CCEEEEeecCCCeEEEEECCCcc-----------------------------------------------
Confidence 45555555 555555555 5555555542110
Q ss_pred cCcceEeeccccccccCcccccccccccccccccCCCceEEEeeccceEEEEEccCCcceEEe-c-ccCCccEEEeCc--
Q psy12802 523 GNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLLDLHTICVIDLITNLPTLHI-N-HDSKIDWLELNE-- 598 (1637)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~la~~~~~~~i~v~dl~~~~~~~~~-~-~~~~i~~l~~s~-- 598 (1637)
.....+.........+. |+||++++++++.++.|++||+.+++.+..+ . |...|.++.|+|
T Consensus 479 --------------~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 479 --------------VSFDLKTPLRAKPSYIS-ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp --------------EEEECSSCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred --------------ccccccCCccCceEEEE-ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcc
Confidence 00000011111222344 8999999999999999999999999998877 3 999999999999
Q ss_pred --------CcceeEeecccceEEEEecccc-ceeeec----ccceEEEEecCCceeEeccccceeEEE
Q psy12802 599 --------TAHKLLYRDKKMRLTLLDIRTS-EKHNIL----NYCTFVQWLPGSDVVVAQSRHNACVWY 653 (1637)
Q Consensus 599 --------~g~~L~~~~~~~~~~l~d~~t~-~~~~l~----~~~~~v~w~~~~~~l~~~~~~~l~v~~ 653 (1637)
++++|++++.++.+++||+.++ +..... ..+..+.|+|++.++.+..++.+.+|-
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCCeEEecCCceEEEEe
Confidence 9999999999999999999987 444433 358889999999844446677788764
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.9e-42 Score=482.74 Aligned_cols=532 Identities=11% Similarity=0.100 Sum_probs=399.6
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
.|...|++++|||||++|++|+.||+|++||+.++ ..+....+|...|++++|+|+|+ +++++.|++|++||+.+
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG----EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 48899999999999999999999999999999885 45556668999999999999999 99999999999999999
Q ss_pred Cce-eeecccCCcEEEEEEec--CCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEec
Q psy12802 123 NKT-QTLYASNSFVVALCLNV--RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGS 197 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~--~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~ 197 (1637)
++. ..+.+|...|.+++|+| ++..+++|+.||.|++||+.+. .+...+.+|..+|.+++|+|+ .+++++.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-----ECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-----SEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-----chhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 998 88899999999999999 5567999999999999999874 677888899999999999984 8999999
Q ss_pred CCeEEEEe-CCCceeEEeeccCC--------CCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCC
Q psy12802 198 DRIVTIYE-SDGRVHRIFDYTAP--------HYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN 268 (1637)
Q Consensus 198 d~~i~iwd-~~~~~~~~~~~~~~--------~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~ 268 (1637)
||.|++|| .+++....+..... ......+.+++|+|+|+.+++++.+.+.+|+........ .....|
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~----~~~~~~ 839 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA----EIHTGH 839 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE----EEECSS
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee----EEcCCC
Confidence 99999999 77777766653211 012346889999999999999997669999988765431 222356
Q ss_pred CcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEE
Q psy12802 269 LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAI 348 (1637)
Q Consensus 269 ~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~ 348 (1637)
...|.+++|+|+++.+++++.||.|++||+.++.... ....+...|+++.|
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~-----------------------------~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA-----------------------------DCRGHLSWVHGVMF 890 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE-----------------------------EECCCSSCEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee-----------------------------ecCCCccceEEEEE
Confidence 7899999999999999999999999999997553221 11122347999999
Q ss_pred ecCceEEEE-eCCCcEEEeeccccceee----------------------------eecCCCCCCceeEecCceEEEEEe
Q psy12802 349 MGNDRYLVA-RTPDTLLLGDLHRNLLSE----------------------------VLWPDSGRNEKFYFDNVTVCLVFN 399 (1637)
Q Consensus 349 s~~~~~lv~-~~~~~i~i~d~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1637)
+|++.++++ +.++++++||+.+..... ..+....+........++.++.|+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 999876666 789999999975421100 001111111222335567889999
Q ss_pred CCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhhhhhc
Q psy12802 400 AGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 479 (1637)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~~~~ 479 (1637)
|++..++.++.++.+ ++|+....... ....+|.+.|++++|+|||++|++++.||.|++||........
T Consensus 971 p~g~~l~~g~~~g~i-----~i~d~~~~~~~-----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~- 1039 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAI-----KIIELPNNRVF-----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF- 1039 (1249)
T ss_dssp TTSSEEEEEETTSCC-----EEEETTTTSCE-----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-
T ss_pred CCCCEEEEEcCCCCE-----EEEEcCCCcee-----eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-
Confidence 987778777666544 55555443111 1223688999999999999999999999999999975432110
Q ss_pred CceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeeccc--------cccccCcccccccccccc
Q psy12802 480 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTL--------LTEFMNPHLISVRLNERK 551 (1637)
Q Consensus 480 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~ 551 (1637)
+. .+...+..+.+++++.++..... .+......+.........
T Consensus 1040 -----------------~~------------~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A 1040 -----------------LQ------------AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1090 (1249)
T ss_dssp -----------------CB------------CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCC
T ss_pred -----------------Ee------------cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEE
Confidence 00 11122333333333332222211 110000111112222334
Q ss_pred cccccCCCceEEEeeccceEEEEEccCCcceEEe-cccCCccEEEeCcCcceeEeecccceEEEEeccccceeee-----
Q psy12802 552 QVHSQQENKKLAYLLDLHTICVIDLITNLPTLHI-NHDSKIDWLELNETAHKLLYRDKKMRLTLLDIRTSEKHNI----- 625 (1637)
Q Consensus 552 ~~~~s~d~~~la~~~~~~~i~v~dl~~~~~~~~~-~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d~~t~~~~~l----- 625 (1637)
+. |+||++++++++.+++|++||+.++.++..+ .|...|.++.|||+|++|++++.++.+++||+.+++....
T Consensus 1091 ~~-~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~ 1169 (1249)
T 3sfz_A 1091 CA-ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1169 (1249)
T ss_dssp EE-ECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC
T ss_pred EE-ECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccc
Confidence 55 9999999999999999999999999988877 7899999999999999999999999999999998775432
Q ss_pred --------cccceEEEEecCCceeEeccccceeEEEecCCCCc
Q psy12802 626 --------LNYCTFVQWLPGSDVVVAQSRHNACVWYNIDTPDR 660 (1637)
Q Consensus 626 --------~~~~~~v~w~~~~~~l~~~~~~~l~v~~~~~~~~~ 660 (1637)
...++.+.|+|++..+++.+ +.+.+| ++.+...
T Consensus 1170 ~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vw-d~~~g~~ 1210 (1249)
T 3sfz_A 1170 VEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWW-NVATGDS 1210 (1249)
T ss_dssp -------CCSCCCEEEECTTSSCEEEES-SSEEEB-CSSSCBC
T ss_pred ccccccccCceEEEEEECCCCCEEEECC-CeEEEE-ECCCCce
Confidence 23478899999999888775 677775 4444443
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-40 Score=429.44 Aligned_cols=494 Identities=11% Similarity=0.074 Sum_probs=379.9
Q ss_pred cCCCCCc-eeEEEEcC--CCCEEEEEeCCCeEEEEEcCCC---------------CcccceEEEEECCCCCeEEEEECC-
Q psy12802 7 TDVSSNV-LQDDVFNL--DIVRLRSEGNVAGIWAWRGQNG---------------RKSYVVKGLAFSPDSTKLAVAQSD- 67 (1637)
Q Consensus 7 ~~~~~~~-i~~~~~sp--dg~~la~~~~d~~i~vwd~~~~---------------~h~~~V~~~~~spd~~~la~~~~d- 67 (1637)
...|... |++++|+| ||++|++++.|+.|++||+.++ .|...|.+++|+|++++|++++.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 138 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 138 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC
Confidence 3457788 99999999 9999999999999999999654 168899999999999999999987
Q ss_pred ---CeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce-eeecccCC---cEEEE
Q psy12802 68 ---NIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT-QTLYASNS---FVVAL 138 (1637)
Q Consensus 68 ---~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~-~~~~~~~~---~v~~l 138 (1637)
+.|.+||.. +.+....+|...|++++|+|+++ +++++.|+.|++||+.+++. ..+.+|.. .|.++
T Consensus 139 ~~~~~v~~~d~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 139 DNFGVFISWDSG------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 212 (615)
T ss_dssp SCSEEEEETTTC------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred CCccEEEEEECC------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE
Confidence 688888832 34556678999999999999997 88899999999999999988 78888998 99999
Q ss_pred EEecC-CCeEEEEeCCCcEEEEEecCCCCccccccccc-c---cCCCCcEEEEec-CCeEEEEecCCeEEEEe-CCCcee
Q psy12802 139 CLNVR-GAGVLSGHADGSIVRYYVTEDASNFDQQQGRV-V---QHPVPPYALSWP-AGYILAAGSDRIVTIYE-SDGRVH 211 (1637)
Q Consensus 139 ~~s~~-g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~-~---~~~~~v~~~~~~-~~~l~~~~~d~~i~iwd-~~~~~~ 211 (1637)
+|+|+ |+.|++++.||.|++||+.+. +.+..+ . .|..+|.++.|+ +..+++++.|+.|++|| .+++.+
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGKSG-----EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTC-----CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCC-----CEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 99999 999999999999999999873 566666 5 899999999996 34899999999999999 778888
Q ss_pred EEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecC
Q psy12802 212 RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 290 (1637)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d 290 (1637)
..+..+.. .....+.++.|+ ++..+++++.++ |++|++...... .....|...|.+++| |+ +++++.|
T Consensus 288 ~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~-~~---l~~~~~d 356 (615)
T 1pgu_A 288 QKWTLDKQ-QLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL-----KTISGHNKGITALTV-NP---LISGSYD 356 (615)
T ss_dssp EEEECCTT-CGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE-----EEECCCSSCEEEEET-TT---TEEEETT
T ss_pred EEEcCCCC-cccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE-----EEEeCCCCCEEEEEe-cC---cEEECCC
Confidence 88886532 345678888886 999999999999 999998764432 233457789999999 88 9999999
Q ss_pred CcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccC-------------ceeeEEEEecCceEEEE
Q psy12802 291 GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG-------------YEITDVAIMGNDRYLVA 357 (1637)
Q Consensus 291 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~i~~v~~s~~~~~lv~ 357 (1637)
|.|++|++. ... . .....+....+..+ ..+......+ ..+..++++|++.++++
T Consensus 357 g~i~~w~~~--~~~-~-------~~~~~v~~~~~~~~---~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 357 GRIMEWSSS--SMH-Q-------DHSNLIVSLDNSKA---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423 (615)
T ss_dssp SCEEETTTT--EEE-C-------CCCSCEEEEECCST---TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred CeEEEEEch--hhc-C-------cccCceEEEEECCC---cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEE
Confidence 999999985 111 1 00111111111111 1111111111 14678999999999999
Q ss_pred eCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecC-CceeeeeeeeeeccCCCCcccccCCC
Q psy12802 358 RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGN-NEILTCVSIKLFAWSPSKSVWEEQPN 436 (1637)
Q Consensus 358 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~i~~~~~~~~~~~w~~~~~ 436 (1637)
+.++.+.+|++.+++.... +....++.++.|+ +..++..+. ++.+ ++|+....... ..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~l~~~~~~d~~i-----~~~~~~~~~~~----~~ 482 (615)
T 1pgu_A 424 TNDDDLLILQSFTGDIIKS----------VRLNSPGSAVSLS--QNYVAVGLEEGNTI-----QVFKLSDLEVS----FD 482 (615)
T ss_dssp ETTSEEEEEETTTCCEEEE----------EECSSCEEEEEEC--SSEEEEEETTTSCE-----EEEETTEEEEE----EE
T ss_pred eCCCceEEEeccCCceeee----------cccCCCceEEEEc--CCEEEEeecCCCeE-----EEEECCCcccc----cc
Confidence 9999999999866554322 1234567788888 445555554 5433 55555443110 02
Q ss_pred ccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceee
Q psy12802 437 KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEI 516 (1637)
Q Consensus 437 ~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~ 516 (1637)
....|...|++++|||||++|++|+.||.|++||....+ .+..+.+. +.
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~-----------h~--- 531 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----------------VKTSRWAF-----------RT--- 531 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------EEECCSCC-----------CS---
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----------------ceeEeecC-----------CC---
Confidence 334688899999999999999999999999999975322 11111110 00
Q ss_pred eeEEEecCcceEeeccccccccCcccccccccccccccccC----------CCceEEEeeccceEEEEEccCC-cceEEe
Q psy12802 517 TDVAIMGNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQ----------ENKKLAYLLDLHTICVIDLITN-LPTLHI 585 (1637)
Q Consensus 517 ~~i~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------d~~~la~~~~~~~i~v~dl~~~-~~~~~~ 585 (1637)
..+. .+. |+| +++++++++.|++|++||+.++ ..+..+
T Consensus 532 -----------------------~~v~-------~~~-~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 532 -----------------------SKIN-------AIS-WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp -----------------------SCEE-------EEE-ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred -----------------------Ccee-------EEE-EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 1111 223 777 9999999999999999999988 677766
Q ss_pred -cccCCccEEEeCcCcceeEeecccceEEEEeccc
Q psy12802 586 -NHDSKIDWLELNETAHKLLYRDKKMRLTLLDIRT 619 (1637)
Q Consensus 586 -~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d~~t 619 (1637)
.|...|.++.|+|+++ |++++.++.+++||+.+
T Consensus 581 ~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 581 NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 7999999999999999 99999999999999875
No 11
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=423.51 Aligned_cols=588 Identities=12% Similarity=0.068 Sum_probs=379.5
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCc
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDK 82 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~ 82 (1637)
.|...|++++|||||++||+|+.||+|++|+..+++ |...|++++|+| |++|++++.|++|++||+.++
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~---- 89 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ---- 89 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC----
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC----
Confidence 477899999999999999999999999999987653 677999999999 889999999999999999875
Q ss_pred eeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCcee------------eecccCCcEEEEEEecC-CCeEE
Q psy12802 83 KVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQ------------TLYASNSFVVALCLNVR-GAGVL 148 (1637)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~------------~~~~~~~~v~~l~~s~~-g~~l~ 148 (1637)
+.+... .|...|++++|+|+++ +++|+.||+|++||+++++.. .+.+|.+.|.+++|+|+ +..++
T Consensus 90 ~~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 233332 3678999999999999 999999999999999988752 23578899999999996 57899
Q ss_pred EEeCCCcEEEEEecCCCCccccccccccc------------------CCCCcEEEEecCC--eEEEEecCCeEEEEe-CC
Q psy12802 149 SGHADGSIVRYYVTEDASNFDQQQGRVVQ------------------HPVPPYALSWPAG--YILAAGSDRIVTIYE-SD 207 (1637)
Q Consensus 149 s~~~dg~i~iwd~~~~~~g~~~~~~~~~~------------------~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~ 207 (1637)
+|+.||.| +||+++. .+...+.. |...|.+++|+|+ .|++++.||+|++|| .+
T Consensus 169 ~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred EEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 99999999 9999874 44444443 3578999999984 899999999999999 77
Q ss_pred CceeEEeec-----cCC-----C---CCCccEEEEEEC----CCC-CEEEEEecC------cEEEEEeCCCCC----ccc
Q psy12802 208 GRVHRIFDY-----TAP-----H---YKEREFTVACSS----PSG-QAVVVGSYD------NIKLFAWSPSKS----VWE 259 (1637)
Q Consensus 208 ~~~~~~~~~-----~~~-----~---~~~~~i~~~~~s----p~g-~~l~~~~~d------~i~i~~~~~~~~----~~~ 259 (1637)
++++..... +.. . .+...|.+++|+ |++ ..+++|+.+ .+.+|++..... .|+
T Consensus 243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 887754221 110 0 124479999995 554 567777665 377887531100 000
Q ss_pred ----------cCCCcccCCCcceeEEEEcC----------CCCEEEEEecCCcEEEEEccccceeee-------------
Q psy12802 260 ----------EQPNKTIPNLYTISALSWKR----------DGSRIACGGLCGSVELFESVLKRTIWK------------- 306 (1637)
Q Consensus 260 ----------~~~~~~~~~~~~i~~l~~sp----------dg~~l~~~~~dg~v~iwd~~~~~~~~~------------- 306 (1637)
........+...|..+.+.| ++..+++++.||.|++||+.++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 00001112334566666644 233566777777777777654422110
Q ss_pred --------------------------------------------CcEEEEEecCCeEEEecCCCCCCCc--eeEEe----
Q psy12802 307 --------------------------------------------GKFEMIYVSPSQVLVKPLSGESKGR--GVILK---- 336 (1637)
Q Consensus 307 --------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~---- 336 (1637)
+.+.++-..++.+.++++..+.... .+...
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 1122222333444455554431100 01111
Q ss_pred --cccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceee-----------eec-------CCCC-------------
Q psy12802 337 --SQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSE-----------VLW-------PDSG------------- 382 (1637)
Q Consensus 337 --~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~-----------~~~-------~~~~------------- 382 (1637)
..+...|++++|+|+++++++ +.|++|+|||+.+++... +.+ .+..
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 033457999999999888777 789999999998763200 000 0000
Q ss_pred -CCcee----EecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCcc-CCCcceeeeeeec-----
Q psy12802 383 -RNEKF----YFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWK----- 451 (1637)
Q Consensus 383 -~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~-~~~~~~I~~l~~s----- 451 (1637)
+..+. ...+++++++|+|++ .|+.++.+..+ ++|+......++....... .+|.+.|++++||
T Consensus 563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv-----~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL-----MLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG 636 (902)
T ss_dssp EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE-----EEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE-----EEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC
Confidence 00001 135678899999988 88888887655 5666543321111011112 2788899999999
Q ss_pred cCC---CeEEeeccCCcEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEE-EecCcce
Q psy12802 452 RDG---SRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA-IMGNDRY 527 (1637)
Q Consensus 452 ~dg---~~la~g~~dg~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~-i~~~~~~ 527 (1637)
||| ++|++|+.||+|++||..... .+.+... +.++. .......+..+. |..+...
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~---~g~~~~~-----------~~~~~-------~~~~~~~v~~i~~~~~~~~~ 695 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPAS---GGKFDVQ-----------LMDIT-------NVTSKGPIHKIDAFSKETKS 695 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECG---GGCEEEE-----------EEEEE-------ECCSSCCCCEEEEEETTTCC
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCC---CCcEEEE-----------ecCce-------ecCCCCceEEEEeEecCCCC
Confidence 886 899999999999999972111 1111111 11100 000011222222 2211111
Q ss_pred EeeccccccccCcccccccccccccccccCCCceEEEeeccceEEEEEccCCcceEEe-cccCCccEE---E------eC
Q psy12802 528 LVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLLDLHTICVIDLITNLPTLHI-NHDSKIDWL---E------LN 597 (1637)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~la~~~~~~~i~v~dl~~~~~~~~~-~~~~~i~~l---~------~s 597 (1637)
....+ ...+. ...-. ..+++..|+++ +..|++|++.+++++... .|...+..+ . ++
T Consensus 696 ~~~a~---------~~~~~--~l~~~-~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~ 761 (902)
T 2oaj_A 696 SCLAT---------IPKMQ--NLSKG-LCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDR 761 (902)
T ss_dssp BCBCB---------HHHHH--GGGGT-CCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCE
T ss_pred cccCC---------HHHHh--ccCCC-CCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccc
Confidence 10000 00000 00111 44677766665 678999999999887655 665555555 5 68
Q ss_pred cCcceeEeecccceEEEEeccccceeeecc--------cceEEEEecCCceeEeccccce
Q psy12802 598 ETAHKLLYRDKKMRLTLLDIRTSEKHNILN--------YCTFVQWLPGSDVVVAQSRHNA 649 (1637)
Q Consensus 598 ~~g~~L~~~~~~~~~~l~d~~t~~~~~l~~--------~~~~v~w~~~~~~l~~~~~~~l 649 (1637)
++|..|++.+.++.+.+|++.+.+.+.... +.....+.++++++...+...+
T Consensus 762 ~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~ 821 (902)
T 2oaj_A 762 KNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQA 821 (902)
T ss_dssp EEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECSSSEE
T ss_pred cCceEEEEEeCCCcEEEEECcchHHHhhccCCcccccccccceEEcCCCCEEEEeChhhe
Confidence 899999999999999999999987755332 2233556677776666555444
No 12
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=418.73 Aligned_cols=534 Identities=11% Similarity=0.083 Sum_probs=339.3
Q ss_pred EcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEE
Q psy12802 39 RGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKA 117 (1637)
Q Consensus 39 d~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~v 117 (1637)
+....+|...|++++|+|++++||+|+.||+|+||+..+. ... ....|..+|.+++|+| |+ +++++.|++|++
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~----~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV----EVV-IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC----EEE-EECSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc----EEE-EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence 3334468899999999999999999999999999998763 222 2345788999999999 88 999999999999
Q ss_pred EEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccc-----------cccccCCCCcEEE
Q psy12802 118 AHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ-----------GRVVQHPVPPYAL 185 (1637)
Q Consensus 118 wd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~-----------~~~~~~~~~v~~~ 185 (1637)
||+.+++. ..+ .|...|.+++|+|+++++++|+.||+|++||+.+. ... ..+.+|.++|.++
T Consensus 84 Wd~~~~~~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-----~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 84 LSLYSQKVLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-----QLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EETTTCSEEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-----EEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred EECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-----ccccceeccccccccccccCCCCeEEE
Confidence 99999988 444 47789999999999999999999999999999863 221 3456799999999
Q ss_pred EecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCC-------------CCCCccEEEEEECCCCCEEEEEecCc-EE
Q psy12802 186 SWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAP-------------HYKEREFTVACSSPSGQAVVVGSYDN-IK 247 (1637)
Q Consensus 186 ~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~-------------~~~~~~i~~~~~sp~g~~l~~~~~d~-i~ 247 (1637)
+|+|+ .+++|+.||.| +|| .+++++..+..+.. ..|...|.+++|+|+|++|++++.|+ |+
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV 236 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE
Confidence 99983 78899999999 999 77888887765410 02346799999999999999999999 99
Q ss_pred EEEeCCCCCccccCCC----c---------ccCCCcceeEEEEc----CCC-CEEEEEecC-----CcEEEEEcccccee
Q psy12802 248 LFAWSPSKSVWEEQPN----K---------TIPNLYTISALSWK----RDG-SRIACGGLC-----GSVELFESVLKRTI 304 (1637)
Q Consensus 248 i~~~~~~~~~~~~~~~----~---------~~~~~~~i~~l~~s----pdg-~~l~~~~~d-----g~v~iwd~~~~~~~ 304 (1637)
+||...++........ . .+.+...|.+++|+ ||+ ..|++|+.+ +.+.+|++......
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~ 316 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRY 316 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCG
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCc
Confidence 9999876542110000 0 00234579999995 554 457777665 37888885210000
Q ss_pred eeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEec----------Cc-eEEEEeCCCcEEEeeccccce
Q psy12802 305 WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG----------ND-RYLVARTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~----------~~-~~lv~~~~~~i~i~d~~~~~~ 373 (1637)
..+ .......-+.... ....+....+..|.++.+.| +. .+++.+.++.+++||+.++..
T Consensus 317 ~~~--------s~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 317 SIT--------SYEGMKNYYANPK--QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp GGC--------CHHHHHHHHHSCS--EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred ccc--------chhhhhhhhcCcc--ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 000 0000000000000 01111112234667777655 12 355568899999999866532
Q ss_pred eee----ecCCCCCCce---eEe-------------------------cCceEEEEEeCCccEEEEecCCceeeeeeeee
Q psy12802 374 SEV----LWPDSGRNEK---FYF-------------------------DNVTVCLVFNAGELSIIEYGNNEILTCVSIKL 421 (1637)
Q Consensus 374 ~~~----~~~~~~~~~~---~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 421 (1637)
... ......+... +.| ......++|+|+...+++++.|+.+ ++
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV-----rl 461 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV-----RI 461 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE-----EE
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE-----EE
Confidence 211 0000000000 000 0112234567777778888777654 77
Q ss_pred eccCCCCcccccCCCc----------cCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhhhhhcCceeEEEecCCc
Q psy12802 422 FAWSPSKSVWEEQPNK----------TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQ 491 (1637)
Q Consensus 422 ~~~~~~~~~w~~~~~~----------~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~~~~~~~~~~~~~~~~~ 491 (1637)
|+..... ..... ..+|...|++++|||||+.||+|+.||+|+||+....+.......... ....
T Consensus 462 Wd~~~g~----~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~--~~~~ 535 (902)
T 2oaj_A 462 YDASHGD----IQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPES--GDLE 535 (902)
T ss_dssp EESSCCT----TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred EECCCcc----ccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCC--cccc
Confidence 7765441 11000 016778999999999999999999999999999754321000000000 0000
Q ss_pred eEEe--eccCCCCCceeEEeeccceeeeeEEEecCcceEeeccccccccCcccccccccccccccccCCCceEEEeeccc
Q psy12802 492 VLVK--PLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLLDLH 569 (1637)
Q Consensus 492 ~~v~--~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~la~~~~~~ 569 (1637)
+.+. ++.... +....+.......+ ..+ +.. + ..+....-....++ ||||| +||+++.|+
T Consensus 536 ~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~g-~~~--------~-~~l~~h~~~V~sva-fSpdG-~lAsgs~D~ 596 (902)
T 2oaj_A 536 MNFRRFSLNNTN-GVLVDVRDRAPTGV------RQG-FMP--------S-TAVHANKGKTSAIN-NSNIG-FVGIAYAAG 596 (902)
T ss_dssp --CCSCCGGGSS-CSEEECGGGCCTTC------SEE-EEE--------E-EEECCCSCSEEEEE-ECBTS-EEEEEETTS
T ss_pred eeeeeccccCCc-cccccccccCCCCC------CCc-cce--------e-EEEEcCCCcEEEEE-ecCCc-EEEEEeCCC
Confidence 0000 000000 00000000000000 000 000 0 00111122223445 99999 999999999
Q ss_pred eEEEEEccCCcceE--Ee-----cccCCccEEEeC-----cCc---ceeEeecccceEEEEec---cccceeee
Q psy12802 570 TICVIDLITNLPTL--HI-----NHDSKIDWLELN-----ETA---HKLLYRDKKMRLTLLDI---RTSEKHNI 625 (1637)
Q Consensus 570 ~i~v~dl~~~~~~~--~~-----~~~~~i~~l~~s-----~~g---~~L~~~~~~~~~~l~d~---~t~~~~~l 625 (1637)
+|++||+.++..+. .+ +|...|.+++|| ||| .+|++++.|+.+++||+ .+|+....
T Consensus 597 tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 597 SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 99999998776553 22 678889999999 885 89999999999999999 77765443
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=100.00 E-value=3.4e-34 Score=361.26 Aligned_cols=622 Identities=14% Similarity=0.129 Sum_probs=448.5
Q ss_pred CCchHHHHHHHHHHhcCHHHH------------HHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHH
Q psy12802 783 PLQCPELWARMAILNKQFKVA------------EGIYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKW 850 (1637)
Q Consensus 783 ~~~~~~~~a~~a~~~~~~~~A------------~~~~~~~~~~~~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~ 850 (1637)
.+..+..+|.+++..++-.+. ..-|++-.++..|.-.|.+-..-++-+.+..+ ..+.+..+++
T Consensus 872 ~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~-----n~l~k~~ary 946 (1630)
T 1xi4_A 872 EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE-----NSLFKSLSRY 946 (1630)
T ss_pred CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhc-----chhHHHHHHH
Confidence 445677788888875543333 55667777777787788876666676666666 5677788899
Q ss_pred HHhcccHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCH-
Q psy12802 851 LTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNEN- 929 (1637)
Q Consensus 851 l~~~~~~~~A~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~- 929 (1637)
|.+..+.+..+.++.+...+..- .-++..|..|... .+++-+...+..+...|.+.+|.++|++.--.
T Consensus 947 lv~r~d~~lW~~vl~~~n~~RR~------Lidqv~a~aL~e~-----~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~ 1015 (1630)
T 1xi4_A 947 LVRRKDPELWGSVLLESNPYRRP------LIDQVVQTALSET-----QDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1015 (1630)
T ss_pred HHHhcCHHHHHHHhcCCcHHHHH------HHHHHHHhhcccc-----cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 99999999999998776643322 2222333333332 56777888888899999999999999986411
Q ss_pred ---------HH-HHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHH-Hcc
Q psy12802 930 ---------EK-ALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSI-KAK 998 (1637)
Q Consensus 930 ---------~~-a~~~y~~~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~-~~~ 998 (1637)
+. .+.+..+. +..+.++++.+...- +...+|..+.+.|+|++|..+|++++.+..|+..+. ..+
T Consensus 1016 s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~ 1090 (1630)
T 1xi4_A 1016 SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----DAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIG 1090 (1630)
T ss_pred CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----cHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 23333333 556666666664422 235799999999999999999999999999988888 899
Q ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHH
Q psy12802 999 QWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKAT 1078 (1637)
Q Consensus 999 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 1078 (1637)
+|++|.++++++..+. +|.++|.++...|++++|++.|+++++.+ .
T Consensus 1091 nldrAiE~Aervn~p~----vWsqLAKAql~~G~~kEAIdsYiKAdD~s------------------------------a 1136 (1630)
T 1xi4_A 1091 NLDRAYEFAERCNEPA----VWSQLAKAQLQKGMVKEAIDSYIKADDPS------------------------------S 1136 (1630)
T ss_pred hHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCHHHHHHHHHhcCChH------------------------------H
Confidence 9999999999886554 89999999999999999999999986543 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCchH-------HHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHH
Q psy12802 1079 FIQKCKQLEEENKFKEAERLYLIIGEPDL-------AISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYK 1151 (1637)
Q Consensus 1079 ~~~~a~~~~~~g~~~~A~~~y~~~~~~~~-------ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1151 (1637)
|..+|..+.+.|+|++|+++|.++.+... -...|.+.+++++...++.. .. ...+..+|..|+++|+|+
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~---~n-~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PN-NAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhC---CC-HHHHHHHHHHHHhcCCHH
Confidence 33344444444555555555444332220 11224444555544444421 12 345678999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH----HhccHHHHHHHHHh
Q psy12802 1152 QAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN----RLSLLESCISNACD 1227 (1637)
Q Consensus 1152 ~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~i~~~~~ 1227 (1637)
+|..+|.++++|.+++.+|++.|++++|++.+++..+..+|++++.++...|+++.|..... ..+.++.++.+|.+
T Consensus 1213 eA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1213 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999977664 35678899999999
Q ss_pred cCChHHHHHHHHhcC--CCCc---------------HHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHH
Q psy12802 1228 TYQFDFAFELAKIGM--KSKL---------------EEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWE 1290 (1637)
Q Consensus 1228 ~~~~~~a~~l~~~~~--~~~~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~ 1290 (1637)
.|.|++|+.+++.+. .+.. |+-.......|+++++.++.++.+.++..|.+++.+|.+.++|+
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 999999999998663 2222 23333455566666677777777777777999999999999999
Q ss_pred HHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHH
Q psy12802 1291 NAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYE 1370 (1637)
Q Consensus 1291 ~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~ 1370 (1637)
.|..++.+|.+. .++++.|++.+.......-+.+|+.+| -+..|..+.+|
T Consensus 1373 nA~~tm~~h~~~------------a~~~~~Fk~~i~kv~n~elyykai~Fy-------------l~~~P~~lndL----- 1422 (1630)
T 1xi4_A 1373 NAIITMMNHPTD------------AWKEGQFKDIITKVANVELYYRAIQFY-------------LEFKPLLLNDL----- 1422 (1630)
T ss_pred HHHHHHHhccHh------------hhhhHHHHHHhcccccHHHHHHHHHHH-------------HhhChHHHHHH-----
Confidence 999999998766 677778877554433333445666666 45555555544
Q ss_pred HHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch--hHHHHHHHHHHHHHHhccCccchhhhhhhhhhhhhh
Q psy12802 1371 KEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV--NLMVKILNEVTQLTLKYLNHDQSYKILPSLVPKLME 1448 (1637)
Q Consensus 1371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 1448 (1637)
+..+. ..=|+.+++..|.+....+. +++..+..+ ....+-..+...|.+
T Consensus 1423 -------------l~~l~----~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~------------n~~~Vneal~el~ie 1473 (1630)
T 1xi4_A 1423 -------------LMVLS----PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH------------NNKSVNESLNNLFIT 1473 (1630)
T ss_pred -------------HHHhh----hcCChHHHHHHHHHcCChHHhHHHHHHHHHh------------cchhhhHHHHHHhcC
Confidence 33333 33488999999998876544 233222211 112344556666666
Q ss_pred ccCHH---HHHHHHhcccchHHHHHHHHhccchHHHHHHHHhhCcchHHHHHHHHHHHHHhcCCCccccccCHHHHHHHH
Q psy12802 1449 FKQYD---LAVRVYLNIDMVKEAVDIFIYTQNWNKARKLCAELKPEYLSYVENQYKEWLKKNGDADMLSEIDINTALDML 1525 (1637)
Q Consensus 1449 ~~~~~---~A~~~y~~~~~~~~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~a~~~~ 1525 (1637)
-.+|+ ..++.|.+.++ ..+|+++..+...++++..+..+++.|+ +.+|+++|
T Consensus 1474 eed~~~Lr~si~~~~nfd~-----------------~~La~~lekheLl~frrIAa~ly~~n~~--------~~~ai~l~ 1528 (1630)
T 1xi4_A 1474 EEDYQALRTSIDAYDNFDN-----------------ISLAQRLEKHELIEFRRIAAYLFKGNNR--------WKQSVELC 1528 (1630)
T ss_pred ccchHHHHHHHhhccCcCH-----------------HHHHHHhhhhhHHHHHHHHHHHHHhcCc--------HHHHHHHH
Confidence 66665 45555555554 6778888888777777766666666675 99999999
Q ss_pred HHcccHHHHHHHHHhhChhhHH
Q psy12802 1526 MKQGQWNQCLDKAKNINTNLLH 1547 (1637)
Q Consensus 1526 ~~~~~~~~a~~~a~~~~~~~~~ 1547 (1637)
.+.|.|.+|+++|.+.+...+.
T Consensus 1529 k~d~l~~dAm~~a~~S~d~e~~ 1550 (1630)
T 1xi4_A 1529 KKDSLYKDAMQYASESKDTELA 1550 (1630)
T ss_pred HhccCHHHHHHHHHHcCCHHHH
Confidence 9999999999999999876433
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-35 Score=350.22 Aligned_cols=278 Identities=17% Similarity=0.158 Sum_probs=247.0
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC
Q psy12802 7 TDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW 79 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~ 79 (1637)
...|...|++++|+|||++|++++.|++|++||..++. |...|.+++|+|++++|++|+.|+.|++|++.+..
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 45688999999999999999999999999999998765 67889999999999999999999999999998754
Q ss_pred CCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEE
Q psy12802 80 GDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVR 158 (1637)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~i 158 (1637)
...+......+|.+.|.++.|+|++.+++++.|++|++||+.+++. ..+.+|...|.+++|+|+++.+++|+.||+|++
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 4445555667899999999999988899999999999999999988 888899999999999999999999999999999
Q ss_pred EEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCC
Q psy12802 159 YYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG 235 (1637)
Q Consensus 159 wd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 235 (1637)
||+++. .+...+.+|...|.+++|+|+ .+++|+.||+|++|| ..++.+..+... .+...|++++|+|+|
T Consensus 211 wd~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~g 282 (340)
T 1got_B 211 WDVREG-----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---NIICGITSVSFSKSG 282 (340)
T ss_dssp EETTTC-----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---TCCSCEEEEEECTTS
T ss_pred EECCCC-----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC---CcccceEEEEECCCC
Confidence 999873 677888899999999999984 899999999999999 677777666532 244579999999999
Q ss_pred CEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEE
Q psy12802 236 QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE 297 (1637)
Q Consensus 236 ~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd 297 (1637)
+++++|+.|+ |++||....... .....|...|.+++|+|+|.+|++|+.||+|++||
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCeEEEEEcccCcEe-----eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999 999998765542 23346788999999999999999999999999996
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-35 Score=361.52 Aligned_cols=272 Identities=15% Similarity=0.251 Sum_probs=247.0
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 8 ~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
..|...|++++|+|++.+|++|+.|++|++||..+++ |...|++++|+|++++|++|+.|++|++||+.+.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-- 182 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-- 182 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 3588899999999999999999999999999998765 7889999999999999999999999999999874
Q ss_pred CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEE
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVR 158 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~i 158 (1637)
..+....+|...|.+++|+|++. +++|+.|++|++||+.++.+ .++.+|...|.++.|+|+|..|++|+.||+|++
T Consensus 183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence 55666778999999999999999 99999999999999999988 888999999999999999999999999999999
Q ss_pred EEecCCCCcccccccccccCCCCcEEEEecCC----------------------eEEEEecCCeEEEEe-CCCceeEEee
Q psy12802 159 YYVTEDASNFDQQQGRVVQHPVPPYALSWPAG----------------------YILAAGSDRIVTIYE-SDGRVHRIFD 215 (1637)
Q Consensus 159 wd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~----------------------~l~~~~~d~~i~iwd-~~~~~~~~~~ 215 (1637)
||+.+. .+...+.+|...|.+++|+|+ .+++|+.|++|++|| .++.++..+.
T Consensus 261 wd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 261 WVVATK-----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp EETTTC-----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EECCCC-----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 999874 667788899999999999873 689999999999999 8888888887
Q ss_pred ccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEE
Q psy12802 216 YTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 294 (1637)
Q Consensus 216 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~ 294 (1637)
+|...|++++|+|+|++|++|+.|+ |++||+...... .....|...|++++|+|++.+|++|+.||+|+
T Consensus 336 -----~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 336 -----GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405 (410)
T ss_dssp -----CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC-----EEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred -----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 4666899999999999999999999 999999765542 23345778999999999999999999999999
Q ss_pred EEEc
Q psy12802 295 LFES 298 (1637)
Q Consensus 295 iwd~ 298 (1637)
+|++
T Consensus 406 vW~~ 409 (410)
T 1vyh_C 406 VWEC 409 (410)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=339.51 Aligned_cols=276 Identities=15% Similarity=0.224 Sum_probs=244.3
Q ss_pred eecCCCCCceeEEEEcCC----CCEEEEEeCCCeEEEEEcCCC---------CcccceEEEEECCCCCeEEEEECCCeEE
Q psy12802 5 KYTDVSSNVLQDDVFNLD----IVRLRSEGNVAGIWAWRGQNG---------RKSYVVKGLAFSPDSTKLAVAQSDNIIF 71 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spd----g~~la~~~~d~~i~vwd~~~~---------~h~~~V~~~~~spd~~~la~~~~d~~i~ 71 (1637)
+-...|...|.+++|+|+ +.+|++|+.|++|++|+...+ +|...|.+++|+|++..+++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 445679999999999985 679999999999999998643 3888999999999999999999999999
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEE
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLS 149 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s 149 (1637)
+||+.++ +.+.....|...+.+++|+|+++ +++++.||.|++|++++++. ..+..|...|.+++|+|+|++|++
T Consensus 106 lWd~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 106 LWDLENG----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEETTTT----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEECCCC----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 9999875 44555567888899999999999 99999999999999999987 778889999999999999999999
Q ss_pred EeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccE
Q psy12802 150 GHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREF 226 (1637)
Q Consensus 150 ~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i 226 (1637)
|+.||.|++||+.+. +.+..+.+|..+|.+++|+|+ .+++++.|++|++|| .+++....+. .|...|
T Consensus 182 g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~h~~~v 251 (321)
T 3ow8_A 182 GAIDGIINIFDIATG-----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-----GHASWV 251 (321)
T ss_dssp EETTSCEEEEETTTT-----EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-----CCSSCE
T ss_pred EcCCCeEEEEECCCC-----cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-----CCCCce
Confidence 999999999999873 677888999999999999984 899999999999999 7788888877 466789
Q ss_pred EEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 227 TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 227 ~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.+++|+|+|+.|++++.|+ |++||+...... .....|...|.+++|+|+|+.|++++.||+|++||+.
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV-----HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE-----EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999 999999876543 2334577899999999999999999999999999973
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.7e-35 Score=346.05 Aligned_cols=277 Identities=14% Similarity=0.136 Sum_probs=228.9
Q ss_pred CCCCceeEEEEcCCCCEEEEEeC------CCeEEEEEcCCCC-----------cccceEEEEECCCCCeEEEEECCCeEE
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGN------VAGIWAWRGQNGR-----------KSYVVKGLAFSPDSTKLAVAQSDNIIF 71 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~------d~~i~vwd~~~~~-----------h~~~V~~~~~spd~~~la~~~~d~~i~ 71 (1637)
.|...|++++|||||++|++++. |+.|++|+..++. |...|++++|+|++. +++++.||+|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 58889999999999999999997 6789999987553 677899999999985 55678899999
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCC-eEE
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGA-GVL 148 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~-~l~ 148 (1637)
|||+.++...........+|...|++++|+|+++ +++++.|++|++||+.+++. ..+.+|...|.+++|+|++. .++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 9999875322222233457999999999999999 99999999999999999988 88899999999999999885 689
Q ss_pred EEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCc
Q psy12802 149 SGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER 224 (1637)
Q Consensus 149 s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~ 224 (1637)
+++.||+|++||+++... ........|...+.+++|+|+ .+++|+.|+.|++|| .+++++..+. .+..
T Consensus 199 s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-----~~~~ 270 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-----VHSQ 270 (357)
T ss_dssp EEETTSCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-----CCSS
T ss_pred eeccCCceEEEECCCCce---eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-----ccce
Confidence 999999999999987532 222334567888999999983 688899999999999 8888888887 4666
Q ss_pred cEEEEEECCCC-CEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC-CCCEEEEEecCCcEEEEEccc
Q psy12802 225 EFTVACSSPSG-QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 225 ~i~~~~~sp~g-~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~dg~v~iwd~~~ 300 (1637)
.|++++|+|++ ++|++|+.|+ |+|||++.+.. .....|...|++++|+| |+.+|++++.||+|++|++.+
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~------~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEV------FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE------eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 89999999997 5789999999 99999876543 34457888999999999 799999999999999999853
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.4e-35 Score=342.42 Aligned_cols=276 Identities=14% Similarity=0.115 Sum_probs=226.6
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcC-------CC-----------CcccceEEEEECCCCCeEEEEECCCeE
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQ-------NG-----------RKSYVVKGLAFSPDSTKLAVAQSDNII 70 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~-------~~-----------~h~~~V~~~~~spd~~~la~~~~d~~i 70 (1637)
.+...|++++|||||++|++++ |+++++||.. .. ++...|.+++|+||+ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4567899999999999999887 6677777632 11 135679999999985 68899999999
Q ss_pred EEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCC-eE
Q psy12802 71 FIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGA-GV 147 (1637)
Q Consensus 71 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~-~l 147 (1637)
+|||+.++...........+|.+.|++++|+|+|+ +++|+.|++|++||+.++++ ..+.+|...|.+++|+|++. .|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 99999886333333344558999999999999999 99999999999999999998 88999999999999999985 68
Q ss_pred EEEeCCCcEEEEEecCCCCccccccccc--ccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCCC
Q psy12802 148 LSGHADGSIVRYYVTEDASNFDQQQGRV--VQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHY 221 (1637)
Q Consensus 148 ~s~~~dg~i~iwd~~~~~~g~~~~~~~~--~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~ 221 (1637)
++|+.||+|++||+++. +....+ ..|...+.+++|+|+ .+++|+.||+|++|| .+++++.++. .
T Consensus 186 ~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-----~ 255 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCP-----KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-----V 255 (344)
T ss_dssp EEEETTSCEEEEETTSS-----SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-----C
T ss_pred eeecccccccccccccc-----ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-----C
Confidence 99999999999999874 444443 356678999999872 688899999999999 8899999888 4
Q ss_pred CCccEEEEEECCCC-CEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCC-EEEEEecCCcEEEEEc
Q psy12802 222 KEREFTVACSSPSG-QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFES 298 (1637)
Q Consensus 222 ~~~~i~~~~~sp~g-~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~v~iwd~ 298 (1637)
|...|++++|+|+| ++|++|+.|+ |++||...+.. .....|...|.+++|+|++. .|++++.||+|++|++
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~------~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL------FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE------EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 66699999999998 5789999999 99999876542 34457888999999999986 5678999999999999
Q ss_pred cccc
Q psy12802 299 VLKR 302 (1637)
Q Consensus 299 ~~~~ 302 (1637)
.+..
T Consensus 330 ~~~~ 333 (344)
T 4gqb_B 330 PTEP 333 (344)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-34 Score=339.12 Aligned_cols=279 Identities=16% Similarity=0.151 Sum_probs=241.8
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCC
Q psy12802 6 YTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDD 78 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~ 78 (1637)
....|...|++++|+|||++|++++.|++|++||..++. |...|.+++|+|+|..|++|+.|+.+++|++...
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 345789999999999999999999999999999988765 5678999999999999999999999999998653
Q ss_pred CC--CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEec--CCCeEEEEeC
Q psy12802 79 WG--DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNV--RGAGVLSGHA 152 (1637)
Q Consensus 79 ~~--~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~--~g~~l~s~~~ 152 (1637)
.. ..........|...|.+++|+|++. +++++.|++|++||+++++. ..+.+|...|.+++|+| +|+.|++|+.
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 21 1122233446999999999999999 99999999999999999988 88899999999999988 5789999999
Q ss_pred CCcEEEEEecCCCCcccccccccccCCCCcEEEEecC--CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEE
Q psy12802 153 DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVA 229 (1637)
Q Consensus 153 dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~ 229 (1637)
||+|++||+++. .++..+.+|...|.+++|+| +.+++++.|++|++|| ..++.+..+... .+...+.++
T Consensus 219 Dg~v~~wd~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---~~~~~~~~~ 290 (354)
T 2pbi_B 219 DKKAMVWDMRSG-----QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---SIIFGASSV 290 (354)
T ss_dssp TSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---TCCSCEEEE
T ss_pred CCeEEEEECCCC-----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---CcccceeEE
Confidence 999999999873 67788889999999999998 4899999999999999 666666655532 244578999
Q ss_pred EECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEE
Q psy12802 230 CSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE 297 (1637)
Q Consensus 230 ~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd 297 (1637)
+|+|+|+++++|+.|+ |++||+..+... .....|...|++++|+|||++|++|+.||+|++|+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-----~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRV-----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEE-----EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCceE-----EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999 999998765532 23346788999999999999999999999999996
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=337.60 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=237.1
Q ss_pred CCCC-ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----------CcccceEEEEECCCCCeEEEEECCCeEEEEEcCC
Q psy12802 9 VSSN-VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG----------RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 9 ~~~~-~i~~~~~spdg~~la~~~~d~~i~vwd~~~~----------~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~ 77 (1637)
.|.. .|..++|||||++|++++.|++|++||..++ .|...|++++|+|+|++|++|+.|++|++|++..
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 4544 8999999999999999999999999998754 3788999999999999999999999999999876
Q ss_pred CCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce----eeecccCCcEEEEEEecCCCeEEEEeC
Q psy12802 78 DWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT----QTLYASNSFVVALCLNVRGAGVLSGHA 152 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~v~~l~~s~~g~~l~s~~~ 152 (1637)
+ ....+....+|...|.+++|+|+++ +++++.|++|++||+.++.. ..+.+|...|.+++|+|+++.|++|+.
T Consensus 93 ~--~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 93 D--DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170 (345)
T ss_dssp C---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred C--CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence 3 2234556678999999999999999 99999999999999987642 567889999999999999999999999
Q ss_pred CCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CC-C--------------ceeEEe
Q psy12802 153 DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD-G--------------RVHRIF 214 (1637)
Q Consensus 153 dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~-~--------------~~~~~~ 214 (1637)
|++|++||...... .+...+.+|...|.+++|+|+ .|++++.|++|++|| .. + +++..+
T Consensus 171 d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 171 DDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp TSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred CCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 99999999986432 345678899999999999984 899999999999998 22 1 122233
Q ss_pred eccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccC----CCcccCCCcceeEEEEcCCC-CEEEEEe
Q psy12802 215 DYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ----PNKTIPNLYTISALSWKRDG-SRIACGG 288 (1637)
Q Consensus 215 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~spdg-~~l~~~~ 288 (1637)
.. .|...|.+++|+|++..+++++.|+ |++|+.+......... ......|...|.+++|+|++ .+|++|+
T Consensus 248 ~~----~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 248 SG----FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp CS----SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred cC----CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 22 3677899999999999999999999 9999988654321100 01123577899999999998 4899999
Q ss_pred cCCcEEEEEcccccee
Q psy12802 289 LCGSVELFESVLKRTI 304 (1637)
Q Consensus 289 ~dg~v~iwd~~~~~~~ 304 (1637)
.||+|++|+..+++..
T Consensus 324 ~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 324 DDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TTSCEEEEEECC----
T ss_pred CCCcEEEEEecCCCCc
Confidence 9999999999766543
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-33 Score=331.69 Aligned_cols=280 Identities=15% Similarity=0.189 Sum_probs=240.9
Q ss_pred cCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEEcCC------------CCcccceEEEEECCCCCeEEEEECCCeEEEE
Q psy12802 7 TDVSSNVLQDDVFNLDI-VRLRSEGNVAGIWAWRGQN------------GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIY 73 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg-~~la~~~~d~~i~vwd~~~------------~~h~~~V~~~~~spd~~~la~~~~d~~i~iw 73 (1637)
...|...|++++|+|++ ++|++++.|++|++|++.. ..|...|++++|+|+|++|++|+.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 45789999999999965 8999999999999999753 2388999999999999999999999999999
Q ss_pred EcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecC------CCe
Q psy12802 74 KLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVR------GAG 146 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~------g~~ 146 (1637)
|+.++ +.+....+|...|.+++|+|++. +++++.|++|++||+++.....+.+|...|.++.|+|. +..
T Consensus 93 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 93 DVATG----ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ETTTT----EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred ECCCC----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 99885 55666678999999999999999 99999999999999987766889999999999999995 458
Q ss_pred EEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCC
Q psy12802 147 VLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKE 223 (1637)
Q Consensus 147 l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~ 223 (1637)
+++++.|++|++||+... .....+.+|..+|.+++|+|+ .|++++.||.|++|| .+++.+..+.. .
T Consensus 169 l~s~~~d~~i~~wd~~~~-----~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~ 237 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQF-----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA------Q 237 (319)
T ss_dssp EEEEETTSCEEEEETTTT-----EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------C
T ss_pred EEEEeCCCEEEEEECCcc-----hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------C
Confidence 999999999999999863 566778899999999999984 899999999999999 77888887763 3
Q ss_pred ccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCC---CcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc
Q psy12802 224 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQP---NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 224 ~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
..+.+++|+|+|..+++++.+++++|+++.......... .....+...+.+++|+|||++|++|+.||.|++||+.+
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 469999999999999999988899999886543211111 11122345789999999999999999999999999864
Q ss_pred c
Q psy12802 301 K 301 (1637)
Q Consensus 301 ~ 301 (1637)
+
T Consensus 318 ~ 318 (319)
T 3frx_A 318 A 318 (319)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.4e-34 Score=344.54 Aligned_cols=292 Identities=14% Similarity=0.146 Sum_probs=245.5
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~ 77 (1637)
+....|...|++++|+|||++|++|+.|++|++||..+++ |...|.+++|+|+|++|++|+.|+.|++|++.+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 3456789999999999999999999999999999998765 778899999999999999999999999999975
Q ss_pred CC---CCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce-eee-----cccCCcEEEEEEec-CCC
Q psy12802 78 DW---GDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT-QTL-----YASNSFVVALCLNV-RGA 145 (1637)
Q Consensus 78 ~~---~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~-~~~-----~~~~~~v~~l~~s~-~g~ 145 (1637)
.. +.........+|.+.|.++.|+|++. +++|+.|++|++||+.+++. ..+ .+|...|.+++|+| +++
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 219 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC
Confidence 32 11223334568999999999999755 99999999999999999987 444 57899999999987 889
Q ss_pred eEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCC--C
Q psy12802 146 GVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAP--H 220 (1637)
Q Consensus 146 ~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~--~ 220 (1637)
.|++|+.||+|++||++... ..+..+.+|...|.+++|+|+ .+++|+.||+|++|| .+++.+..+..+.. .
T Consensus 220 ~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 220 MFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp EEEEEETTSCEEEEETTTTC----CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred EEEEEECCCeEEEEECCCCC----cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence 99999999999999998542 567788899999999999984 899999999999999 88888887764322 0
Q ss_pred CCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 221 YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 221 ~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.+...+++++|+|+|+++++|+.|+ |++||........... .....|...|.+++|+|||++|++|+.||+|++|++.
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG-TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC-CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe-cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 1233589999999999999999999 9999987655432111 1124577899999999999999999999999999986
Q ss_pred cc
Q psy12802 300 LK 301 (1637)
Q Consensus 300 ~~ 301 (1637)
..
T Consensus 375 ~~ 376 (380)
T 3iz6_a 375 GH 376 (380)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.5e-34 Score=338.37 Aligned_cols=310 Identities=14% Similarity=0.181 Sum_probs=226.2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC---CcccceEEEEECCCCCeEEEEEC------CCeEEEEEcCCCCCCceeEee
Q psy12802 17 DVFNLDIVRLRSEGNVAGIWAWRGQNG---RKSYVVKGLAFSPDSTKLAVAQS------DNIIFIYKLGDDWGDKKVICN 87 (1637)
Q Consensus 17 ~~~spdg~~la~~~~d~~i~vwd~~~~---~h~~~V~~~~~spd~~~la~~~~------d~~i~iw~~~~~~~~~~~~~~ 87 (1637)
+.+.+++.++.+.+ +.....|++... .|...|++++|||||++|++|+. |+.|++|+..++.........
T Consensus 11 ~d~g~~~~~~~~~g-~~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~ 89 (357)
T 4g56_B 11 VDLGTENLYFQSNG-SSKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA 89 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE
T ss_pred CCCCccceEEecCC-CccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc
Confidence 44566666655544 567889997643 38999999999999999999997 788999998775433344444
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-----eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEec
Q psy12802 88 KFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-----QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVT 162 (1637)
Q Consensus 88 ~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-----~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~ 162 (1637)
...|...|++++|+|++.+++++.||+|++||+.+++. ....+|...|.+++|+|+|+.|++|+.||+|++||+.
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 45688999999999998888889999999999998864 2345899999999999999999999999999999998
Q ss_pred CCCCcccccccccccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC-CCE
Q psy12802 163 EDASNFDQQQGRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQA 237 (1637)
Q Consensus 163 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~~ 237 (1637)
+. ..+..+.+|...|.+++|+|+ .+++++.|++|++|| .++++...+... .+...+.+++|+|+ +.+
T Consensus 170 ~~-----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 170 QK-----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC---ASDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp TT-----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT---TCCSCEEEEEECTTSTTE
T ss_pred CC-----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec---cccccccchhhhhcccce
Confidence 73 677888999999999999873 788999999999999 777777666543 45668999999998 468
Q ss_pred EEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCC-CEEEEEecCCcEEEEEccccceeeeCcEEEEEec
Q psy12802 238 VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIWKGKFEMIYVS 315 (1637)
Q Consensus 238 l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 315 (1637)
|++|+.|+ |++||+...... .....+...|++++|+|++ ++|++|+.||+|++||+.+++....
T Consensus 242 la~g~~d~~i~~wd~~~~~~~-----~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--------- 307 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNPDSA-----QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--------- 307 (357)
T ss_dssp EEEEESSSCEEEEESSCGGGC-----EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE---------
T ss_pred EEEeecccceeEEECCCCcEe-----EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE---------
Confidence 89999999 999998865532 2334567799999999998 5789999999999999976543211
Q ss_pred CCeEEEecCCCCCCCceeEEecccCceeeEEEEec-CceEEEE-eCCCcEEEeeccc
Q psy12802 316 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-NDRYLVA-RTPDTLLLGDLHR 370 (1637)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~lv~-~~~~~i~i~d~~~ 370 (1637)
. .+...|++++|+| ++.++++ +.|++|++||+..
T Consensus 308 --------------------~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 308 --------------------L-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp --------------------C-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred --------------------C-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 1 1223799999998 5666655 8899999999854
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-33 Score=325.12 Aligned_cols=275 Identities=15% Similarity=0.146 Sum_probs=234.8
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~ 77 (1637)
+....|...|++++|||||++|++++.|++|++||+.++. |..+|.+++|+|++++|++|+.|++|++||+.+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 3445688999999999999999999999999999998875 678999999999999999999999999999988
Q ss_pred CCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEec-CCCeEEEEeCC
Q psy12802 78 DWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNV-RGAGVLSGHAD 153 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~-~g~~l~s~~~d 153 (1637)
+ +.+....+|...|++++|+|+++ +++|+.|++|++||++++.. ..+.+|...|.+++|+| ++..|++|+.|
T Consensus 87 ~----~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 87 G----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp C----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred C----cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 5 45556668999999999999999 99999999999999998854 67889999999999999 67899999999
Q ss_pred CcEEEEEecCCCCccccccccc-ccCCCCcEEEEecC----CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEE
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRV-VQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFT 227 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~----~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~ 227 (1637)
|+|++||+... .....+ .+|...+..+.|+| ..+++++.|++|++|| .+++++.++. .|...|.
T Consensus 163 ~~v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-----~h~~~v~ 232 (304)
T 2ynn_A 163 RTVKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-----GHMSNVS 232 (304)
T ss_dssp SEEEEEETTCS-----SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEE
T ss_pred CeEEEEECCCC-----CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-----CCCCCEE
Confidence 99999999764 233333 45678899999975 2799999999999999 8888998888 4666999
Q ss_pred EEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCC--EEEEEecCCcEEEEEcc
Q psy12802 228 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS--RIACGGLCGSVELFESV 299 (1637)
Q Consensus 228 ~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~l~~~~~dg~v~iwd~~ 299 (1637)
+++|+|++..|++|+.|+ |++||..+.+.. .....+...+.+++|+|++. ++++|+.|| +.+|++.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-----KTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEE-----EEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcee-----eeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 999999999999999999 999998876543 12234556899999999885 467776555 6677763
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=100.00 E-value=1.2e-26 Score=293.11 Aligned_cols=484 Identities=11% Similarity=0.105 Sum_probs=281.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcChhh-------HHHH------------------------HHHHHHHHHHcCCHHHHHH
Q psy12802 1049 IVDMYHQTGQWEKAYAIAEQHLNVGE-------IKAT------------------------FIQKCKQLEEENKFKEAER 1097 (1637)
Q Consensus 1049 ~~~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~------------------------~~~~a~~~~~~g~~~~A~~ 1097 (1637)
+++.|..+|.+.+|++++++..-.+. .... ...+|.++..+|+|+||..
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHH
Confidence 67889999999999999988542221 1111 1225899999999999999
Q ss_pred HHHHhCCchHHHHHHH-hcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccC---HHHHHHHHHhc
Q psy12802 1098 LYLIIGEPDLAISMFK-NQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNE---WKLAIKMYRSL 1173 (1637)
Q Consensus 1098 ~y~~~~~~~~ai~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~---~~~~~~~y~~~ 1173 (1637)
+|.+++.+++|+..+. ..++|++|.++.++.+. +.+|..+|.++++.|++++|+..|.+|++ |...+..+.+.
T Consensus 1071 IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~---p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1071 IFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHc
Confidence 9999999999987765 89999999999998766 67899999999999999999999999976 55678888888
Q ss_pred CCHHHHHHHHHhcC----CccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHH
Q psy12802 1174 NLWEDAYRIALSNG----GQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEV 1249 (1637)
Q Consensus 1174 g~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~ 1249 (1637)
|+|++|++.+.... ++..-..+|..|++.+++++ ++.|.+ ......
T Consensus 1148 GkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~-----------------------------~~n~ad 1197 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFIN-----------------------------GPNNAH 1197 (1630)
T ss_pred CCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHh-----------------------------CCCHHH
Confidence 88888888775532 22233456666666655543 222221 112234
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHH
Q psy12802 1250 HYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLL 1329 (1637)
Q Consensus 1250 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 1329 (1637)
+..+|..+++.|+|++|...|.+++.|.++...|.+.|++++|...+++-. .+.+|...+..+.+.|+|+.|..+..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555777777777777777777777777777777777777777777666542 23566666666666666666665443
Q ss_pred H----hCChHHHHHHHHHcCChHHHHHHHhhh---------------------CCCChhHHHHHHHHHHhc----ccccc
Q psy12802 1330 R----AHKVDLIIEKYKMNHMWNDALRVCGEY---------------------VPSKLPLLQQEYEKEINT----NISKD 1380 (1637)
Q Consensus 1330 ~----a~~~~~a~~~y~~~~~~~~Al~~~~~~---------------------~p~~~~~l~~~~~~~~~~----~~~~~ 1380 (1637)
. ++..++++.+|...|.|++|+++++.. .|..+-+-.+.|.....- ..+.+
T Consensus 1275 ~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1275 HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHH
Confidence 2 223345555666666666666665443 333322222222221110 12334
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch-----------hHHHHHHHHHHHHHHhccCccchhhhhhhhhhhhhhc
Q psy12802 1381 IHSLITQARQWEQNGEFYNAVECYLKIKNVDV-----------NLMVKILNEVTQLTLKYLNHDQSYKILPSLVPKLMEF 1449 (1637)
Q Consensus 1381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1449 (1637)
...+..+.-.|.+-|+|++|+....+..+..= ..-.+++-+|+....+..| ..+..|-..+...
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P-----~~lndLl~~l~~r 1429 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP-----LLLNDLLMVLSPR 1429 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhCh-----HHHHHHHHHhhhc
Confidence 45566666666666777766655544321100 0112223333333332221 3333333333333
Q ss_pred cCHHHHHHHHhcccchHHHHHHHHhccchHHHHHHHHhhCcchHHHHHHHHHHHHHhcCCCc-------------cc---
Q psy12802 1450 KQYDLAVRVYLNIDMVKEAVDIFIYTQNWNKARKLCAELKPEYLSYVENQYKEWLKKNGDAD-------------ML--- 1513 (1637)
Q Consensus 1450 ~~~~~A~~~y~~~~~~~~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~--- 1513 (1637)
=++.++..++.+.+.+.-+...+ ..+.+.-...|-+.+.+.|..+.+++ ..
T Consensus 1430 lD~~R~V~l~~~~~~l~lik~yl-------------~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La 1496 (1630)
T 1xi4_A 1430 LDHTRAVNYFSKVKQLPLVKPYL-------------RSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLA 1496 (1630)
T ss_pred CChHHHHHHHHHcCChHHhHHHH-------------HHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHH
Confidence 35666666665555533332222 22222223333344444444444332 11
Q ss_pred ---ccc---CHH-HHHHHHHHcccHHHHHHHHHhhChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCchhHHHHH
Q psy12802 1514 ---SEI---DIN-TALDMLMKQGQWNQCLDKAKNINTNLLHKYMALYAMHLIKNKEYAQLTQLFNEYGTPNIPQFYNIYK 1586 (1637)
Q Consensus 1514 ---~~~---d~~-~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 1586 (1637)
.+. .+. .|.-+|.+.|+|++|.+...+-+-.. + -...+.+.|+.+.+-+++.-......++.|...-
T Consensus 1497 ~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l~~-----d-Am~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~L 1570 (1630)
T 1xi4_A 1497 QRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYK-----D-AMQYASESKDTELAEELLQWFLQEEKRECFGACL 1570 (1630)
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccCHH-----H-HHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHH
Confidence 010 233 44445555588888887776544332 1 1234456777777655444444334445554433
Q ss_pred HHHHHH
Q psy12802 1587 QTAYCI 1592 (1637)
Q Consensus 1587 ~~~~~~ 1592 (1637)
-.+-++
T Consensus 1571 y~cy~l 1576 (1630)
T 1xi4_A 1571 FTCYDL 1576 (1630)
T ss_pred HHHhcc
Confidence 333333
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-33 Score=339.27 Aligned_cols=276 Identities=14% Similarity=0.135 Sum_probs=239.8
Q ss_pred cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
|..+|++++|+|++++|++|+.||+|+|||+.++ .......+|...|++++|+|+++ +++|+.|++|++||+.++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 8889999999999999999999999999999885 34445668999999999999999 999999999999999998
Q ss_pred ce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCe
Q psy12802 124 KT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRI 200 (1637)
Q Consensus 124 ~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~ 200 (1637)
++ ..+.+|...|.+++|+|+|+.|++|+.|++|++||+.+. .++.++.+|...|.++.|+|+ .+++|+.|++
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-----~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 88 888999999999999999999999999999999999873 677888999999999999884 8999999999
Q ss_pred EEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC--------------------CCEEEEEecCc-EEEEEeCCCCCcc
Q psy12802 201 VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS--------------------GQAVVVGSYDN-IKLFAWSPSKSVW 258 (1637)
Q Consensus 201 i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--------------------g~~l~~~~~d~-i~i~~~~~~~~~~ 258 (1637)
|++|| .++++...+. .|...|.+++|+|+ |.++++|+.|+ |++||+..+...
T Consensus 258 v~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~- 331 (410)
T 1vyh_C 258 VRVWVVATKECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL- 331 (410)
T ss_dssp EEEEETTTCCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-
T ss_pred EEEEECCCCceeeEec-----CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE-
Confidence 99999 7888888877 46678999999996 67999999999 999999876543
Q ss_pred ccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecc
Q psy12802 259 EEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ 338 (1637)
Q Consensus 259 ~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 338 (1637)
.....|...|.+++|+|+|++|++|+.||+|++||+.+++.+. .+. .
T Consensus 332 ----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~----------------------------~~~-~ 378 (410)
T 1vyh_C 332 ----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK----------------------------TLN-A 378 (410)
T ss_dssp ----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----------------------------EEE-C
T ss_pred ----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE----------------------------EEc-C
Confidence 2334577899999999999999999999999999996543221 111 2
Q ss_pred cCceeeEEEEecCceEEEE-eCCCcEEEeec
Q psy12802 339 YGYEITDVAIMGNDRYLVA-RTPDTLLLGDL 368 (1637)
Q Consensus 339 ~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~ 368 (1637)
+...|++++|+|++.++++ +.|++|++|++
T Consensus 379 h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 2337999999999877666 88999999985
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=322.88 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=237.9
Q ss_pred CCcccceEEEEECCC----CCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEE
Q psy12802 43 GRKSYVVKGLAFSPD----STKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKA 117 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd----~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~v 117 (1637)
..|.+.|++++|+|+ +.+|++|+.|++|+||++..+ .........+|...|.+++|+|++. +++++.|++|++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~--~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE--RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC--CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 469999999999985 678999999999999999763 1223345678999999999999999 999999999999
Q ss_pred EEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEE
Q psy12802 118 AHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILA 194 (1637)
Q Consensus 118 wd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 194 (1637)
||+.+++. ..+..|...+.+++|+|+|+.|++|+.||.|++|++.+. .....+..|...|.+++|+|+ .+++
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-----~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-----KKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-----SEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-----ceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999988 778888899999999999999999999999999999874 566677889999999999984 8999
Q ss_pred EecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcce
Q psy12802 195 AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTI 272 (1637)
Q Consensus 195 ~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i 272 (1637)
|+.||.|++|| .+++.+..+. .|...|.+++|+|+|++|++++.|+ |++||+...... .....|...|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~h~~~v 251 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-----GTLSGHASWV 251 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-----EEECCCSSCE
T ss_pred EcCCCeEEEEECCCCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-----EEEcCCCCce
Confidence 99999999999 8888888887 4666899999999999999999999 999998865532 2334577889
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCc
Q psy12802 273 SALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 352 (1637)
Q Consensus 273 ~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 352 (1637)
.+++|+|++.+|++++.||+|++||+.+++.+.. ...+...|.+++|+|++
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-----------------------------~~~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT-----------------------------FFDHQDQVWGVKYNGNG 302 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----------------------------ECCCSSCEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE-----------------------------EcCCCCcEEEEEECCCC
Confidence 9999999999999999999999999975543211 11123379999999998
Q ss_pred eEEEE-eCCCcEEEeec
Q psy12802 353 RYLVA-RTPDTLLLGDL 368 (1637)
Q Consensus 353 ~~lv~-~~~~~i~i~d~ 368 (1637)
.++++ +.|++|++||.
T Consensus 303 ~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SEEEEEETTCCEEEEEC
T ss_pred CEEEEEeCCCeEEEEeC
Confidence 76666 88999999985
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-32 Score=318.82 Aligned_cols=281 Identities=15% Similarity=0.172 Sum_probs=236.7
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
.|...|++++|||++++|++++.||+|++||+.++ ..+.....|..+|.++.|+|+++ +++|+.|++|++||+.+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 48899999999999999999999999999999874 45556667899999999999999 99999999999999999
Q ss_pred Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC-C--eEEEEecC
Q psy12802 123 NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA-G--YILAAGSD 198 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~--~l~~~~~d 198 (1637)
++. ..+.+|...|.+++|+|++++|++|+.||+|++||+.+.. .....+.+|...|.+++|+| + .+++|+.|
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 988 8899999999999999999999999999999999998642 34567789999999999998 3 79999999
Q ss_pred CeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC--CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeE
Q psy12802 199 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISA 274 (1637)
Q Consensus 199 ~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (1637)
++|++|| ..+.....+.. .+...+..+.|+| ++.+|++++.|+ |++||+...... .....|...|.+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-----~~~~~h~~~v~~ 233 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-----ATLEGHMSNVSF 233 (304)
T ss_dssp SEEEEEETTCSSCSEEEEC----CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-----EEEECCSSCEEE
T ss_pred CeEEEEECCCCCccceecc----CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-----eeeCCCCCCEEE
Confidence 9999999 56666555543 3556799999986 788999999999 999999875542 233457789999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce-
Q psy12802 275 LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR- 353 (1637)
Q Consensus 275 l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~- 353 (1637)
++|+|+++.|++|+.||+|++||..+++.... + ......+.+++++|++.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~----------------------------~-~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT----------------------------L-NVGLERSWCIATHPTGRK 284 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEE----------------------------E-CCSSSSEEEEEECTTCGG
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeee----------------------------c-cCCCccEEEEEECCCCCc
Confidence 99999999999999999999999976553321 0 11123688999999864
Q ss_pred -EEEEeCCCcEEEeeccc
Q psy12802 354 -YLVARTPDTLLLGDLHR 370 (1637)
Q Consensus 354 -~lv~~~~~~i~i~d~~~ 370 (1637)
+++++.++.+.+|++..
T Consensus 285 ~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 285 NYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp GCEEEEETTEEEEEECC-
T ss_pred eEEEEecCCceEEEEecc
Confidence 68888888899988754
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.8e-32 Score=322.90 Aligned_cols=279 Identities=17% Similarity=0.157 Sum_probs=231.7
Q ss_pred cCCCCCceeEEEE-----cC-CCCEEEEEeCCCeEEEEEcCCC--------------CcccceEEEEECCCCCeEEEEEC
Q psy12802 7 TDVSSNVLQDDVF-----NL-DIVRLRSEGNVAGIWAWRGQNG--------------RKSYVVKGLAFSPDSTKLAVAQS 66 (1637)
Q Consensus 7 ~~~~~~~i~~~~~-----sp-dg~~la~~~~d~~i~vwd~~~~--------------~h~~~V~~~~~spd~~~la~~~~ 66 (1637)
...|...|++++| +| |+++|++|+.|++|++||+..+ .|...|++++|+|++.+|++|+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 4468999999999 77 9999999999999999998632 37889999999999999999999
Q ss_pred CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeee---cccCCcEEEEEEec
Q psy12802 67 DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTL---YASNSFVVALCLNV 142 (1637)
Q Consensus 67 d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~l~~s~ 142 (1637)
|++|++||+.++ +.+....+|...|.+++|+|+++ +++++.|++|++||+.+...... .+|...|.+++|+|
T Consensus 97 D~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 97 DKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp TSEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred CCcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 999999999874 45555668999999999999999 99999999999999985544333 37889999999999
Q ss_pred CC----------CeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEeC-C-C
Q psy12802 143 RG----------AGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYES-D-G 208 (1637)
Q Consensus 143 ~g----------~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd~-~-~ 208 (1637)
++ ..|++++.||+|++||... .....+.+|..+|.+++|+|+ .|++|+.||.|++||. + +
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 87 7899999999999999442 566778899999999999984 8999999999999993 3 3
Q ss_pred ceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCcc--ccCCC------cccCCCcceeEEEEcCC
Q psy12802 209 RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVW--EEQPN------KTIPNLYTISALSWKRD 280 (1637)
Q Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~--~~~~~------~~~~~~~~i~~l~~spd 280 (1637)
.....+. +...|.+++|+|++.++++++.+++++|++.+..... ..... ....|...|.+++|+|+
T Consensus 247 ~~~~~~~------~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 247 YPQREFD------AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SCSEEEE------CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred ccceeec------CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 3444443 3346999999999999887776669999987654321 11000 01245678999999999
Q ss_pred CCEEEEEecCCcEEEEEcccc
Q psy12802 281 GSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 281 g~~l~~~~~dg~v~iwd~~~~ 301 (1637)
|++|++|+.||.|++|++.++
T Consensus 321 g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEEcc
Confidence 999999999999999998643
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.6e-32 Score=322.41 Aligned_cols=278 Identities=14% Similarity=0.204 Sum_probs=234.7
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcC
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVK 121 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~ 121 (1637)
.+|...|++++|+||+++|++|+.||+|++||+.++ ..+.....|...|.+++|+|+++ +++|+.|+.|++|++.
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC----CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 358999999999999999999999999999999874 34445567899999999999999 9999999999999998
Q ss_pred CCc----e-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEE
Q psy12802 122 ANK----T-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILA 194 (1637)
Q Consensus 122 ~~~----~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 194 (1637)
++. . ..+.+|.+.|.++.|+|++. +++++.|++|++||+.+. ..+..+.+|...|.+++|+|+ .+++
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-----QQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-----cEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 763 2 56789999999999999876 889999999999999873 677888899999999999984 8999
Q ss_pred EecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcce
Q psy12802 195 AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTI 272 (1637)
Q Consensus 195 ~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i 272 (1637)
|+.|++|++|| .++.++..+. .|...|++++|+|+|+.|++|+.|+ |++||+......... ....+...|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~~~~v 273 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY---SHDNIICGI 273 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCTTCCSCE
T ss_pred EeCCCcEEEEECCCCeeEEEEc-----CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---ccCCcccce
Confidence 99999999999 8888888887 4666899999999999999999999 999998865432111 111233479
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCc
Q psy12802 273 SALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 352 (1637)
Q Consensus 273 ~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 352 (1637)
.+++|+|+|++|++|+.||.|++||..+++... .+. .+...|++++|+|++
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~----------------------------~~~-~h~~~v~~~~~s~dg 324 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG----------------------------VLA-GHDNRVSCLGVTDDG 324 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----------------------------EEE-CCSSCEEEEEECTTS
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEee----------------------------Eee-cCCCcEEEEEEcCCC
Confidence 999999999999999999999999986543211 111 223379999999998
Q ss_pred eEEEE-eCCCcEEEee
Q psy12802 353 RYLVA-RTPDTLLLGD 367 (1637)
Q Consensus 353 ~~lv~-~~~~~i~i~d 367 (1637)
.++++ +.|++|+|||
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 87766 7899999996
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-32 Score=319.94 Aligned_cols=291 Identities=17% Similarity=0.164 Sum_probs=238.2
Q ss_pred CCCcccceEEEEECCCC-CeEEEEECCCeEEEEEcCCCCCC-ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEE
Q psy12802 42 NGRKSYVVKGLAFSPDS-TKLAVAQSDNIIFIYKLGDDWGD-KKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAA 118 (1637)
Q Consensus 42 ~~~h~~~V~~~~~spd~-~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vw 118 (1637)
..+|.+.|++++|+|++ ++|++|+.|++|++|++...... ...+....+|...|.+++|+|+++ +++++.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 35699999999999975 89999999999999998653111 123445668999999999999999 9999999999999
Q ss_pred EcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-------
Q psy12802 119 HVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG------- 190 (1637)
Q Consensus 119 d~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~------- 190 (1637)
|+.+++. ..+.+|...|.+++|+|++..|++|+.|++|++||++. .++..+.+|...|.++.|+|.
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------CEEEEECCCSSCEEEEEECCC------C
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999988 88999999999999999999999999999999999974 677888899999999999873
Q ss_pred -eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccC
Q psy12802 191 -YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 267 (1637)
Q Consensus 191 -~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~ 267 (1637)
.+++++.|+.|++|| .+++....+. .|...|.+++|+|+|++|++++.|+ |++||+...... ..+.
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~------~~~~ 235 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFI-----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM------YTLS 235 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE------EEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeec-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEec
Confidence 689999999999999 6777777776 4677999999999999999999999 999999876543 2233
Q ss_pred CCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEE
Q psy12802 268 NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA 347 (1637)
Q Consensus 268 ~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~ 347 (1637)
+...|.+++|+|++.++++++.+ .+++|++..+..... +... ...........+.+++
T Consensus 236 ~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~-----------------~~~~----~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 236 AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDD-----------------LRPE----FAGYSKAAEPHAVSLA 293 (319)
T ss_dssp CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEE-----------------ECCC----CTTCCGGGCCCEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeec-----------------cCcc----ccccccCcCcceeEEE
Confidence 45689999999999999887755 599999864433211 1110 0000111233688999
Q ss_pred EecCceEEEE-eCCCcEEEeecccc
Q psy12802 348 IMGNDRYLVA-RTPDTLLLGDLHRN 371 (1637)
Q Consensus 348 ~s~~~~~lv~-~~~~~i~i~d~~~~ 371 (1637)
|+|+|+++++ +.|+.|++||+.++
T Consensus 294 ~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 294 WSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ECCCCCEEEEeecCceEEEEEEeec
Confidence 9999988877 78999999998653
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=321.53 Aligned_cols=281 Identities=12% Similarity=0.141 Sum_probs=222.3
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----------C-cccceEEEEECCCCCeEEEEECCCeEEEEEc
Q psy12802 7 TDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG----------R-KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKL 75 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~----------~-h~~~V~~~~~spd~~~la~~~~d~~i~iw~~ 75 (1637)
...|...|.+++|+|+ +|++++.|++|++||+.++ . |...|++++|+|++++|++|+.|++|+||++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 4468899999999998 9999999999999998752 2 7889999999999999999999999999998
Q ss_pred CCCC---CCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC----ce-eeecccCCcEEEEEEecCCCe
Q psy12802 76 GDDW---GDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN----KT-QTLYASNSFVVALCLNVRGAG 146 (1637)
Q Consensus 76 ~~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~----~~-~~~~~~~~~v~~l~~s~~g~~ 146 (1637)
.... .....+....+|...|.+++|+|+|+ |++++.|++|++||+... ++ ..+.+|...|.+++|+|++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence 6421 11234555678999999999999999 999999999999999532 23 667899999999999999999
Q ss_pred EEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC----eEEEEecCCeEEEEe-CCC--------ceeEE
Q psy12802 147 VLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG----YILAAGSDRIVTIYE-SDG--------RVHRI 213 (1637)
Q Consensus 147 l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~d~~i~iwd-~~~--------~~~~~ 213 (1637)
|++|+.|++|++||...... .++..+.+|...|.++.|+|+ .+++++.|++|++|| ..+ .....
T Consensus 168 l~s~s~D~~i~iW~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDW---ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp EEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCe---eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence 99999999999999876432 467788899999999999984 689999999999999 322 22333
Q ss_pred eeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCc-ceeEEEEcC--CCCEEEEEec
Q psy12802 214 FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY-TISALSWKR--DGSRIACGGL 289 (1637)
Q Consensus 214 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~sp--dg~~l~~~~~ 289 (1637)
+.. .|...|.+++|+|++ .|++++.|+ |++|+...+. |.........|.. .|.+++|+| ++++|++|+.
T Consensus 245 ~~~----~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 245 LPD----VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE--WKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp CCS----CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE--EEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred ccc----ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc--eEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 321 367789999999776 788999999 9999987542 1111111234554 899999999 7899999999
Q ss_pred CCcEEEEEcc
Q psy12802 290 CGSVELFESV 299 (1637)
Q Consensus 290 dg~v~iwd~~ 299 (1637)
||+|++||+.
T Consensus 318 Dg~v~~W~~~ 327 (330)
T 2hes_X 318 DGIVNFWSLE 327 (330)
T ss_dssp TSEEEEEEC-
T ss_pred CCcEEEEEec
Confidence 9999999984
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-32 Score=320.35 Aligned_cols=302 Identities=16% Similarity=0.107 Sum_probs=232.5
Q ss_pred Cccc-ceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcC
Q psy12802 44 RKSY-VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVK 121 (1637)
Q Consensus 44 ~h~~-~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~ 121 (1637)
.|.. .|++++|||||++||+|+.|++|+|||+.++... .......+|...|.+++|+|+|+ |++++.|++|++||+.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 3655 8999999999999999999999999999874110 11122357999999999999999 9999999999999998
Q ss_pred CCce---eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEe
Q psy12802 122 ANKT---QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAG 196 (1637)
Q Consensus 122 ~~~~---~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~ 196 (1637)
++.. ..+.+|...|.+++|+|+|+.|++|+.|++|++||+...... .++..+.+|...|.+++|+|+ .+++++
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 169 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY--ECVSVLNSHTQDVKHVVWHPSQELLASAS 169 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE--EEEEEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe--EEEEEecCcCCCeEEEEECCCCCEEEEEe
Confidence 8753 678899999999999999999999999999999999875332 445677899999999999984 899999
Q ss_pred cCCeEEEEe-CCCce--eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccC-----------
Q psy12802 197 SDRIVTIYE-SDGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ----------- 261 (1637)
Q Consensus 197 ~d~~i~iwd-~~~~~--~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~----------- 261 (1637)
.|++|++|| ..+.. ..++. .|...|.+++|+|+|++|++++.|+ |++|+...........
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~-----~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLE-----GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEec-----CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 999999999 55543 34554 4777999999999999999999999 9999975432210000
Q ss_pred CCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCc
Q psy12802 262 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY 341 (1637)
Q Consensus 262 ~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 341 (1637)
......|...|.+++|+|++..|++++.|+.|++|+...+.......+.. .......+..
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--------------------~~~~~~~h~~ 304 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL--------------------TAHLHQAHSQ 304 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE--------------------EEEETTSSSS
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE--------------------EeeecccccC
Confidence 00111266789999999999999999999999999986442111100000 0011112344
Q ss_pred eeeEEEEecCc-eEEEE-eCCCcEEEeeccccce
Q psy12802 342 EITDVAIMGND-RYLVA-RTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 342 ~i~~v~~s~~~-~~lv~-~~~~~i~i~d~~~~~~ 373 (1637)
.|++++|+|++ .++++ +.|++|++|++.+.+.
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 79999999986 35555 7899999999876553
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=322.26 Aligned_cols=295 Identities=12% Similarity=0.111 Sum_probs=224.8
Q ss_pred EEEEEcCCCC---cccceEEEEECCCCCeEEEEECCCeEEEEEcCC-------CCCCceeEeeccCCCCCEEEEEEcCCC
Q psy12802 35 IWAWRGQNGR---KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD-------DWGDKKVICNKFIQQCPVTTMVWLADG 104 (1637)
Q Consensus 35 i~vwd~~~~~---h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~~v~~v~~s~~~ 104 (1637)
.+.|++.... |...|.+++|||||++|++++ |+++++||... .............+...|.+++|+|++
T Consensus 16 ~r~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 94 (344)
T 4gqb_B 16 AREWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER 94 (344)
T ss_dssp -------CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT
T ss_pred ccccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC
Confidence 4567765433 667899999999999999877 77778876321 000111111222356789999999997
Q ss_pred CEEEEeCCCcEEEEEcCCCce-----eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCC
Q psy12802 105 PIIYGQSDGKIKAAHVKANKT-----QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHP 179 (1637)
Q Consensus 105 ~l~~~~~d~~v~vwd~~~~~~-----~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~ 179 (1637)
.+++|+.||+|++||+.+++. ....+|.+.|.+++|+|+|++|++|+.||+|++||+.+. .++..+.+|.
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-----~~~~~~~~h~ 169 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-----VVLSSYRAHA 169 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCCS
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----cEEEEEcCcC
Confidence 799999999999999999875 234589999999999999999999999999999999873 7888899999
Q ss_pred CCcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC-CCEEEEEecCc-EEEEEeCC
Q psy12802 180 VPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 180 ~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~-i~i~~~~~ 253 (1637)
..|.+++|+|+ .+++++.|++|++|| .++++...+... .+...+.+++|+|+ ++++++|+.|+ |++||+..
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 99999999873 688999999999999 788888877643 35557999999995 57889999999 99999987
Q ss_pred CCCccccCCCcccCCCcceeEEEEcCCC-CEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCce
Q psy12802 254 SKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG 332 (1637)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (1637)
.+.. .....|...|++++|+|+| ++|++|+.||+|++||..+++..
T Consensus 247 ~~~~-----~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~---------------------------- 293 (344)
T 4gqb_B 247 TSCV-----LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF---------------------------- 293 (344)
T ss_dssp --CC-----EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----------------------------
T ss_pred CcEE-----EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----------------------------
Confidence 6543 2334677899999999998 57999999999999999655321
Q ss_pred eEEecccCceeeEEEEecCce-EEEE-eCCCcEEEeeccccce
Q psy12802 333 VILKSQYGYEITDVAIMGNDR-YLVA-RTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 333 ~~~~~~~~~~i~~v~~s~~~~-~lv~-~~~~~i~i~d~~~~~~ 373 (1637)
.+.. +...|++++|+|++. ++++ +.|++|++|++.+..+
T Consensus 294 -~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 294 -RSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp -EECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred -EEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 1111 223799999999975 5544 7799999999876543
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=335.51 Aligned_cols=330 Identities=16% Similarity=0.164 Sum_probs=259.1
Q ss_pred CCCceeEEEEcCCCC-EEEEEeCCCeEEEEEc----CCCC-----------------------cccceEEEEECCCCCeE
Q psy12802 10 SSNVLQDDVFNLDIV-RLRSEGNVAGIWAWRG----QNGR-----------------------KSYVVKGLAFSPDSTKL 61 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~-~la~~~~d~~i~vwd~----~~~~-----------------------h~~~V~~~~~spd~~~l 61 (1637)
|...|++++|+|+|+ +|++++.|+.|++|++ .+++ |...|++++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 457899999999999 9999999999999999 7666 56699999999999999
Q ss_pred EEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCc-----
Q psy12802 62 AVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSF----- 134 (1637)
Q Consensus 62 a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~----- 134 (1637)
++++.||.|++||... ..+.....|...|.+++|+|+++ +++++.|+.|++||+.+++. ..+..+...
T Consensus 124 ~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 124 VTGVENGELRLWNKTG-----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEETTSCEEEEETTS-----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEeCCCeEEEEeCCC-----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 9999999999999432 44555668999999999999999 99999999999999999987 666666665
Q ss_pred ----------EEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEE
Q psy12802 135 ----------VVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVT 202 (1637)
Q Consensus 135 ----------v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~ 202 (1637)
+.+++|+|++ .+++++.||.|++||+... .....+..|..+|.+++|+|+ .+++++.|+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK-----TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp -------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS-----SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred eccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC-----ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 8999999985 5889999999999999874 566778899999999999984 899999999999
Q ss_pred EEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCC
Q psy12802 203 IYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD 280 (1637)
Q Consensus 203 iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 280 (1637)
+|| .+++.+..+. .|...+.+++|+|++ .+++++.++ |++||+...... .....+...|.+++|+|+
T Consensus 273 i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 273 IWHGGNGNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL-----ALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp EECSSSBSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE-----EEEECTTCCEEEEEECTT
T ss_pred EEECCCCccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-----EecccCCccEEEEEEcCC
Confidence 999 7778887776 466689999999999 999999999 999999765543 222345679999999999
Q ss_pred CCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEec-ccCc-eeeEEEEecCceEEEE-
Q psy12802 281 GSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS-QYGY-EITDVAIMGNDRYLVA- 357 (1637)
Q Consensus 281 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-~i~~v~~s~~~~~lv~- 357 (1637)
+++|++++.||.|++||+.+++...... +..... ...... . ..+.... +... .|+++.|+|+++++++
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~----~~~~~~-~~~~~~-~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSL----YGNRDG-ILNPLP-I---PLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC-------------------CEE-C---CEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEECCCeEEEEECCCCccceeee----eccccc-ccCccc-c---hhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999999999999997654211100 000000 000000 0 1122222 2222 8999999999877755
Q ss_pred eCCCcEEEeeccc
Q psy12802 358 RTPDTLLLGDLHR 370 (1637)
Q Consensus 358 ~~~~~i~i~d~~~ 370 (1637)
+.++.|.+||+.+
T Consensus 413 ~~dg~i~iw~~~g 425 (425)
T 1r5m_A 413 YSLQEGSVVAIPG 425 (425)
T ss_dssp ESSSCCEEEECCC
T ss_pred ecCceEEEEeecC
Confidence 8899999999853
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.4e-32 Score=322.99 Aligned_cols=312 Identities=13% Similarity=0.128 Sum_probs=259.3
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCC-------CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQN-------GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~-------~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
.+...|.+++|||||++++++..++.+..|.... ..|...|++++|+|++++|++++ ||.|++|++.++...
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3556789999999999999887766655554332 24889999999999999999998 999999999875322
Q ss_pred ceeE-eeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc--e-eeecccCCcEEEEEEecCCCeEEEEeCCCcE
Q psy12802 82 KKVI-CNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK--T-QTLYASNSFVVALCLNVRGAGVLSGHADGSI 156 (1637)
Q Consensus 82 ~~~~-~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~--~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i 156 (1637)
.... .....|...|.+++|+|+++ +++++.|+.|++||+.+++ . ..+..|...|.+++|+|+++.+++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 2221 12236889999999999999 9999999999999999887 3 6678899999999999999999999999999
Q ss_pred EEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC
Q psy12802 157 VRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP 233 (1637)
Q Consensus 157 ~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp 233 (1637)
++||+.+. +....+..|...|.+++|+|+ .+++++.|+.|++|| .+++.+..+. +...+.+++|+|
T Consensus 166 ~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 166 AVWDLHNQ-----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCP 234 (337)
T ss_dssp EEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECT
T ss_pred EEEeCCCC-----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec------CCCceEEEEECC
Confidence 99999873 667788889999999999984 899999999999999 7777777765 455799999999
Q ss_pred CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEE
Q psy12802 234 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI 312 (1637)
Q Consensus 234 ~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 312 (1637)
+|+.+++++.++ |++|++..... .....|...|.++.|+|++++|++++.||.|++||+.+++....
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~------ 302 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDK------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ------ 302 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCE------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE------
T ss_pred CCCEEEEEcCCCcEEEEECCCCCe------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE------
Confidence 999999999999 99999887543 23445778999999999999999999999999999976543211
Q ss_pred EecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeec
Q psy12802 313 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDL 368 (1637)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~ 368 (1637)
......|.++.|+|+++++++ +.++.|.+||+
T Consensus 303 ------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 ------------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ------------------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ------------------------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 112337999999999877776 78999999986
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-32 Score=333.44 Aligned_cols=351 Identities=13% Similarity=0.118 Sum_probs=257.3
Q ss_pred EEEEEcCCCC-------cccceEEEEECCCCC-eEEEEECCCeEEEEEc----CCCCC-----CceeE-eecc------C
Q psy12802 35 IWAWRGQNGR-------KSYVVKGLAFSPDST-KLAVAQSDNIIFIYKL----GDDWG-----DKKVI-CNKF------I 90 (1637)
Q Consensus 35 i~vwd~~~~~-------h~~~V~~~~~spd~~-~la~~~~d~~i~iw~~----~~~~~-----~~~~~-~~~~------~ 90 (1637)
+.+|+.+... |...|++++|+|+|+ +|++|+.||.|++|++ .++.. ....+ .... +
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred cccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence 4566665433 568999999999999 9999999999999999 76421 01111 1111 1
Q ss_pred CCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccc
Q psy12802 91 QQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFD 169 (1637)
Q Consensus 91 ~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~ 169 (1637)
|.+.|++++|+|+++ +++++.||.|++||........+.+|...|.+++|+|+++.|++++.||.|++||+.+.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----- 181 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG----- 181 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-----
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-----
Confidence 577999999999999 99999999999999544444888999999999999999999999999999999999863
Q ss_pred ccccccccCCCC---------------cEEEEecC-CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEEC
Q psy12802 170 QQQGRVVQHPVP---------------PYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS 232 (1637)
Q Consensus 170 ~~~~~~~~~~~~---------------v~~~~~~~-~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~s 232 (1637)
.....+..+... +.++.|+| +.+++++.+|.|++|| .+++.+..+. .|...+.+++|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~~ 256 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI-----GHHGPISVLEFN 256 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC-----CCSSCEEEEEEE
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec-----cCCCceEEEEEC
Confidence 556666666665 89999987 5899999999999999 7777777776 466689999999
Q ss_pred CCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEE
Q psy12802 233 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEM 311 (1637)
Q Consensus 233 p~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 311 (1637)
|+++.|++++.++ |++|++...... .....|...|.++.|+|++ .+++++.||.|++||+.+++.+..
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~----- 325 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL----- 325 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE-----
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccc-----eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe-----
Confidence 9999999999999 999998875543 2223467799999999999 999999999999999965532211
Q ss_pred EEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEec
Q psy12802 312 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFD 390 (1637)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 390 (1637)
.......|.++.|+|+++++++ +.++.|.+||+.++........... .
T Consensus 326 ------------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~---- 374 (425)
T 1r5m_A 326 ------------------------SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR---D---- 374 (425)
T ss_dssp ------------------------EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------
T ss_pred ------------------------cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc---c----
Confidence 1122347999999999877776 7789999999976543211110000 0
Q ss_pred CceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcc--eeeeeeeccCCCeEEeeccCCcEEE
Q psy12802 391 NVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLY--TISALSWKRDGSRIACGGLCGSVEL 468 (1637)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~--~I~~l~~s~dg~~la~g~~dg~v~l 468 (1637)
-.+.+... ..+ .....|.. .|++++|+|||++|++++.||.|++
T Consensus 375 -----~~~~~~~~--------~~~---------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 375 -----GILNPLPI--------PLY---------------------ASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp ---------CEEC--------CEE---------------------EEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred -----cccCcccc--------hhh---------------------hhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 00000000 000 01113433 8999999999999999999999999
Q ss_pred ehh
Q psy12802 469 FES 471 (1637)
Q Consensus 469 w~~ 471 (1637)
|+.
T Consensus 421 w~~ 423 (425)
T 1r5m_A 421 VAI 423 (425)
T ss_dssp EEC
T ss_pred Eee
Confidence 985
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-31 Score=318.55 Aligned_cols=278 Identities=13% Similarity=0.195 Sum_probs=233.8
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
+|...|++++|+||+++|++|+.||+|++||..++ +.......|...|.+++|+|+|. +++++.|+.+++|++..
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 48999999999999999999999999999998774 33344456888999999999999 99999999999999865
Q ss_pred Cc-------eeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC----Ce
Q psy12802 123 NK-------TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA----GY 191 (1637)
Q Consensus 123 ~~-------~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~----~~ 191 (1637)
.. ...+.+|...|.+++|+|++..|++++.||+|++||+.+. +++..+.+|...|.++.|+| +.
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-----QLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 42 2567789999999999999999999999999999999873 67788899999999999976 38
Q ss_pred EEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCC
Q psy12802 192 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL 269 (1637)
Q Consensus 192 l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~ 269 (1637)
+++|+.||+|++|| .+++++..+. .|...|.+++|+|+|..|++++.|+ |++||+........ .....+.
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~~~~~ 284 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI---YSKESII 284 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCCCcc
Confidence 99999999999999 8899988887 4667999999999999999999999 99999876543210 1111223
Q ss_pred cceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEe
Q psy12802 270 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM 349 (1637)
Q Consensus 270 ~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s 349 (1637)
..+.+++|+|+|++|++|+.||+|++||+.+++.+ .....+...|++++|+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-----------------------------~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV-----------------------------SILFGHENRVSTLRVS 335 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-----------------------------EEECCCSSCEEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE-----------------------------EEEECCCCcEEEEEEC
Confidence 47889999999999999999999999999655321 1111223479999999
Q ss_pred cCceEEEE-eCCCcEEEee
Q psy12802 350 GNDRYLVA-RTPDTLLLGD 367 (1637)
Q Consensus 350 ~~~~~lv~-~~~~~i~i~d 367 (1637)
|+++++++ +.|++|++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 99887776 7899999995
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.2e-31 Score=310.98 Aligned_cols=275 Identities=20% Similarity=0.232 Sum_probs=236.2
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 8 ~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
..|...|++++|+|+|++|++++.|+.|++|+..+++ |...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-- 97 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-- 97 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--
Confidence 4688999999999999999999999999999998765 7889999999999999999999999999999874
Q ss_pred CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEE
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVR 158 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~i 158 (1637)
+.+....+|...|.++.|+|+++ +++++.|++|++||+++++. ..+..|..+|.+++|+|+|+.|++++.||.|++
T Consensus 98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 98 --KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred --cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 45555668999999999999999 99999999999999999987 888899999999999999999999999999999
Q ss_pred EEecCCCCccccccccc-ccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 159 YYVTEDASNFDQQQGRV-VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 159 wd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
||+.+. ..+..+ ..+..++.+++|+|+ .+++++.|+.|++|| .+++.+..+..+.. ....+......++
T Consensus 176 wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 248 (312)
T 4ery_A 176 WDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFANFSVTG 248 (312)
T ss_dssp EETTTC-----CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC--SSSCCCEEEECSS
T ss_pred EECCCC-----ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC--ceEEEEEEEEeCC
Confidence 999874 444443 456778999999984 899999999999999 78888888875432 1122333344578
Q ss_pred CCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEe--cCCcEEEEEc
Q psy12802 235 GQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG--LCGSVELFES 298 (1637)
Q Consensus 235 g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~--~dg~v~iwd~ 298 (1637)
+.++++|+.|+ |++||+...... .....|...|.+++|+|+++.+++++ .||+|++|+.
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTKEIV-----QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTCCEE-----EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CcEEEEECCCCEEEEEECCCchhh-----hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 99999999999 999999876543 23345778999999999999999987 6999999986
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-31 Score=322.88 Aligned_cols=270 Identities=13% Similarity=0.199 Sum_probs=229.8
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------------------------ccceEEEEECCCCCeEEEE
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK-------------------------SYVVKGLAFSPDSTKLAVA 64 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h-------------------------~~~V~~~~~spd~~~la~~ 64 (1637)
|...|++++|||||++|++|+ ++++++|++.++.. ...|++++|+|||++|++|
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 788999999999999999987 67999999987651 1139999999999999999
Q ss_pred ECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEec-
Q psy12802 65 QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNV- 142 (1637)
Q Consensus 65 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~- 142 (1637)
+.|++|++||+.++ +.+....+|...|.+++|+|+++ +++++.|++|++||++++++.....+...+.+++|+|
T Consensus 142 ~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 142 AEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp ETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred cCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 99999999999874 55666778999999999999999 9999999999999999998855555778899999999
Q ss_pred CCCeEEEEeCCCcEEEEEecCCCCccccccccc-------ccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCC----
Q psy12802 143 RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRV-------VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDG---- 208 (1637)
Q Consensus 143 ~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~-------~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~---- 208 (1637)
+|++|++|+.||+|++||+.+. ..+..+ .+|...|.+++|+|+ .+++|+.|++|++|| .++
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~-----~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETG-----FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTC-----CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred CCCEEEEEcCCCcEEEEECCCC-----cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 8999999999999999998863 333333 579999999999984 899999999999999 332
Q ss_pred --------ceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC
Q psy12802 209 --------RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR 279 (1637)
Q Consensus 209 --------~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 279 (1637)
.+...+. +|...|.+++|+|++.+|++|+.|+ |++||...+... .....|...|.+++|+|
T Consensus 293 ~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-----~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 293 DSKTPNSGTCEVTYI-----GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-----LMLQGHRNSVISVAVAN 362 (393)
T ss_dssp --------CEEEEEE-----CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECS
T ss_pred cccCCCCCcceEEEe-----cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-----EEECCCCCCEEEEEecC
Confidence 2334444 4667899999999999999999999 999998876543 23345778999999986
Q ss_pred ------CCCEEEEEecCCcEEEEEcc
Q psy12802 280 ------DGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 280 ------dg~~l~~~~~dg~v~iwd~~ 299 (1637)
++++|++|+.||+|++|++.
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECccc
Confidence 68899999999999999984
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-31 Score=312.74 Aligned_cols=298 Identities=14% Similarity=0.127 Sum_probs=232.2
Q ss_pred CcccceEEEEE-----CC-CCCeEEEEECCCeEEEEEcCCCCC---CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC
Q psy12802 44 RKSYVVKGLAF-----SP-DSTKLAVAQSDNIIFIYKLGDDWG---DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG 113 (1637)
Q Consensus 44 ~h~~~V~~~~~-----sp-d~~~la~~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~ 113 (1637)
+|...|++++| +| |+++|++|+.|++|++||+..... .........+|...|.+++|+|++. +++++.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 58999999999 77 999999999999999999975321 1233445668999999999999999 99999999
Q ss_pred cEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--
Q psy12802 114 KIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-- 190 (1637)
Q Consensus 114 ~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-- 190 (1637)
+|++||+++++. ..+.+|...|.+++|+|+|+.|++++.|++|++||+..... ........|...|.++.|+|+
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---FSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---EECCTTTSCSSCEEEEEECCCCC
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---eeeecccCCCceeeeeeeccccc
Confidence 999999999988 88899999999999999999999999999999999974211 122233478999999999873
Q ss_pred ----------eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccc
Q psy12802 191 ----------YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE 259 (1637)
Q Consensus 191 ----------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~ 259 (1637)
.+++++.|+.|++||.+++....+. .|...|.+++|+|+|++|++|+.|+ |++||+......
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-- 248 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK-----AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-- 248 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC--
T ss_pred cccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc-----CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc--
Confidence 5899999999999997777777777 4667999999999999999999999 999998543221
Q ss_pred cCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEeccc
Q psy12802 260 EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQY 339 (1637)
Q Consensus 260 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 339 (1637)
.....+...|.+++|+|++.++++ +.|+.|++||+.+++..... .+..... ........+
T Consensus 249 ---~~~~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~ 308 (343)
T 2xzm_R 249 ---QREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVC---------------TIEAEPI-TKAEGQKGK 308 (343)
T ss_dssp ---SEEEECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEE---------------ECCCCSG-GGBTTBCCS
T ss_pred ---ceeecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceE---------------EeecCcc-hhhhhhcCC
Confidence 222334557999999999987765 45888999999765422100 0000000 000000112
Q ss_pred CceeeEEEEecCceEEEE-eCCCcEEEeecccc
Q psy12802 340 GYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRN 371 (1637)
Q Consensus 340 ~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~ 371 (1637)
...|++++|+|++.++++ +.|++|++|++.++
T Consensus 309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 346899999999877766 78999999998654
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.7e-32 Score=326.10 Aligned_cols=308 Identities=15% Similarity=0.181 Sum_probs=243.8
Q ss_pred eeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEE
Q psy12802 83 KVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYY 160 (1637)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd 160 (1637)
.......+|.+.|++++|+|+++ +++|+.|++|++||+.+++. ..+..|...|.+++|+|+|+.|++|+.|+.|++|+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 44556678999999999999999 99999999999999999987 88899999999999999999999999999999999
Q ss_pred ecCCCC--cccccccccccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC-
Q psy12802 161 VTEDAS--NFDQQQGRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP- 233 (1637)
Q Consensus 161 ~~~~~~--g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp- 233 (1637)
+..... +.......+.+|.+.+.++.|+|+ .+++|+.|++|++|| .+++.+..+.......|...+.+++|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 975321 000244567899999999999873 799999999999999 8888887774332225788999999987
Q ss_pred CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEE
Q psy12802 234 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI 312 (1637)
Q Consensus 234 ~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 312 (1637)
+++.+++|+.|+ |++||+...... ......|...|.+++|+|+|++|++|+.||+|++||+.+++.+..
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~------ 286 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRA----VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV------ 286 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCC----CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE------
T ss_pred CCCEEEEEECCCeEEEEECCCCCcc----eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE------
Confidence 899999999999 999998743321 123346788999999999999999999999999999976653321
Q ss_pred EecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEecC
Q psy12802 313 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDN 391 (1637)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1637)
+.... . . .......|++++|+|+++++++ +.++.|++||+.+++......
T Consensus 287 ~~~~~---------~---~----~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~------------- 337 (380)
T 3iz6_a 287 YNREP---------D---R----NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG------------- 337 (380)
T ss_dssp ECCCC---------S---S----SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC-------------
T ss_pred ecccc---------c---c----cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe-------------
Confidence 11100 0 0 0001124889999999888877 689999999986544321100
Q ss_pred ceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehh
Q psy12802 392 VTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 471 (1637)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~ 471 (1637)
....+|.+.|++++|||||++|++|+.||+|+||+.
T Consensus 338 --------------------------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 338 --------------------------------------------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp --------------------------------------------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred --------------------------------------------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 011267788999999999999999999999999996
Q ss_pred hh
Q psy12802 472 VL 473 (1637)
Q Consensus 472 ~~ 473 (1637)
..
T Consensus 374 ~~ 375 (380)
T 3iz6_a 374 SG 375 (380)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-33 Score=343.14 Aligned_cols=262 Identities=12% Similarity=0.082 Sum_probs=195.3
Q ss_pred CCCceeEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 10 SSNVLQDDVFNLDI---------VRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 10 ~~~~i~~~~~spdg---------~~la~~~~d~~i~vwd~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
+...|.+++|+|++ ++||+++.++.. -..+|+++.+++++.|++|+||++.++..
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~----------------~~~~~~~~~laS~s~D~tI~iWd~~~~~~ 195 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD----------------EPLNEHLEMFDKEKHSSCIQIFKMNTSTL 195 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------CEEEEEEEEETTTC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC----------------CccchhhhhhccCCCCceEEEEEccCCCC
Confidence 35788999999987 799998866431 12489999999999999999999977522
Q ss_pred CceeEeeccCCCCCEEEEEEcCC------CC-EEEEeCCCcEEEEEcCCCce------------eeecccCCcEEEEEEe
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLAD------GP-IIYGQSDGKIKAAHVKANKT------------QTLYASNSFVVALCLN 141 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~------~~-l~~~~~d~~v~vwd~~~~~~------------~~~~~~~~~v~~l~~s 141 (1637)
..........|.+.|.+++|+|+ +. |++++.||+|++||+.++.. ..+.+|...|.+++|+
T Consensus 196 ~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 196 HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence 11112223457789999999997 46 89999999999999987642 3677899999999999
Q ss_pred cCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEE--EecC---CeEEEEecCCeEEEEe-CCCceeEEee
Q psy12802 142 VRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYAL--SWPA---GYILAAGSDRIVTIYE-SDGRVHRIFD 215 (1637)
Q Consensus 142 ~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~--~~~~---~~l~~~~~d~~i~iwd-~~~~~~~~~~ 215 (1637)
|++ .|++|+.||+|++||+.+.. .+...+.+|..+|.++ .|+| ..|++++.|++|++|| .+++++.++.
T Consensus 276 ~~~-~lasgs~DgtV~lWD~~~~~----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~ 350 (524)
T 2j04_B 276 SPT-TVVCGFKNGFVAEFDLTDPE----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV 350 (524)
T ss_dssp SSS-EEEEEETTSEEEEEETTBCS----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE
T ss_pred CCC-eEEEEeCCCEEEEEECCCCC----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc
Confidence 864 89999999999999998642 3445678999999999 5666 3689999999999999 7777766665
Q ss_pred ccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEE
Q psy12802 216 YTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 294 (1637)
Q Consensus 216 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~ 294 (1637)
.+. ....+.+++|+|+++.+++++.|+ |++||+...... .....|...|++++|||+|+.|++|+.||+|+
T Consensus 351 ~~~---~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~-----~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 351 SRF---RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV-----HPLVSRETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp EEC---SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC-----EEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred ccc---ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc-----eeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 431 112478899999999999999998 999998765432 22345888999999999999999999999999
Q ss_pred EEEccc
Q psy12802 295 LFESVL 300 (1637)
Q Consensus 295 iwd~~~ 300 (1637)
+||...
T Consensus 423 lwd~~~ 428 (524)
T 2j04_B 423 ITNAAR 428 (524)
T ss_dssp CCBSCS
T ss_pred EEechH
Confidence 999853
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=338.89 Aligned_cols=344 Identities=10% Similarity=0.055 Sum_probs=262.9
Q ss_pred CceeEEEEcCCCC-EEEEE----------eCCCeEEEEEcCCCC---------cccceEEEEECCCCCeEEEEECCCeEE
Q psy12802 12 NVLQDDVFNLDIV-RLRSE----------GNVAGIWAWRGQNGR---------KSYVVKGLAFSPDSTKLAVAQSDNIIF 71 (1637)
Q Consensus 12 ~~i~~~~~spdg~-~la~~----------~~d~~i~vwd~~~~~---------h~~~V~~~~~spd~~~la~~~~d~~i~ 71 (1637)
..+++++|||||+ +++++ +.|+.|++||+.++. |...|++++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4678999999997 99999 789999999997653 678999999999999999999999999
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEEcCC-CC-EEEEeCCCcEEEEEcCCCc------e----eeecccCCcEEEEE
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVWLAD-GP-IIYGQSDGKIKAAHVKANK------T----QTLYASNSFVVALC 139 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~-l~~~~~d~~v~vwd~~~~~------~----~~~~~~~~~v~~l~ 139 (1637)
+|++.+.....+.+....+|...|++++|+|+ +. +++++.|+.|++||+.+++ . .....|...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 99998732223456667789999999999998 67 9999999999999999886 3 23467999999999
Q ss_pred EecC-CCeEEEEeCCCcEEEEEecCCCCcccccccccccC------CCCcEEEEecCC---eEEEEecCC---eEEEEe-
Q psy12802 140 LNVR-GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQH------PVPPYALSWPAG---YILAAGSDR---IVTIYE- 205 (1637)
Q Consensus 140 ~s~~-g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~------~~~v~~~~~~~~---~l~~~~~d~---~i~iwd- 205 (1637)
|+|+ +..|++++.||.|++||+++. ..+..+..+ ...|.+++|+|+ .+++++.|+ .|++||
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAK-----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTT-----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCC-----CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 9999 789999999999999999874 555555555 789999999984 688899998 999999
Q ss_pred CCC-ceeEEeeccCCCCCCccEEEEEECC-CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCC-
Q psy12802 206 SDG-RVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG- 281 (1637)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg- 281 (1637)
.++ .++..+.. .|...|.+++|+| ++++|++++.|+ |++||+...... .....|...|.+++|+|++
T Consensus 248 ~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 248 RNANTPLQTLNQ----GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----SQFPARGNWCFKTKFAPEAP 318 (416)
T ss_dssp TSTTSCSBCCCS----CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----EEEECSSSCCCCEEECTTCT
T ss_pred CCCCCCcEEeec----CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----eeecCCCCceEEEEECCCCC
Confidence 554 55555541 2566899999999 999999999999 999998876543 2233567789999999999
Q ss_pred CEEEEEecCCcEEEEEccccceeeeCcE--------EEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce
Q psy12802 282 SRIACGGLCGSVELFESVLKRTIWKGKF--------EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 353 (1637)
Q Consensus 282 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 353 (1637)
.+|++++.||.|++||+..........- ...+..+....... .... ...+........+++.++|+|+|+
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~s~dg~ 396 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK-EKPS-VFHLQAPTWYGEPSPAAHWAFGGK 396 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSCC----------------------CC-SCCC-SSCCCCCSTTCCCSCCCEEETTTE
T ss_pred CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc-cccc-cccccCCccccCCccceEEeeCCe
Confidence 8999999999999999976653322100 00000000000000 0000 000001111344678999999999
Q ss_pred EEEE-eCCCcEEEeecccc
Q psy12802 354 YLVA-RTPDTLLLGDLHRN 371 (1637)
Q Consensus 354 ~lv~-~~~~~i~i~d~~~~ 371 (1637)
++++ +.++.|+||++.+.
T Consensus 397 ~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 397 LVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp EECBCTTSSCBCCBCCCCC
T ss_pred EEEEeCCCCeEEEEEeccC
Confidence 9988 56899999998753
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-32 Score=332.15 Aligned_cols=365 Identities=12% Similarity=0.118 Sum_probs=264.5
Q ss_pred ccceEEEEECCCCC-eEEEE----------ECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC
Q psy12802 46 SYVVKGLAFSPDST-KLAVA----------QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG 113 (1637)
Q Consensus 46 ~~~V~~~~~spd~~-~la~~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~ 113 (1637)
...|.+++|||+|+ +|+++ +.|+.|++||+.++... .......|...|++++|+|+++ +++++.||
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPIASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCSCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--cEEEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 45789999999987 89998 88999999999874211 1222346889999999999999 99999999
Q ss_pred cEEEEEcCC----Cce-eeecccCCcEEEEEEecC-CCeEEEEeCCCcEEEEEecCCC------CcccccccccccCCCC
Q psy12802 114 KIKAAHVKA----NKT-QTLYASNSFVVALCLNVR-GAGVLSGHADGSIVRYYVTEDA------SNFDQQQGRVVQHPVP 181 (1637)
Q Consensus 114 ~v~vwd~~~----~~~-~~~~~~~~~v~~l~~s~~-g~~l~s~~~dg~i~iwd~~~~~------~g~~~~~~~~~~~~~~ 181 (1637)
.|++||+.+ .+. ..+.+|...|.+++|+|+ ++.|++++.||+|++||+.+.. .. ........|...
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 167 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP--LTPGQSMSSVDE 167 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC--BCCCCSCCSSCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc--cccccccCCCCC
Confidence 999999988 334 788899999999999998 8999999999999999998753 10 122334679999
Q ss_pred cEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCC-CCCCccEEEEEECCCC-CEEEEEecC----cEEEEEe
Q psy12802 182 PYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAP-HYKEREFTVACSSPSG-QAVVVGSYD----NIKLFAW 251 (1637)
Q Consensus 182 v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~-~~~~~~i~~~~~sp~g-~~l~~~~~d----~i~i~~~ 251 (1637)
|.+++|+|+ .+++++.|+.|++|| .+++.+..+..+.. ..|...+.+++|+|++ ..+++++.+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999874 789999999999999 77888887775311 0126789999999997 689999888 5999999
Q ss_pred CCCCCccccCCCccc-CCCcceeEEEEcC-CCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCC
Q psy12802 252 SPSKSVWEEQPNKTI-PNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK 329 (1637)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~~~i~~l~~sp-dg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (1637)
...... ..... .|...|.+++|+| ++++|++++.||.|++||+.+++.+..
T Consensus 248 ~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~----------------------- 300 (416)
T 2pm9_A 248 RNANTP----LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ----------------------- 300 (416)
T ss_dssp TSTTSC----SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE-----------------------
T ss_pred CCCCCC----cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee-----------------------
Confidence 875321 12222 5778999999999 999999999999999999975543211
Q ss_pred CceeEEecccCceeeEEEEecCc-eEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEE
Q psy12802 330 GRGVILKSQYGYEITDVAIMGND-RYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIE 407 (1637)
Q Consensus 330 ~~~~~~~~~~~~~i~~v~~s~~~-~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 407 (1637)
...+...|++++|+|++ .++++ +.|+.|++||+.+.......-. .. ..........|.++.. +..
T Consensus 301 ------~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~-~~~ 367 (416)
T 2pm9_A 301 ------FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE-----TE-TKQQESETDFWNNVSR-EES 367 (416)
T ss_dssp ------EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------------------------C
T ss_pred ------ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccc-----cc-ccccCCcccccccccc-ccc
Confidence 11123378999999997 67666 7789999999977553321100 00 0000001111221111 000
Q ss_pred ecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhh
Q psy12802 408 YGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 473 (1637)
Q Consensus 408 ~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~ 473 (1637)
.+. +..+.| .....+...+++++|||||++|++|+.||.|+||+...
T Consensus 368 ~~~--------~~~~~~-----------~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 368 KEK--------PSVFHL-----------QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CSC--------CCSSCC-----------CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccc--------cccccc-----------cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 000 011111 12224567788999999999999999999999999753
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.6e-31 Score=327.19 Aligned_cols=321 Identities=12% Similarity=0.064 Sum_probs=252.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc------ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEe
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVIC 86 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~ 86 (1637)
.++.++|||+|++|++++.|+.|++||..++.. ...+....|+|++++|++|+.||.|++||+.++ ....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ceee
Confidence 345789999999999999999999999986542 244555678999999999999999999999874 5555
Q ss_pred eccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCC
Q psy12802 87 NKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTED 164 (1637)
Q Consensus 87 ~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~ 164 (1637)
...+|...|++++|+|+++ +++++.|++|++||+.+++. ..+.+|...|.+++|+|+++.|++++.||+|++||+++.
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 5668999999999999999 99999999999999999887 888999999999999999999999999999999999874
Q ss_pred CCccccccccccc---CCCCc---------------------EEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeecc
Q psy12802 165 ASNFDQQQGRVVQ---HPVPP---------------------YALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYT 217 (1637)
Q Consensus 165 ~~g~~~~~~~~~~---~~~~v---------------------~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~ 217 (1637)
+.+..+.. |...+ .+++|+|+ .+++++.||.|++|| .+++.+..+..
T Consensus 214 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 287 (420)
T 3vl1_A 214 -----TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS- 287 (420)
T ss_dssp -----EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred -----ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-
Confidence 44444443 33444 44555663 889999999999999 77777776653
Q ss_pred CCCCCCccEEEEEECCCCC-EEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEE
Q psy12802 218 APHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 295 (1637)
Q Consensus 218 ~~~~~~~~i~~~~~sp~g~-~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~i 295 (1637)
.|...+.+++|+|++. +|++++.|+ |++||+....... ......+...|.++.| |++++|++++.||.|++
T Consensus 288 ---~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 288 ---KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV---GEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL 360 (420)
T ss_dssp ---TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred ---ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch---hhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence 3677899999999999 999999999 9999998754310 0111225567888755 57889999999999999
Q ss_pred EEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce----EEEEeCCCcEEEeeccc
Q psy12802 296 FESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR----YLVARTPDTLLLGDLHR 370 (1637)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~----~lv~~~~~~i~i~d~~~ 370 (1637)
|++....... .+ ..+. ....+ ......|.+++|+|++. +++++.++.+.+|+++.
T Consensus 361 w~~~~~~~~~------------~~--~~~~-----~~~~~-~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 361 DIISDPESER------------PA--IEFE-----TPTFL-VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCTTCCS------------CE--ECTT-----SCEEE-CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EeccCCCCCc------------cc--eecc-----CccEE-ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9986432110 00 0000 11112 22334799999999976 77779999999998753
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-30 Score=306.32 Aligned_cols=290 Identities=14% Similarity=0.153 Sum_probs=217.4
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeec-cC-CCCCEEEEEEcCCCC-EEEEeCCCcEEEEEc
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK-FI-QQCPVTTMVWLADGP-IIYGQSDGKIKAAHV 120 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~~-~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~ 120 (1637)
.|...|++++|+|+ +|++|+.|++|++|++..+. ....... .+ |...|.+++|+|+++ +++++.|++|++||+
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 58899999999998 99999999999999997631 2223222 33 999999999999999 999999999999998
Q ss_pred CCC-------ce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCC-CcccccccccccCCCCcEEEEecCC-
Q psy12802 121 KAN-------KT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDA-SNFDQQQGRVVQHPVPPYALSWPAG- 190 (1637)
Q Consensus 121 ~~~-------~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~-~g~~~~~~~~~~~~~~v~~~~~~~~- 190 (1637)
.+. +. ..+.+|...|.+++|+|+|++|++|+.|++|++||+.... .. .++..+.+|...|.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~--~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY--ECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC--EEEEEECCCSSCEEEEEECSSS
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe--EEEEEeccCCCceEEEEECCCC
Confidence 532 23 5678999999999999999999999999999999995432 11 456678899999999999984
Q ss_pred -eEEEEecCCeEEEEe-CCC--ceeEEeeccCCCCCCccEEEEEECCC--CCEEEEEecCc-EEEEEeCCCCC----ccc
Q psy12802 191 -YILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-IKLFAWSPSKS----VWE 259 (1637)
Q Consensus 191 -~l~~~~~d~~i~iwd-~~~--~~~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~d~-i~i~~~~~~~~----~~~ 259 (1637)
.|++++.|++|++|| .++ +++..+. .|...|.+++|+|+ +..|++++.|+ |++|++..... .|.
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEcc-----CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 899999999999999 444 5666666 46779999999999 77999999999 99999875421 111
Q ss_pred cCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEeccc
Q psy12802 260 EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQY 339 (1637)
Q Consensus 260 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 339 (1637)
........|...|.+++|+|++ .|++++.||+|++||..++... ... .....+.
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~--------------~~~-----------~~~~~h~ 294 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK--------------VFA-----------KRALCHG 294 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE--------------EEE-----------EESCTTT
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE--------------EEe-----------ccccccc
Confidence 1111112367899999999766 7999999999999998543210 000 0001122
Q ss_pred CceeeEEEEec--CceEEEE-eCCCcEEEeeccc
Q psy12802 340 GYEITDVAIMG--NDRYLVA-RTPDTLLLGDLHR 370 (1637)
Q Consensus 340 ~~~i~~v~~s~--~~~~lv~-~~~~~i~i~d~~~ 370 (1637)
...|++++|+| +++++++ +.|++|++||+.+
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33799999999 5666655 8899999999764
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=4.5e-30 Score=305.98 Aligned_cols=280 Identities=13% Similarity=0.135 Sum_probs=234.5
Q ss_pred CCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEECCCCCeEEEEECCCeEEEEE
Q psy12802 8 DVSSNVLQDDVFNLD-IVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYK 74 (1637)
Q Consensus 8 ~~~~~~i~~~~~spd-g~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~spd~~~la~~~~d~~i~iw~ 74 (1637)
..|...|++++|+|+ +++|+||+.|++|++||+.+++ |...|++++|+|+|++|++++.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 469999999999998 6899999999999999987543 688999999999999999999999999999
Q ss_pred cCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEecCC--CeEEE
Q psy12802 75 LGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRG--AGVLS 149 (1637)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~~g--~~l~s 149 (1637)
.... ........+...+..+.++|++. +++++.|+.+++||+..... ....+|...+.+++|++++ ..+++
T Consensus 115 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 115 LTTG----TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp TTTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred eccc----ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence 9874 44445556788999999999999 99999999999999987765 5567899999999999875 45889
Q ss_pred EeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccE
Q psy12802 150 GHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREF 226 (1637)
Q Consensus 150 ~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i 226 (1637)
++.|++|++||+.+. .....+.+|..+|.+++|+|+ .+++|+.|+.|++|| .+++.+..+.. ...+
T Consensus 191 ~~~d~~i~i~d~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~------~~~v 259 (340)
T 4aow_A 191 CGWDKLVKVWNLANC-----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG------GDII 259 (340)
T ss_dssp EETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------SSCE
T ss_pred EcCCCEEEEEECCCC-----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC------CceE
Confidence 999999999999874 677888899999999999984 899999999999999 77888877763 3469
Q ss_pred EEEEECCCCCEEEEEecCcEEEEEeCCCCCccccC----CCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccc
Q psy12802 227 TVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQ----PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 302 (1637)
Q Consensus 227 ~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~ 302 (1637)
.+++|+|++.+++++....|++||+.......... ......|...|++++|+|||++|++|+.||.|++||+.+|.
T Consensus 260 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 260 NALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999887766554339999988654332211 11223467799999999999999999999999999998764
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=5.8e-30 Score=304.69 Aligned_cols=270 Identities=11% Similarity=0.125 Sum_probs=234.2
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEECCCCCeEEEEECCCeEEEEEcC
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLG 76 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~ 76 (1637)
.|...|++++|+|+|+++++++ |+.|++||+.+++ |...|++++|+|++++|++++.||.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 5788999999999999999999 9999999997653 67789999999999999999999999999998
Q ss_pred CCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCC
Q psy12802 77 DDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADG 154 (1637)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 154 (1637)
++ ..........|...|.+++|+|+++ +++++.||.|++||+++++. ..+.+|...|.+++|+|+++.|++++.||
T Consensus 128 ~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 128 AP--TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CC--CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 74 2234445567899999999999999 99999999999999999987 78888999999999999999999999999
Q ss_pred cEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEEC
Q psy12802 155 SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 232 (1637)
Q Consensus 155 ~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 232 (1637)
.|++||+++. ..... ..+..++.+++|+|+ .+++++.++.|++||........+. .|...+.+++|+
T Consensus 206 ~i~~~d~~~~-----~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~v~~~~~~ 274 (337)
T 1gxr_A 206 TVRSWDLREG-----RQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-----LHESCVLSLKFA 274 (337)
T ss_dssp EEEEEETTTT-----EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-----CCSSCEEEEEEC
T ss_pred cEEEEECCCC-----ceEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc-----CCccceeEEEEC
Confidence 9999999873 33333 357889999999984 8899999999999994333334444 467789999999
Q ss_pred CCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEc
Q psy12802 233 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 233 p~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
|+|+.+++++.++ |++|++...... ....+...|.++.|+|++++|++++.||.|++|++
T Consensus 275 ~~~~~l~~~~~dg~i~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 275 YCGKWFVSTGKDNLLNAWRTPYGASI------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEE------EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEecCCCcEEEEECCCCeEE------EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999 999999876543 33456778999999999999999999999999997
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=2.1e-30 Score=319.08 Aligned_cols=330 Identities=14% Similarity=0.075 Sum_probs=254.3
Q ss_pred ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK 124 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~ 124 (1637)
...+++++|+|+|++|++++.||.|++||+.++ ........| ..+....|+|+++ +++++.||.|++||+.+++
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~----~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR----DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEECCSE----ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEeccc----ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence 345668999999999999999999999999874 222222223 4445557899999 9999999999999999998
Q ss_pred e-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeE
Q psy12802 125 T-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIV 201 (1637)
Q Consensus 125 ~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i 201 (1637)
. ..+.+|...|.+++|+|+++.|++|+.||+|++||+.+. ..+..+.+|...|.+++|+|+ .+++++.|+.|
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 8 556799999999999999999999999999999999874 677888899999999999984 89999999999
Q ss_pred EEEe-CCCceeEEeeccCCCCCCcc---------------------EEEEEECCCCCEEEEEecCc-EEEEEeCCCCCcc
Q psy12802 202 TIYE-SDGRVHRIFDYTAPHYKERE---------------------FTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVW 258 (1637)
Q Consensus 202 ~iwd-~~~~~~~~~~~~~~~~~~~~---------------------i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~ 258 (1637)
++|| .+++.+..+..+.. +... +.+++|+|+|+.|++++.|+ |++||+.......
T Consensus 206 ~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKEN--PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp EEEETTTTEEEEEECBTTB--TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEeECCCCceeEEeecCCC--CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 9999 78888888875432 3333 44455689999999999999 9999998765432
Q ss_pred ccCCCcccCCCcceeEEEEcCCCC-EEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEec
Q psy12802 259 EEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS 337 (1637)
Q Consensus 259 ~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 337 (1637)
.....|...|.+++|+|++. +|++|+.||.|++||+.+++. ....+..
T Consensus 284 ----~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---------------------------~~~~~~~ 332 (420)
T 3vl1_A 284 ----QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---------------------------PVGEFLI 332 (420)
T ss_dssp ----EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------------------------CSEEEEE
T ss_pred ----EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------------------------chhhhhc
Confidence 12234667899999999999 999999999999999965431 1122223
Q ss_pred ccCceeeEEEEecCceEEEE-eCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeee
Q psy12802 338 QYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTC 416 (1637)
Q Consensus 338 ~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (1637)
+.+..|+.+.+. +++++++ +.|++|++||+........... . ...
T Consensus 333 ~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------------------~-~~~------------- 378 (420)
T 3vl1_A 333 NEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAIE-------------------F-ETP------------- 378 (420)
T ss_dssp STTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCCSCEEC-------------------T-TSC-------------
T ss_pred cCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCCCcccee-------------------c-cCc-------------
Confidence 344578888665 5555555 7789999999865321100000 0 000
Q ss_pred eeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCC---eEEeeccCCcEEEehh
Q psy12802 417 VSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS---RIACGGLCGSVELFES 471 (1637)
Q Consensus 417 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~---~la~g~~dg~v~lw~~ 471 (1637)
.....+.+.|.+++|+|||+ .+++++.+|.+.+|+.
T Consensus 379 -------------------~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 379 -------------------TFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp -------------------EEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred -------------------cEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 01225667899999999999 7888888999999985
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=2.2e-30 Score=339.83 Aligned_cols=278 Identities=14% Similarity=0.192 Sum_probs=234.0
Q ss_pred cCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCC------------CcccceEEEEECCCCCeEEEEECCCeEEEE
Q psy12802 7 TDVSSNVLQDDVFNLDI-VRLRSEGNVAGIWAWRGQNG------------RKSYVVKGLAFSPDSTKLAVAQSDNIIFIY 73 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg-~~la~~~~d~~i~vwd~~~~------------~h~~~V~~~~~spd~~~la~~~~d~~i~iw 73 (1637)
...|...|++++|+|++ .+|++|+.|++|++|++.+. .|...|++++|+|+|++|++|+.||+|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 45799999999999975 79999999999999998653 288899999999999999999999999999
Q ss_pred EcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeee----cccCCcEEEEEEecCC--Ce
Q psy12802 74 KLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTL----YASNSFVVALCLNVRG--AG 146 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~----~~~~~~v~~l~~s~~g--~~ 146 (1637)
|+.++ ..+....+|...|.+++|+|+++ +++++.|++|++||..+.....+ .+|...|.+++|+|++ ..
T Consensus 458 d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 458 DLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp ETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred ECCCC----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 99874 45556678999999999999999 99999999999999876654333 4788999999999987 57
Q ss_pred EEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCC
Q psy12802 147 VLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKE 223 (1637)
Q Consensus 147 l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~ 223 (1637)
+++|+.||+|++||+++. .....+.+|...|.+++|+|+ .+++|+.||+|++|| .+++.+..+. +.
T Consensus 534 l~s~s~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~------~~ 602 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNC-----KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE------AN 602 (694)
T ss_dssp EEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB------CS
T ss_pred EEEEeCCCeEEEEECCCC-----cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec------CC
Confidence 999999999999999873 667788899999999999984 899999999999999 7888777665 34
Q ss_pred ccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCCC--------------cccCCCcceeEEEEcCCCCEEEEEec
Q psy12802 224 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPN--------------KTIPNLYTISALSWKRDGSRIACGGL 289 (1637)
Q Consensus 224 ~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~--------------~~~~~~~~i~~l~~spdg~~l~~~~~ 289 (1637)
..+.+++|+|++.++++++.++|++||+............ ....+...+++++|||||++|++|+.
T Consensus 603 ~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 4699999999999999988777999999875432111000 00111224789999999999999999
Q ss_pred CCcEEEEEcc
Q psy12802 290 CGSVELFESV 299 (1637)
Q Consensus 290 dg~v~iwd~~ 299 (1637)
||+|++|++.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999983
No 52
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=1e-29 Score=298.03 Aligned_cols=280 Identities=19% Similarity=0.249 Sum_probs=232.6
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcC
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVK 121 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~ 121 (1637)
.+|...|++++|+|++++|++++.||.|++|++.++ +......+|...|.+++|+|+++ +++++.|+.|++||+.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence 358899999999999999999999999999999774 44555668999999999999999 9999999999999999
Q ss_pred CCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecC
Q psy12802 122 ANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSD 198 (1637)
Q Consensus 122 ~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 198 (1637)
+++. ..+.+|...|.+++|+|+++.|++|+.||+|++||+++. ..+..+..|..+|.++.|+|+ .+++++.|
T Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----EEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 9988 888999999999999999999999999999999999873 667788899999999999984 89999999
Q ss_pred CeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCC---ccee
Q psy12802 199 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL---YTIS 273 (1637)
Q Consensus 199 ~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~---~~i~ 273 (1637)
|.|++|| .+++.+..+.. .+...+..++|+|+|+++++++.|+ |++||+........ ...+. ..+.
T Consensus 171 ~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~ 241 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLID----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-----YTGHKNEKYCIF 241 (312)
T ss_dssp SCEEEEETTTCCEEEEECC----SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-----ECSSCCSSSCCC
T ss_pred CcEEEEECCCCceeeEEec----cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-----EEecCCceEEEE
Confidence 9999999 77887776653 3556799999999999999999999 99999987553211 11122 1233
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce
Q psy12802 274 ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 353 (1637)
Q Consensus 274 ~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 353 (1637)
.....+++.+|++|+.||.|++||+.+++.+.. ...+...|.+++|+|++.
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-----------------------------~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK-----------------------------LQGHTDVVISTACHPTEN 292 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEEE-----------------------------ECCCSSCEEEEEECSSSS
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhhh-----------------------------hhccCCcEEEEeecCcCC
Confidence 334457889999999999999999975543211 111223789999999988
Q ss_pred EEEEe---CCCcEEEeecc
Q psy12802 354 YLVAR---TPDTLLLGDLH 369 (1637)
Q Consensus 354 ~lv~~---~~~~i~i~d~~ 369 (1637)
+++++ .|++|++|+.+
T Consensus 293 ~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECTTTCCEEEEECC
T ss_pred ceEEEEccCCccEEEecCC
Confidence 88874 48999999853
No 53
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.8e-32 Score=319.80 Aligned_cols=257 Identities=10% Similarity=0.029 Sum_probs=204.7
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC----cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEe
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR----KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVIC 86 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~----h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~ 86 (1637)
...|.+++|||||+++|+++.|++|+ |.++++ |...|.+++|+|+| .++.+.+|+.... . .
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----~-~- 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----G-L- 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----C-S-
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc----e-E-
Confidence 46789999999999999999999999 766554 89999999999999 4666555554321 1 1
Q ss_pred eccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCC-----cEEEEEEecCCCeEEEEeCCCcEEEEE
Q psy12802 87 NKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNS-----FVVALCLNVRGAGVLSGHADGSIVRYY 160 (1637)
Q Consensus 87 ~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~-----~v~~l~~s~~g~~l~s~~~dg~i~iwd 160 (1637)
....|...|.+++|||+|. +++++.||.|++||.++ ....+. |.. .|.+++|||||+.|++|+.||+|++||
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 1225688999999999999 99999999999999655 334455 665 499999999999999999999999999
Q ss_pred ecCCCCcccc----ccccc----ccCCCCcEEEEecCCeEEEEecCCeEEEEeCCCce----eEEeeccCCCCCCccEEE
Q psy12802 161 VTEDASNFDQ----QQGRV----VQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRV----HRIFDYTAPHYKEREFTV 228 (1637)
Q Consensus 161 ~~~~~~g~~~----~~~~~----~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~ 228 (1637)
+.....+ . .+.++ .+|...|.+++|+|+.+++++.|++|++||..++. .+++.. .|...|.+
T Consensus 158 ~~~~~l~--~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~----~h~~~V~s 231 (588)
T 2j04_A 158 IRKNSEN--TPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQN----ASRRKITD 231 (588)
T ss_dssp CCCCTTT--CCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEEC----CCSSCCCC
T ss_pred CCCCccc--cccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecc----cccCcEEE
Confidence 9874210 0 13444 67889999999999778899999999999944433 234532 35568999
Q ss_pred EEECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEEE--cCCCCEEEEEecCCcEEEEEc
Q psy12802 229 ACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 229 ~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdg~~l~~~~~dg~v~iwd~ 298 (1637)
++|+ |+.+++++...|++|+....... ....+|...|..+.| +||+..+++++.+|+ ++|..
T Consensus 232 vaFs--g~~LASa~~~tIkLWd~~~~~~~-----~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 232 LKIV--DYKVVLTCPGYVHKIDLKNYSIS-----SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEE--TTEEEEECSSEEEEEETTTTEEE-----EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEE--CCEEEEEeCCeEEEEECCCCeEE-----EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9999 68999998534999998865541 223368889999999 999999999999999 99997
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=4.6e-30 Score=310.33 Aligned_cols=286 Identities=11% Similarity=0.100 Sum_probs=239.0
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC
Q psy12802 7 TDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR---------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~---------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~ 77 (1637)
...|...|++++|+|||++|++++.++.|++||..+++ |...|++++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34588999999999999999999999999999998773 788999999999999999999999999999977
Q ss_pred CCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc----e-eeecccCCcEEEEEEecCCCeEEEEe
Q psy12802 78 DWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK----T-QTLYASNSFVVALCLNVRGAGVLSGH 151 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~----~-~~~~~~~~~v~~l~~s~~g~~l~s~~ 151 (1637)
+ ..........|...|.+++|+|+++ +++++.|+.|++||+.++. . ....+|...|.+++|+|+++.|++++
T Consensus 84 ~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 R--TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp T--EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred C--eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 4 1122333457899999999999999 9999999999999999886 2 33467899999999999999999999
Q ss_pred CCCcEEEEEecCC---------------CCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEE
Q psy12802 152 ADGSIVRYYVTED---------------ASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRI 213 (1637)
Q Consensus 152 ~dg~i~iwd~~~~---------------~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~ 213 (1637)
.||.|++||+... ..+ ..+..+..|...|.+++|+|+ .+++++.|+.|++|| .+++++..
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFG--ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTT--CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchh--hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 9999999997521 112 566677789999999999884 899999999999999 78999988
Q ss_pred eeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccC-------------------------------
Q psy12802 214 FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ------------------------------- 261 (1637)
Q Consensus 214 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~------------------------------- 261 (1637)
+.. +...+.+++|+|+|.+++++ .|+ |++|++....+.|...
T Consensus 240 ~~~-----~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 240 LAS-----ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp EEC-----SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred Ecc-----CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 884 55689999999999999888 666 9999998722211100
Q ss_pred -----CCcccCCCcceeEEEEc-CCC---CEEEEEecCCcEEEEEccccc
Q psy12802 262 -----PNKTIPNLYTISALSWK-RDG---SRIACGGLCGSVELFESVLKR 302 (1637)
Q Consensus 262 -----~~~~~~~~~~i~~l~~s-pdg---~~l~~~~~dg~v~iwd~~~~~ 302 (1637)
......|...|++++|+ ++| ++|++|+.||.|++|++.+++
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 11113678899999966 677 999999999999999997654
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.1e-30 Score=312.57 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=232.5
Q ss_pred eecCCCCCceeEEEEcCC----CCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEECCC----CCeEEEE
Q psy12802 5 KYTDVSSNVLQDDVFNLD----IVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAFSPD----STKLAVA 64 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spd----g~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~spd----~~~la~~ 64 (1637)
.+...|...|++++|+|+ ...+++++.++.|++||..+++ |...|++++|+|+ +++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455679999999999994 4566666667799999998654 4577999999999 6799999
Q ss_pred ECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcC-CCC-EEEEeCCCcEEEEEcCCCce-eee---cccCCcEEEE
Q psy12802 65 QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA-DGP-IIYGQSDGKIKAAHVKANKT-QTL---YASNSFVVAL 138 (1637)
Q Consensus 65 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~-l~~~~~d~~v~vwd~~~~~~-~~~---~~~~~~v~~l 138 (1637)
+.||.|++||+.++ +.+....+|...|++++|+| ++. +++++.||.|++||+++++. ..+ .+|...|.++
T Consensus 92 ~~dg~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 92 GSRGIIRIINPITM----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp ETTCEEEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred cCCCEEEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 99999999999874 44555667999999999999 888 99999999999999999987 555 6899999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc----------------------------cCCCCcEEEEecCC
Q psy12802 139 CLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV----------------------------QHPVPPYALSWPAG 190 (1637)
Q Consensus 139 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~----------------------------~~~~~v~~~~~~~~ 190 (1637)
+|+|+++.|++++.||.|++||+++. .....+. .|...|.++.|+++
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSK-----RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD 242 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSH-----HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETT
T ss_pred EECCCCCEEEEecCCCCEEEEECCCC-----ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCC
Confidence 99999999999999999999999863 3333333 29999999999988
Q ss_pred eEEEEecCCeEEEEe-CCCce--------------eEEeeccCCCCCCccEEEEEECCC--CCEEEEEecCc-EEEEEeC
Q psy12802 191 YILAAGSDRIVTIYE-SDGRV--------------HRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-IKLFAWS 252 (1637)
Q Consensus 191 ~l~~~~~d~~i~iwd-~~~~~--------------~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~d~-i~i~~~~ 252 (1637)
.+++++.|+.|++|| .++.. +..+. .|...|++++|+|+ |++|++++.|+ |++|++.
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-----YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-----CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-----ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 999999999999999 55433 55555 35668999999999 99999999999 9999998
Q ss_pred CCCCccccCCCcccCC--CcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 253 PSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 253 ~~~~~~~~~~~~~~~~--~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
........ ......| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 318 ~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAK-CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCcccc-ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 76542100 0112223 6799999999999999999999999999984
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.7e-30 Score=319.91 Aligned_cols=286 Identities=14% Similarity=0.139 Sum_probs=221.0
Q ss_pred CCCCceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC---------cccceEEEEECC-CCCeEEEEECCCeEEEEEcCC
Q psy12802 9 VSSNVLQDDVFNL-DIVRLRSEGNVAGIWAWRGQNGR---------KSYVVKGLAFSP-DSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 9 ~~~~~i~~~~~sp-dg~~la~~~~d~~i~vwd~~~~~---------h~~~V~~~~~sp-d~~~la~~~~d~~i~iw~~~~ 77 (1637)
.|...|++++||| ++.+||+|+.||+|+|||+.++. |...|++++|+| ++++|++|+.||+|++||+.+
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 4667899999999 56899999999999999987543 888999999998 689999999999999999976
Q ss_pred CCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCC-eEEEEeCCCc
Q psy12802 78 DWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGA-GVLSGHADGS 155 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~-~l~s~~~dg~ 155 (1637)
+ ..........+...+.+++|+|++. +++|+.||.|++||+++.....+.+|...|.+++|+|+++ .|++|+.|++
T Consensus 197 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 197 N--ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp C--EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred C--ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 3 1222323333456788999999999 9999999999999998777788999999999999999987 5789999999
Q ss_pred EEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCC-CCCCccEEEEEE
Q psy12802 156 IVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAP-HYKEREFTVACS 231 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~-~~~~~~i~~~~~ 231 (1637)
|++||++..... .......+|..+|.+++|+|+ .|++++.||.|++|| .++.....+..+.. ......+....|
T Consensus 275 v~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 275 VKIWDLRQVRGK--ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp CCEEETTTCCSS--SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred eeEEeccccccc--ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 999999875321 233445689999999999984 899999999999999 77777766654322 011112334566
Q ss_pred CCCCCEEEEEec-----------C-c-EEEEEeCCCCCccccCCCcccCCCcceeEE-EEcCCCCEEEEEecCCcEEEEE
Q psy12802 232 SPSGQAVVVGSY-----------D-N-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL-SWKRDGSRIACGGLCGSVELFE 297 (1637)
Q Consensus 232 sp~g~~l~~~~~-----------d-~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~spdg~~l~~~~~dg~v~iwd 297 (1637)
+|++..+++++. + + |++||..++.... .....|...|.++ +|+|+|.+|++|+ |++|+||+
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~----~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC----QLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS 427 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE----EECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE----EEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence 777766666542 2 3 8999987765431 1122455677777 6999999999876 88999999
Q ss_pred ccccce
Q psy12802 298 SVLKRT 303 (1637)
Q Consensus 298 ~~~~~~ 303 (1637)
+.+++.
T Consensus 428 ~~~gk~ 433 (435)
T 4e54_B 428 QQEART 433 (435)
T ss_dssp CC----
T ss_pred CCcCee
Confidence 976653
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.9e-29 Score=305.60 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=223.4
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCC------------------CCCEEEEEEcCCCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ------------------QCPVTTMVWLADGP 105 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------------------~~~v~~v~~s~~~~ 105 (1637)
.|...|++++|||||++||+|+ ++.+++|++.++ ..+.....| ...|++++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC----CEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC----CEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 3889999999999999999876 689999999875 222222222 23499999999999
Q ss_pred -EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcE
Q psy12802 106 -IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPY 183 (1637)
Q Consensus 106 -l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~ 183 (1637)
+++|+.|++|++||+.+++. ..+.+|...|.+++|+|+|+.|++|+.|++|++||+++. .+...+ .+...+.
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~-~~~~~v~ 210 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-----QCSLTL-SIEDGVT 210 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----EEEEEE-ECSSCEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-----eeEEEE-EcCCCcE
Confidence 99999999999999999988 788999999999999999999999999999999999873 343333 4667899
Q ss_pred EEEecC---CeEEEEecCCeEEEEe-CCCceeEEeeccCC--CCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCC
Q psy12802 184 ALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAP--HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS 256 (1637)
Q Consensus 184 ~~~~~~---~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~ 256 (1637)
+++|+| ..+++|+.|+.|++|| .++..+..+..... ..|...|.+++|+|+|+.|++++.|+ |++||+.....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 999987 3899999999999999 77887777642211 14778999999999999999999999 99999876432
Q ss_pred ccccC-------CCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCC
Q psy12802 257 VWEEQ-------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK 329 (1637)
Q Consensus 257 ~~~~~-------~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (1637)
..... ......|...|.+++|+|++.+|++|+.||.|++||..+++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~------------------------ 346 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL------------------------ 346 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE------------------------
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE------------------------
Confidence 11100 01223577789999999999999999999999999997654321
Q ss_pred CceeEEecccCceeeEEEEec------CceEEEE-eCCCcEEEeeccc
Q psy12802 330 GRGVILKSQYGYEITDVAIMG------NDRYLVA-RTPDTLLLGDLHR 370 (1637)
Q Consensus 330 ~~~~~~~~~~~~~i~~v~~s~------~~~~lv~-~~~~~i~i~d~~~ 370 (1637)
.+. .+...|.+++|+| ++.++++ +.|++|+||++..
T Consensus 347 ----~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 347 ----MLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----EEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----EEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 111 1223688888875 5666666 7899999999754
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.8e-29 Score=299.16 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=236.4
Q ss_pred CCcccceEEEEECCC-CCeEEEEECCCeEEEEEcCCCCCC-ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEE
Q psy12802 43 GRKSYVVKGLAFSPD-STKLAVAQSDNIIFIYKLGDDWGD-KKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAH 119 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd-~~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd 119 (1637)
.+|.+.|++|+|+|+ +++|+||+.|++|+|||+...... ........+|...|.+++|+|+|+ +++++.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 359999999999998 689999999999999999875322 223445568999999999999999 99999999999999
Q ss_pred cCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC----eEEE
Q psy12802 120 VKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG----YILA 194 (1637)
Q Consensus 120 ~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~----~l~~ 194 (1637)
...+.. .....+...+..+.+++++..|++|+.|+.+++||..... .......+|...+..+.|+++ .+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC----KYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE----EEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc----eEEEEeccccCcccceEEccCCCCcEEEE
Confidence 999887 7777888899999999999999999999999999987532 344556789999999999762 6788
Q ss_pred EecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcce
Q psy12802 195 AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTI 272 (1637)
Q Consensus 195 ~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i 272 (1637)
++.|+.|++|| .+++.+..+. .|...|++++|+|+|++|++|+.|+ |++||+...... ..+.+...|
T Consensus 191 ~~~d~~i~i~d~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~~~~v 259 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------YTLDGGDII 259 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE------EEEECSSCE
T ss_pred EcCCCEEEEEECCCCceeeEec-----CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee------eeecCCceE
Confidence 99999999999 7788888877 4667999999999999999999999 999998875542 334455689
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCc
Q psy12802 273 SALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 352 (1637)
Q Consensus 273 ~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 352 (1637)
.++.|+|++. +++++.||.|++||+.++......+ .. ............|++++|+|++
T Consensus 260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~-----------------~~---~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELK-----------------QE---VISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEEC-----------------CC----------CCCCCEEEEEECTTS
T ss_pred EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEecc-----------------cc---ceeeeccCCCCCEEEEEECCCC
Confidence 9999999886 5556779999999997654432211 00 0111111233479999999998
Q ss_pred eEEEE-eCCCcEEEeeccccc
Q psy12802 353 RYLVA-RTPDTLLLGDLHRNL 372 (1637)
Q Consensus 353 ~~lv~-~~~~~i~i~d~~~~~ 372 (1637)
+++++ +.|+.|+|||+.+|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 88777 789999999998764
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=303.71 Aligned_cols=276 Identities=13% Similarity=0.217 Sum_probs=237.0
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 8 ~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
..|...|++++|+|||++|++++.|+.|++||+.+++ |...|++++|+|++++|++++.||.|++||+.++
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-- 106 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-- 106 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--
Confidence 4688999999999999999999999999999998766 7889999999999999999999999999999875
Q ss_pred CceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC-----CcEEEEEcCCCce------------eeecccCC--cEEEEEE
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD-----GKIKAAHVKANKT------------QTLYASNS--FVVALCL 140 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d-----~~v~vwd~~~~~~------------~~~~~~~~--~v~~l~~ 140 (1637)
+.+... .+...|.+++|+|+++ +++++.+ +.|.+||+.++.. ..+..|.. .+.+++|
T Consensus 107 --~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 107 --QCVATW-KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp --CEEEEE-ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred --cEEEEe-ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 233222 3888999999999999 8899888 9999999987642 34455655 8999999
Q ss_pred ecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeecc
Q psy12802 141 NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYT 217 (1637)
Q Consensus 141 s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~ 217 (1637)
+|+++.|++++.||.|++||+.+.. .....+..|...|.+++|+|+ .+++++.|+.|++|| .+++.+..+.
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-- 257 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-- 257 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--
Confidence 9999999999999999999998742 567788889999999999984 899999999999999 7888888887
Q ss_pred CCCCCCccEEEEEECCCCCEEEEEecCc---------------EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCC
Q psy12802 218 APHYKEREFTVACSSPSGQAVVVGSYDN---------------IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS 282 (1637)
Q Consensus 218 ~~~~~~~~i~~~~~sp~g~~l~~~~~d~---------------i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 282 (1637)
+...+..++|+|+++.+++++.++ +++|+....... .....|...|.+++|+|+|+
T Consensus 258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSS
T ss_pred ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEECCCCC
Confidence 445799999999999999998775 677776655432 23345778999999999999
Q ss_pred EEEEEecCCcEEEEEccccce
Q psy12802 283 RIACGGLCGSVELFESVLKRT 303 (1637)
Q Consensus 283 ~l~~~~~dg~v~iwd~~~~~~ 303 (1637)
+|++++.||.|++|++..+..
T Consensus 329 ~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 329 SYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEEEEETTSEEEEEEECHHHH
T ss_pred EEEEEcCCCeEEEEECccccc
Confidence 999999999999999976543
No 60
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1.6e-29 Score=293.10 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=205.1
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEE
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAH 119 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd 119 (1637)
..|...|++++|+|+|++||+|+.|++|+|||+..+ ..+.+....+|.++|.+++|+|+ ++ +++++.|++|++||
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 458899999999999999999999999999999752 12344566789999999999864 77 99999999999999
Q ss_pred cCCCce---eeecccCCcEEEEEEecC--CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC----
Q psy12802 120 VKANKT---QTLYASNSFVVALCLNVR--GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG---- 190 (1637)
Q Consensus 120 ~~~~~~---~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---- 190 (1637)
+.+++. ..+.+|...|.+++|+|+ |..|++++.||+|++||++.... .....+.+|...|.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC---BCCEEEECCSSCEEEEEECCCC---
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc---eeeeeeecccCccceEeecCCcccc
Confidence 998753 567789999999999997 89999999999999999986432 224566789999999999984
Q ss_pred -----------eEEEEecCCeEEEEe-CCCc----eeEEeeccCCCCCCccEEEEEECCCC---CEEEEEecCc-EEEEE
Q psy12802 191 -----------YILAAGSDRIVTIYE-SDGR----VHRIFDYTAPHYKEREFTVACSSPSG---QAVVVGSYDN-IKLFA 250 (1637)
Q Consensus 191 -----------~l~~~~~d~~i~iwd-~~~~----~~~~~~~~~~~~~~~~i~~~~~sp~g---~~l~~~~~d~-i~i~~ 250 (1637)
.|++|+.|++|++|| .++. ....+. .|...|.+++|+|++ .+|++++.|+ |++|+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-----~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-----GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-----CCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 799999999999999 5554 444555 477799999999995 8999999999 99999
Q ss_pred eCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 251 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
++.....|.........+...|.+++|+|+|++|++++.||+|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9875433321112223456789999999999999999999999999975
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-30 Score=316.53 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=223.2
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--C-------cccceEEEEECCCCCeEEEEECCCeEEEEEcC
Q psy12802 6 YTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG--R-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLG 76 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~--~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~ 76 (1637)
....+...|++++|||||++|++++.|+.|++||+.++ + |...|++++|+|++++|++++.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34456778999999999999999999999999999876 2 78899999999999999999999999999998
Q ss_pred CCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc----eeeecc-cCCcEEEEEEecCCCeEEEE
Q psy12802 77 DDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK----TQTLYA-SNSFVVALCLNVRGAGVLSG 150 (1637)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~----~~~~~~-~~~~v~~l~~s~~g~~l~s~ 150 (1637)
++. ..........|...|.+++|+|+++ +++++.|+.|++||+++++ ...+.+ |...|.+++|+|+++.|+++
T Consensus 86 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDG-TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCC-ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 752 1123445667999999999999999 9999999999999999886 366777 99999999999999999999
Q ss_pred eCCCcEEEEEecCCC---------------CcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCce--
Q psy12802 151 HADGSIVRYYVTEDA---------------SNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRV-- 210 (1637)
Q Consensus 151 ~~dg~i~iwd~~~~~---------------~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~-- 210 (1637)
+.||+|++||+.... .+ .++..+ +|...|.+++|+|+ .+++++.||.|++|| .+++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFN--TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE--EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchh--hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 999999999996321 12 445555 89999999999984 899999999999999 66766
Q ss_pred --eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCc----cccC-----------------------
Q psy12802 211 --HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV----WEEQ----------------------- 261 (1637)
Q Consensus 211 --~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~----~~~~----------------------- 261 (1637)
+..+. .|...|.+++|+|+|++|++++.+++.+|+....... .+..
T Consensus 242 ~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (377)
T 3dwl_C 242 RALITVK-----LSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVS 316 (377)
T ss_dssp EECCCEE-----CSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----
T ss_pred eeeEeec-----CCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccc
Confidence 55666 4666899999999999999999888668877632200 0000
Q ss_pred --------------------CCcccCCCcceeEEEEcCCC-C---EEEEEecCCcEEEEEc
Q psy12802 262 --------------------PNKTIPNLYTISALSWKRDG-S---RIACGGLCGSVELFES 298 (1637)
Q Consensus 262 --------------------~~~~~~~~~~i~~l~~spdg-~---~l~~~~~dg~v~iwd~ 298 (1637)
......|...|+++.+.+++ . .|++++.||.|++||+
T Consensus 317 ~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 317 FTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00111277899999976644 3 5999999999999985
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.7e-29 Score=306.20 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=226.5
Q ss_pred cCCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCC---------cccceEEEEECC-CCCeEEEEECCCeEEEEEc
Q psy12802 7 TDVSSNVLQDDVFNLDI-VRLRSEGNVAGIWAWRGQNGR---------KSYVVKGLAFSP-DSTKLAVAQSDNIIFIYKL 75 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg-~~la~~~~d~~i~vwd~~~~~---------h~~~V~~~~~sp-d~~~la~~~~d~~i~iw~~ 75 (1637)
...|...|++++|+|+| ++|++++.|+.|++||+.++. |...|.+++|+| ++++|++++.|+.|++||+
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF 148 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence 35688999999999999 999999999999999998543 788999999999 7899999999999999999
Q ss_pred CCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCC-eEEEEeCC
Q psy12802 76 GDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGA-GVLSGHAD 153 (1637)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~-~l~s~~~d 153 (1637)
.+. ....+.....|...|.+++|+|+++ +++++.|+.|++||++......+.+|...|.+++|+|+++ .|++|+.|
T Consensus 149 ~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 149 SGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp TSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred CCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 852 2233333344568899999999999 9999999999999996555588899999999999999999 89999999
Q ss_pred CcEEEEEecCCCCcccccccccccCCCCcEEEEecC-C--eEEEEecCCeEEEEe-CCCceeEEeeccCCC--CC-----
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA-G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPH--YK----- 222 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~--~~----- 222 (1637)
++|++||+++.... ..++..+ +|...|.+++|+| + .+++++.|+.|++|| .+++....+..+... .+
T Consensus 227 ~~i~iwd~~~~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 227 ATVKLWDLRNIKDK-NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp SEEEEEEGGGCCST-TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred CEEEEEeCCCCCcc-cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 99999999874311 0233333 7999999999998 4 899999999999999 777766666543210 11
Q ss_pred -----CccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEE
Q psy12802 223 -----EREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF 296 (1637)
Q Consensus 223 -----~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iw 296 (1637)
...+..++|+|+|++ +++.|+ |++||+.++..... .....+...+..++|+|+|++|++|+ ||.|++|
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~---l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ---LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE---ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee---ecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence 134555677777766 667788 99999987664311 11112456778889999999999997 9999999
Q ss_pred Ecc
Q psy12802 297 ESV 299 (1637)
Q Consensus 297 d~~ 299 (1637)
|+.
T Consensus 379 ~~~ 381 (383)
T 3ei3_B 379 NRE 381 (383)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.6e-29 Score=329.65 Aligned_cols=302 Identities=14% Similarity=0.163 Sum_probs=233.6
Q ss_pred CcccceEEEEECCCC-CeEEEEECCCeEEEEEcCCCCCC-ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEc
Q psy12802 44 RKSYVVKGLAFSPDS-TKLAVAQSDNIIFIYKLGDDWGD-KKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHV 120 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~-~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~ 120 (1637)
.|.+.|++++|+|++ ++|+||+.|++|++|++...... ........+|...|.+++|+|+++ +++|+.||+|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 599999999999975 78999999999999999764221 233445668999999999999999 999999999999999
Q ss_pred CCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC----eEEEE
Q psy12802 121 KANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG----YILAA 195 (1637)
Q Consensus 121 ~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~----~l~~~ 195 (1637)
.+++. ..+.+|...|.+++|+|+++.|++|+.|++|++||....... .......+|...|.+++|+|+ .++++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY--TISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--EECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce--eeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 99987 888999999999999999999999999999999998642110 112233578999999999984 68999
Q ss_pred ecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCccee
Q psy12802 196 GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTIS 273 (1637)
Q Consensus 196 ~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (1637)
+.|++|++|| .+++....+. .|...|++++|+|+|++|++|+.|+ |++||+..+... ....+...|.
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~------~~~~~~~~v~ 606 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL------YSLEANSVIH 606 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE------ECCBCSSCEE
T ss_pred eCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE------EEecCCCcEE
Confidence 9999999999 7778887777 4667999999999999999999999 999999876543 2233456899
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce
Q psy12802 274 ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 353 (1637)
Q Consensus 274 ~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 353 (1637)
+++|+|++.++++++ ++.|++||+.+++.+...+. +........... ...........+++++|+|+++
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~spdg~ 675 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKV------DLKAEAEKADNS----GPAATKRKVIYCTSLNWSADGS 675 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECC------CCC--------------------CCCCEEEEEECTTSS
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcc------cccccccccccc----ccccCCceeEEeeeEEEcCCCC
Confidence 999999998877665 56699999987765433111 000000000000 0000011122478999999988
Q ss_pred EEEE-eCCCcEEEeecc
Q psy12802 354 YLVA-RTPDTLLLGDLH 369 (1637)
Q Consensus 354 ~lv~-~~~~~i~i~d~~ 369 (1637)
++++ +.|++|+|||+.
T Consensus 676 ~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 676 TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred EEEEEcCCCeEEEEecc
Confidence 8877 789999999975
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=7.6e-30 Score=314.05 Aligned_cols=291 Identities=15% Similarity=0.207 Sum_probs=218.9
Q ss_pred cccceEEEEECC-CCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcC-CCC-EEEEeCCCcEEEEEcC
Q psy12802 45 KSYVVKGLAFSP-DSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA-DGP-IIYGQSDGKIKAAHVK 121 (1637)
Q Consensus 45 h~~~V~~~~~sp-d~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~-l~~~~~d~~v~vwd~~ 121 (1637)
|...|++++|+| ++++||+|+.||+|+|||+.++ .........+|.+.|++++|+| ++. |++++.||+|++||++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~--~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK--DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC--SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC--CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 567899999999 5678999999999999999874 2334445668999999999998 567 9999999999999999
Q ss_pred CCceeeecc---cCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC---eEEEE
Q psy12802 122 ANKTQTLYA---SNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG---YILAA 195 (1637)
Q Consensus 122 ~~~~~~~~~---~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~ 195 (1637)
++....+.. +...+.+++|+|++.+|++|+.||+|++||++. ..+..+.+|...|.+++|+|+ .++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------KELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS------CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc------ceeEEEecccceEEeeeecCCCceEEEEe
Confidence 887644433 344678999999999999999999999999874 677888999999999999983 67889
Q ss_pred ecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCC-cccCCCcce
Q psy12802 196 GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN-KTIPNLYTI 272 (1637)
Q Consensus 196 ~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~-~~~~~~~~i 272 (1637)
+.|+.|++|| .+++....+.... .|...|++++|+|+|++|++++.|+ |++|++............ ........+
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSL--PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCC--BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred cCcceeeEEecccccccceEEEee--eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 9999999999 5555444333221 4778999999999999999999999 999999875543111100 001111233
Q ss_pred eEEEEcCCCCEEEEEe------------cCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccC
Q psy12802 273 SALSWKRDGSRIACGG------------LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG 340 (1637)
Q Consensus 273 ~~l~~spdg~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 340 (1637)
....|+|++..+++++ .++.|++||..+++.+.. +...+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~----------------------------l~~~~~ 399 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ----------------------------LYDPES 399 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE----------------------------ECCSSC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE----------------------------EeCCCC
Confidence 4556777777666654 235789999876543211 111222
Q ss_pred ceeeEE-EEecCceEEEEeCCCcEEEeeccccce
Q psy12802 341 YEITDV-AIMGNDRYLVARTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 341 ~~i~~v-~~s~~~~~lv~~~~~~i~i~d~~~~~~ 373 (1637)
..|.++ .|+|++.+++++++++|+|||+.+++.
T Consensus 400 ~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 400 SGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp CCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred CcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 356666 699999999999999999999987654
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-30 Score=317.56 Aligned_cols=309 Identities=12% Similarity=0.066 Sum_probs=218.6
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCC-----------cccceEEEEECCC------CCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 19 FNLDIVRLRSEGNVAGIWAWRGQNGR-----------KSYVVKGLAFSPD------STKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 19 ~spdg~~la~~~~d~~i~vwd~~~~~-----------h~~~V~~~~~spd------~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
.+|+++.+++++.|++|+||++.+++ |.+.|.+++|+|+ +.+||+++.||+|+|||+.++...
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 47899999999999999999987654 3578999999997 579999999999999999765211
Q ss_pred c-------eeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce--eeecccCCcEEEE--EEecCC-CeEEE
Q psy12802 82 K-------KVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT--QTLYASNSFVVAL--CLNVRG-AGVLS 149 (1637)
Q Consensus 82 ~-------~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l--~~s~~g-~~l~s 149 (1637)
. .......+|...|++++|+|++.|++|+.||+|++||++++.. ..+.+|...|.++ .|+|+| .+|+|
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 0 1112345789999999999865599999999999999998753 5688999999999 578888 89999
Q ss_pred EeCCCcEEEEEecCCCCcccccccccccCCC--CcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCc
Q psy12802 150 GHADGSIVRYYVTEDASNFDQQQGRVVQHPV--PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER 224 (1637)
Q Consensus 150 ~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~--~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~ 224 (1637)
|+.||+|++||+++. .+..++.+|.. .|.+++|+|+ .+++++.|++|++|| .++.++.++. +|..
T Consensus 329 ~S~D~tvklWD~~~~-----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-----gH~~ 398 (524)
T 2j04_B 329 VAVDGYFYIFNPKDI-----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-----SRET 398 (524)
T ss_dssp EETTSEEEEECGGGH-----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-----ECSS
T ss_pred eccCCeEEEEECCCC-----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-----cCCC
Confidence 999999999999873 55556666653 5889999994 788999999999999 7888877777 4666
Q ss_pred cEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCC-cccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccc
Q psy12802 225 EFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN-KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 302 (1637)
Q Consensus 225 ~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~ 302 (1637)
.|++++|||+|+.|++|+.|+ |++|+...+ .+..... ....+...+.+++|+|+|..+. ... .+.+|+...
T Consensus 399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~-- 471 (524)
T 2j04_B 399 TITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV-- 471 (524)
T ss_dssp CEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-----
T ss_pred ceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc--
Confidence 999999999999999999999 999997543 1110000 0011223578999999998442 211 222332210
Q ss_pred eeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCc---eEEEE-eCCCcEEEeeccc
Q psy12802 303 TIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND---RYLVA-RTPDTLLLGDLHR 370 (1637)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~---~~lv~-~~~~~i~i~d~~~ 370 (1637)
++ ..+.....++..|.+|+|+|++ .++++ +.++.|+||++..
T Consensus 472 ---~g-----------------------~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 472 ---ND-----------------------VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ------------------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ---CC-----------------------cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 00 1111111223479999999995 36666 5669999999865
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=312.08 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=215.8
Q ss_pred ecCCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEEcCC---C---------CcccceEEEEECCCCCeEEEEECCCeEEE
Q psy12802 6 YTDVSSNVLQDDVFNL-DIVRLRSEGNVAGIWAWRGQN---G---------RKSYVVKGLAFSPDSTKLAVAQSDNIIFI 72 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~sp-dg~~la~~~~d~~i~vwd~~~---~---------~h~~~V~~~~~spd~~~la~~~~d~~i~i 72 (1637)
+...|...|++++|+| ||.+|++|+.|++|++||+.+ + .|...|++++|+|++++|++++.||+|++
T Consensus 58 ~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 58 LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 3467889999999999 999999999999999999865 2 27889999999999999999999999999
Q ss_pred EEcC---CCCCCc----eeEe--eccC--CCCCEEEEE--EcCCCC-EEEEeCCCcEEEEEcCCCce-eeecc--cCCcE
Q psy12802 73 YKLG---DDWGDK----KVIC--NKFI--QQCPVTTMV--WLADGP-IIYGQSDGKIKAAHVKANKT-QTLYA--SNSFV 135 (1637)
Q Consensus 73 w~~~---~~~~~~----~~~~--~~~~--~~~~v~~v~--~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~--~~~~v 135 (1637)
||+. .+.... ..+. .... +...+.++. ++|++. +++++.|+.|++||+++++. ..+.+ |...|
T Consensus 138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v 217 (437)
T 3gre_A 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAV 217 (437)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCE
T ss_pred EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCce
Confidence 9995 221000 0000 0111 566778877 668888 99999999999999999988 77776 89999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc-cCCCCcEEEEecCC------eEEEEecCCeEEEEe-CC
Q psy12802 136 VALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV-QHPVPPYALSWPAG------YILAAGSDRIVTIYE-SD 207 (1637)
Q Consensus 136 ~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~-~~~~~v~~~~~~~~------~l~~~~~d~~i~iwd-~~ 207 (1637)
.+++|+|+++.|++|+.||+|++||++.. .++..+. .|..+|.++.|+|. .+++++.||.|++|| .+
T Consensus 218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 218 SSICIDEECCVLILGTTRGIIDIWDIRFN-----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCc-----cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 99999999999999999999999999873 6666665 78889999977652 788999999999999 78
Q ss_pred CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEE
Q psy12802 208 GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 287 (1637)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 287 (1637)
++.+..+.. +...+..+.|+|+++.+ +.+ ......|...|.+++|+ ++++|++|
T Consensus 293 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l-----~~~---------------~~~~~~~~~~v~~l~~~-~~~~l~s~ 346 (437)
T 3gre_A 293 GHCQYAFIN-----SDEQPSMEHFLPIEKGL-----EEL---------------NFCGIRSLNALSTISVS-NDKILLTD 346 (437)
T ss_dssp TEEEEEEES-----SSSCCCGGGGSCBCSSG-----GGC---------------CCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred CcEEEEEEc-----CCCCCccceeccccccc-----ccc---------------eecccccCCceEEEEEC-CceEEEec
Confidence 999888884 55577778888887544 000 01112356789999999 78899999
Q ss_pred ecCCcEEEEEccccc
Q psy12802 288 GLCGSVELFESVLKR 302 (1637)
Q Consensus 288 ~~dg~v~iwd~~~~~ 302 (1637)
+.||.|++||+.+++
T Consensus 347 ~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 347 EATSSIVMFSLNELS 361 (437)
T ss_dssp GGGTEEEEEETTCGG
T ss_pred CCCCeEEEEECCCcc
Confidence 999999999997654
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=289.65 Aligned_cols=274 Identities=15% Similarity=0.149 Sum_probs=234.7
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCC
Q psy12802 6 YTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDD 78 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~ 78 (1637)
....|...|++++| |++.+|++++.||.|++||+.++. |...|.+++|+|++++|++++.||.|++|++...
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 34678999999999 999999999999999999998765 7889999999999999999999999999999764
Q ss_pred CCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEec-CCCeEEEEeCCCc
Q psy12802 79 WGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNV-RGAGVLSGHADGS 155 (1637)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~ 155 (1637)
. ..+.+....+|...|.+++| ++. +++++.|+.|++|| .++. ..+..|...+.++.|+| +++.+++++.||.
T Consensus 92 ~-~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 92 S-GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp T-TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred C-CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence 2 22344455679999999999 566 99999999999999 4444 78889999999999999 9999999999999
Q ss_pred EEEEEecCCCCccccccccccc-CCCCcEEEEecC-CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEEC
Q psy12802 156 IVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS 232 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~~-~~~~v~~~~~~~-~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~s 232 (1637)
|++||.. .....+.. |...+.++.|+| +.+++++.||.|++|| .+++.+..+. .|...+++++|+
T Consensus 167 i~i~d~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~ 234 (313)
T 3odt_A 167 IKLWQND-------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYE-----GHESFVYCIKLL 234 (313)
T ss_dssp EEEEETT-------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEC
T ss_pred EEEEecC-------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhh-----cCCceEEEEEEe
Confidence 9999943 45566666 999999999988 4799999999999999 7889988887 466689999999
Q ss_pred CCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccccee
Q psy12802 233 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI 304 (1637)
Q Consensus 233 p~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~ 304 (1637)
|+| .+++++.|+ |++||+...... .....+...|.+++|+|+++ +++++.||.|++||+.+++..
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLK-----QVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEE-----EEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred cCC-CEEEEecCCEEEEEECCCCcee-----EEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 999 588899998 999998876543 22234566899999999998 667999999999999876654
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.8e-28 Score=300.74 Aligned_cols=311 Identities=12% Similarity=0.148 Sum_probs=254.9
Q ss_pred CCCCCc-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC
Q psy12802 8 DVSSNV-LQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW 79 (1637)
Q Consensus 8 ~~~~~~-i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~ 79 (1637)
..|... +++ ++++|+++++|+.||+|++||+.+++ |...|++++|+ ++.|++|+.||+|++||+.++
T Consensus 115 ~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~- 189 (445)
T 2ovr_B 115 KGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG- 189 (445)
T ss_dssp ECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-
T ss_pred cccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-
Confidence 345544 454 66679999999999999999998765 88999999998 569999999999999999874
Q ss_pred CCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEE
Q psy12802 80 GDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIV 157 (1637)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~ 157 (1637)
+.+....+|...|.++.|+ +. +++++.||+|++||+.+++. ..+.+|...|.+++| +|+.+++|+.||.|+
T Consensus 190 ---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 190 ---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp ---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred ---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 5566667899999999996 45 99999999999999999988 788899999999999 788999999999999
Q ss_pred EEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCC
Q psy12802 158 RYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ 236 (1637)
Q Consensus 158 iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 236 (1637)
+||+.+. .++..+.+|...|.++.|++..+++++.|+.|++|| .+++.+..+.. |...+.++.+ +++
T Consensus 263 iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~--~~~ 330 (445)
T 2ovr_B 263 VWDPETE-----TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-----HQSLTSGMEL--KDN 330 (445)
T ss_dssp EEEGGGT-----EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC-----CCSCEEEEEE--ETT
T ss_pred EEECCCC-----cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcC-----CcccEEEEEE--eCC
Confidence 9999873 677888899999999999888999999999999999 88998888873 5557777776 577
Q ss_pred EEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEec
Q psy12802 237 AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVS 315 (1637)
Q Consensus 237 ~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 315 (1637)
.+++++.|+ |++||+......... .....|...|.+++|+ +++|++|+.||.|++||+.+++.+....
T Consensus 331 ~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~------- 399 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTGQCLQTL--QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV------- 399 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE--CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEE--ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeee-------
Confidence 999999999 999999876543211 1112366789999995 6899999999999999997665432200
Q ss_pred CCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCc----EEEeeccc
Q psy12802 316 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDT----LLLGDLHR 370 (1637)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~----i~i~d~~~ 370 (1637)
.. .....+..|++++|+|++.++++ +.|++ +.+||+..
T Consensus 400 -------~~----------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 400 -------TL----------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -------EC----------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -------cc----------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00 00123448999999999988777 56666 99999754
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.1e-28 Score=302.68 Aligned_cols=282 Identities=12% Similarity=0.144 Sum_probs=233.3
Q ss_pred cccc-eEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCC
Q psy12802 45 KSYV-VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 45 h~~~-V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~ 123 (1637)
|... ++++.| ++++|++|+.||+|++||+.++ +.+....+|.+.|++++|+|++.+++|+.||+|++||++++
T Consensus 120 h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 120 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC
Confidence 5555 566555 5679999999999999999874 56666778999999999999888999999999999999999
Q ss_pred ce-eeecccCCcEEEEEEe--cCCCeEEEEeCCCcEEEEEecCCCCccc------------------ccccccccCCCCc
Q psy12802 124 KT-QTLYASNSFVVALCLN--VRGAGVLSGHADGSIVRYYVTEDASNFD------------------QQQGRVVQHPVPP 182 (1637)
Q Consensus 124 ~~-~~~~~~~~~v~~l~~s--~~g~~l~s~~~dg~i~iwd~~~~~~g~~------------------~~~~~~~~~~~~v 182 (1637)
+. ..+.+|...|.+++|+ ++++.+++|+.||+|++||+.+...... .....+.+|...+
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 88 7888999999999999 5788999999999999999986431000 0144567899999
Q ss_pred EEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCcccc
Q psy12802 183 YALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEE 260 (1637)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~ 260 (1637)
.++..+++.+++++.||.|++|| .+++++..+. .|...|.+++|+|+|+.+++|+.|+ |++||+.++...
T Consensus 274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~--- 345 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM--- 345 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE---
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE---
Confidence 99988888999999999999999 8888888887 4667899999999999999999999 999999876543
Q ss_pred CCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccC
Q psy12802 261 QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG 340 (1637)
Q Consensus 261 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 340 (1637)
.....|...|.++.|+ +++|++++.||.|++||+.++..... .+.+
T Consensus 346 --~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------~~~~ 391 (464)
T 3v7d_B 346 --YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS------------------------------YHHT 391 (464)
T ss_dssp --EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE------------------------------EECT
T ss_pred --EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee------------------------------ecCC
Confidence 2233577899999997 57999999999999999965432111 1123
Q ss_pred ceeeEEEEecCceEEEEeCCCcEEEeecccccee
Q psy12802 341 YEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 374 (1637)
Q Consensus 341 ~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~ 374 (1637)
..+..+.|+|++.++++++++.|++||+.++++.
T Consensus 392 ~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 425 (464)
T ss_dssp TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEE
T ss_pred CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEE
Confidence 3577889999999999988999999999876654
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=301.63 Aligned_cols=286 Identities=12% Similarity=0.110 Sum_probs=227.0
Q ss_pred cCCCCCceeEEEEcCCCCEEE-EEeC---CCeEEEEEcCCCC--------cccceEEEEECCC---CCeEEEEECCCeEE
Q psy12802 7 TDVSSNVLQDDVFNLDIVRLR-SEGN---VAGIWAWRGQNGR--------KSYVVKGLAFSPD---STKLAVAQSDNIIF 71 (1637)
Q Consensus 7 ~~~~~~~i~~~~~spdg~~la-~~~~---d~~i~vwd~~~~~--------h~~~V~~~~~spd---~~~la~~~~d~~i~ 71 (1637)
...|...|++++|+|++..++ +++. |+.|++||+.+++ |...|++++|+|+ +++|++++.||.|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 345889999999999996555 5554 8999999998765 6789999999999 69999999999999
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEE------cCCCC-EEEEeCCCcEEEEEcCCCc-e-eeecccCC----cEEEE
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVW------LADGP-IIYGQSDGKIKAAHVKANK-T-QTLYASNS----FVVAL 138 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~------s~~~~-l~~~~~d~~v~vwd~~~~~-~-~~~~~~~~----~v~~l 138 (1637)
+||+.++. ..+....+|...|.++.| +|+++ +++++.||.|++||+.++. . ..+..|.+ .+.++
T Consensus 94 iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 94 IWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 99998752 134445579999999954 67898 9999999999999999887 3 66655544 89999
Q ss_pred E----EecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC-----CeEEEEecCCeEEEEe-CCC
Q psy12802 139 C----LNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA-----GYILAAGSDRIVTIYE-SDG 208 (1637)
Q Consensus 139 ~----~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~d~~i~iwd-~~~ 208 (1637)
+ |+|+++.+++++.||.|++||+++. . ......|...|.++.|+| +.+++++.||.|++|| .++
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNM-----A-LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTT-----E-EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccC-----c-eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 8 7889999999999999999999873 2 344567899999999987 4899999999999999 555
Q ss_pred ceeEEeeccCCCCCCccEEEEEECCCCC-EEEEEecCc-EEEEEeCCCCCcccc--------------CCCcccCCCcce
Q psy12802 209 RVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPSKSVWEE--------------QPNKTIPNLYTI 272 (1637)
Q Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~-i~i~~~~~~~~~~~~--------------~~~~~~~~~~~i 272 (1637)
+....+.......|...|++++|+|+++ ++++++.|+ |++|++......... .......|...|
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 4444333110003677999999999999 899999999 999999865432100 011223467799
Q ss_pred eEEEEcCCCCEEE-EEecCCcEEEEEcccc
Q psy12802 273 SALSWKRDGSRIA-CGGLCGSVELFESVLK 301 (1637)
Q Consensus 273 ~~l~~spdg~~l~-~~~~dg~v~iwd~~~~ 301 (1637)
.+++|+|+|++|+ +++.||.|++||+.+.
T Consensus 325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred eEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999999999998 8999999999998643
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=6.1e-29 Score=303.43 Aligned_cols=289 Identities=10% Similarity=0.093 Sum_probs=235.9
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------------cccceEEEEECCC----C---CeEEEE
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------------KSYVVKGLAFSPD----S---TKLAVA 64 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------------h~~~V~~~~~spd----~---~~la~~ 64 (1637)
+....|...|++++|+| .+|++++.||.|++|++.++. |...|++++|+|+ + ++|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 44567999999999999 899999999999999998775 6889999999999 9 999999
Q ss_pred ECCCeEEEEEcCCCCCCce-eEeeccCC-----CCCEEEEEEc----CCCC--EEEEeCCCcEEEEEcCC------Cce-
Q psy12802 65 QSDNIIFIYKLGDDWGDKK-VICNKFIQ-----QCPVTTMVWL----ADGP--IIYGQSDGKIKAAHVKA------NKT- 125 (1637)
Q Consensus 65 ~~d~~i~iw~~~~~~~~~~-~~~~~~~~-----~~~v~~v~~s----~~~~--l~~~~~d~~v~vwd~~~------~~~- 125 (1637)
+.||.|++|++.++....+ .+.....| ...|.+++|+ |+++ +++++.||.|++||+.+ ++.
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999987532111 14444566 5999999999 9888 67889999999999998 554
Q ss_pred e-----ee-------cccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc---C---CCCcEEEEe
Q psy12802 126 Q-----TL-------YASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ---H---PVPPYALSW 187 (1637)
Q Consensus 126 ~-----~~-------~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~---~---~~~v~~~~~ 187 (1637)
. .+ ..|...|.+++|+|++ .+++++.||.|++||+++. ..+..+.. | ..+|.+++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-----RPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-----EEEEEEECCC---CCCCCEEEEEE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-----ceeEEEeccccccccCCccceEEE
Confidence 4 66 3488999999999999 9999999999999999873 66777777 8 999999999
Q ss_pred cCC--eEEEEecC---CeEEEEe-CCCceeEEeeccCCC--------CCCccEEEEEECCCCCEEEEEecCc-EEEEEeC
Q psy12802 188 PAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPH--------YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS 252 (1637)
Q Consensus 188 ~~~--~l~~~~~d---~~i~iwd-~~~~~~~~~~~~~~~--------~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~ 252 (1637)
+|+ .+++++.| +.|++|| .+++.+..+...... .|...|.+++|+|+|++|++++.|+ |++||+.
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 983 88999999 9999999 788888888741000 0667899999999999999999999 9999998
Q ss_pred CCCCccccCC-CcccCC---------------CcceeEEEEcCCC----------CEEEEEecCCcEEEEEcccc
Q psy12802 253 PSKSVWEEQP-NKTIPN---------------LYTISALSWKRDG----------SRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 253 ~~~~~~~~~~-~~~~~~---------------~~~i~~l~~spdg----------~~l~~~~~dg~v~iwd~~~~ 301 (1637)
.......... .....| ...|.+++|+|+| ++|++++.||.|++|++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 7654322110 001133 7899999999998 79999999999999999654
No 72
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.2e-29 Score=300.56 Aligned_cols=275 Identities=10% Similarity=0.050 Sum_probs=208.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCC-------eEEEEEcCCCC-----------------cccceEEEEECCCCCeEEEEE-
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVA-------GIWAWRGQNGR-----------------KSYVVKGLAFSPDSTKLAVAQ- 65 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~-------~i~vwd~~~~~-----------------h~~~V~~~~~spd~~~la~~~- 65 (1637)
+.+|.+++|+|||++|++|+.+. .|++|++..+. |...|.++++ +++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 46899999999999999997643 59999987543 3445666655 456666654
Q ss_pred ----------CCCeEEEEEcCCCCCCceeEeec-----cCCCCCEEEEEEcCCCC-EEE--EeCCCcEEEEEcCCCceee
Q psy12802 66 ----------SDNIIFIYKLGDDWGDKKVICNK-----FIQQCPVTTMVWLADGP-IIY--GQSDGKIKAAHVKANKTQT 127 (1637)
Q Consensus 66 ----------~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~-l~~--~~~d~~v~vwd~~~~~~~~ 127 (1637)
.|+.+++|++.......+..... ..+...+.+++|||||+ +++ ++.|++|++||+.+++...
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 46789999987653322222211 12345689999999999 665 4468999999999999855
Q ss_pred ecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCC----eE
Q psy12802 128 LYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDR----IV 201 (1637)
Q Consensus 128 ~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~----~i 201 (1637)
...|...|.+++|+|||+++++++.++ +++|+..+... ........|...|.+++|+|+ .+++++.|+ .+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC---IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcc---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 556888999999999999999998654 56666655321 223445678899999999984 788888877 68
Q ss_pred EEEe-CCCcee----EEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEE
Q psy12802 202 TIYE-SDGRVH----RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL 275 (1637)
Q Consensus 202 ~iwd-~~~~~~----~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l 275 (1637)
++|+ ..+... ..+. .|...|++++|||||++|++|+.|+ |+|||..+.+... .....|...|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~-----~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~----~~~~gH~~~V~~v 318 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVT-----NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK----IFKQAHSFAITEV 318 (365)
T ss_dssp EEEEEETTEEEEEEEEEEE-----SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE----EETTSSSSCEEEE
T ss_pred eecccccceecceeeeeec-----CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE----EecCcccCCEEEE
Confidence 8888 443321 2233 4677899999999999999999999 9999998765421 1124588899999
Q ss_pred EEcCCCCEEEEEecCCcEEEEEccc
Q psy12802 276 SWKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 276 ~~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
+|||||++|++||.|++|+||++..
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999853
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9.3e-29 Score=301.06 Aligned_cols=270 Identities=16% Similarity=0.237 Sum_probs=226.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR--------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~--------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
.++.+.|++ ..+++++.|+.|++||..++. |...|++++|+|++++|++|+.||.|++||+.++ +.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~ 168 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ----TK 168 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----eE
Confidence 345566665 457788889999999998776 6789999999999999999999999999999874 45
Q ss_pred EeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC-Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEe
Q psy12802 85 ICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA-NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161 (1637)
Q Consensus 85 ~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~-~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~ 161 (1637)
+....+|...|.+++| ++. +++++.||.|++||++. +.. ..+.+|...|.+++|+|+++.|++|+.||.|++||+
T Consensus 169 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 169 LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC
Confidence 5566689999999999 456 99999999999999984 443 788899999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCCCcEEEEecCC---eEEEEe--cCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCC
Q psy12802 162 TEDASNFDQQQGRVVQHPVPPYALSWPAG---YILAAG--SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG 235 (1637)
Q Consensus 162 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~--~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 235 (1637)
.+. .....+..|...|.+++|+|+ .+++++ .|+.|++|| .+++++..+. +...+.+++|+|+|
T Consensus 247 ~~~-----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~------~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 247 RSS-----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD------AGSQVTSLIWSPHS 315 (401)
T ss_dssp TCS-----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE------CSSCEEEEEECSSS
T ss_pred CCC-----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe------CCCcEEEEEECCCC
Confidence 873 667778899999999999982 555654 799999999 8888888886 34579999999999
Q ss_pred CEEEEEe--cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccccee
Q psy12802 236 QAVVVGS--YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI 304 (1637)
Q Consensus 236 ~~l~~~~--~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~ 304 (1637)
+.+++++ .++ |++|++....... ......|...|.+++|+|+|.+|++++.||.|++|++.+++.+
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~---~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTK---QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEE---EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred CeEEEEeecCCCcEEEEecCCcccee---EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 9999954 778 9999998744321 1123457789999999999999999999999999999766543
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.7e-28 Score=297.35 Aligned_cols=285 Identities=10% Similarity=0.123 Sum_probs=224.1
Q ss_pred CCcccceEEEEECCCC-CeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcC-CCC-EEEEeCCCcEEEEE
Q psy12802 43 GRKSYVVKGLAFSPDS-TKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA-DGP-IIYGQSDGKIKAAH 119 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~-l~~~~~d~~v~vwd 119 (1637)
..|...|++++|+|++ ++|++|+.||.|++||+.++ .........+|...|.+++|+| ++. +++++.|+.|++||
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 3478999999999999 99999999999999999874 2222333347999999999999 567 99999999999999
Q ss_pred cCCCceeeeccc---CCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC---eEE
Q psy12802 120 VKANKTQTLYAS---NSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG---YIL 193 (1637)
Q Consensus 120 ~~~~~~~~~~~~---~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~ 193 (1637)
+.+.....+..+ ...|.+++|+|+++.|++|+.||.|++||++. ..+..+..|...|.+++|+|+ .++
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------HEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------CEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------CEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 998666555544 48899999999999999999999999999953 677888899999999999984 789
Q ss_pred EEecCCeEEEEe-CC----CceeEEeeccCCCCCCccEEEEEECC-CCCEEEEEecCc-EEEEEeCCCCCccccC--CCc
Q psy12802 194 AAGSDRIVTIYE-SD----GRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSKSVWEEQ--PNK 264 (1637)
Q Consensus 194 ~~~~d~~i~iwd-~~----~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~-i~i~~~~~~~~~~~~~--~~~ 264 (1637)
+++.|+.|++|| .+ +.++..+. |...|.+++|+| +|+.|++++.|+ |++||+.......... ...
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEMP------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEEE------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEec------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 999999999999 44 55666553 566899999999 999999999999 9999998765431110 001
Q ss_pred ccCC----------CcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeE
Q psy12802 265 TIPN----------LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI 334 (1637)
Q Consensus 265 ~~~~----------~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 334 (1637)
...+ .+.+..++|+|||++ +|+.||.|++||+.+++.+.. +.+
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~------l~~------------------- 348 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ------LRD------------------- 348 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE------ECB-------------------
T ss_pred ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee------ecC-------------------
Confidence 1111 234555677777776 778999999999976653221 000
Q ss_pred EecccCceeeEEEEecCceEEEEeCCCcEEEeeccc
Q psy12802 335 LKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR 370 (1637)
Q Consensus 335 ~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~ 370 (1637)
......+..++|+|+++++++++|+.|++||+++
T Consensus 349 --~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 349 --PNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp --TTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred --CCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 1122357778999999999987899999999864
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=7.6e-28 Score=300.31 Aligned_cols=301 Identities=12% Similarity=0.108 Sum_probs=245.9
Q ss_pred CCC-CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 9 VSS-NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 9 ~~~-~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
.|. ..++++.| ++.++++|+.||+|++||+.+++ |...|++++|+|++ .|++|+.||+|++||+.++
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-- 193 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-- 193 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT--
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC--
Confidence 344 44565555 67899999999999999998765 89999999999998 9999999999999999874
Q ss_pred CceeEeeccCCCCCEEEEEEc--CCCC-EEEEeCCCcEEEEEcCCCce------------------------eeecccCC
Q psy12802 81 DKKVICNKFIQQCPVTTMVWL--ADGP-IIYGQSDGKIKAAHVKANKT------------------------QTLYASNS 133 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s--~~~~-l~~~~~d~~v~vwd~~~~~~------------------------~~~~~~~~ 133 (1637)
+.+....+|.+.|.+++|+ |++. +++++.|++|++||+.++.. ..+.+|..
T Consensus 194 --~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 194 --CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp --EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred --cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 5566667899999999999 4667 99999999999999988752 35667888
Q ss_pred cEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCce
Q psy12802 134 FVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRV 210 (1637)
Q Consensus 134 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~ 210 (1637)
.|.++ +++++.+++|+.||.|++||+.+. .++..+.+|...|.++.|+|+ .+++|+.||.|++|| .++++
T Consensus 272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-----KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred eEEEE--cCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 88877 688999999999999999999873 677888899999999999984 899999999999999 78999
Q ss_pred eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEec
Q psy12802 211 HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL 289 (1637)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 289 (1637)
+..+. .|...|.+++|+ ++.+++++.|+ |++||+...... ....+...+..++|+|+++++++|+
T Consensus 345 ~~~~~-----~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~- 410 (464)
T 3v7d_B 345 MYTLQ-----GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK------FSYHHTNLSAITTFYVSDNILVSGS- 410 (464)
T ss_dssp EEEEC-----CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE------EEEECTTCCCEEEEEECSSEEEEEE-
T ss_pred EEEEe-----CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee------eeecCCCCccEEEEEeCCCEEEEec-
Confidence 98887 466689999997 58999999999 999999875542 2233555788899999999999988
Q ss_pred CCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEe
Q psy12802 290 CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLG 366 (1637)
Q Consensus 290 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~ 366 (1637)
||.|++||+.+++.+... .......|.+++|++ +.++++ ..++.+.+|
T Consensus 411 dg~i~iwd~~~g~~~~~~----------------------------~~~~~~~v~~v~~~~-~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHAN----------------------------ILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTEEEEEETTTCCEEESC----------------------------TTTTCSEEEEEEEET-TEEEEEEEETTEEEEE
T ss_pred CCeEEEEECCCCcEEehh----------------------------hccCCCcEEEEEecC-CEEEEEEEeCCeEEEE
Confidence 999999999776544221 011234799999984 555555 455555443
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.1e-28 Score=296.43 Aligned_cols=269 Identities=17% Similarity=0.237 Sum_probs=227.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCce
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR---------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~---------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~ 83 (1637)
.++.+.||+++ .|++|. |++|+|||..+++ |...|++++|+|||++|++|+.||+|+|||+.++ +
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~ 180 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K 180 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----E
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----c
Confidence 45779999864 777766 8999999999875 5678999999999999999999999999999884 6
Q ss_pred eEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEE
Q psy12802 84 VICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYY 160 (1637)
Q Consensus 84 ~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd 160 (1637)
.+....+|...|.+++|+ +. +++|+.|+.+++||...... ..+.+|...+..+.|+|+|+.+++++.|+.|++|+
T Consensus 181 ~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 667777899999998875 56 99999999999999987654 77889999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccCCCCcEEEEecCC---eEEE--EecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 161 VTEDASNFDQQQGRVVQHPVPPYALSWPAG---YILA--AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 161 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~--~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
........ ..+.....|...|.+++|+|. .+++ |+.|++|++|| .+++++..+.. ...+.++.|+|+
T Consensus 259 ~~~~~~~~-~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~------~~~v~~~~~~~~ 331 (420)
T 4gga_A 259 SAPGEGGW-VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------HSQVCSILWSPH 331 (420)
T ss_dssp SSCCSSCS-CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC------SSCEEEEEEETT
T ss_pred eccccccc-eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc------ccceeeeeecCC
Confidence 98643210 234566789999999999882 4554 45799999999 88888888773 346999999999
Q ss_pred CCEEEEEe--cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccc
Q psy12802 235 GQAVVVGS--YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 235 g~~l~~~~--~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
++.+++++ .|+ |++||+.+.... .....|...|++++|+|||++|++|+.||+|++||+...
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v-----~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKV-----AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEE-----EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99998876 566 999999876653 233468889999999999999999999999999998543
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=3.5e-28 Score=281.82 Aligned_cols=242 Identities=17% Similarity=0.233 Sum_probs=200.8
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------CcccceEEEEECCC--CCeEEEEECCCeEEEEE
Q psy12802 6 YTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG---------RKSYVVKGLAFSPD--STKLAVAQSDNIIFIYK 74 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~---------~h~~~V~~~~~spd--~~~la~~~~d~~i~iw~ 74 (1637)
....|...|++++|||||++|++++.|++|++||+.++ .|...|++++|+|+ +++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 45678999999999999999999999999999998642 38899999999874 89999999999999999
Q ss_pred cCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEEcCCCc---eeeecccCCcEEEEEEecC-----
Q psy12802 75 LGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAHVKANK---TQTLYASNSFVVALCLNVR----- 143 (1637)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~v~~l~~s~~----- 143 (1637)
+.++. ...+.....|...|.+++|+|+ +. +++++.|++|++||++++. ...+.+|...|.+++|+|+
T Consensus 84 ~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 84 EENGR--WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp BSSSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred cCCCc--eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 98641 1233344579999999999998 77 9999999999999998764 2567899999999999997
Q ss_pred --------CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-----eEEEEecCCeEEEEe-CCCc
Q psy12802 144 --------GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-----YILAAGSDRIVTIYE-SDGR 209 (1637)
Q Consensus 144 --------g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~d~~i~iwd-~~~~ 209 (1637)
++.|++|+.|++|++||++.....+ .....+.+|...|.+++|+|+ .+++++.|++|++|| ..+.
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEE-EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5789999999999999998642100 145678899999999999984 688999999999999 4332
Q ss_pred --e-eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCC
Q psy12802 210 --V-HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 210 --~-~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~ 253 (1637)
. ...+... .+...+.+++|+|+|+.|++++.|+ |++|+...
T Consensus 241 ~~~~~~~~~~~---~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 241 GPWKKTLLKEE---KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCCEEEESSSS---CCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred Cccceeeeecc---cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 1 1222111 4667899999999999999999999 99999864
No 78
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=4e-27 Score=322.69 Aligned_cols=535 Identities=12% Similarity=0.053 Sum_probs=348.0
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECC------CeEEEEEcC
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSD------NIIFIYKLG 76 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d------~~i~iw~~~ 76 (1637)
++...+..++||| +.|++.+. +.|++|++.++. |...|.+++|||||++||+++.+ ..|++|++.
T Consensus 12 ~~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~ 88 (1045)
T 1k32_A 12 CMPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 88 (1045)
T ss_dssp -CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred cccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence 3556789999996 47888775 689999998775 77889999999999999987643 378999987
Q ss_pred CCCCCceeEeeccCCCCCE-------EEEEEcCCCC-EEEEeCC------CcEEEEEcCCCceeeecccCCcEEEEEEec
Q psy12802 77 DDWGDKKVICNKFIQQCPV-------TTMVWLADGP-IIYGQSD------GKIKAAHVKANKTQTLYASNSFVVALCLNV 142 (1637)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v-------~~v~~s~~~~-l~~~~~d------~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~ 142 (1637)
++ . ......|...+ .+++|||||+ +++++.+ ..|++|++.+++...+..+.. ..++|||
T Consensus 89 ~g----~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~sp 161 (1045)
T 1k32_A 89 NG----E-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA--THILFAD 161 (1045)
T ss_dssp TT----E-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC--SEEEEET
T ss_pred CC----C-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCc--ceeeeCC
Confidence 74 2 33455677777 9999999999 6666644 468889998888766555433 4577999
Q ss_pred CCCeEEEEeC------------CCcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeE-EEEecCCeEEEEe--CC
Q psy12802 143 RGAGVLSGHA------------DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYI-LAAGSDRIVTIYE--SD 207 (1637)
Q Consensus 143 ~g~~l~s~~~------------dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~d~~i~iwd--~~ 207 (1637)
| .+++++. +....+|..... .....+.+|...+.++.|+++.+ ++++.++.+.+|. ..
T Consensus 162 -G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-----~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 162 -G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-----GAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp -T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-----TEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETT
T ss_pred -C-EEEEeccCCCccccccccCCCcCCEEEECCC-----CCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCC
Confidence 8 8888753 345677765442 22344588999999999999854 4566788889997 55
Q ss_pred CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCC------CcccCCCcceeEEEEc-CC
Q psy12802 208 GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQP------NKTIPNLYTISALSWK-RD 280 (1637)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~------~~~~~~~~~i~~l~~s-pd 280 (1637)
+.....+..+ . .+...+|||||+.+++++...|.+|+....... .... .....+...+.+++|| ||
T Consensus 235 g~~~~~l~~~-----~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 235 GKDLRKHTSF-----T-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLD 307 (1045)
T ss_dssp SCSCEECCCC-----C-SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECG
T ss_pred CCcceEecCC-----C-CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCC
Confidence 6555566532 2 356679999999999986444989887332211 0000 0001123468999999 99
Q ss_pred CCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eC
Q psy12802 281 GSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RT 359 (1637)
Q Consensus 281 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~ 359 (1637)
|+.|++++ ++.|.+|+...+... .+..+.+..+..+.|+ +|+.++. +.
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVL-----------------------------KVPEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEE-----------------------------ECSCCSCEEEEEECSS-SEEEEEEEET
T ss_pred CCEEEEEE-cCEEEEEcCCCCceE-----------------------------EccCCCcceEEeeeEc-CCCeEEEEEC
Confidence 99999887 889999998644311 1111222367889999 8876666 55
Q ss_pred CCcEE-EeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCcc
Q psy12802 360 PDTLL-LGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKT 438 (1637)
Q Consensus 360 ~~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~ 438 (1637)
++.+. +||+.++....+. . . ......+.|+|++..++..+.+.. +++|+...... ....
T Consensus 357 ~~~l~~~~d~~~~~~~~l~-~-~--------~~~~~~~~~SpDG~~la~~~~~~~-----v~~~d~~tg~~-----~~~~ 416 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFE-E-N--------LGNVFAMGVDRNGKFAVVANDRFE-----IMTVDLETGKP-----TVIE 416 (1045)
T ss_dssp TEEEEEEEETTTCCEEECC-C-C--------CCSEEEEEECTTSSEEEEEETTSE-----EEEEETTTCCE-----EEEE
T ss_pred CCceEEEEECCCCCceEec-C-C--------ccceeeeEECCCCCEEEEECCCCe-----EEEEECCCCce-----EEec
Confidence 66777 8898877665443 1 1 134567899998877776655542 34554433210 0011
Q ss_pred CCCcceeeeeeeccCCCeEEeeccCC----------cEEEehhhhhhhhhcCceeEEEecCCceEEeeccCCCCCceeEE
Q psy12802 439 IPNLYTISALSWKRDGSRIACGGLCG----------SVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL 508 (1637)
Q Consensus 439 ~~~~~~I~~l~~s~dg~~la~g~~dg----------~v~lw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 508 (1637)
..|.+.+.+++|||||++|++++.++ .|++||....+ +..+.
T Consensus 417 ~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------------------~~~l~---------- 468 (1045)
T 1k32_A 417 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------------------IFAAT---------- 468 (1045)
T ss_dssp ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE------------------EEECS----------
T ss_pred cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc------------------EEEee----------
Confidence 15677889999999999999887654 88888864321 11111
Q ss_pred eeccceeeeeEEEecCcceEeeccccccccCcccccccccccccccccCCCceEEEeec--------------cceEEEE
Q psy12802 509 KSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLLD--------------LHTICVI 574 (1637)
Q Consensus 509 ~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~la~~~~--------------~~~i~v~ 574 (1637)
.+...+..+.|+++++.+++...+............ .. +.++.+....... +.....|
T Consensus 469 --~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1045)
T 1k32_A 469 --TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN-----FS-FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540 (1045)
T ss_dssp --CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC-----EE-CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred --CCCcccCCceEcCCCCEEEEEecccCCcCcchhccc-----cc-cccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence 122344557788888887765432211100000000 00 1111111111111 0001124
Q ss_pred EccCC-cceEEe-cccCCccEEEeCcCcceeEe-------------ecccceEEEEeccccceeeecccceEEEEecCCc
Q psy12802 575 DLITN-LPTLHI-NHDSKIDWLELNETAHKLLY-------------RDKKMRLTLLDIRTSEKHNILNYCTFVQWLPGSD 639 (1637)
Q Consensus 575 dl~~~-~~~~~~-~~~~~i~~l~~s~~g~~L~~-------------~~~~~~~~l~d~~t~~~~~l~~~~~~v~w~~~~~ 639 (1637)
++.+. ..+..+ .|...+..+.++|||..+++ .+....+++||+.+++...+...+..+.|+||++
T Consensus 541 d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~ 620 (1045)
T 1k32_A 541 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRK 620 (1045)
T ss_dssp CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSC
T ss_pred cccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCC
Confidence 44321 122333 46677889999999987774 2235689999999998877777788899999999
Q ss_pred eeEeccccceeEEEe
Q psy12802 640 VVVAQSRHNACVWYN 654 (1637)
Q Consensus 640 ~l~~~~~~~l~v~~~ 654 (1637)
.|+..+.+.+.+|.-
T Consensus 621 ~l~~~~~~~i~~~d~ 635 (1045)
T 1k32_A 621 TVMVRKDDGKIYTFP 635 (1045)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEcCCcEEEEeC
Confidence 888877778887543
No 79
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-27 Score=288.98 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=234.5
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
.|...|++++|+|++++|++++.||.|++||+.++ +.+....+|...|.+++|+|+++ +++++.||.|++||+.+
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 48899999999999999999999999999999874 45556678999999999999999 99999999999999999
Q ss_pred CceeeecccCCcEEEEEEecCCCeEEEEeCC-----CcEEEEEecCCCCcc------cccccccccCCC--CcEEEEecC
Q psy12802 123 NKTQTLYASNSFVVALCLNVRGAGVLSGHAD-----GSIVRYYVTEDASNF------DQQQGRVVQHPV--PPYALSWPA 189 (1637)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~g~------~~~~~~~~~~~~--~v~~~~~~~ 189 (1637)
++......+...|.+++|+|+++.+++++.+ |.|.+||+....... ......+..|.. .+.+++|+|
T Consensus 106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 106 GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 9984444489999999999999999999999 999999998743100 012334445665 999999998
Q ss_pred C--eEEEEecCCeEEEEe-CC-CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCc
Q psy12802 190 G--YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNK 264 (1637)
Q Consensus 190 ~--~l~~~~~d~~i~iwd-~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~ 264 (1637)
+ .+++++.||.|++|| .+ ++.+..+. .|...|.+++|+|+++.|++++.|+ |++||+...... .
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------~ 254 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSID-----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL------K 254 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------E
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEEe-----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee------e
Confidence 4 899999999999999 55 67777777 4566899999999999999999999 999999876543 3
Q ss_pred ccCCCcceeEEEEcCCCCEEEEEecCC--------------cEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCC
Q psy12802 265 TIPNLYTISALSWKRDGSRIACGGLCG--------------SVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG 330 (1637)
Q Consensus 265 ~~~~~~~i~~l~~spdg~~l~~~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (1637)
...+...+.++.|+|+++++++++.++ .+++||..+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------------------- 307 (369)
T 3zwl_B 255 KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--------------------------- 307 (369)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE---------------------------
T ss_pred eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc---------------------------
Confidence 334667899999999999999999998 566666643322
Q ss_pred ceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccce
Q psy12802 331 RGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 331 ~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~ 373 (1637)
+.....+...|+++.|+|+++++++ +.|+.|++|++.++..
T Consensus 308 --~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 308 --IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp --EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred --hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 2222223347999999999887777 7799999999976543
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.7e-27 Score=294.84 Aligned_cols=316 Identities=14% Similarity=0.142 Sum_probs=253.8
Q ss_pred cccce-EEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 45 KSYVV-KGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 45 h~~~V-~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
|...| ++ ++++|++|++|+.||+|++||+.++ +.+....+|...|.++.|+ +. +++|+.||+|++||+.+
T Consensus 117 h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 117 HDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp STTSCEEE--EEEETTEEEEEETTSCEEEEETTTC----CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred cCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCC----cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 55554 54 5667899999999999999999874 5566677899999999998 55 99999999999999999
Q ss_pred Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeE
Q psy12802 123 NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIV 201 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 201 (1637)
++. ..+.+|...|.++.|+ ++.+++|+.||+|++||+.+. +.+..+.+|..+|.++.|+++.+++++.||.|
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 261 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-----CEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-----cEEEEEcCCcccEEEEEECCCEEEEEcCCCEE
Confidence 988 8889999999999996 567999999999999999873 67788889999999999988899999999999
Q ss_pred EEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC
Q psy12802 202 TIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR 279 (1637)
Q Consensus 202 ~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 279 (1637)
++|| .+++++..+. .|...+.+++| ++..+++++.|+ |++||+....... ....|...+.++.+
T Consensus 262 ~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~~v~~~~~-- 327 (445)
T 2ovr_B 262 KVWDPETETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH-----TLTGHQSLTSGMEL-- 327 (445)
T ss_dssp EEEEGGGTEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE-----EECCCCSCEEEEEE--
T ss_pred EEEECCCCcEeEEec-----CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE-----EEcCCcccEEEEEE--
Confidence 9999 7888888887 46668999999 889999999999 9999998766432 22345567777776
Q ss_pred CCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeC
Q psy12802 280 DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART 359 (1637)
Q Consensus 280 dg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~ 359 (1637)
+++.+++|+.||.|++||+.+++.... +.. .......|+++.|++ +.+++++.
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~--------------------~~~~~~~v~~~~~~~-~~l~s~~~ 380 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQT------LQG--------------------PNKHQSAVTCLQFNK-NFVITSSD 380 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEE------ECS--------------------TTSCSSCEEEEEECS-SEEEEEET
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEE------Ecc--------------------CCCCCCCEEEEEECC-CEEEEEeC
Confidence 577999999999999999975543211 100 011234788999974 45555588
Q ss_pred CCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccC
Q psy12802 360 PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTI 439 (1637)
Q Consensus 360 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~ 439 (1637)
++.|++||+.+++....... . ...
T Consensus 381 dg~v~iwd~~~~~~~~~~~~-------------------~-------------------------------------~~~ 404 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVT-------------------L-------------------------------------ESG 404 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEE-------------------C-------------------------------------TTG
T ss_pred CCeEEEEECCCCceeeeeec-------------------c-------------------------------------ccC
Confidence 99999999877654321100 0 111
Q ss_pred CCcceeeeeeeccCCCeEEeeccCCc----EEEehhh
Q psy12802 440 PNLYTISALSWKRDGSRIACGGLCGS----VELFESV 472 (1637)
Q Consensus 440 ~~~~~I~~l~~s~dg~~la~g~~dg~----v~lw~~~ 472 (1637)
++.+.|++++|+|+|..+++|+.||+ +.|||..
T Consensus 405 ~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 405 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 45678999999999999999999998 8888863
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=7e-28 Score=294.05 Aligned_cols=309 Identities=10% Similarity=0.033 Sum_probs=233.6
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC--CceeEeeccCCCCCEEEEEEcCC----C---C-EEEEeCC
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG--DKKVICNKFIQQCPVTTMVWLAD----G---P-IIYGQSD 112 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~v~~s~~----~---~-l~~~~~d 112 (1637)
..|...|++++|+| ++|++|+.||.|++|++.++.. ....+....+|..+|++++|+|+ + + +++++.|
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 45899999999999 7999999999999999987520 01234455589999999999999 9 8 9999999
Q ss_pred CcEEEEEcCCCc------eeeeccc-----CCcEEEEEEe----cCCCe-EEEEeCCCcEEEEEecC------CCCcccc
Q psy12802 113 GKIKAAHVKANK------TQTLYAS-----NSFVVALCLN----VRGAG-VLSGHADGSIVRYYVTE------DASNFDQ 170 (1637)
Q Consensus 113 ~~v~vwd~~~~~------~~~~~~~-----~~~v~~l~~s----~~g~~-l~s~~~dg~i~iwd~~~------~~~g~~~ 170 (1637)
|.|++||+.+++ ...+..| ...|.+++|+ |+++. |++++.||.|++||+.. . .
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~ 165 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS-----L 165 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH-----T
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc-----c
Confidence 999999999887 5677788 5899999999 99999 99999999999999987 3 3
Q ss_pred ccc-----cc-------ccCCCCcEEEEecCC-eEEEEecCCeEEEEe-CCCceeEEeeccCCCCC---CccEEEEEECC
Q psy12802 171 QQG-----RV-------VQHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK---EREFTVACSSP 233 (1637)
Q Consensus 171 ~~~-----~~-------~~~~~~v~~~~~~~~-~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~---~~~i~~~~~sp 233 (1637)
.+. .+ ..|...|.+++|+|+ .+++++.|+.|++|| .+++.+..+.... .| ...+.+++|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH--SMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC-----CCCCCEEEEEECS
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccc--cccccCCccceEEECC
Confidence 333 55 448999999999985 888899999999999 7788888887410 14 66899999999
Q ss_pred CCCEEEEEecC---c-EEEEEeCCCCCccccCCC--------cccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccc
Q psy12802 234 SGQAVVVGSYD---N-IKLFAWSPSKSVWEEQPN--------KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 234 ~g~~l~~~~~d---~-i~i~~~~~~~~~~~~~~~--------~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
++++|++++.+ + |++||+............ ....|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999 8 999999876543211110 00116789999999999999999999999999999766
Q ss_pred ceeeeCcEEEEEecCCeEEEecCCC---CCCCceeEEecccCceeeEEEEecCc----------eEEEE-eCCCcEEEee
Q psy12802 302 RTIWKGKFEMIYVSPSQVLVKPLSG---ESKGRGVILKSQYGYEITDVAIMGND----------RYLVA-RTPDTLLLGD 367 (1637)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~i~~v~~s~~~----------~~lv~-~~~~~i~i~d 367 (1637)
+.+.. +..+.. .... ...+.. .....+...|++++|+|++ .++++ +.|+.|++||
T Consensus 324 ~~~~~------~~~~~~----~~~~~~~~~~g~~-~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 324 ERITT------LNMHCD----DIEIEEDILAVDE-HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEEE------EECCGG----GCSSGGGCCCBCT-TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ceeEE------EecccC----cccchhhhhcccc-ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 44322 110000 0000 000000 0001114589999999997 45555 8899999999
Q ss_pred cccc
Q psy12802 368 LHRN 371 (1637)
Q Consensus 368 ~~~~ 371 (1637)
+.++
T Consensus 393 ~~~g 396 (397)
T 1sq9_A 393 EAGG 396 (397)
T ss_dssp EEC-
T ss_pred cCCC
Confidence 8765
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=9.8e-28 Score=294.13 Aligned_cols=288 Identities=12% Similarity=0.134 Sum_probs=224.8
Q ss_pred ecCCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC--------------------CcccceEEEEECC-CCCeEEE
Q psy12802 6 YTDVSSNVLQDDVFNL-DIVRLRSEGNVAGIWAWRGQNG--------------------RKSYVVKGLAFSP-DSTKLAV 63 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~sp-dg~~la~~~~d~~i~vwd~~~~--------------------~h~~~V~~~~~sp-d~~~la~ 63 (1637)
....|...|++++|+| +|++|++++.||.|++||+.++ .|...|++++|+| ++.+|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 4556899999999999 9999999999999999999864 3788999999999 7889999
Q ss_pred EECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCC---CC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEE
Q psy12802 64 AQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLAD---GP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVAL 138 (1637)
Q Consensus 64 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l 138 (1637)
++.||.|++||+.++ .... ...+...+.++.|+|. +. +++++.++.|++||+.+++. ..+.+|...|.++
T Consensus 118 ~~~d~~i~iwd~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL----QTAD-VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EETTSEEEEEETTTT----EEEE-EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EeCCCeEEEeeCCCC----ccce-eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 999999999999874 2222 2347788999999984 44 88899999999999999887 8888999999999
Q ss_pred EEecCCCe-EEEEeCCCcEEEEEecCCCCcc-----------cccccccccCCCCcEEEEecCC--eEEEEecCCeEEEE
Q psy12802 139 CLNVRGAG-VLSGHADGSIVRYYVTEDASNF-----------DQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIY 204 (1637)
Q Consensus 139 ~~s~~g~~-l~s~~~dg~i~iwd~~~~~~g~-----------~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iw 204 (1637)
+|+|+++. +++|+.||.|++||++...... .........|...|.+++|+|+ .+++++.||.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999995 8999999999999997643100 0111223578999999999984 89999999999999
Q ss_pred e-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCC
Q psy12802 205 E-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS 282 (1637)
Q Consensus 205 d-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 282 (1637)
| .+++....+...........+........+..+++++.++ |++||+...... .....|...|.+++|+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-----TMLKGHYKTVDCCVFQSNFQ 347 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE-----EEECCCSSCEEEEEEETTTT
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce-----eeeccCCCeEEEEEEcCCCC
Confidence 9 6666554443221101112222233333445555566666 999999876653 23345778999999999999
Q ss_pred EEEEEecCCcEEEEEccccce
Q psy12802 283 RIACGGLCGSVELFESVLKRT 303 (1637)
Q Consensus 283 ~l~~~~~dg~v~iwd~~~~~~ 303 (1637)
+|++++.||.|++||+.+++.
T Consensus 348 ~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEETTSCEEEEEECC---
T ss_pred EEEEECCCCeEEEEeCCCCCc
Confidence 999999999999999976654
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.1e-28 Score=288.64 Aligned_cols=251 Identities=16% Similarity=0.232 Sum_probs=200.2
Q ss_pred EEcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcC--CCC-EEEEeCCCc
Q psy12802 38 WRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA--DGP-IIYGQSDGK 114 (1637)
Q Consensus 38 wd~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~-l~~~~~d~~ 114 (1637)
.......|...|++++|+|+|++|++|+.|++|+|||+.++ ....+....+|..+|.+++|+| +++ +++++.|++
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~--~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG--GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT--EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred eeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC--CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 33344569999999999999999999999999999999764 1223455668999999999986 377 999999999
Q ss_pred EEEEEcCCCc--e-eeecccCCcEEEEEEecC--CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC
Q psy12802 115 IKAAHVKANK--T-QTLYASNSFVVALCLNVR--GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA 189 (1637)
Q Consensus 115 v~vwd~~~~~--~-~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 189 (1637)
|++||++++. . ..+.+|...|.+++|+|+ |..|++|+.||+|++||+.....- .....+.+|...+.++.|+|
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSSSCBCCCEECC
T ss_pred EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeeccccCCcceEEEcc
Confidence 9999999874 3 567889999999999998 889999999999999999864210 23456678999999999987
Q ss_pred C-------------------eEEEEecCCeEEEEe-CCC---ceeEEeeccCCCCCCccEEEEEECCCC----CEEEEEe
Q psy12802 190 G-------------------YILAAGSDRIVTIYE-SDG---RVHRIFDYTAPHYKEREFTVACSSPSG----QAVVVGS 242 (1637)
Q Consensus 190 ~-------------------~l~~~~~d~~i~iwd-~~~---~~~~~~~~~~~~~~~~~i~~~~~sp~g----~~l~~~~ 242 (1637)
+ .+++|+.|++|++|| ..+ +++..+. .|...|.+++|+|++ ..|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-----~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-----AHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-----CCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-----cCCCceEEEEecCCCCCCCceEEEEc
Confidence 4 689999999999999 433 3445555 477799999999997 8999999
Q ss_pred cCc-EEEEEeCCCC-CccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 243 YDN-IKLFAWSPSK-SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 243 ~d~-i~i~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.|+ |++|+..... ..+.. .....+...|.+++|+|+|++|++++.||+|++|+..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSP--KLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBC--CEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhh--hhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999 9999987632 11111 1123456789999999999999999999999999974
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=279.21 Aligned_cols=287 Identities=14% Similarity=0.146 Sum_probs=236.0
Q ss_pred ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEE
Q psy12802 82 KKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRY 159 (1637)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iw 159 (1637)
.+......+|.+.|++++| |+++ +++++.||.|++||+.+++. ..+..|...|.+++|+|+++.+++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3555667789999999999 8888 99999999999999999887 7888999999999999999999999999999999
Q ss_pred EecCCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECC-CCCEE
Q psy12802 160 YVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAV 238 (1637)
Q Consensus 160 d~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l 238 (1637)
++.....+ .....+.+|...|.++.|+++.+++++.|+.|++|| .++....+. .|...+.+++|+| +++.+
T Consensus 87 ~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 87 PLFATSGE--DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQ-----AHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp ETTCCTTS--CC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEE-----CCSSCEEEEEEEETTTTEE
T ss_pred EeeecCCC--CcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecc-----cCCCceeEEEEccCCCCEE
Confidence 99876544 667788899999999999889999999999999999 677777777 4666899999988 99999
Q ss_pred EEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCC
Q psy12802 239 VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPS 317 (1637)
Q Consensus 239 ~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 317 (1637)
++++.++ |++||...... .....+...+.+++|+|++. +++++.||.|++||+.+++.+..
T Consensus 159 ~~~~~d~~i~i~d~~~~~~------~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~----------- 220 (313)
T 3odt_A 159 LTASADKTIKLWQNDKVIK------TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT----------- 220 (313)
T ss_dssp EEEETTSCEEEEETTEEEE------EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-----------
T ss_pred EEEECCCCEEEEecCceEE------EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-----------
Confidence 9999999 99999322111 12223667899999999998 99999999999999975543211
Q ss_pred eEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEE
Q psy12802 318 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLV 397 (1637)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1637)
...+...|+++.|+|++++++++.++.|++||+.+++.....
T Consensus 221 ------------------~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------------- 262 (313)
T 3odt_A 221 ------------------YEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI-------------------- 262 (313)
T ss_dssp ------------------EECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEE--------------------
T ss_pred ------------------hhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEE--------------------
Confidence 111233799999999998888899999999998765432110
Q ss_pred EeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEEEehhhhhh
Q psy12802 398 FNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 475 (1637)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~~~~~~ 475 (1637)
..|...|++++|+|||+ +++++.||.|++|+....+
T Consensus 263 -----------------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 263 -----------------------------------------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp -----------------------------------------ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred -----------------------------------------eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 03445789999999998 6679999999999976544
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=8.2e-28 Score=290.55 Aligned_cols=311 Identities=14% Similarity=0.121 Sum_probs=234.2
Q ss_pred cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
|..+|++++|+|++++|++++.|+.|++||+.++ ..+.+....+|...|++++|+|+++ +++++.||.|++||+.++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC--cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 7789999999999999999999999999999874 1125555668999999999999999 999999999999999998
Q ss_pred ce---eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccc-cccccCCCCcEEEEecCC--eEEEEec
Q psy12802 124 KT---QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ-GRVVQHPVPPYALSWPAG--YILAAGS 197 (1637)
Q Consensus 124 ~~---~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~-~~~~~~~~~v~~~~~~~~--~l~~~~~ 197 (1637)
+. ..+..|...|.+++|+|+++.|++++.||.|++||+...... ... ....+|...|.+++|+|+ .+++++.
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW--WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE--EEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc--eeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 74 445789999999999999999999999999999999875310 112 233578999999999984 8999999
Q ss_pred CCeEEEEeC-------------------CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCc
Q psy12802 198 DRIVTIYES-------------------DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSV 257 (1637)
Q Consensus 198 d~~i~iwd~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~ 257 (1637)
||.|++||. .++.+..+. .|...+.+++|+|+|+.|++++.|+ |++||+......
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 999999993 466777776 4666899999999999999999999 999999876543
Q ss_pred cccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc--cceeeeCcEEEEEecCC--eEEEecC---CCCCCC
Q psy12802 258 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL--KRTIWKGKFEMIYVSPS--QVLVKPL---SGESKG 330 (1637)
Q Consensus 258 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~--~~~v~~~---~~~~~~ 330 (1637)
.....+...|.+++|+|++.++++| .||.|++|++.. +...........-.... ...+..+ ... +
T Consensus 238 -----~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 309 (372)
T 1k8k_C 238 -----ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK--A 309 (372)
T ss_dssp -----EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC--C
T ss_pred -----EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc--c
Confidence 2223456789999999999988877 899999999976 43221111100000000 0000000 000 0
Q ss_pred ce-------eEEecccCceeeEEEEe-cCc---eEEEE-eCCCcEEEeeccccc
Q psy12802 331 RG-------VILKSQYGYEITDVAIM-GND---RYLVA-RTPDTLLLGDLHRNL 372 (1637)
Q Consensus 331 ~~-------~~~~~~~~~~i~~v~~s-~~~---~~lv~-~~~~~i~i~d~~~~~ 372 (1637)
.. ..+...+...|++++|+ +++ .++++ +.|+.|++||+.+.+
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 00 12222344589999977 554 66665 889999999986643
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=287.20 Aligned_cols=305 Identities=10% Similarity=0.094 Sum_probs=225.7
Q ss_pred CcccceEEEEECCCCCeEE-EEEC---CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCC---CC-EEEEeCCCcE
Q psy12802 44 RKSYVVKGLAFSPDSTKLA-VAQS---DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLAD---GP-IIYGQSDGKI 115 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la-~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~-l~~~~~d~~v 115 (1637)
.|...|++++|+|++..++ +++. ||.|++||+.++ ........+|..+|++++|+|+ +. +++++.||.|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3889999999999997665 5554 899999999875 2222333478999999999999 57 9999999999
Q ss_pred EEEEcCCCc-e-eeecccCCcEEEEEE------ecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCC----CcE
Q psy12802 116 KAAHVKANK-T-QTLYASNSFVVALCL------NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPV----PPY 183 (1637)
Q Consensus 116 ~vwd~~~~~-~-~~~~~~~~~v~~l~~------s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~----~v~ 183 (1637)
++||+.+++ . ..+.+|...|.++.| +|+++.|++++.||.|++||+.... .....+..|.+ .+.
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD----DPVANMEPVQGENKRDCW 168 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS----SCSEEECCCTTSCCCCEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC----CcceeccccCCCCCCceE
Confidence 999999987 5 888899999999954 6899999999999999999998753 24555554444 889
Q ss_pred EEE----ecC--CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC---CCCEEEEEecCc-EEEEEeC
Q psy12802 184 ALS----WPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP---SGQAVVVGSYDN-IKLFAWS 252 (1637)
Q Consensus 184 ~~~----~~~--~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~d~-i~i~~~~ 252 (1637)
++. |+| ..+++++.||.|++|| .+++.... . .+...+.+++|+| ++..+++++.++ |++||+.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-T-----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-E-----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-c-----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 998 555 4889999999999999 66665443 3 3566899999999 999999999999 9999998
Q ss_pred CCCCccccCCCcccCCCcceeEEEEcCCCC-EEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCc
Q psy12802 253 PSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR 331 (1637)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (1637)
...............|...|.+++|+|+++ ++++++.||.|++||+..+...... ...+... ..... ..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~g~~~--~~~~~--~~ 312 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK------DSEGIEM--GVAGS--VS 312 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C------CTTSCCC--CCCCE--EE
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc------cCCCCcc--ccccc--cc
Confidence 654431111111226778999999999998 8999999999999999654322100 0000000 00000 01
Q ss_pred eeEEecccCceeeEEEEecCceEEE--EeCCCcEEEeecccc
Q psy12802 332 GVILKSQYGYEITDVAIMGNDRYLV--ARTPDTLLLGDLHRN 371 (1637)
Q Consensus 332 ~~~~~~~~~~~i~~v~~s~~~~~lv--~~~~~~i~i~d~~~~ 371 (1637)
.+.....+...|++++|+|++++++ ++.|+.|++||+.+.
T Consensus 313 ~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 2222223345899999999987765 477999999998753
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.4e-29 Score=299.17 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=192.5
Q ss_pred cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
+..+|++++|+|+|++|++|+.|+.|++||+.++ ..+.+....+|...|++++|+|+++ +++++.|++|++||+.++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN--GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT--EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC--ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4568999999999999999999999999999863 1145556668999999999999999 999999999999999998
Q ss_pred c----eeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc-CCCCcEEEEecCC--eEEEEe
Q psy12802 124 K----TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSWPAG--YILAAG 196 (1637)
Q Consensus 124 ~----~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~-~~~~v~~~~~~~~--~l~~~~ 196 (1637)
. ...+.+|...|.+++|+|+++.|++|+.|++|++||+...... .....+.. |...|.+++|+|+ .+++++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--WVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C--CCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc--eeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 7 3677899999999999999999999999999999999874311 24566777 9999999999984 899999
Q ss_pred cCCeEEEEeCC-------------------CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCC
Q psy12802 197 SDRIVTIYESD-------------------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS 256 (1637)
Q Consensus 197 ~d~~i~iwd~~-------------------~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~ 256 (1637)
.|+.|++||.. ++++..+ .|...|.+++|+|+|++|++++.|+ |++||+.....
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 99999999932 3334333 2667899999999999999999999 99999987654
Q ss_pred ccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 257 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
... .......|...|.+++|+|+|++|++|+.++.+ +|+..
T Consensus 240 ~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 240 PPR-ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEE-ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred cce-eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 100 012334567789999999999999988766665 77664
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.7e-28 Score=284.22 Aligned_cols=239 Identities=17% Similarity=0.173 Sum_probs=195.9
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------CcccceEEEEECC--CCCeEEEEECCCeEEEEE
Q psy12802 6 YTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG---------RKSYVVKGLAFSP--DSTKLAVAQSDNIIFIYK 74 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~---------~h~~~V~~~~~sp--d~~~la~~~~d~~i~iw~ 74 (1637)
....|...|++++|+|||++|++++.|++|++||+.++ .|...|++++|+| ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 34568999999999999999999999999999998765 2789999999986 489999999999999999
Q ss_pred cCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEEcCCCce----eeecccCCcEEEEEEecC----
Q psy12802 75 LGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAHVKANKT----QTLYASNSFVVALCLNVR---- 143 (1637)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~v~~l~~s~~---- 143 (1637)
+.++ .........+|...|.+++|+|+ +. +++++.|++|++||+.++.. ..+.+|...|.+++|+|+
T Consensus 88 ~~~~--~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 88 EENG--TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp CSSS--CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred CCCC--cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 9864 12234445679999999999998 67 99999999999999987632 456789999999999998
Q ss_pred -------------CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC------eEEEEecCCeEEEE
Q psy12802 144 -------------GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG------YILAAGSDRIVTIY 204 (1637)
Q Consensus 144 -------------g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~------~l~~~~~d~~i~iw 204 (1637)
++.|++|+.|++|++||+...... .+...+.+|...|.+++|+|+ .|++++.|++|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 478999999999999999753211 356678899999999999984 59999999999999
Q ss_pred e-CCC---c-eeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCC
Q psy12802 205 E-SDG---R-VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 205 d-~~~---~-~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~ 253 (1637)
| .++ . ....+. .|...|.+++|+|+|+.|++++.|+ |++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~-----~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLH-----KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEE-----ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhh-----cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9 331 1 122233 3556899999999999999999999 99999764
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-29 Score=296.15 Aligned_cols=325 Identities=12% Similarity=0.071 Sum_probs=238.2
Q ss_pred CCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcc
Q psy12802 90 IQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNF 168 (1637)
Q Consensus 90 ~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~ 168 (1637)
.-...|.+++|||||+ +++++.|++|+ |...+ ..+.+|...|.+++|+|+| .++.+.+|+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~----- 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ----- 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC--SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS-----
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc--ceecCCCccEEEEEECCCC-------CcceEEEEeCCC-----
Confidence 3467899999999999 99999999999 75555 4457999999999999999 456655555432
Q ss_pred cccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-
Q psy12802 169 DQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 245 (1637)
Q Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~- 245 (1637)
.....+ .|...|.+++|||+ .+++++.||.|++||..+ ++..+. +...-....+.+++|||||++|++|+.|+
T Consensus 77 -~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 77 -NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp -SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred -ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 222333 45889999999994 899999999999999555 555555 42211244699999999999999999999
Q ss_pred EEEEEeCCCCCc------cccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeE
Q psy12802 246 IKLFAWSPSKSV------WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQV 319 (1637)
Q Consensus 246 i~i~~~~~~~~~------~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 319 (1637)
|++|+...+... ..........|...|.+++|+||| +++++.|++|++||+..+....
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-------------- 216 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-------------- 216 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------
Confidence 999999875420 000001113466799999999999 8889999999999996443100
Q ss_pred EEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEe
Q psy12802 320 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFN 399 (1637)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1637)
....+...+...|.+++|+ |..++++.+++|++||+.+++......
T Consensus 217 -----------~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--------------------- 262 (588)
T 2j04_A 217 -----------VSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--------------------- 262 (588)
T ss_dssp -----------CEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC---------------------
T ss_pred -----------ceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc---------------------
Confidence 0011222233479999999 466666668999999988765532211
Q ss_pred CCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeee--ccCCCeEEeeccCCcEEEehhhhhhhh
Q psy12802 400 AGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFESVLKRTI 477 (1637)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~--s~dg~~la~g~~dg~v~lw~~~~~~~~ 477 (1637)
+|...|.+++| ||||+.|++++.||+ ++|....
T Consensus 263 ----------------------------------------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---- 297 (588)
T 2j04_A 263 ----------------------------------------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---- 297 (588)
T ss_dssp ----------------------------------------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred ----------------------------------------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence 46677889999 999999999999999 8887520
Q ss_pred hcCceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeeccccccccCcccccccccccccccccC
Q psy12802 478 WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLNERKQVHSQQ 557 (1637)
Q Consensus 478 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 557 (1637)
+. ++|
T Consensus 298 --------------------------------------------------------------------------~~-~sp 302 (588)
T 2j04_A 298 --------------------------------------------------------------------------LH-VTA 302 (588)
T ss_dssp --------------------------------------------------------------------------EE-EEC
T ss_pred --------------------------------------------------------------------------EE-ECC
Confidence 11 556
Q ss_pred CCceEEEeeccceEEEEEccCCcceEEecccCCccEEEeCcCcceeEeec
Q psy12802 558 ENKKLAYLLDLHTICVIDLITNLPTLHINHDSKIDWLELNETAHKLLYRD 607 (1637)
Q Consensus 558 d~~~la~~~~~~~i~v~dl~~~~~~~~~~~~~~i~~l~~s~~g~~L~~~~ 607 (1637)
|+..+++. ++++.+|+..++. +..+.++..|.++.+||||+.+|+++
T Consensus 303 d~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 303 DNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp CCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEE
Confidence 66655553 6788888865444 44555667788999999999998764
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=5.9e-27 Score=275.96 Aligned_cols=266 Identities=17% Similarity=0.248 Sum_probs=219.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 14 LQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR---------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~~d~~i~vwd~~~~~---------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
++.++|||++ +|++|. |++|+|||+.+++ |...|++++|+|++++|++|+.||+|++|++.++ +.
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----ee
Confidence 4779999987 677665 8999999998875 5678999999999999999999999999999885 56
Q ss_pred EeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEe
Q psy12802 85 ICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161 (1637)
Q Consensus 85 ~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~ 161 (1637)
+....+|...+.++.+ ++. +++++.++.+++|+..++.. ..+.+|...+.++.++++++.+++++.||+|++||+
T Consensus 102 ~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 6667788888877554 567 99999999999999988765 778899999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCCCcEEEEecCC---e--EEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCC
Q psy12802 162 TEDASNFDQQQGRVVQHPVPPYALSWPAG---Y--ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG 235 (1637)
Q Consensus 162 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~--l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 235 (1637)
.+..... ........+...|.++.++|. . +++++.+++|++|| ..+....... +...+..+.|+|++
T Consensus 180 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~------~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 180 APGEGGW-VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------AHSQVCSILWSPHY 252 (318)
T ss_dssp SCBTTBS-CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE------CSSCEEEEEEETTT
T ss_pred CCCcccc-cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc------ceeeeeeeeecccc
Confidence 8743210 233445578889999999873 2 34567789999999 5555555444 44579999999999
Q ss_pred CEEEEEe--cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 236 QAVVVGS--YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 236 ~~l~~~~--~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
..+++++ .|+ |++||+.+.... .....|...|++++|+|||++|++|+.||+|++||+.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~-----~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKV-----AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred cceEEEEEcCCCEEEEEECCCCcEE-----EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 9988765 567 999999876653 2334578899999999999999999999999999984
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=296.71 Aligned_cols=284 Identities=12% Similarity=0.183 Sum_probs=217.9
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------------------cc------------cceEEEEECCCC-
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------------------KS------------YVVKGLAFSPDS- 58 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------------------h~------------~~V~~~~~spd~- 58 (1637)
+...|++++|||||++|++|+.||.|++||+.+++ |. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 45799999999999999999999999999988654 55 779999999998
Q ss_pred -CeEEEEECCCeEEEEEcCCCCCCc------------------------------------eeEeeccCCCCCEEEEEEc
Q psy12802 59 -TKLAVAQSDNIIFIYKLGDDWGDK------------------------------------KVICNKFIQQCPVTTMVWL 101 (1637)
Q Consensus 59 -~~la~~~~d~~i~iw~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~v~~s 101 (1637)
..|++++.|++|++||+.++.... .......+|...|++++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 799999999999999987521000 0001135799999999999
Q ss_pred CCCC-EEEEeCCCcEEEEEcCC-Cce-e-------eecccCCcEEEEEEecCC-CeEEEEeCCCcEEEEEecCCCCcccc
Q psy12802 102 ADGP-IIYGQSDGKIKAAHVKA-NKT-Q-------TLYASNSFVVALCLNVRG-AGVLSGHADGSIVRYYVTEDASNFDQ 170 (1637)
Q Consensus 102 ~~~~-l~~~~~d~~v~vwd~~~-~~~-~-------~~~~~~~~v~~l~~s~~g-~~l~s~~~dg~i~iwd~~~~~~g~~~ 170 (1637)
|+++ +++| .|+.|++||+.+ ++. . .+.+|...|.+++|+|++ +.|++|+.||+|++||+++.... ..
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~ 264 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC-DR 264 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS-CT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc-cc
Confidence 9999 8887 899999999984 333 2 366899999999999998 99999999999999999874210 01
Q ss_pred cccccccCCC------------CcEEEEecCC--eEEEEecCCeEEEEe-CC-CceeEEeeccCCCCCC-----------
Q psy12802 171 QQGRVVQHPV------------PPYALSWPAG--YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKE----------- 223 (1637)
Q Consensus 171 ~~~~~~~~~~------------~v~~~~~~~~--~l~~~~~d~~i~iwd-~~-~~~~~~~~~~~~~~~~----------- 223 (1637)
....+..|.. .|.+++|+|+ .+++++. +.|++|| .. ++++..+..+.. ...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY-LRSKLCSLYENDCI 342 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG-GTTTHHHHHHTSGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc-cccccccccccccc
Confidence 1466667765 9999999984 7777777 9999999 54 888888875421 000
Q ss_pred ccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCC---------------------------CcccCCCcceeEE
Q psy12802 224 REFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQP---------------------------NKTIPNLYTISAL 275 (1637)
Q Consensus 224 ~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~i~~l 275 (1637)
..+..++|+|+|++|++|+.|+ |++||+..+........ .........|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 0134599999999999999999 99999987653210000 0012234578999
Q ss_pred EEcCCCCEEEEEecCCcEEEEEc
Q psy12802 276 SWKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 276 ~~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
+|+|+|+.|++++.++ +++|..
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEEC
T ss_pred EECCCCCEEEEEecce-eeeecc
Confidence 9999999999988775 777764
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.2e-27 Score=288.43 Aligned_cols=295 Identities=12% Similarity=0.113 Sum_probs=226.1
Q ss_pred CcccceEEEEECCC----CCeEEEEECCCeEEEEEcCCCCCCceeEe-eccCCCCCEEEEEEcCC----CC-EEEEeCCC
Q psy12802 44 RKSYVVKGLAFSPD----STKLAVAQSDNIIFIYKLGDDWGDKKVIC-NKFIQQCPVTTMVWLAD----GP-IIYGQSDG 113 (1637)
Q Consensus 44 ~h~~~V~~~~~spd----~~~la~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~v~~s~~----~~-l~~~~~d~ 113 (1637)
+|...|++++|+|+ ...+++++.++.|++||+.++........ ....|...|++++|+|+ ++ +++++.||
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 58999999999995 45666777788999999986522212111 11236789999999999 67 99999999
Q ss_pred cEEEEEcCCCce-eeecccCCcEEEEEEec-CCCeEEEEeCCCcEEEEEecCCCCccccccccc---ccCCCCcEEEEec
Q psy12802 114 KIKAAHVKANKT-QTLYASNSFVVALCLNV-RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRV---VQHPVPPYALSWP 188 (1637)
Q Consensus 114 ~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~---~~~~~~v~~~~~~ 188 (1637)
.|++||+.+++. ..+.+|...|.+++|+| +++.|++|+.||+|++||+.+. .....+ .+|...|.+++|+
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-----TLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-----EEEEEECSTTSCSSCEEEEEEC
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-----eEEEEecccccccCceeEEEEC
Confidence 999999999988 77889999999999999 9999999999999999999874 455555 6899999999999
Q ss_pred CC--eEEEEecCCeEEEEe-CCCceeEEeecc-----------------------CCCCCCccEEEEEECCCCCEEEEEe
Q psy12802 189 AG--YILAAGSDRIVTIYE-SDGRVHRIFDYT-----------------------APHYKEREFTVACSSPSGQAVVVGS 242 (1637)
Q Consensus 189 ~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~-----------------------~~~~~~~~i~~~~~sp~g~~l~~~~ 242 (1637)
|+ .+++++.||.|++|| .+++....+... ....|...|.+++|+ ++.+++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 84 899999999999999 555443332210 000267789999999 77999999
Q ss_pred cCc-EEEEEeCCCCCccccC---------CCcccCCCcceeEEEEcCC--CCEEEEEecCCcEEEEEccccceeeeCcEE
Q psy12802 243 YDN-IKLFAWSPSKSVWEEQ---------PNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRTIWKGKFE 310 (1637)
Q Consensus 243 ~d~-i~i~~~~~~~~~~~~~---------~~~~~~~~~~i~~l~~spd--g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 310 (1637)
.|+ |++||+.......... ......|...|.+++|+|+ +++|++|+.||.|++||+.+++....
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---- 324 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA---- 324 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC----
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc----
Confidence 999 9999998765421110 1112235567999999999 99999999999999999976542210
Q ss_pred EEEecCCeEEEecCCCCCCCceeEEecc-cCceeeEEEEecCceEEEE-eCCCcEEEeecc
Q psy12802 311 MIYVSPSQVLVKPLSGESKGRGVILKSQ-YGYEITDVAIMGNDRYLVA-RTPDTLLLGDLH 369 (1637)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~ 369 (1637)
....+..+ ....|++++|+|+++++++ +.|+.|++||+.
T Consensus 325 --------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 325 --------------------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp --------------------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred --------------------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00111111 1348999999999887776 789999999975
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.2e-27 Score=292.37 Aligned_cols=311 Identities=13% Similarity=0.177 Sum_probs=224.7
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC-------CCceeEeeccCCC------------CCEEEEEEcCCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW-------GDKKVICNKFIQQ------------CPVTTMVWLADG 104 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~------------~~v~~v~~s~~~ 104 (1637)
.+.+.|++++|+|+|++||+|+.||.|+||++.++. ...+......+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 368899999999999999999999999999998752 1122455566787 889999999998
Q ss_pred --C-EEEEeCCCcEEEEEcCCCcee----------------------------------------e-ecccCCcEEEEEE
Q psy12802 105 --P-IIYGQSDGKIKAAHVKANKTQ----------------------------------------T-LYASNSFVVALCL 140 (1637)
Q Consensus 105 --~-l~~~~~d~~v~vwd~~~~~~~----------------------------------------~-~~~~~~~v~~l~~ 140 (1637)
. +++++.|++|++||+.++... . ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 6 999999999999999774431 1 3679999999999
Q ss_pred ecCCCeEEEEeCCCcEEEEEecCCCCccccccc-------ccccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CCCc
Q psy12802 141 NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQG-------RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGR 209 (1637)
Q Consensus 141 s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~-------~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~ 209 (1637)
+|+|+.|++| .||+|++||+.... .... .+.+|...|.+++|+|+ .+++|+.||.|++|| .+++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 9999999999 79999999998432 2332 46789999999999983 799999999999999 6666
Q ss_pred e----eEEeeccCCC-------CCCccEEEEEECCCCCEEEEEecCc-EEEEEeCC-CCCccccCCCcccCCCc------
Q psy12802 210 V----HRIFDYTAPH-------YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP-SKSVWEEQPNKTIPNLY------ 270 (1637)
Q Consensus 210 ~----~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~-~~~~~~~~~~~~~~~~~------ 270 (1637)
. +..+..+... .+...|.+++|+|+|++|++++. + |++||+.. ..... ....|..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~-----~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE-----TYQVHEYLRSKLC 334 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC-----CEESCGGGTTTHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc-----eeecccccccccc
Confidence 5 5666643210 01128999999999999999999 7 99999986 33221 1111211
Q ss_pred ---------ceeEEEEcCCCCEEEEEecCCcEEEEEccccceeee-CcE---E-EEEecCCeEEEecCCCCCCCceeEE-
Q psy12802 271 ---------TISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-GKF---E-MIYVSPSQVLVKPLSGESKGRGVIL- 335 (1637)
Q Consensus 271 ---------~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~-~~~---~-~~~~~~~~~~v~~~~~~~~~~~~~~- 335 (1637)
.+..++|+|+|++|++|+.||.|++||+.+++.+.- ... . .....+..+.... ... ......
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~ 411 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG-KRK--KDEISVD 411 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS-CCC--TTCEEGG
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC-Ccc--ccccccc
Confidence 134599999999999999999999999987765310 000 0 0000000000000 000 000111
Q ss_pred ecccCceeeEEEEecCceEEEEeCCCcEEEeec
Q psy12802 336 KSQYGYEITDVAIMGNDRYLVARTPDTLLLGDL 368 (1637)
Q Consensus 336 ~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~ 368 (1637)
.......|..++|+|++.++++++.+.+++|.-
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred ccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 112334789999999999999988888999864
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=3.5e-27 Score=281.13 Aligned_cols=275 Identities=8% Similarity=0.004 Sum_probs=227.4
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC----------cccceEEEEECCCCC-eEEEEECCCeEEEE
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR----------KSYVVKGLAFSPDST-KLAVAQSDNIIFIY 73 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~----------h~~~V~~~~~spd~~-~la~~~~d~~i~iw 73 (1637)
+....|...|++++|+|+|.+|++++.|+.|++|++.++. |...|++++|+|+++ +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 4456799999999999999999999999999999998665 678999999999999 99999999999999
Q ss_pred Ec-CCCCCCceeEeeccC--CCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC---------CceeeecccCCcEEEEEE
Q psy12802 74 KL-GDDWGDKKVICNKFI--QQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA---------NKTQTLYASNSFVVALCL 140 (1637)
Q Consensus 74 ~~-~~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~---------~~~~~~~~~~~~v~~l~~ 140 (1637)
|+ .++ . .....+ |...|.+++|+| +. +++++.|+.|++||+++ ++......|...|.+++|
T Consensus 85 d~~~~~----~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 85 DLIGSP----S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp CSSSSS----S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EeccCC----c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 99 764 1 234456 999999999999 77 99999999999999988 766333348999999999
Q ss_pred ecCCCeEEEEeCCCcEEEEEecC-CCCcccccccccccCCCCcEEEEecC-C--eEEEEecCCeEEEEe-CCC------c
Q psy12802 141 NVRGAGVLSGHADGSIVRYYVTE-DASNFDQQQGRVVQHPVPPYALSWPA-G--YILAAGSDRIVTIYE-SDG------R 209 (1637)
Q Consensus 141 s~~g~~l~s~~~dg~i~iwd~~~-~~~g~~~~~~~~~~~~~~v~~~~~~~-~--~l~~~~~d~~i~iwd-~~~------~ 209 (1637)
+|++ +++++.||.|++||++. ... ........|...+.+++|+| + .+++++.||.|++|+ ..+ +
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred cCCc--EEEEeCCCeEEEEECCccccc---cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 9988 99999999999999987 321 23334557889999999998 4 899999999999999 443 6
Q ss_pred eeEEeeccCC----CCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCC-CcceeEEEEcCCCCE
Q psy12802 210 VHRIFDYTAP----HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN-LYTISALSWKRDGSR 283 (1637)
Q Consensus 210 ~~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~ 283 (1637)
....+..+.. ..+...|.+++|+|+|++|++++.|+ |++||+...... .....| ...|.+++ |+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI-----KNFAKFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-----EECCCCSSSEEEEEE--ECSSE
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh-----hhhhcccCCCceEec--CCCCe
Confidence 6677764321 01344899999999999999999999 999999876543 222344 77899999 99999
Q ss_pred EEEEecCCc-EEEEE
Q psy12802 284 IACGGLCGS-VELFE 297 (1637)
Q Consensus 284 l~~~~~dg~-v~iwd 297 (1637)
|++++.||. .+.|.
T Consensus 307 l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 307 LCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEECTHHHHCSS
T ss_pred EEEEecCCccccccc
Confidence 999999998 44443
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.3e-26 Score=282.02 Aligned_cols=280 Identities=15% Similarity=0.211 Sum_probs=222.8
Q ss_pred ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK 124 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~ 124 (1637)
...+.++.|++ ..+++++.|+.|++|++.++ .........|...|++++|+|+++ +++|+.||.|++||+.+++
T Consensus 93 ~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 93 DYYLNLLDWSN--LNVVAVALERNVYVWNADSG---SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp CTTCBCEEECT--TSEEEEEETTEEEEEETTTC---CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CceEEEEeecC--CCEEEEECCCeEEEeeCCCC---cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 33456677775 56888899999999999875 222223334889999999999999 9999999999999999998
Q ss_pred e-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeE
Q psy12802 125 T-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIV 201 (1637)
Q Consensus 125 ~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i 201 (1637)
. ..+.+|...|.+++| +++.+++|+.||.|++||++... .....+.+|...|.+++|+|+ .+++++.|+.|
T Consensus 168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN----HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc----ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 7 888899999999999 46799999999999999998542 567788899999999999984 89999999999
Q ss_pred EEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCC-EEEEEe--cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEE
Q psy12802 202 TIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGS--YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS 276 (1637)
Q Consensus 202 ~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~--~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 276 (1637)
++|| .+++++..+. .|...|.+++|+|++. .+++++ .|+ |++||+...... ..+.+...|.+++
T Consensus 242 ~iwd~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~------~~~~~~~~v~~~~ 310 (401)
T 4aez_A 242 QIWDARSSIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV------NTVDAGSQVTSLI 310 (401)
T ss_dssp EEEETTCSSEEEEEC-----CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE------EEEECSSCEEEEE
T ss_pred EEccCCCCCccEEec-----CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE------EEEeCCCcEEEEE
Confidence 9999 7788887776 4666899999999775 555554 577 999999876543 3344567899999
Q ss_pred EcCCCCEEEEE--ecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceE
Q psy12802 277 WKRDGSRIACG--GLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY 354 (1637)
Q Consensus 277 ~spdg~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 354 (1637)
|+|+++.++++ +.||.|++||+.+++.... ..+ ..+...|.++.|+|++++
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~--------------------------~~~-~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ--------------------------VDI-PAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEEEEE--------------------------EEE-ECCSSCCCEEEECTTSSE
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccceeE--------------------------EEe-cCCCCCEEEEEECCCCCE
Confidence 99999999984 4899999999865432111 011 122347999999999887
Q ss_pred EEE-eCCCcEEEeecccccee
Q psy12802 355 LVA-RTPDTLLLGDLHRNLLS 374 (1637)
Q Consensus 355 lv~-~~~~~i~i~d~~~~~~~ 374 (1637)
+++ +.|+.|++||+.+++..
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECTTSEEEEEECCC----
T ss_pred EEEEeCCCcEEEEECCCCccc
Confidence 776 77999999999877654
No 96
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=2.8e-26 Score=314.30 Aligned_cols=474 Identities=13% Similarity=0.059 Sum_probs=304.8
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCC------CeEEEEEcCCCC------cccce-------EEEEECCCCCeEEEEECC--
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNV------AGIWAWRGQNGR------KSYVV-------KGLAFSPDSTKLAVAQSD-- 67 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d------~~i~vwd~~~~~------h~~~V-------~~~~~spd~~~la~~~~d-- 67 (1637)
.|...+.+++|||||++|++++.+ ..|++|+..++. |...+ .+++|||||+.+++++.+
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 467889999999999999987543 479999998764 56667 899999999966666644
Q ss_pred ----CeEEEEEcCCCCCCc---------------------------------------------eeEeeccCCCCCEEEE
Q psy12802 68 ----NIIFIYKLGDDWGDK---------------------------------------------KVICNKFIQQCPVTTM 98 (1637)
Q Consensus 68 ----~~i~iw~~~~~~~~~---------------------------------------------~~~~~~~~~~~~v~~v 98 (1637)
..|.+|++.++.... .......+|...+.++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~ 209 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 209 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE
T ss_pred CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce
Confidence 357777765431000 0001113567788899
Q ss_pred EEcCCCC-EEEEeCCCcEEEEEcC--CCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccc
Q psy12802 99 VWLADGP-IIYGQSDGKIKAAHVK--ANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRV 175 (1637)
Q Consensus 99 ~~s~~~~-l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~ 175 (1637)
.|+++ . +++++.++++.+|.+. ++....+..|.. +..++|||||+.++++. ++.|.+|++.. ..+..+
T Consensus 210 ~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~-~~~i~~~d~~~------~~l~~l 280 (1045)
T 1k32_A 210 VIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSK-GGSIYIFNPDT------EKIEKI 280 (1045)
T ss_dssp EEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEE-TTEEEEECTTT------CCEEEC
T ss_pred EEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEe-CCEEEEecCCc------eEeeee
Confidence 99988 6 6677888989999765 444466666653 56779999999999884 89999999843 222233
Q ss_pred cc-----------CCCCcEEEEec-CC--eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCc-cEEEEEECCCCCEEEE
Q psy12802 176 VQ-----------HPVPPYALSWP-AG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKER-EFTVACSSPSGQAVVV 240 (1637)
Q Consensus 176 ~~-----------~~~~v~~~~~~-~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~ 240 (1637)
.. |...+.+++|+ |+ .+++++ ++.|.+|+..+.....+. .+.. .+..++|+ ||+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP-----EPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS-----CCSCEEEEEECSS-SEEEEEE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc-----CCCcceEEeeeEc-CCCeEEE
Confidence 33 44578999999 95 566665 889999994443333443 2444 78999999 9999999
Q ss_pred EecCc-EE-EEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCe
Q psy12802 241 GSYDN-IK-LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQ 318 (1637)
Q Consensus 241 ~~~d~-i~-i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 318 (1637)
++.+. +. +|+....... ....+...+.+++|||||++|++++.++.|++||+.+++...
T Consensus 354 ~s~~~~l~~~~d~~~~~~~------~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~------------- 414 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTGKAE------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV------------- 414 (1045)
T ss_dssp EETTEEEEEEEETTTCCEE------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------
T ss_pred EECCCceEEEEECCCCCce------EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE-------------
Confidence 98866 77 7787654321 112455689999999999999999999999999997654311
Q ss_pred EEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEe-CC----------CcEEEeeccccceeeeecCCCCCCcee
Q psy12802 319 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TP----------DTLLLGDLHRNLLSEVLWPDSGRNEKF 387 (1637)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~-~~----------~~i~i~d~~~~~~~~~~~~~~~~~~~~ 387 (1637)
+.......+..++|||+|+++++. .+ +.|++||+.+++...+
T Consensus 415 ----------------~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l----------- 467 (1045)
T 1k32_A 415 ----------------IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA----------- 467 (1045)
T ss_dssp ----------------EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-----------
T ss_pred ----------------eccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe-----------
Confidence 111122357889999999888763 32 3889998876543211
Q ss_pred EecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcceeeeeeeccCCCeEEeeccCCcEE
Q psy12802 388 YFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 467 (1637)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~I~~l~~s~dg~~la~g~~dg~v~ 467 (1637)
..|...+.+++|||||++|++++.++...
T Consensus 468 ---------------------------------------------------~~~~~~~~~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 468 ---------------------------------------------------TTENSHDYAPAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp ---------------------------------------------------SCSSSBEEEEEECTTSCEEEEEESCCCCC
T ss_pred ---------------------------------------------------eCCCcccCCceEcCCCCEEEEEecccCCc
Confidence 02234456789999999999999988888
Q ss_pred EehhhhhhhhhcC--ceeEEEecCCceEEeeccCCCCCceeEEeeccceeeeeEEEecCcceEeeccccccccCcccccc
Q psy12802 468 LFESVLKRTIWKG--KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISV 545 (1637)
Q Consensus 468 lw~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~i~i~~~~~~l~~~~~~~~~~~~~~~~~ 545 (1637)
+|+.......... ....+.+++.......+.. +..+.....+. -++ ...... .+...
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~d--~~g-------~~~~~~--~l~~~ 555 (1045)
T 1k32_A 497 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP----------RSMTSEAGEYD--LND-------MYKRSS--PINVD 555 (1045)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC----------GGGSCCCCCCC--CTT-------GGGGCE--ECSCC
T ss_pred CcchhccccccccCceeEEEEeCCCCCCccccCc----------Ccccccccccc--ccC-------HhHceE--EcCCC
Confidence 8875311100000 0000101110000000000 00000000000 000 000000 00000
Q ss_pred cccccccccccCCCceEEE-------------eeccceEEEEEccCCcceEEecccCCccEEEeCcCcceeEeecccceE
Q psy12802 546 RLNERKQVHSQQENKKLAY-------------LLDLHTICVIDLITNLPTLHINHDSKIDWLELNETAHKLLYRDKKMRL 612 (1637)
Q Consensus 546 ~~~~~~~~~~s~d~~~la~-------------~~~~~~i~v~dl~~~~~~~~~~~~~~i~~l~~s~~g~~L~~~~~~~~~ 612 (1637)
......+. ++|||++++. .....+|.+||+.+++..... ..+..+.+||||++|++.+.+ .+
T Consensus 556 ~~~~~~~~-~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~~~~-~i 630 (1045)
T 1k32_A 556 PGDYRMII-PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDD-GK 630 (1045)
T ss_dssp CBCEEEEE-ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETT-SC
T ss_pred CCChhheE-EcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEEcCC-cE
Confidence 01112233 7888876664 123568889999888753322 567889999999999988766 79
Q ss_pred EEEeccccc
Q psy12802 613 TLLDIRTSE 621 (1637)
Q Consensus 613 ~l~d~~t~~ 621 (1637)
.+||+.+++
T Consensus 631 ~~~d~~~~~ 639 (1045)
T 1k32_A 631 IYTFPLEKP 639 (1045)
T ss_dssp EEEEESSCT
T ss_pred EEEeCccCc
Confidence 999998876
No 97
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1e-26 Score=285.11 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=224.3
Q ss_pred cccceEEEEECC-CCCeEEEEECCCeEEEEEcCCCCCCceeEee---------ccCCCCCEEEEEEcC-CCC-EEEEeCC
Q psy12802 45 KSYVVKGLAFSP-DSTKLAVAQSDNIIFIYKLGDDWGDKKVICN---------KFIQQCPVTTMVWLA-DGP-IIYGQSD 112 (1637)
Q Consensus 45 h~~~V~~~~~sp-d~~~la~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~~~~~v~~v~~s~-~~~-l~~~~~d 112 (1637)
|...|++++|+| ++++|++|+.||.|++||+.++......... ..+|...|.+++|+| ++. +++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 899999999999 9999999999999999999876333222211 125899999999999 666 9999999
Q ss_pred CcEEEEEcCCCceeeecccCCcEEEEEEecC---CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC
Q psy12802 113 GKIKAAHVKANKTQTLYASNSFVVALCLNVR---GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA 189 (1637)
Q Consensus 113 ~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 189 (1637)
|.|++||+.+++......+...+.++.|+|. +..+++++.||.|++||+.+. ..+..+..|...|.+++|+|
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-----SCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-----CCCEEECCCCSCEEEEEECS
T ss_pred CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-----ceeeeecCCCCcEEEEEECC
Confidence 9999999999998666668889999999995 448999999999999999874 66778889999999999998
Q ss_pred C---eEEEEecCCeEEEEe-CCCc-eeEEeeccCC----------CCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCC
Q psy12802 190 G---YILAAGSDRIVTIYE-SDGR-VHRIFDYTAP----------HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 190 ~---~l~~~~~d~~i~iwd-~~~~-~~~~~~~~~~----------~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~ 253 (1637)
+ .+++++.||.|++|| ..+. ++..+..+.. ..|...|.+++|+|+|+.|++++.|+ |++||+..
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 4 488999999999999 4443 4444422110 14778899999999999999999999 99999987
Q ss_pred CCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCcee
Q psy12802 254 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGV 333 (1637)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 333 (1637)
..................+........+..+++++.+|.|++||+.+++.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--------------------------- 329 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM--------------------------- 329 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE---------------------------
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee---------------------------
Confidence 66432111111111112222223333455677788899999999976543211
Q ss_pred EEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccce
Q psy12802 334 ILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 334 ~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~ 373 (1637)
...+...|++++|+|+++++++ +.|+.|++||+.+.+.
T Consensus 330 --~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 330 --LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp --ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred --eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 1122347999999999877776 7899999999987654
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=4.2e-27 Score=281.64 Aligned_cols=286 Identities=10% Similarity=0.120 Sum_probs=207.7
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----------CcccceEEEEECC--CCCeEEEEECCCeEE
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG-----------RKSYVVKGLAFSP--DSTKLAVAQSDNIIF 71 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~-----------~h~~~V~~~~~sp--d~~~la~~~~d~~i~ 71 (1637)
++...|...|++++|+|+|++|++++.||.|++||+.++ .|...|++++|+| |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456789999999999999999999999999999999865 2788999999999 699999999999999
Q ss_pred EEEcCCCCCCc-----eeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEEcCCCce-eee-------------c
Q psy12802 72 IYKLGDDWGDK-----KVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAHVKANKT-QTL-------------Y 129 (1637)
Q Consensus 72 iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd~~~~~~-~~~-------------~ 129 (1637)
+||+.++.... +.+.....|...|.+++|+|+ +. +++++.||.|++||+.+++. ..+ .
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998752211 445566689999999999999 88 99999999999999998875 222 2
Q ss_pred ccCCcEEEEEEecC---CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC------eEEEEecCCe
Q psy12802 130 ASNSFVVALCLNVR---GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG------YILAAGSDRI 200 (1637)
Q Consensus 130 ~~~~~v~~l~~s~~---g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~------~l~~~~~d~~ 200 (1637)
+|...+.+++|+|+ +..+++++.|+.+.+|+...... .....+.+|...|.+++|+|+ .+++++.||.
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 67889999999997 99999999999998777765422 346778889999999999985 5889999999
Q ss_pred EEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-----EEEEEeCCCCCccccCCCcccCCCcceeE
Q psy12802 201 VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-----IKLFAWSPSKSVWEEQPNKTIPNLYTISA 274 (1637)
Q Consensus 201 i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----i~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (1637)
|++|| ..+....... ...........++....+..+..++ +.+|+...... ......|...|++
T Consensus 242 i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~ 311 (351)
T 3f3f_A 242 IRIFKITEKLSPLASE-----ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL-----LSEHDDHNGEVWS 311 (351)
T ss_dssp EEEEEEEECC--------------------------------------------CCSEEEEE-----EEEECTTSSCEEE
T ss_pred EEEEeCCCCcCccccC-----CcccceeccCCCcccccccccccccccceeeeecccccccE-----EEEEecccccEEE
Confidence 99999 4444333222 1222344444555555555554443 22222111111 1222347789999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEEccccce
Q psy12802 275 LSWKRDGSRIACGGLCGSVELFESVLKRT 303 (1637)
Q Consensus 275 l~~spdg~~l~~~~~dg~v~iwd~~~~~~ 303 (1637)
++|+|++++|++++.||.|++|++.+++.
T Consensus 312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred EEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 99999999999999999999999976543
No 99
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=2.9e-27 Score=282.13 Aligned_cols=286 Identities=9% Similarity=0.063 Sum_probs=205.8
Q ss_pred ccceEEEEECCCCCeEEEEECCC-------eEEEEEcCCCCCCc------eeEeeccCCCCCEEEEEEcCCCCEEE----
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSDN-------IIFIYKLGDDWGDK------KVICNKFIQQCPVTTMVWLADGPIIY---- 108 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d~-------~i~iw~~~~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~l~~---- 108 (1637)
..+|++++|+|||++|++|+.+. .|++|++..+.... .......+|...|.+++++++. +++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~-~~~g~~~ 92 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI-ILVGCNE 92 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE-EEEECCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE-EEEEECC
Confidence 56899999999999999987543 59999997653221 1112345677888888765421 444
Q ss_pred -------EeCCCcEEEEEcCCCce--ee--------ecccCCcEEEEEEecCCCeEEEEe--CCCcEEEEEecCCCCccc
Q psy12802 109 -------GQSDGKIKAAHVKANKT--QT--------LYASNSFVVALCLNVRGAGVLSGH--ADGSIVRYYVTEDASNFD 169 (1637)
Q Consensus 109 -------~~~d~~v~vwd~~~~~~--~~--------~~~~~~~v~~l~~s~~g~~l~s~~--~dg~i~iwd~~~~~~g~~ 169 (1637)
++.|+.+++|++.+... .. ...+...+.+++|||||+++++++ .|++|++||+.+.
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----- 167 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----- 167 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-----
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-----
Confidence 34578899999876542 11 123456799999999999987654 6899999999873
Q ss_pred ccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-
Q psy12802 170 QQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 245 (1637)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~- 245 (1637)
.++..+ .|...|.+++|+|+ .+++++ ++.+.+|+ .+++.+...... .|...+.+++|+|+|+.+++++.++
T Consensus 168 ~~~~~~-~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 168 TEKFEI-ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDF---DKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp EEEEEE-ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCC---CTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred cEEEEe-CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecC---CCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 455554 47889999999995 566666 45555665 777766544322 4677899999999999999998776
Q ss_pred ----EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEE
Q psy12802 246 ----IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV 321 (1637)
Q Consensus 246 ----i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v 321 (1637)
+++|+....... .........|...|++++|||||++|++|+.||+|+|||+.+++.+..
T Consensus 243 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--------------- 306 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--------------- 306 (365)
T ss_dssp CCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE---------------
T ss_pred ceeEEeecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE---------------
Confidence 444554432211 001122345667899999999999999999999999999976543211
Q ss_pred ecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeecccc
Q psy12802 322 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRN 371 (1637)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~ 371 (1637)
+...+...|++++|||+++++++ +.|++|+|||+..+
T Consensus 307 -------------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 307 -------------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -------------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -------------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 11223348999999999998887 78999999998543
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=280.51 Aligned_cols=248 Identities=17% Similarity=0.234 Sum_probs=209.6
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEEc
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAHV 120 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd~ 120 (1637)
.|...|++++|+|++++|++|+.||.|+||++..+ ..+.+....+|..+|++++|+|+ ++ +++++.||.|++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 48899999999999999999999999999999742 23555566789999999999987 78 999999999999999
Q ss_pred CCCc--e-eeecccCCcEEEEEEecC--CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC------
Q psy12802 121 KANK--T-QTLYASNSFVVALCLNVR--GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA------ 189 (1637)
Q Consensus 121 ~~~~--~-~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~------ 189 (1637)
.+++ . ..+..|...|.+++|+|+ +..|++++.||.|++||+..... .....+..|...|.++.|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---CCEEEEECCTTCEEEEEECCCC----
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---eeeEEecCCCCceEEEEEcCcccccc
Confidence 9996 3 677889999999999999 99999999999999999987532 34456678999999999987
Q ss_pred ---------CeEEEEecCCeEEEEe-CCCc----eeEEeeccCCCCCCccEEEEEECCC---CCEEEEEecCc-EEEEEe
Q psy12802 190 ---------GYILAAGSDRIVTIYE-SDGR----VHRIFDYTAPHYKEREFTVACSSPS---GQAVVVGSYDN-IKLFAW 251 (1637)
Q Consensus 190 ---------~~l~~~~~d~~i~iwd-~~~~----~~~~~~~~~~~~~~~~i~~~~~sp~---g~~l~~~~~d~-i~i~~~ 251 (1637)
..+++++.|+.|++|| ..+. ....+. .|...|.+++|+|+ +++|++++.|+ |++|++
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-----cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 3799999999999999 4444 233444 46779999999999 89999999999 999999
Q ss_pred CCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccc
Q psy12802 252 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
......+.........+...|.+++|+|+|++|++++.||.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 88654332223333446789999999999999999999999999998643
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.9e-26 Score=274.79 Aligned_cols=280 Identities=11% Similarity=0.138 Sum_probs=221.2
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEc-
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHV- 120 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~- 120 (1637)
.|...|++++|+|++++|++++.||.|++|++.++... ........|...|++++|+|+++ +++++.||.|++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 58999999999999999999999999999999875211 22333447999999999999998 788999999999999
Q ss_pred CCCceeeecc--cCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCC------cccccccccccCCCCcEEEEecCCeE
Q psy12802 121 KANKTQTLYA--SNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDAS------NFDQQQGRVVQHPVPPYALSWPAGYI 192 (1637)
Q Consensus 121 ~~~~~~~~~~--~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~------g~~~~~~~~~~~~~~v~~~~~~~~~l 192 (1637)
.+++...+.+ |...|.+++|+| +..|++++.||.|++||+++... + .++..+. |...|.+++|+|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~l 163 (342)
T 1yfq_A 88 GSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN--LNSNNTK-VKNKIFTMDTNSSRL 163 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE--SCSSSSS-SCCCEEEEEECSSEE
T ss_pred cCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC--CeeeEEe-eCCceEEEEecCCcE
Confidence 9998888888 999999999999 99999999999999999985100 1 4455555 899999999999889
Q ss_pred EEEecCCeEEEEe-CC-Cce-eEEeeccCCCCCCccEEEEEECC-CCCEEEEEecCc-EEEEEeCCC------CCccccC
Q psy12802 193 LAAGSDRIVTIYE-SD-GRV-HRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPS------KSVWEEQ 261 (1637)
Q Consensus 193 ~~~~~d~~i~iwd-~~-~~~-~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~-i~i~~~~~~------~~~~~~~ 261 (1637)
++++.|+.|++|| .+ +.. ...... .+...+.+++|+| +++.+++++.++ +++|+++.. .......
T Consensus 164 ~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 164 IVGMNNSQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred EEEeCCCeEEEEECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 9999999999999 44 433 222222 4667899999999 999999999999 999999876 2211110
Q ss_pred CCc----ccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEec
Q psy12802 262 PNK----TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS 337 (1637)
Q Consensus 262 ~~~----~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 337 (1637)
... ...+...|.+++|+|++++|++++.||.|++||+.+++.+.. +..
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------------~~~ 291 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN----------------------------FAK 291 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE----------------------------CCC
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh----------------------------hhc
Confidence 000 012345899999999999999999999999999976543221 111
Q ss_pred ccCceeeEEEEecCceEEEE-eCCCc
Q psy12802 338 QYGYEITDVAIMGNDRYLVA-RTPDT 362 (1637)
Q Consensus 338 ~~~~~i~~v~~s~~~~~lv~-~~~~~ 362 (1637)
++...|++++ |+++++++ +.|++
T Consensus 292 ~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 292 FNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccCCCceEec--CCCCeEEEEecCCc
Confidence 1134788888 88777766 67776
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-27 Score=292.48 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=179.2
Q ss_pred EECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeec-cCCCCCEEEEEEcC-CCC-EEEEeCCCcEEEEEcCC---Cce-
Q psy12802 53 AFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK-FIQQCPVTTMVWLA-DGP-IIYGQSDGKIKAAHVKA---NKT- 125 (1637)
Q Consensus 53 ~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~s~-~~~-l~~~~~d~~v~vwd~~~---~~~- 125 (1637)
.|+|+++.+++++ .|+... +.+... .+|.+.|++++|+| +++ +++|+.||+|++||+.+ +..
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g-----~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 102 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG-----KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY 102 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC-----CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC
T ss_pred hcCCccccccccc------cccccc-----eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc
Confidence 4788888887654 376443 344444 67899999999999 999 99999999999999987 442
Q ss_pred --eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc----------c--CCCCcEEEEe--cC
Q psy12802 126 --QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV----------Q--HPVPPYALSW--PA 189 (1637)
Q Consensus 126 --~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~----------~--~~~~v~~~~~--~~ 189 (1637)
....+|...|.+++|+|+++.|++|+.||+|++||+.....| ....... . +...+.++.+ ++
T Consensus 103 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 103 SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 233369999999999999999999999999999999622111 2222221 2 5667777774 44
Q ss_pred --CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcc
Q psy12802 190 --GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT 265 (1637)
Q Consensus 190 --~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~ 265 (1637)
..+++++.|+.|++|| .+++++..+..+ .|...|++++|+|+++.|++|+.|+ |++||+....... ...
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~ 253 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR----SWS 253 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE----EEB
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE----EEe
Confidence 3899999999999999 888998888852 2667999999999999999999999 9999998754321 112
Q ss_pred cCCCcceeEEEEcC----CCCEEEEEecCCcEEEEEccccc
Q psy12802 266 IPNLYTISALSWKR----DGSRIACGGLCGSVELFESVLKR 302 (1637)
Q Consensus 266 ~~~~~~i~~l~~sp----dg~~l~~~~~dg~v~iwd~~~~~ 302 (1637)
..+...|.+++|+| ++.+|++|+.||.|++||+.+++
T Consensus 254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 25667899996654 67799999999999999996543
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=3e-26 Score=282.37 Aligned_cols=267 Identities=13% Similarity=0.168 Sum_probs=224.9
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCc
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDK 82 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~ 82 (1637)
+...|+++.| ||+++++|+.||.|++||..+++ |...|++++| ++++|++|+.||+|++||+.++
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---- 203 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---- 203 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC----
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC----
Confidence 4556776655 89999999999999999998765 8889999998 7889999999999999999885
Q ss_pred eeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce----eeecccCCcEEEEEEecCCCeEEEEeCCCcEEE
Q psy12802 83 KVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT----QTLYASNSFVVALCLNVRGAGVLSGHADGSIVR 158 (1637)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~i 158 (1637)
+.+....+|...|.+++|++ +.+++|+.||.|++||+.++.. ..+.+|...|.+++| +++.+++|+.||+|++
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 45566678999999999973 2399999999999999998764 567789999999999 7889999999999999
Q ss_pred EEecCCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCE
Q psy12802 159 YYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQA 237 (1637)
Q Consensus 159 wd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 237 (1637)
||+.+. ..+..+.+|...|.++.|+++.+++|+.||.|++|| .+++++..+. .|...|.+++| ++..
T Consensus 281 wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 281 WNTSTC-----EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-----GHEELVRCIRF--DNKR 348 (435)
T ss_dssp EETTTC-----CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEC--CSSE
T ss_pred EECCcC-----cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEe-----CCcCcEEEEEe--cCCE
Confidence 999874 677888899999999999999999999999999999 7899998887 46668999998 7899
Q ss_pred EEEEecCc-EEEEEeCCCCCcccc----CCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccc
Q psy12802 238 VVVGSYDN-IKLFAWSPSKSVWEE----QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 238 l~~~~~d~-i~i~~~~~~~~~~~~----~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
+++|+.|+ |++||+......... .......|...|.+++| +++.|++|+.||+|++||+.+.
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 999998754421100 01223457789999999 7888999999999999999644
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=1e-25 Score=275.84 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=223.0
Q ss_pred EEEcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcE
Q psy12802 37 AWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKI 115 (1637)
Q Consensus 37 vwd~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v 115 (1637)
+.|.........++.|+||++ +.||+|. |++|+|||..++ .........+|...|++|+|+|+|+ +++|+.||+|
T Consensus 96 ~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg--~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v 171 (420)
T 4gga_A 96 ILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171 (420)
T ss_dssp EEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCC--CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE
Confidence 334333333455778999986 4777776 999999999885 2223334457888999999999999 9999999999
Q ss_pred EEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC--CeE
Q psy12802 116 KAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA--GYI 192 (1637)
Q Consensus 116 ~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~--~~l 192 (1637)
++||+.+++. ..+.+|...+.+++++ +..+++|+.|+.+++||..... ..+..+.+|...+..+.|+| ..+
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~----~~~~~~~~h~~~~~~~~~~~~g~~l 245 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE----HHVATLSGHSQEVCGLRWAPDGRHL 245 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS----CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc----eeeEEecccccceeeeeecCCCCee
Confidence 9999999998 8889999999988775 6799999999999999988653 45677889999999999988 489
Q ss_pred EEEecCCeEEEEe-CCCce----eEEeeccCCCCCCccEEEEEECCCCC-EEEEE--ecCc-EEEEEeCCCCCccccCCC
Q psy12802 193 LAAGSDRIVTIYE-SDGRV----HRIFDYTAPHYKEREFTVACSSPSGQ-AVVVG--SYDN-IKLFAWSPSKSVWEEQPN 263 (1637)
Q Consensus 193 ~~~~~d~~i~iwd-~~~~~----~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~--~~d~-i~i~~~~~~~~~~~~~~~ 263 (1637)
++++.|+.+++|+ .+++. +.... .+...|.+++|+|++. .++++ +.|+ |++||+.++...
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~-----~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~------ 314 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFT-----QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL------ 314 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEEC-----CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE------
T ss_pred eeeeccccceEEeeccccccceeeeeec-----ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc------
Confidence 9999999999999 54442 23333 4677899999999765 55543 4677 999998876542
Q ss_pred cccCCCcceeEEEEcCCCCEEEEEe--cCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCc
Q psy12802 264 KTIPNLYTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY 341 (1637)
Q Consensus 264 ~~~~~~~~i~~l~~spdg~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 341 (1637)
..+.....+.++.|+|+++.+++++ .||.|++||+.+++.+.. +. .+..
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~----------------------------l~-gH~~ 365 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE----------------------------LK-GHTS 365 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE----------------------------EC-CCSS
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE----------------------------Ec-CCCC
Confidence 3344556899999999999988765 789999999976543211 11 1233
Q ss_pred eeeEEEEecCceEEEE-eCCCcEEEeecccc
Q psy12802 342 EITDVAIMGNDRYLVA-RTPDTLLLGDLHRN 371 (1637)
Q Consensus 342 ~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~ 371 (1637)
.|++++|+|+|.++++ +.|++|+|||+...
T Consensus 366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 366 RVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7999999999887776 78999999998653
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=5.4e-26 Score=274.12 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=218.3
Q ss_pred eeecCCCCCceeEEEEcCC---CCEEEEEeCCCeEEEEEcCC-CC--------cccceEEEEECCCCCeEEEEECCCeEE
Q psy12802 4 VKYTDVSSNVLQDDVFNLD---IVRLRSEGNVAGIWAWRGQN-GR--------KSYVVKGLAFSPDSTKLAVAQSDNIIF 71 (1637)
Q Consensus 4 ~k~~~~~~~~i~~~~~spd---g~~la~~~~d~~i~vwd~~~-~~--------h~~~V~~~~~spd~~~la~~~~d~~i~ 71 (1637)
++....|...|++++|+|+ |.+|++++.|+.|++||+.+ +. |...|++++|+|++++|++++.||.|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3556778999999999999 69999999999999999987 33 788999999999999999999999999
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEE--cCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeE
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVW--LADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGV 147 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l 147 (1637)
+||+.++ ..+ ....|...|++++| +|++. +++++.||.|++||+++++. ..+..+ ..+.++.+.+ ..+
T Consensus 112 iwd~~~~----~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~ 183 (368)
T 3mmy_A 112 MWDLSSN----QAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIY--PMA 183 (368)
T ss_dssp EEETTTT----EEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEET--TEE
T ss_pred EEEcCCC----Cce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecC--Cee
Confidence 9999874 333 34579999999999 89999 99999999999999999988 555544 4566666664 588
Q ss_pred EEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEe--cCC----eEEEEecCCeEEEEe-CCC---ceeEEeecc
Q psy12802 148 LSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW--PAG----YILAAGSDRIVTIYE-SDG---RVHRIFDYT 217 (1637)
Q Consensus 148 ~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~--~~~----~l~~~~~d~~i~iwd-~~~---~~~~~~~~~ 217 (1637)
++++.++.+.+|++..... ........+...+.++.+ .+. .+++++.||.|++|| ..+ ..+..+..+
T Consensus 184 ~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPS---EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp EEEEGGGCEEEEECSSSCE---EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred EEEeCCCcEEEEEeccccc---hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 9999999999999987532 111222233444555554 332 499999999999999 444 445555532
Q ss_pred CC-------CCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEec
Q psy12802 218 AP-------HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL 289 (1637)
Q Consensus 218 ~~-------~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 289 (1637)
.. ..+...|++++|+|+|++|++++.|+ |++||+...... .....|...|.+++|+|+|++|++++.
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL-----KTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-----EECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE-----EEecCCCCCceEEEECCCCCeEEEEec
Confidence 11 01122699999999999999999999 999999875543 222356779999999999999999999
Q ss_pred CCcEEEEEc
Q psy12802 290 CGSVELFES 298 (1637)
Q Consensus 290 dg~v~iwd~ 298 (1637)
|+..+.|+.
T Consensus 336 d~~~~~~~~ 344 (368)
T 3mmy_A 336 YDWSKGHEF 344 (368)
T ss_dssp CCSTTCGGG
T ss_pred ccccccccc
Confidence 986555554
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=3.9e-26 Score=278.27 Aligned_cols=293 Identities=16% Similarity=0.149 Sum_probs=228.8
Q ss_pred cceEEEEECCCCCeEE-EEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcC-CCC-EEEEeCCCcEEEEEcCCC
Q psy12802 47 YVVKGLAFSPDSTKLA-VAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA-DGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
.....++++|+...++ +++.||.|+||++.........+....+|.+.|++++|+| ++. +++|+.||+|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 3445688999876554 5788999999999664222223344567999999999999 888 999999999999999987
Q ss_pred -------ce-eeecccCCcEEEEEEecCC-CeEEEEeCCCcEEEEEecCCCCccccccccc--ccCCCCcEEEEecCC--
Q psy12802 124 -------KT-QTLYASNSFVVALCLNVRG-AGVLSGHADGSIVRYYVTEDASNFDQQQGRV--VQHPVPPYALSWPAG-- 190 (1637)
Q Consensus 124 -------~~-~~~~~~~~~v~~l~~s~~g-~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~--~~~~~~v~~~~~~~~-- 190 (1637)
+. ..+.+|...|.+++|+|++ ..|++++.||+|++||+.+. ..+..+ ..|...|.+++|+|+
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-----AAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-----EEEEEECTTTCCSCEEEEEECTTSS
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-----CccEEEecCCCCCceEEEEECCCCC
Confidence 44 7788999999999999998 68999999999999999874 666777 789999999999984
Q ss_pred eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCc-cEEEEEECCCCCEEEEE---ecCc-EEEEEeCCCCCccccCCCc
Q psy12802 191 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-EFTVACSSPSGQAVVVG---SYDN-IKLFAWSPSKSVWEEQPNK 264 (1637)
Q Consensus 191 ~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~~---~~d~-i~i~~~~~~~~~~~~~~~~ 264 (1637)
.+++++.|+.|++|| .+++.+..+.. .|.. .+.+++|+|+|+++++| +.++ |++||+...... ....
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~ 262 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDR----PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP---LSLQ 262 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEEC----SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC---SEEE
T ss_pred EEEEEecCCcEEEEeCCCCceeeeecc----CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC---ceEE
Confidence 899999999999999 78888887731 2333 48899999999999999 6777 999998865431 1122
Q ss_pred ccCCCcceeEEEEcCCCCEEE-EEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCcee
Q psy12802 265 TIPNLYTISALSWKRDGSRIA-CGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEI 343 (1637)
Q Consensus 265 ~~~~~~~i~~l~~spdg~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i 343 (1637)
...+...+.++.|+|+++.|+ +|+.||.|++||+.+++... ..+. .......|
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~-------------------------~~l~-~~~~~~~v 316 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL-------------------------HYLS-MFSSKESQ 316 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCE-------------------------EEEE-EECCSSCC
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcce-------------------------Eeec-ccccCCcc
Confidence 334667899999999999986 45579999999997554100 0000 01123479
Q ss_pred eEEEEecCceEEEEeCCCcEEEeeccccceeeeec
Q psy12802 344 TDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLW 378 (1637)
Q Consensus 344 ~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~~~~~ 378 (1637)
.+++|+|++.++++ .++.+++|++.++.+..+.+
T Consensus 317 ~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~~~i~~ 350 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN-KCEIARFYKLHERKCEPIAM 350 (402)
T ss_dssp SEEEECCGGGSCGG-GTEEEEEEEEETTEEEEEEE
T ss_pred cceEEeccccccee-cceeEEEEEcCCCcEEEEEE
Confidence 99999999888765 56799999998876655443
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.6e-26 Score=274.73 Aligned_cols=282 Identities=13% Similarity=0.157 Sum_probs=218.8
Q ss_pred CCcccceEEEEECCC---CCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEE
Q psy12802 43 GRKSYVVKGLAFSPD---STKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAA 118 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd---~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vw 118 (1637)
..|...|++++|+|+ |++|++|+.||.|++||+.+. .........+|...|++++|+|+++ +++++.||.|++|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 458999999999999 699999999999999999873 1333345567999999999999999 9999999999999
Q ss_pred EcCCCceeeecccCCcEEEEEE--ecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEe
Q psy12802 119 HVKANKTQTLYASNSFVVALCL--NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAG 196 (1637)
Q Consensus 119 d~~~~~~~~~~~~~~~v~~l~~--s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 196 (1637)
|+.+++...+.+|...|.+++| +|+++.|++++.||.|++||+++. +.+..+..+ ..+.++.+.++.+++++
T Consensus 114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----NPMMVLQLP-ERCYCADVIYPMAVVAT 187 (368)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----SCSEEEECS-SCEEEEEEETTEEEEEE
T ss_pred EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----cEEEEEecC-CCceEEEecCCeeEEEe
Confidence 9999999778899999999999 899999999999999999999874 555555544 47888888888999999
Q ss_pred cCCeEEEEeC-CCc-eeEEeeccCCCCCCccEEEEEECCCCCE----EEEEecCc-EEEEEeCCCCCccccCCCcccCC-
Q psy12802 197 SDRIVTIYES-DGR-VHRIFDYTAPHYKEREFTVACSSPSGQA----VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN- 268 (1637)
Q Consensus 197 ~d~~i~iwd~-~~~-~~~~~~~~~~~~~~~~i~~~~~sp~g~~----l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~- 268 (1637)
.++.+.+|+. ... ....+.. .....+.++++.+++.. +++++.++ |++|+++....... ......|
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~ 261 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIES----PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD--NFTFKCHR 261 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECCC----SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH--SEEEECSE
T ss_pred CCCcEEEEEeccccchhhhccc----cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc--ceeeeeee
Confidence 9999999993 332 2222222 24445666666655544 99999999 99999987642100 0111112
Q ss_pred -----------CcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEec
Q psy12802 269 -----------LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS 337 (1637)
Q Consensus 269 -----------~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 337 (1637)
...|.+++|+|++++|++++.||.|++||+.+++.+.. ..
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------------~~ 312 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT-----------------------------SE 312 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE-----------------------------CC
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE-----------------------------ec
Confidence 22699999999999999999999999999975543221 11
Q ss_pred ccCceeeEEEEecCceEEEE-eCCCcEEEee
Q psy12802 338 QYGYEITDVAIMGNDRYLVA-RTPDTLLLGD 367 (1637)
Q Consensus 338 ~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d 367 (1637)
.+...|++++|+|+++++++ +.++....|+
T Consensus 313 ~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 22347999999999887777 5666544443
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=3.8e-26 Score=278.43 Aligned_cols=275 Identities=11% Similarity=0.104 Sum_probs=219.6
Q ss_pred eEEEEcCCCCEEE-EEeCCCeEEEEEcCCC-----------CcccceEEEEECC-CCCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 15 QDDVFNLDIVRLR-SEGNVAGIWAWRGQNG-----------RKSYVVKGLAFSP-DSTKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 15 ~~~~~spdg~~la-~~~~d~~i~vwd~~~~-----------~h~~~V~~~~~sp-d~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
+.++++|+...++ +++.+|.|++|++... .|...|++++|+| ++++|++|+.||+|++||+.++...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 4578899886555 4788999999998542 3888999999999 8999999999999999999875211
Q ss_pred c---eeEeeccCCCCCEEEEEEcCCC-C-EEEEeCCCcEEEEEcCCCce-eee--cccCCcEEEEEEecCCCeEEEEeCC
Q psy12802 82 K---KVICNKFIQQCPVTTMVWLADG-P-IIYGQSDGKIKAAHVKANKT-QTL--YASNSFVVALCLNVRGAGVLSGHAD 153 (1637)
Q Consensus 82 ~---~~~~~~~~~~~~v~~v~~s~~~-~-l~~~~~d~~v~vwd~~~~~~-~~~--~~~~~~v~~l~~s~~g~~l~s~~~d 153 (1637)
. ..+....+|...|++++|+|++ . +++++.|+.|++||+.+++. ..+ .+|...|.+++|+|+|+.|++++.|
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 197 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence 1 2344455799999999999998 5 88999999999999999988 677 7899999999999999999999999
Q ss_pred CcEEEEEecCCCCccccccccc-ccCCCC-cEEEEecCC--eEEEE---ecCCeEEEEe-CCCce-eEEeeccCCCCCCc
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRV-VQHPVP-PYALSWPAG--YILAA---GSDRIVTIYE-SDGRV-HRIFDYTAPHYKER 224 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~-~~~~~~-v~~~~~~~~--~l~~~---~~d~~i~iwd-~~~~~-~~~~~~~~~~~~~~ 224 (1637)
|.|++||+++. ..+..+ ..|.+. +.++.|+|+ .+++| +.|+.|++|| .++.. +..... .+..
T Consensus 198 ~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~ 268 (402)
T 2aq5_A 198 KRVRVIEPRKG-----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL----DTSS 268 (402)
T ss_dssp SEEEEEETTTT-----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC----CCCS
T ss_pred CcEEEEeCCCC-----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec----cCCC
Confidence 99999999873 566666 678776 899999984 55666 5899999999 44443 333332 2556
Q ss_pred cEEEEEECCCCCEEEE-EecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccc
Q psy12802 225 EFTVACSSPSGQAVVV-GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 302 (1637)
Q Consensus 225 ~i~~~~~sp~g~~l~~-~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~ 302 (1637)
.+.+++|+|+|+.+++ |+.|+ |++|++....... .......+...|.+++|+|++.++++ .++.+++|++.++.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~--~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL--HYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCE--EEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcce--EeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 7999999999999975 45688 9999998765311 11223345679999999999998764 57799999997543
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=272.85 Aligned_cols=243 Identities=18% Similarity=0.243 Sum_probs=205.0
Q ss_pred ecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------CcccceEEEEECCC--CCeEEEEECCCeEEEEE
Q psy12802 6 YTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG---------RKSYVVKGLAFSPD--STKLAVAQSDNIIFIYK 74 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~---------~h~~~V~~~~~spd--~~~la~~~~d~~i~iw~ 74 (1637)
....|...|++++|+|||++|++++.|+.|++||+..+ .|...|++++|+|+ +++|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 34568999999999999999999999999999998732 38899999999987 99999999999999999
Q ss_pred cCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEEcCCCce---eeecccCCcEEEEEEec------
Q psy12802 75 LGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAHVKANKT---QTLYASNSFVVALCLNV------ 142 (1637)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~v~~l~~s~------ 142 (1637)
+.++ ....+.....|...|.+++|+|+ +. +++++.|+.|++||+.++.. ..+.+|...|.+++|+|
T Consensus 86 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 86 EENG--RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EETT--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred cCCC--ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9874 12245566679999999999999 88 99999999999999998743 56778999999999999
Q ss_pred -------CCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-----eEEEEecCCeEEEEe-CCCc
Q psy12802 143 -------RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-----YILAAGSDRIVTIYE-SDGR 209 (1637)
Q Consensus 143 -------~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~d~~i~iwd-~~~~ 209 (1637)
++..|++|+.||.|++||++.....+ .....+.+|..+|.+++|+|+ .+++++.||.|++|| .++.
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 69999999999999999998643210 244567789999999999874 688999999999999 5543
Q ss_pred ---eeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCC
Q psy12802 210 ---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS 254 (1637)
Q Consensus 210 ---~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~ 254 (1637)
....+.. . .+...+++++|+|+|++|++++.|+ |++|+++..
T Consensus 243 ~~~~~~~~~~--~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 243 GPWKKTLLKE--E-KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCCEEEESSS--S-CCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred ccceeeeecc--c-cCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 2222221 1 4777899999999999999999999 999998753
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-25 Score=275.40 Aligned_cols=277 Identities=14% Similarity=0.142 Sum_probs=216.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----------------------------------------------
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR----------------------------------------------- 44 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~----------------------------------------------- 44 (1637)
.++++++|||||++|++++ ++.|++||+.+|+
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4689999999999766665 7799999987776
Q ss_pred -----------------cccceEEEEECCCCCeE-EEEECCCeEEEEEcC--CCCCCceeEeeccCCCCCEEEEEEcCCC
Q psy12802 45 -----------------KSYVVKGLAFSPDSTKL-AVAQSDNIIFIYKLG--DDWGDKKVICNKFIQQCPVTTMVWLADG 104 (1637)
Q Consensus 45 -----------------h~~~V~~~~~spd~~~l-a~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 104 (1637)
|...|++++|+|++++| ++++.||.|++||+. ++ ..........|...|++++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCC
Confidence 12269999999999996 889999999999998 43 111111222577899999999999
Q ss_pred C-EEEEeCCCcEEEEEcCCCce-e----eecccCCcEEEEEEecC---CCeEEEEeCCCcEEEEEecCCCCcccccccc-
Q psy12802 105 P-IIYGQSDGKIKAAHVKANKT-Q----TLYASNSFVVALCLNVR---GAGVLSGHADGSIVRYYVTEDASNFDQQQGR- 174 (1637)
Q Consensus 105 ~-l~~~~~d~~v~vwd~~~~~~-~----~~~~~~~~v~~l~~s~~---g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~- 174 (1637)
+ +++++.+|.|++|++.++.. . .+.+|...|.+++|+|+ +++|++|+.|++|++||+.+. ..+..
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~ 236 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-----FIVDKW 236 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-----TCEEEE
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-----ceeeee
Confidence 9 99999999999999988875 3 77899999999999999 999999999999999999863 45555
Q ss_pred cccCCCCcEEEEec-CCeEEEEecCCeEEEEe-CCCceeEEeeccCC--------------------CCCCccEEEEEEC
Q psy12802 175 VVQHPVPPYALSWP-AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAP--------------------HYKEREFTVACSS 232 (1637)
Q Consensus 175 ~~~~~~~v~~~~~~-~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~--------------------~~~~~~i~~~~~s 232 (1637)
+.+|...|.+++|+ +..+++++.|+.|++|| .+++++..+..+.. ......+.+++|+
T Consensus 237 ~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 237 LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred ecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 56899999999998 34899999999999999 88888888763210 0134579999999
Q ss_pred CCCCEEEEEe-cCc-EEEEEe--CCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEec------CCcEEEEEcc
Q psy12802 233 PSGQAVVVGS-YDN-IKLFAW--SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL------CGSVELFESV 299 (1637)
Q Consensus 233 p~g~~l~~~~-~d~-i~i~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~------dg~v~iwd~~ 299 (1637)
|+++++++++ .++ |++|++ ...... .....+.....|.+++|+|++.++++++. +..|.+|.+.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l---~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDL---ALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCE---EEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCce---eeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9999999998 677 999999 332111 11222222378999999996543444333 4558888764
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=7.1e-25 Score=258.09 Aligned_cols=288 Identities=15% Similarity=0.222 Sum_probs=218.9
Q ss_pred EEEcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcE
Q psy12802 37 AWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKI 115 (1637)
Q Consensus 37 vwd~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v 115 (1637)
|.|...-......++|+|||++ .||+|. |++|+|||+.++ .........+|...|++++|+|+++ +++|+.||+|
T Consensus 16 vldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg--~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 16 ILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp EEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCC--CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 4454322223346789999986 777665 999999999885 1222233456888999999999999 9999999999
Q ss_pred EEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC--CeE
Q psy12802 116 KAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA--GYI 192 (1637)
Q Consensus 116 ~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~--~~l 192 (1637)
++||+++++. ..+.+|...+.++. +++..+++++.++.+++|+..... ..+..+.+|...+..+.|++ ..+
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAE----HHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSS----CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCc----eeEEEEcCccCceEEEEEcCCCCEE
Confidence 9999999998 88889998887654 556799999999999999988653 45677889999999999987 489
Q ss_pred EEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEE---EEEecCc-EEEEEeCCCCCccccCCCcccC
Q psy12802 193 LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV---VVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 267 (1637)
Q Consensus 193 ~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l---~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~ 267 (1637)
++++.|+.|++|| .+++.......... .+...+.++.++|++..+ ++++.++ |++|+...... .....
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~------~~~~~ 238 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC------LSAVD 238 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE------EEEEE
T ss_pred EEEecCcceeEEECCCCcccccceeeec-ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc------ccccc
Confidence 9999999999999 55543222211111 466789999999987643 3455566 99999876554 23344
Q ss_pred CCcceeEEEEcCCCCEEEEEe--cCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeE
Q psy12802 268 NLYTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITD 345 (1637)
Q Consensus 268 ~~~~i~~l~~spdg~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~ 345 (1637)
+...+..+.|+|++..+++++ .||.|++||+.+++.+.. +. .+...|++
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~----------------------------l~-gH~~~V~~ 289 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE----------------------------LK-GHTSRVLS 289 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE----------------------------EC-CCSSCEEE
T ss_pred ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE----------------------------Ec-CCCCCEEE
Confidence 566899999999999887655 799999999976543221 11 12337999
Q ss_pred EEEecCceEEEE-eCCCcEEEeeccc
Q psy12802 346 VAIMGNDRYLVA-RTPDTLLLGDLHR 370 (1637)
Q Consensus 346 v~~s~~~~~lv~-~~~~~i~i~d~~~ 370 (1637)
++|+|+++++++ +.|++|+|||+..
T Consensus 290 l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 290 LTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999887776 7899999999854
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-25 Score=295.29 Aligned_cols=248 Identities=17% Similarity=0.231 Sum_probs=211.2
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEE
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAH 119 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd 119 (1637)
.+|.+.|++++|+|+|++|++|+.||+|+|||+..+ ....+....+|.++|++++|+|+ ++ +++|+.||+|++||
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 458999999999999999999999999999999742 23555666789999999999988 78 99999999999999
Q ss_pred cCCCc--e-eeecccCCcEEEEEEecC--CCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC-----
Q psy12802 120 VKANK--T-QTLYASNSFVVALCLNVR--GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA----- 189 (1637)
Q Consensus 120 ~~~~~--~-~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~----- 189 (1637)
+.+++ . ..+.+|...|.+++|+|+ |+.+++|+.||+|++||+..... .....+.+|...|.++.|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---CCCEEEECCSSCEEEEEECCCC---
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---cceeEeecCCCceEEEEecCccccc
Confidence 99986 3 777889999999999999 99999999999999999987543 34556778999999999987
Q ss_pred ----------CeEEEEecCCeEEEEe-CCC----ceeEEeeccCCCCCCccEEEEEECCC---CCEEEEEecCc-EEEEE
Q psy12802 190 ----------GYILAAGSDRIVTIYE-SDG----RVHRIFDYTAPHYKEREFTVACSSPS---GQAVVVGSYDN-IKLFA 250 (1637)
Q Consensus 190 ----------~~l~~~~~d~~i~iwd-~~~----~~~~~~~~~~~~~~~~~i~~~~~sp~---g~~l~~~~~d~-i~i~~ 250 (1637)
..+++|+.||.|++|| .++ .+...+. .|...|++++|+|+ |+.+++++.|+ |++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 3799999999999999 544 3344444 46779999999999 99999999999 99999
Q ss_pred eCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc
Q psy12802 251 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
+......+.........+...|++++|+|+|+++++|+.||.|++|++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99875443333344455778999999999999999999999999999864
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=1.1e-24 Score=268.49 Aligned_cols=282 Identities=19% Similarity=0.228 Sum_probs=221.1
Q ss_pred CcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 44 RKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 44 ~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
.|...|.++.| ++++|++|+.||.|++||+.++ +.+....+|...|.+++| +++ +++|+.||+|++||+.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC----CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC----eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 35677888776 8999999999999999999874 455566789999999999 677 99999999999999999
Q ss_pred Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeE
Q psy12802 123 NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIV 201 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 201 (1637)
++. ..+.+|...|.+++|++ ..+++|+.||+|++||+.+.... .....+.+|...|.++.|+++.+++|+.||.|
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 278 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI 278 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc--eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeE
Confidence 988 88889999999999974 59999999999999999875321 22256778999999999988999999999999
Q ss_pred EEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC
Q psy12802 202 TIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR 279 (1637)
Q Consensus 202 ~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 279 (1637)
++|| .+++.+..+. .|...+.++.| +++.+++|+.|+ |++||+.++... .....|...|.++.|
T Consensus 279 ~vwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 279 KVWNTSTCEFVRTLN-----GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-----RVLEGHEELVRCIRF-- 344 (435)
T ss_dssp EEEETTTCCEEEEEE-----CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE-----EEECCCSSCEEEEEC--
T ss_pred EEEECCcCcEEEEEc-----CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEE-----EEEeCCcCcEEEEEe--
Confidence 9999 8889998888 45668999988 578999999999 999999876543 223347778999998
Q ss_pred CCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-e
Q psy12802 280 DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-R 358 (1637)
Q Consensus 280 dg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~ 358 (1637)
++.+|++|+.||.|++||+.++...... ... ..+.....+...|+++.| ++.++++ +
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~~------------~~~~~~~~h~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAP--------AGT------------LCLRTLVEHSGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSC--------TTT------------TEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCcccc--------ccc------------hheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence 7899999999999999999654311000 000 011112223347888888 4444555 7
Q ss_pred CCCcEEEeeccccce
Q psy12802 359 TPDTLLLGDLHRNLL 373 (1637)
Q Consensus 359 ~~~~i~i~d~~~~~~ 373 (1637)
.|++|++||+.+...
T Consensus 403 ~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 403 HDDTILIWDFLNDPA 417 (435)
T ss_dssp SSSEEEEEC------
T ss_pred CCCEEEEEECCCCCC
Confidence 799999999976544
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1.9e-24 Score=258.50 Aligned_cols=287 Identities=16% Similarity=0.140 Sum_probs=203.0
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcC--CCC-EEEEeCCCcEEEEE
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA--DGP-IIYGQSDGKIKAAH 119 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~-l~~~~~d~~v~vwd 119 (1637)
.+|...|++++|+|++++|++|+.||.|++||+.++....+......+|..+|++++|+| +++ +++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 358999999999999999999999999999999875444455666678999999999999 588 99999999999999
Q ss_pred cCCCc---------e-eeecccCCcEEEEEEecC--CCeEEEEeCCCcEEEEEecCCCCcccccccccc-----------
Q psy12802 120 VKANK---------T-QTLYASNSFVVALCLNVR--GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV----------- 176 (1637)
Q Consensus 120 ~~~~~---------~-~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~----------- 176 (1637)
+.++. . ..+.+|...|.+++|+|+ ++.|++++.||.|++||+++.. .+..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS-----DLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT-----CTTCCEEEEEEESCSCC
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH-----Hhccccccccccccccc
Confidence 99873 3 677899999999999999 9999999999999999998742 222222
Q ss_pred --cCCCCcEEEEecC-----CeEEEEecCCeEEEEe-CCCce--eEEeeccCCCCCCccEEEEEECCCC----CEEEEEe
Q psy12802 177 --QHPVPPYALSWPA-----GYILAAGSDRIVTIYE-SDGRV--HRIFDYTAPHYKEREFTVACSSPSG----QAVVVGS 242 (1637)
Q Consensus 177 --~~~~~v~~~~~~~-----~~l~~~~~d~~i~iwd-~~~~~--~~~~~~~~~~~~~~~i~~~~~sp~g----~~l~~~~ 242 (1637)
.|...+.++.|+| +.+++++.++.+.+|+ ..++. +..+. .|...|++++|+|++ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-----GHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-----CCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-----CCCcceeEEEECCCCCCcceEEEEEc
Confidence 6888999999976 3899999999998887 55554 34444 467799999999998 8999999
Q ss_pred cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCC----cEEEEEccccceeeeCcEEEEEecCC
Q psy12802 243 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLKRTIWKGKFEMIYVSPS 317 (1637)
Q Consensus 243 ~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~ 317 (1637)
.|+ |++||+....... ........+....++++...+..+..++ .+.+|+....
T Consensus 238 ~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 296 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPL-----ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV---------------- 296 (351)
T ss_dssp TTSCEEEEEEEECC--------------------------------------------CCSEEE----------------
T ss_pred CCCeEEEEeCCCCcCcc-----ccCCcccceeccCCCcccccccccccccccceeeeecccccc----------------
Confidence 999 9999998654321 1111222333444444444444443322 2223322111
Q ss_pred eEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeeccccce
Q psy12802 318 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLL 373 (1637)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~ 373 (1637)
..+.....+...|+++.|+|+++++++ +.|+.|++||+.++..
T Consensus 297 -------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 297 -------------ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -------------EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred -------------cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 111112223347999999999877776 7899999999987543
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.1e-26 Score=297.19 Aligned_cols=248 Identities=18% Similarity=0.215 Sum_probs=203.7
Q ss_pred eecCCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------CcccceEEEEECCC--CCeEEEEECCCeEEEE
Q psy12802 5 KYTDVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG---------RKSYVVKGLAFSPD--STKLAVAQSDNIIFIY 73 (1637)
Q Consensus 5 k~~~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~---------~h~~~V~~~~~spd--~~~la~~~~d~~i~iw 73 (1637)
.....|...|++++|||||++|++|+.||+|++||+.++ .|...|++++|+|+ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 345679999999999999999999999999999998733 38899999999998 9999999999999999
Q ss_pred EcCCCCCCceeEeeccCCCCCEEEEEEcCC--CC-EEEEeCCCcEEEEEcCCCce---eeecccCCcEEEEEEec-----
Q psy12802 74 KLGDDWGDKKVICNKFIQQCPVTTMVWLAD--GP-IIYGQSDGKIKAAHVKANKT---QTLYASNSFVVALCLNV----- 142 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~-l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~v~~l~~s~----- 142 (1637)
|+.++ ....+....+|..+|++++|+|+ +. +++|+.||.|++||+.++.. ..+.+|...|.+++|+|
T Consensus 83 d~~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 83 KEENG--RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEETT--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred ECCCC--cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99874 22355566789999999999999 88 99999999999999998743 66789999999999999
Q ss_pred --------CCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-----eEEEEecCCeEEEEe-CCC
Q psy12802 143 --------RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-----YILAAGSDRIVTIYE-SDG 208 (1637)
Q Consensus 143 --------~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~d~~i~iwd-~~~ 208 (1637)
++..+++|+.||+|++||+++....+ .....+.+|..+|.+++|+|+ .+++++.||.|++|| .++
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 58999999999999999998743210 344567789999999999875 689999999999999 544
Q ss_pred ceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCC
Q psy12802 209 RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK 255 (1637)
Q Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~ 255 (1637)
.............+...|++++|+|+|+.+++++.|+ |++|+++...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 3111111111114777899999999999999999999 9999988543
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=266.34 Aligned_cols=260 Identities=11% Similarity=0.077 Sum_probs=204.7
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCc-----ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC-----CCce-eEee
Q psy12802 19 FNLDIVRLRSEGNVAGIWAWRGQNGRK-----SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW-----GDKK-VICN 87 (1637)
Q Consensus 19 ~spdg~~la~~~~d~~i~vwd~~~~~h-----~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~-----~~~~-~~~~ 87 (1637)
+.+|+.++++|+.||+|++||+.+++. ...|.++.|+|+ +++++.|++|++|+..... .... ....
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 457899999999999999999998873 367888889998 9999999999999876320 0112 2233
Q ss_pred ccCCCCCEEEEEEcC--CCC-EEEEeCCCcEEEEEcCCCce-eee-cccCCcEEEEEEecCCCeEEEEeCCCcEEEEEec
Q psy12802 88 KFIQQCPVTTMVWLA--DGP-IIYGQSDGKIKAAHVKANKT-QTL-YASNSFVVALCLNVRGAGVLSGHADGSIVRYYVT 162 (1637)
Q Consensus 88 ~~~~~~~v~~v~~s~--~~~-l~~~~~d~~v~vwd~~~~~~-~~~-~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~ 162 (1637)
..+|..+|.+++|+| +++ +++++.||+|++||+++++. ... ..|...+.+++|+|+|.+|++|+.||.|++||++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 346778999999999 999 99999999999999999988 333 3456689999999999999999999999999999
Q ss_pred CCCCcccccc-ccccc-CCCCcEEEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccE--EEEEECCCC
Q psy12802 163 EDASNFDQQQ-GRVVQ-HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREF--TVACSSPSG 235 (1637)
Q Consensus 163 ~~~~g~~~~~-~~~~~-~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i--~~~~~sp~g 235 (1637)
+. ... ..+.. |..+|.+++|+|+ .+++++ ++.|++|| ..++.+..+..... +...+ .+++|+|+|
T Consensus 201 ~~-----~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 201 SP-----DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDIDDSG 272 (343)
T ss_dssp CT-----TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTS
T ss_pred CC-----CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc--ccccccceEEEECCCC
Confidence 74 444 56777 9999999999984 677777 66999999 66666554442111 22223 469999999
Q ss_pred CEEEEEec-Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC---CCCEEEEEecCCcEEEEEc
Q psy12802 236 QAVVVGSY-DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR---DGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 236 ~~l~~~~~-d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~l~~~~~dg~v~iwd~ 298 (1637)
++|++++. ++ +++|++......|.. .++..+.|+| ++..+++++.||.+.++-.
T Consensus 273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CEEEEecCCCCcEEEEEEcccccceEe---------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99999988 77 999999877766643 4678889998 8899999999999988754
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.6e-24 Score=257.64 Aligned_cols=277 Identities=13% Similarity=0.077 Sum_probs=208.6
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----cccceEEEEECCCCCeEE-EEECCCeEEEEEcCCCCCC
Q psy12802 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-----KSYVVKGLAFSPDSTKLA-VAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 8 ~~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-----h~~~V~~~~~spd~~~la-~~~~d~~i~iw~~~~~~~~ 81 (1637)
..|...|++++|||||++|++|+.+ .+++|+..++. +...+..++|+++++.++ +++.|++|++||+.++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--- 91 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--- 91 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT---
T ss_pred ccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC---
Confidence 4578999999999999999999866 57899988655 234688899999999885 5777899999999875
Q ss_pred ceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCC-ce-eeecccCCcEEEEEEecCCCeEEE--EeCCCcEE
Q psy12802 82 KKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKAN-KT-QTLYASNSFVVALCLNVRGAGVLS--GHADGSIV 157 (1637)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~-~~-~~~~~~~~~v~~l~~s~~g~~l~s--~~~dg~i~ 157 (1637)
+.+... .+...|.++.|+++.. ++ ..++.|++||+.++ +. ..+.. +...+++++ ..+++ |+.||.|+
T Consensus 92 -~~~~~~-~~~~~v~~v~~~~~~~-~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 92 -QDVSRI-KVDAPVKDLFLSREFI-VV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIH 162 (355)
T ss_dssp -EEEEEE-ECSSCEEEEEECSSEE-EE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEE
T ss_pred -cEEEEE-ECCCceEEEEEcCCEE-EE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEE
Confidence 333333 3677999999997653 33 34789999999988 55 44443 455667777 56666 57899999
Q ss_pred EEEecCCCCc--c--------cc-cccccccCCCCcEEEEecCC--eEEEEecCCe-EEEEe-CCCceeEEeeccCCCCC
Q psy12802 158 RYYVTEDASN--F--------DQ-QQGRVVQHPVPPYALSWPAG--YILAAGSDRI-VTIYE-SDGRVHRIFDYTAPHYK 222 (1637)
Q Consensus 158 iwd~~~~~~g--~--------~~-~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~-i~iwd-~~~~~~~~~~~~~~~~~ 222 (1637)
+||+.+.... . -. ++..+.+|..+|.+++|+|+ .+++|+.|++ |++|| .+++++.++... .|
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g---~h 239 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG---LD 239 (355)
T ss_dssp EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---TC
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---CC
Confidence 9999863200 0 00 16778899999999999984 8999999998 99999 889999888721 26
Q ss_pred CccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccC--C---C-------------cccCCCcceeEEEEcCCCCE
Q psy12802 223 EREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ--P---N-------------KTIPNLYTISALSWKRDGSR 283 (1637)
Q Consensus 223 ~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~--~---~-------------~~~~~~~~i~~l~~spdg~~ 283 (1637)
...|.+++|+|+|++|++++.|+ |++|++.......... . . ...........++|+|||+.
T Consensus 240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~ 319 (355)
T 3vu4_A 240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL 319 (355)
T ss_dssp CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE
Confidence 67899999999999999999999 9999997643210000 0 0 00001123477999999999
Q ss_pred EEEEecCCcEEEEEccc
Q psy12802 284 IACGGLCGSVELFESVL 300 (1637)
Q Consensus 284 l~~~~~dg~v~iwd~~~ 300 (1637)
|++++.||.+++|++..
T Consensus 320 l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 320 VVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEETTTTEEEEEEEEE
T ss_pred EEEEeCCCeEEEEEEEc
Confidence 99999999999999854
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=3.5e-24 Score=262.88 Aligned_cols=250 Identities=12% Similarity=0.130 Sum_probs=202.4
Q ss_pred cccceEEEEECCC-CCeEEEEECCCeEEEEEcCCCC------CCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcE
Q psy12802 45 KSYVVKGLAFSPD-STKLAVAQSDNIIFIYKLGDDW------GDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKI 115 (1637)
Q Consensus 45 h~~~V~~~~~spd-~~~la~~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v 115 (1637)
|.+.|++++|+|+ +.+|++++.||.|++|++.... +....+....+|...|++++|+|++. +++|+.||.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 7889999999998 7899999999999999997520 11233444557999999999999987 8889999999
Q ss_pred EEEEcCCCce--------eeecccCCcEEEEEEec-CCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEE
Q psy12802 116 KAAHVKANKT--------QTLYASNSFVVALCLNV-RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALS 186 (1637)
Q Consensus 116 ~vwd~~~~~~--------~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~ 186 (1637)
++||+.++.. ..+.+|...|.+++|+| ++..|++++.||.|++||++..... .....+..|...|.+++
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--SCSEEEECCSSCEEEEE
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--cceeEeecCCCCeEEEE
Confidence 9999987431 45668999999999999 7788999999999999999975322 45667778999999999
Q ss_pred ecCC---eEEEEecCCeEEEEe-CC-CceeEEeeccCCCCCCccEEEEEECCCCC-EEEEEecCc-EEEEEeCCCCCccc
Q psy12802 187 WPAG---YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPSKSVWE 259 (1637)
Q Consensus 187 ~~~~---~l~~~~~d~~i~iwd-~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~-i~i~~~~~~~~~~~ 259 (1637)
|+|+ .+++|+.||.|++|| .+ +.++..+. .|...|.+++|+|+++ ++++++.|+ |++|++........
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-----~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-----cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 9983 588999999999999 44 56777777 4666999999999995 689999999 99999986332100
Q ss_pred ---------cCCCcccCCCcceeEEEEcCCCC-EEEEEecCCcEEEEEcccc
Q psy12802 260 ---------EQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 260 ---------~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~v~iwd~~~~ 301 (1637)
........|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 00112234667899999999999 8999999999999998643
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.6e-24 Score=261.48 Aligned_cols=244 Identities=11% Similarity=0.078 Sum_probs=193.2
Q ss_pred ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeec-------------------------------------
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK------------------------------------- 88 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~------------------------------------- 88 (1637)
..++++++|+|||++|+++ .++.|++||+.++... +.+...
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW-EFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE-EEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc-eeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 3578999999999966655 5889999999875300 011110
Q ss_pred -----------------cCCCCCEEEEEEcCCCC-E-EEEeCCCcEEEEEcC--CCce-eeec--ccCCcEEEEEEecCC
Q psy12802 89 -----------------FIQQCPVTTMVWLADGP-I-IYGQSDGKIKAAHVK--ANKT-QTLY--ASNSFVVALCLNVRG 144 (1637)
Q Consensus 89 -----------------~~~~~~v~~v~~s~~~~-l-~~~~~d~~v~vwd~~--~~~~-~~~~--~~~~~v~~l~~s~~g 144 (1637)
.+|.+.|++++|+|+++ + ++++.||.|++||+. +++. ..+. .|...|.+++|+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 13445799999999999 6 788899999999999 7776 5554 667899999999999
Q ss_pred CeEEEEeCCCcEEEEEecCCCCcccc-cccccccCCCCcEEEEecCC-----eEEEEecCCeEEEEe-CCCceeEEeecc
Q psy12802 145 AGVLSGHADGSIVRYYVTEDASNFDQ-QQGRVVQHPVPPYALSWPAG-----YILAAGSDRIVTIYE-SDGRVHRIFDYT 217 (1637)
Q Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~g~~~-~~~~~~~~~~~v~~~~~~~~-----~l~~~~~d~~i~iwd-~~~~~~~~~~~~ 217 (1637)
+.|++|+.+|.|++|++.+.... . ....+.+|...|.+++|+|+ .+++++.|+.|++|| .+++.+..+..
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~- 238 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF- 238 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC-
T ss_pred CEEEEEeCCCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec-
Confidence 99999999999999999875321 2 34477899999999999886 899999999999999 77887776432
Q ss_pred CCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCc--------------------ccCCCcceeEEE
Q psy12802 218 APHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNK--------------------TIPNLYTISALS 276 (1637)
Q Consensus 218 ~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~l~ 276 (1637)
.|...|.+++|+ +|++|++++.|+ |++||+..+.......... .......|.++.
T Consensus 239 ---~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 239 ---GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp ---CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred ---CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 467799999999 999999999999 9999998766432111000 002235789999
Q ss_pred EcCCCCEEEEEe-cCCcEEEEEc
Q psy12802 277 WKRDGSRIACGG-LCGSVELFES 298 (1637)
Q Consensus 277 ~spdg~~l~~~~-~dg~v~iwd~ 298 (1637)
|+|++++|++++ .++.|++|++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999998 8999999998
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=2.6e-24 Score=263.92 Aligned_cols=237 Identities=14% Similarity=0.184 Sum_probs=199.4
Q ss_pred CCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEEcCC----------CC-------cccceEEEEECCCCC-eEEEEECCC
Q psy12802 8 DVSSNVLQDDVFNLD-IVRLRSEGNVAGIWAWRGQN----------GR-------KSYVVKGLAFSPDST-KLAVAQSDN 68 (1637)
Q Consensus 8 ~~~~~~i~~~~~spd-g~~la~~~~d~~i~vwd~~~----------~~-------h~~~V~~~~~spd~~-~la~~~~d~ 68 (1637)
-.|...|++++|+|+ +.+|++++.+|.|++|++.+ .. |...|++++|+|++. +|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 347788999999997 78999999999999999975 22 788999999999998 999999999
Q ss_pred eEEEEEcCCCCCCcee---EeeccCCCCCEEEEEEcCC-CC-EEEEeCCCcEEEEEcCCC---ce-eeecccCCcEEEEE
Q psy12802 69 IIFIYKLGDDWGDKKV---ICNKFIQQCPVTTMVWLAD-GP-IIYGQSDGKIKAAHVKAN---KT-QTLYASNSFVVALC 139 (1637)
Q Consensus 69 ~i~iw~~~~~~~~~~~---~~~~~~~~~~v~~v~~s~~-~~-l~~~~~d~~v~vwd~~~~---~~-~~~~~~~~~v~~l~ 139 (1637)
.|++|++..+...... .....+|...|.+++|+|+ +. +++++.||.|++||++++ +. ..+..|...|.+++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 9999999874221121 2334479999999999995 45 889999999999999987 33 66779999999999
Q ss_pred EecCCC-eEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CC-C-----
Q psy12802 140 LNVRGA-GVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SD-G----- 208 (1637)
Q Consensus 140 ~s~~g~-~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~-~----- 208 (1637)
|+|++. .+++|+.||+|++||++... .++..+..|...|.++.|+|+ .+++++.|+.|++|| .. +
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTT----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 999998 58899999999999998742 567788899999999999983 588999999999999 33 1
Q ss_pred --------ceeEEeeccCCCCCCccEEEEEECCCCC-EEEEEecCc-EEEEEeCC
Q psy12802 209 --------RVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 209 --------~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~-i~i~~~~~ 253 (1637)
..+..+. .|...|++++|+|++. ++++++.|+ |++|+++.
T Consensus 361 ~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 361 EDAEDGPPELLFIHG-----GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHCCTTEEEECC-----CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cccccCCcceEEEcC-----CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 4444444 4677899999999999 899999999 99999864
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.3e-23 Score=249.76 Aligned_cols=294 Identities=11% Similarity=0.071 Sum_probs=204.2
Q ss_pred CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-E-EEEeCCCcEEEEEc
Q psy12802 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-I-IYGQSDGKIKAAHV 120 (1637)
Q Consensus 43 ~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l-~~~~~d~~v~vwd~ 120 (1637)
..|...|++++|||||++|++|+.++ ++||++.+. ...... +...+..+.|+++++ + ++++.|++|++||+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 34789999999999999999988765 789998763 222221 223578889999888 5 56788899999999
Q ss_pred CCCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEE--EecC
Q psy12802 121 KANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILA--AGSD 198 (1637)
Q Consensus 121 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~--~~~d 198 (1637)
.+++......+...|.++.|++++ ++++ .|+.|++||+.+.. +.+..+.. +...++++++.+++ |+.|
T Consensus 89 ~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~----~~~~~~~~---~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW----KRITDDIR---FGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC----CBSSCCEE---EEEEEEEETTEEEEEESSCT
T ss_pred CCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc----eeeEEecc---CCceEEEEccEEEEeCCCcC
Confidence 999884444577899999999874 4433 47899999998742 23344443 44455667776666 5789
Q ss_pred CeEEEEe-CCCc---------------e-eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccc
Q psy12802 199 RIVTIYE-SDGR---------------V-HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWE 259 (1637)
Q Consensus 199 ~~i~iwd-~~~~---------------~-~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~ 259 (1637)
|.|++|| .+++ + +..+. .|...|++++|+|+|++|++|+.|+ |++||+.++...
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-- 231 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-----AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-- 231 (355)
T ss_dssp TCEEEEECCC------------------CCEEEC-----CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE--
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEE-----ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--
Confidence 9999999 5443 1 55555 4777999999999999999999998 999999876543
Q ss_pred cCCCccc--C-CCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEe
Q psy12802 260 EQPNKTI--P-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILK 336 (1637)
Q Consensus 260 ~~~~~~~--~-~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 336 (1637)
..+ . |...|.+++|+|||++|++++.||+|++||+..........+ ...+.-..+..........+.
T Consensus 232 ----~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 232 ----REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHAL------KGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp ----EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEET------TTTEECCCCCCSSCSEEEECC
T ss_pred ----EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccc------cceeeccccccccceeEEEec
Confidence 222 2 778999999999999999999999999999965432111000 000000000000000111111
Q ss_pred cccCceeeEEEEecCceEEEE-eCCCcEEEeeccc
Q psy12802 337 SQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHR 370 (1637)
Q Consensus 337 ~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~ 370 (1637)
.........++|+|++.++++ +.++.+.+|++..
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 122224567999999876666 7899999998754
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=6.4e-23 Score=249.26 Aligned_cols=258 Identities=13% Similarity=0.161 Sum_probs=202.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeE-EEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEE
Q psy12802 24 VRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKL-AVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVT 96 (1637)
Q Consensus 24 ~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~ 96 (1637)
.++++++.++.|++||+.+++ +...+.+++|+|+|++| ++++.|+.|++||+.++ +.+... .+...+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~-~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATV-PAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEE-ECSSSEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC----eEEEEE-ECCCCcc
Confidence 467888899999999998876 34568999999999987 56668999999999874 333333 2344999
Q ss_pred EEEEcCCCC-EE-EEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeE-EEEeCCCcEEEEEecCCCCccccccc
Q psy12802 97 TMVWLADGP-II-YGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGV-LSGHADGSIVRYYVTEDASNFDQQQG 173 (1637)
Q Consensus 97 ~v~~s~~~~-l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~~~~~g~~~~~~ 173 (1637)
+++|+|+++ ++ +++.++.|++||+.+++......+...+.+++|+|+|+.+ ++++.|+.|++||+.+. +...
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~ 152 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-----AVIN 152 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----EEEE
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----cEEE
Confidence 999999999 65 4556799999999999884444456678999999999987 67888999999999863 4555
Q ss_pred ccccCCCCcEEEEecCC--eE-EEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEe---cCc-
Q psy12802 174 RVVQHPVPPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS---YDN- 245 (1637)
Q Consensus 174 ~~~~~~~~v~~~~~~~~--~l-~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~d~- 245 (1637)
.+..+ ..+.++.|+|+ .+ ++++.++.|++|| .+++.+..+. +...+.+++|+|+|+.+++++ .++
T Consensus 153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK------VEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe------cCCCccceEECCCCCEEEEEecCcCCCc
Confidence 55444 56799999984 45 5677899999999 6777776665 334689999999999999888 456
Q ss_pred EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEE-EEEecCCcEEEEEcccccee
Q psy12802 246 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESVLKRTI 304 (1637)
Q Consensus 246 i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l-~~~~~dg~v~iwd~~~~~~~ 304 (1637)
|++||....... ..+.....+.+++|+|+|+++ ++++.|+.|++||+.+++..
T Consensus 226 v~~~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 226 VSMIDTGTNKIT------ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EEEEETTTTEEE------EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEECCCCeEE------EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 999998765432 222223467899999999987 67788999999999877654
No 123
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.92 E-value=5.4e-25 Score=252.71 Aligned_cols=409 Identities=14% Similarity=0.148 Sum_probs=224.0
Q ss_pred HHHHHHHH-HccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHH
Q psy12802 988 NKALDTSI-KAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIA 1066 (1637)
Q Consensus 988 ~~ai~~~~-~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~ 1066 (1637)
..|++..+ +.|++++|.++++++..|+ +|..||.++.+.|++++|+++|.++.++
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~~----vWs~La~A~l~~g~~~eAIdsfika~D~-------------------- 61 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEPA----VWSQLAKAQLQKGMVKEAIDSYIKADDP-------------------- 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCChH----HHHHHHHHHHHcCCHHHHHHHHHcCCCH--------------------
Confidence 44555544 5667888888888885554 8999999999999999999999876432
Q ss_pred HhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCc--hHHH-----HHHHhcCCHHHHHHHHHhhCCCchHHHHHH
Q psy12802 1067 EQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEP--DLAI-----SMFKNQRQYENMIKLVRNYHPDLLDTTLLH 1139 (1637)
Q Consensus 1067 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~--~~ai-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 1139 (1637)
..|..++..++..|+|++|+++|..+.+. +.++ .+|.+.|+++++.+++.. | . ..+|..
T Consensus 62 ----------~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--p-n-~~a~~~ 127 (449)
T 1b89_A 62 ----------SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING--P-N-NAHIQQ 127 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTTC--C---------
T ss_pred ----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC--C-c-HHHHHH
Confidence 24445555666667777777755554321 1133 368888888887777753 2 2 248999
Q ss_pred HHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHH----h
Q psy12802 1140 LAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNR----L 1215 (1637)
Q Consensus 1140 la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~ 1215 (1637)
+|..|...|+|++|..+|.++..|..++.+|.+.|++++|++.+++.+++.+|+.+..+|...|+++.|.....+ +
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~a 207 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA 207 (449)
T ss_dssp ---------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999765554 4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHhcC--CCCcHHHHHHHHHHHH---------------hCCChHHHHHHHHHcCChHH
Q psy12802 1216 SLLESCISNACDTYQFDFAFELAKIGM--KSKLEEVHYKYALVLE---------------DNGQFNEAETQFIKANKPKE 1278 (1637)
Q Consensus 1216 ~~~~~~i~~~~~~~~~~~a~~l~~~~~--~~~~~~~~~~~a~~~~---------------~~g~~~~A~~~~~~a~~~~~ 1278 (1637)
.....++.+|.+.|.|++|+.+++.+. .+.-...+..+|..|. +.-+.++.++.+.++..|.+
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 456788899999999999999999775 3444555555555444 44556666677788899999
Q ss_pred HHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhC
Q psy12802 1279 AISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYV 1358 (1637)
Q Consensus 1279 ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~ 1358 (1637)
++.+|.+.++|+.|..++.+|.++ .++++.|.+.+.....+.-+.+|+.+| -+..
T Consensus 288 ~~~ly~~~~e~d~A~~tm~~h~~~------------a~~~~~f~~~~~kv~n~elyYkai~fy-------------l~~~ 342 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITMMNHPTD------------AWKEGQFKDIITKVANVELYYRAIQFY-------------LEFK 342 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSTTT------------TCCHHHHHHHHHHCSSTHHHHHHHHHH-------------HHHC
T ss_pred HHHHHHhhchHHHHHHHHHhCChh------------hhhhHHHHHHHhchhHHHHHHHHHHHH-------------HhcC
Confidence 999999999999999999999888 677788888887666666667888888 4556
Q ss_pred CCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch--hHHHHHHHHHHHHHHhccCccchh
Q psy12802 1359 PSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV--NLMVKILNEVTQLTLKYLNHDQSY 1436 (1637)
Q Consensus 1359 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~ 1436 (1637)
|..+.++ +..+ ...=|+.+++..+.+....+. +++..+.......
T Consensus 343 p~~l~~l------------------l~~l----~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~----------- 389 (449)
T 1b89_A 343 PLLLNDL------------------LMVL----SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKS----------- 389 (449)
T ss_dssp GGGHHHH------------------HHHH----GGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHH-----------
T ss_pred HHHHHHH------------------HHHH----HhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHH-----------
Confidence 6666554 3333 234489999999999987766 5555444322222
Q ss_pred hhhhhhhhhhhhccCHH---HHHHHHhcccchHHHHHHHHhccchHHHHHHHHhhCcchHHHHHHHHHHHHHhcCCC
Q psy12802 1437 KILPSLVPKLMEFKQYD---LAVRVYLNIDMVKEAVDIFIYTQNWNKARKLCAELKPEYLSYVENQYKEWLKKNGDA 1510 (1637)
Q Consensus 1437 ~~~~~~~~~l~~~~~~~---~A~~~y~~~~~~~~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 1510 (1637)
|-..+-..|.+-.+|+ ..++.|.+.++ +.+|++++.+...++++..+..+++.+++
T Consensus 390 -vnealn~l~ieeed~~~lr~si~~~~nfd~-----------------~~l~~~le~h~l~~~r~iaa~~~~~~~~~ 448 (449)
T 1b89_A 390 -VNESLNNLFITEEDYQALRTSIDAYDNFDN-----------------ISLAQRLEKHELIEFRRIAAYLFKGNNRW 448 (449)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHCCCSCH-----------------HHHHHHHTTCSSHHHHHHHHHHHC-----
T ss_pred -HHHHHHHHHHhhhhHHHHHHHHHHhcCcCH-----------------HHHHHHHhcCchHHHHHHHHHHHHhccCC
Confidence 2233344444444554 56777777666 67888888888888887766666665543
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=1.5e-23 Score=258.78 Aligned_cols=266 Identities=9% Similarity=0.029 Sum_probs=214.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW 79 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~ 79 (1637)
..+.+++|+|++.++++++.++.|++||..+++ |...|.+++|+|+++.+++++.|+.|++||+.++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~- 201 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL- 201 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-
Confidence 345689999988888888888899999998765 4558999999999999999999999999999874
Q ss_pred CCceeEeeccCCCCCEEEEEEcCCCC-EE-EEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEe------
Q psy12802 80 GDKKVICNKFIQQCPVTTMVWLADGP-II-YGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGH------ 151 (1637)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~s~~~~-l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~------ 151 (1637)
+.+.....|...+.+++|+|+++ ++ +++.++.|++||+.+++......+...+.+++|+|+|+.+++++
T Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 202 ---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp ---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred ---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 34444457888999999999999 64 55589999999999998844444456699999999999999988
Q ss_pred --CCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCcc
Q psy12802 152 --ADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKERE 225 (1637)
Q Consensus 152 --~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~ 225 (1637)
.||.|++||+.+. +... ...|...+.+++|+|+ .+++++.++.|.+|| .+++.+..+. +...
T Consensus 279 ~~~dg~i~~~d~~~~-----~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~------~~~~ 346 (433)
T 3bws_A 279 ESGGGRLGIYSMDKE-----KLID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP------VFDK 346 (433)
T ss_dssp CSCCEEEEEEETTTT-----EEEE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE------CSSS
T ss_pred ccCCCeEEEEECCCC-----cEEe-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec------CCCC
Confidence 4889999999863 3333 3356668999999984 445668899999999 6677777765 3446
Q ss_pred EEEEEECCCCCEEEEEec---------------Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEec
Q psy12802 226 FTVACSSPSGQAVVVGSY---------------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL 289 (1637)
Q Consensus 226 i~~~~~sp~g~~l~~~~~---------------d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 289 (1637)
+.+++|+|+|+.+++++. |+ |++||..+.... ..+.....+.+++|+|||++|++++.
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK------EFWEAGNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE------EEEECSSSEEEEEECTTSCEEEEEET
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE------EEecCCCCCceEEEcCCCCEEEEEEC
Confidence 899999999999988876 45 999998765432 22233457899999999999988775
Q ss_pred -CCcEEEEEcc
Q psy12802 290 -CGSVELFESV 299 (1637)
Q Consensus 290 -dg~v~iwd~~ 299 (1637)
||.|++|++.
T Consensus 421 ~d~~i~v~~~~ 431 (433)
T 3bws_A 421 LDHQIRVYRRD 431 (433)
T ss_dssp TTTEEEEEEET
T ss_pred CCCeEEEEEec
Confidence 9999999984
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=5.1e-23 Score=254.06 Aligned_cols=307 Identities=11% Similarity=0.060 Sum_probs=231.3
Q ss_pred CceeEEE---EcCCCCEEEEEeC--------------CC--eEEEEEcCCCC--------cccceEEEEECCCCCeEEEE
Q psy12802 12 NVLQDDV---FNLDIVRLRSEGN--------------VA--GIWAWRGQNGR--------KSYVVKGLAFSPDSTKLAVA 64 (1637)
Q Consensus 12 ~~i~~~~---~spdg~~la~~~~--------------d~--~i~vwd~~~~~--------h~~~V~~~~~spd~~~la~~ 64 (1637)
..+..++ |+|++..+...+. ++ .|+.||..++. ....+.+++|+|++..++++
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 140 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPL 140 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEB
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEe
Confidence 4566777 8998877765322 22 45555554442 24457799999977777788
Q ss_pred ECCCeEEEEEcCCCCCCceeEe-----eccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEE
Q psy12802 65 QSDNIIFIYKLGDDWGDKKVIC-----NKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVA 137 (1637)
Q Consensus 65 ~~d~~i~iw~~~~~~~~~~~~~-----~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~ 137 (1637)
+.++.|++||+.++ +... ...+|...|.+++|+|++. +++++.|+.|++||+++++. ..+..|...+.+
T Consensus 141 ~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 141 LEDEGMDVLDINSG----QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI 216 (433)
T ss_dssp TTSSSEEEEETTTC----CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred CCCCeEEEEECCCC----eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence 88899999999875 2222 2346888999999999999 89999999999999999887 777789999999
Q ss_pred EEEecCCCeEEE-EeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEe--------cCCeEEEEe-
Q psy12802 138 LCLNVRGAGVLS-GHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAG--------SDRIVTIYE- 205 (1637)
Q Consensus 138 l~~s~~g~~l~s-~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~--------~d~~i~iwd- 205 (1637)
++|+|+|+.+++ ++.|+.|++||+.+. .....+.. ...+.+++|+|+ .+++++ .|+.|++||
T Consensus 217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~-----~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 217 LLYDPIRDLVYCSNWISEDISVIDRKTK-----LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTT-----EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred EEEcCCCCEEEEEecCCCcEEEEECCCC-----cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 999999998854 447999999999863 44444444 455899999984 677776 488999999
Q ss_pred CCCceeEEeeccCCCCCCccEEEEEECCCCCEE-EEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCE
Q psy12802 206 SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR 283 (1637)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 283 (1637)
.+++.+..+. +...+.+++|+|+|+.+ ++++.++ +++|++...... ..+.+...+.+++|+|+|++
T Consensus 291 ~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 291 DKEKLIDTIG------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ------KSIPVFDKPNTIALSPDGKY 358 (433)
T ss_dssp TTTEEEEEEE------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE------EEEECSSSEEEEEECTTSSE
T ss_pred CCCcEEeecc------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE------EEecCCCCCCeEEEcCCCCE
Confidence 6777766654 33468899999999865 5557777 999998865432 23345567899999999999
Q ss_pred EEEEec---------------CCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEE
Q psy12802 284 IACGGL---------------CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAI 348 (1637)
Q Consensus 284 l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~ 348 (1637)
+++++. ||.|++||..+++.... +. .+..+..++|
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~----------------------------~~--~~~~~~~~~~ 408 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF----------------------------WE--AGNQPTGLDV 408 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE----------------------------EE--CSSSEEEEEE
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEE----------------------------ec--CCCCCceEEE
Confidence 888876 57999999976543211 00 1235889999
Q ss_pred ecCceEEEE-e-CCCcEEEeeccc
Q psy12802 349 MGNDRYLVA-R-TPDTLLLGDLHR 370 (1637)
Q Consensus 349 s~~~~~lv~-~-~~~~i~i~d~~~ 370 (1637)
+|+++++++ + .++.|.+|++++
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCCCCEEEEEECCCCeEEEEEecC
Confidence 999887765 4 489999999764
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=4e-24 Score=258.32 Aligned_cols=227 Identities=12% Similarity=0.134 Sum_probs=168.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC------------CcccceEEEEECC--------CCCeEEEEECCCeEE
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNG------------RKSYVVKGLAFSP--------DSTKLAVAQSDNIIF 71 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~------------~h~~~V~~~~~sp--------d~~~la~~~~d~~i~ 71 (1637)
.......++|++.++++++.|++|++||..++ +|.+.|++++|+| |+++||+|+.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 34445566778889999999999999998754 3899999999998 899999999999999
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce-ee---------------------
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT-QT--------------------- 127 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~-~~--------------------- 127 (1637)
|||+.++ ..+.....|..+|.+++|+|++. +++++.|++|++||+.+++. ..
T Consensus 170 ~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 170 IWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred EEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999774 44455567899999999999885 88999999999999988754 11
Q ss_pred ----ecccCCcEEEEEEe-cCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEE------------------
Q psy12802 128 ----LYASNSFVVALCLN-VRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYA------------------ 184 (1637)
Q Consensus 128 ----~~~~~~~v~~l~~s-~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~------------------ 184 (1637)
..+|...+.++.|+ |||+.+++++.|+++++||+... .....+..|...+..
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-----NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-----CCCceEeeecCccccEEEccccccccccCccee
Confidence 23677888999987 79999999999999999999764 222333333332222
Q ss_pred EEecC--C--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeC
Q psy12802 185 LSWPA--G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS 252 (1637)
Q Consensus 185 ~~~~~--~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~ 252 (1637)
..|+| + .+++|+.||+|++|| .+++....+.. +...|.+++|||||++|++++.+++.+|.+.
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-----~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-----LGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-----CSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 23333 2 456678899999999 77877776663 5568999999999999999999997777654
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1.6e-23 Score=253.08 Aligned_cols=282 Identities=16% Similarity=0.072 Sum_probs=191.5
Q ss_pred CCceeEEEE---cCCCCEEEEEeCCCeEEEEEcCCCC----------------cccceEEEEEC----------------
Q psy12802 11 SNVLQDDVF---NLDIVRLRSEGNVAGIWAWRGQNGR----------------KSYVVKGLAFS---------------- 55 (1637)
Q Consensus 11 ~~~i~~~~~---spdg~~la~~~~d~~i~vwd~~~~~----------------h~~~V~~~~~s---------------- 55 (1637)
+.....+.| +|++..+++++.++.|.+|+..... +...+..+.|+
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 344556666 4555445555558889999763211 23345555544
Q ss_pred ----CCCCeEEEEECCCeEEEEEcCCCCCC-ceeEeeccCCCCCEEEEEEcC--------CCC-EEEEeCCCcEEEEEcC
Q psy12802 56 ----PDSTKLAVAQSDNIIFIYKLGDDWGD-KKVICNKFIQQCPVTTMVWLA--------DGP-IIYGQSDGKIKAAHVK 121 (1637)
Q Consensus 56 ----pd~~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~--------~~~-l~~~~~d~~v~vwd~~ 121 (1637)
|++.+|++++.|++|+|||+.++... ...+....+|.+.|++++|+| |++ |++++.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 45568999999999999999875211 123445678999999999998 788 9999999999999998
Q ss_pred CCce-eeecccCCcEEEEEEecCCC-eEEEEeCCCcEEEEEecCCCCcc--------------------cccccccccCC
Q psy12802 122 ANKT-QTLYASNSFVVALCLNVRGA-GVLSGHADGSIVRYYVTEDASNF--------------------DQQQGRVVQHP 179 (1637)
Q Consensus 122 ~~~~-~~~~~~~~~v~~l~~s~~g~-~l~s~~~dg~i~iwd~~~~~~g~--------------------~~~~~~~~~~~ 179 (1637)
++.. ..+.+|...|.+++|+|++. .|++|+.||+|++||+.+..... ........+|.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 8776 78889999999999999875 79999999999999998642100 00001123678
Q ss_pred CCcEEEEec-C--CeEEEEecCCeEEEEe-CCCceeEEeeccCCC-------------CCCccEEEEEECC--CCCEEEE
Q psy12802 180 VPPYALSWP-A--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-------------YKEREFTVACSSP--SGQAVVV 240 (1637)
Q Consensus 180 ~~v~~~~~~-~--~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~-------------~~~~~i~~~~~sp--~g~~l~~ 240 (1637)
..+.++.|+ | ..+++++.|+++++|| ..++....+..+... ..........|+| ++.++++
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 889999996 4 3899999999999999 555554444322110 0001111223333 3446677
Q ss_pred EecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEc
Q psy12802 241 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 241 ~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
|+.|+ |++||...+... .....+..+|.+++|||||++|++++.+| +.+|.+
T Consensus 335 gs~Dg~V~lwd~~~~~~~-----~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKDSN-----SIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ETTTTEEEEEETTCTTCC-----EEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ECCCCEEEEEECCCCcEE-----EEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 88888 999999876543 33455777999999999999999998766 556665
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.5e-23 Score=243.98 Aligned_cols=231 Identities=13% Similarity=0.016 Sum_probs=177.4
Q ss_pred EEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcC---------C
Q psy12802 52 LAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVK---------A 122 (1637)
Q Consensus 52 ~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~---------~ 122 (1637)
..+.+|+..|++|+.||+|++||+.++. .+.... ...|.++.|+|+ +++++.|++|++|+.. +
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~----~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSK----TITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSS----CEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCc----EEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence 3456788999999999999999998752 222211 466778888888 9999999999999665 4
Q ss_pred Cce-ee-ecccCCcEEEEEEec--CCCeEEEEeCCCcEEEEEecCCCCccccccccc-ccCCCCcEEEEecCC--eEEEE
Q psy12802 123 NKT-QT-LYASNSFVVALCLNV--RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRV-VQHPVPPYALSWPAG--YILAA 195 (1637)
Q Consensus 123 ~~~-~~-~~~~~~~v~~l~~s~--~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~~--~l~~~ 195 (1637)
++. .. ..+|...|.+++|+| +++++++|+.||+|++||+.+. ...... ..|...+.+++|+|+ .+++|
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-----SQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-----CEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-----cEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 443 22 336778999999999 9999999999999999999874 443333 345668999999984 78889
Q ss_pred ecCCeEEEEe-CCCcee-EEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcce-
Q psy12802 196 GSDRIVTIYE-SDGRVH-RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTI- 272 (1637)
Q Consensus 196 ~~d~~i~iwd-~~~~~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i- 272 (1637)
+.||.|++|| .+++.+ ..+.. .|...|++++|+|+|.+|++++.+.|++||++.......... ...+...+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~--~~~~~~~~~ 262 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPT--YTIPEFKTG 262 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCC--CBC-----C
T ss_pred cCCCEEEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecc--ccccccccc
Confidence 9999999999 777776 66763 267799999999999999999965699999987654321111 00122233
Q ss_pred -eEEEEcCCCCEEEEEec-CCcEEEEEcccc
Q psy12802 273 -SALSWKRDGSRIACGGL-CGSVELFESVLK 301 (1637)
Q Consensus 273 -~~l~~spdg~~l~~~~~-dg~v~iwd~~~~ 301 (1637)
.+++|+|+|++|++++. |+.|++|++...
T Consensus 263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 46999999999999998 999999998544
No 129
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.9e-22 Score=259.12 Aligned_cols=431 Identities=11% Similarity=0.007 Sum_probs=275.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCH-------HHHH
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNEN-------EKAL 933 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~-------~~a~ 933 (1637)
+..+.+.|++++|+.+|.++.... ++...+..++..+...|++++|..+|.++... ...+
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~-------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLDIT-------------GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHhhC-------------CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 556777888888888887762111 24466777888999999999999999887422 3456
Q ss_pred HHHHhCCChHHHHHHHHHhCCCC------------------hHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHH
Q psy12802 934 ECYRKGKVYDKCIDLTRKINPKN------------------VTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSI 995 (1637)
Q Consensus 934 ~~y~~~~~~~~A~~l~~~~~~~~------------------~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~ 995 (1637)
.+|.+.|++++|++++++..|.. ....+..+|..|...|++++|+.+|.++...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 229 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-------- 229 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 77888888888888888655544 3567778888888888888888888776321
Q ss_pred HccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH---HHhccC---------HHHHHHHHHHcCCHHHHH
Q psy12802 996 KAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI---YSHCDM---------HEQIVDMYHQTGQWEKAY 1063 (1637)
Q Consensus 996 ~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~---~~~~~~---------~~~~~~~y~~~g~~~~A~ 1063 (1637)
.|+ ....+..++..+...+..+.+... |.++.. +..++.+|.+.|++++|+
T Consensus 230 ----------------~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 230 ----------------DAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp ----------------CTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred ----------------Cch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 122 233333333333222211111100 000000 011133444555666666
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCC--------chHHHHHHHhcCCHHHHHHHHHhhCC--Cch
Q psy12802 1064 AIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGE--------PDLAISMFKNQRQYENMIKLVRNYHP--DLL 1133 (1637)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~--------~~~ai~~~~~~~~~~~a~~~~~~~~~--~~~ 1133 (1637)
++++++...+....++..+|..|...|++++|+++|.++.. ....+.+|.+.|++++|.+++++... +..
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 66665544444566677777777777777777777766311 11223446666666666666664321 233
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHcc--------CHHHHHHHHHhcCCHHHHHHHHHhc-----CCccchHHHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCN--------EWKLAIKMYRSLNLWEDAYRIALSN-----GGQEAVEPVVYLWA 1200 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~--------~~~~~~~~y~~~g~~~~A~~~~~~~-----~~~~~~~~l~~~~~ 1200 (1637)
..++..+|..|.+.|++++|.++|.++- .|..++.+|.+.|++++|+++++++ .+..++..++..|.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5677778888888888888888888761 2556666777777777777766542 23445566666666
Q ss_pred HhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHH
Q psy12802 1201 KSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAI 1280 (1637)
Q Consensus 1201 ~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai 1280 (1637)
+.|++++|+++|.++. ...+..+.++..+|..|...|++++|++.|.++ +
T Consensus 453 ~~g~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~ 502 (597)
T 2xpi_A 453 QLGNILLANEYLQSSY------------------------ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA------L 502 (597)
T ss_dssp HHTCHHHHHHHHHHHH------------------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred HcCCHHHHHHHHHHHH------------------------HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH------H
Confidence 6666666666654430 114557788999999999999999999999887 4
Q ss_pred HHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCC
Q psy12802 1281 SMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPS 1360 (1637)
Q Consensus 1281 ~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~ 1360 (1637)
.+.... ...|.....++..++..+...|++++|+..|.++ ++.
T Consensus 503 ~~~~~~-----------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------~~~------- 545 (597)
T 2xpi_A 503 LLVKKT-----------QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG-------------------LLL------- 545 (597)
T ss_dssp HHHHHS-----------CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHH-------
T ss_pred Hhhhcc-----------ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------HHh-------
Confidence 333110 1134444788999999999999998888777443 221
Q ss_pred ChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch
Q psy12802 1361 KLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~ 1412 (1637)
.|.+..++..++..|.+.|++++|+++|.++.+..+
T Consensus 546 ----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 546 ----------------STNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp ----------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 122344689999999999999999999998764443
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=8.5e-23 Score=226.90 Aligned_cols=216 Identities=10% Similarity=0.052 Sum_probs=163.1
Q ss_pred ecCCCCCceeEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCcccceEEEEECCCCCeEEEEE--CCCeEEEEEcCCCC
Q psy12802 6 YTDVSSNVLQDDVFNLD----IVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQ--SDNIIFIYKLGDDW 79 (1637)
Q Consensus 6 ~~~~~~~~i~~~~~spd----g~~la~~~~d~~i~vwd~~~~~h~~~V~~~~~spd~~~la~~~--~d~~i~iw~~~~~~ 79 (1637)
.=+++...|+.++|||| ++++++++.+ +.+|++ |+|+.+.+++ .|+.|++|++...
T Consensus 106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l---------------~~g~lv~ss~~g~d~~V~~~~~s~d- 167 (356)
T 2w18_A 106 LGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL---------------TKRRLVSSSGTLSDQQVEVMTFAED- 167 (356)
T ss_dssp ECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------TTTEEEEEESSSTTCEEEEEEECTT-
T ss_pred eccccccceEEEEECCCccccccEEEeCCCe--EEEEec---------------CCCcEEEecccCCCCcEEEEEECCC-
Confidence 33455667888888888 8888887743 666643 4555555543 5999999999553
Q ss_pred CCceeEeeccCCCCCEEEEEEcC---CCC-EEEEeCCCcEEEEEcCCCce-eeecccC---CcEEEEEEecCCCeE----
Q psy12802 80 GDKKVICNKFIQQCPVTTMVWLA---DGP-IIYGQSDGKIKAAHVKANKT-QTLYASN---SFVVALCLNVRGAGV---- 147 (1637)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~s~---~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~---~~v~~l~~s~~g~~l---- 147 (1637)
.+.+.....|+..++.++|+| ++. +++++.|++|++||+++|++ .++.+|. ..+.+++|+|+|..+
T Consensus 168 --G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 168 --GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp --SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred --CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence 345556668889999999999 667 99999999999999999998 7777654 367788999999886
Q ss_pred --------EEEeCCCcEEEEEecCCCCccccccccc-----ccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEE
Q psy12802 148 --------LSGHADGSIVRYYVTEDASNFDQQQGRV-----VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRI 213 (1637)
Q Consensus 148 --------~s~~~dg~i~iwd~~~~~~g~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~ 213 (1637)
++|+.|++|++||..+. ..+..+ .+|...+.+..++...+++++.|++|++|| .+|+++.+
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~tg-----k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t 320 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKTT-----LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL 320 (356)
T ss_dssp ------------CCEEEEEEETTTT-----EEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred cCCCcceeeccCCCcEEEEEECCCC-----EEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 56788999999998763 444333 367666666677766889999999999999 89999999
Q ss_pred eeccCCCCCCcc-EEEEEECCCCCEEEEEecCc-EEEEEe
Q psy12802 214 FDYTAPHYKERE-FTVACSSPSGQAVVVGSYDN-IKLFAW 251 (1637)
Q Consensus 214 ~~~~~~~~~~~~-i~~~~~sp~g~~l~~~~~d~-i~i~~~ 251 (1637)
+.. |... +.+++|||||++|++|+.|+ |+|||+
T Consensus 321 L~g-----H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 LPP-----VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECC-----C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ecC-----CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 984 3334 44689999999999999999 999986
No 131
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=2.6e-21 Score=250.19 Aligned_cols=414 Identities=9% Similarity=-0.031 Sum_probs=215.3
Q ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHhCC-------hHHHHHHHHHccCHHHHHHHHHhhc-cccchHHHHHHHHHHHH
Q psy12802 957 VTALEEEWGDHLIENKQYNAAINHYIEAGK-------NNKALDTSIKAKQWKKAVQILQVIT-NKQDIAQHVKTLAQHFK 1028 (1637)
Q Consensus 957 ~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~-------~~~ai~~~~~~~~~~~A~~l~~~~~-~~~~~~~~~~~la~~~~ 1028 (1637)
....+..++..+...|++++|+.+|.++.. +...+.+|.+.|++++|+.+++.+. .+. .+.++..++.+|.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR-SSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcccc-chhHHHHHHHHHH
Confidence 344555666666666777777666665421 1222334444444444444444431 122 4556666777777
Q ss_pred HhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCc---
Q psy12802 1029 TVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEP--- 1105 (1637)
Q Consensus 1029 ~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~--- 1105 (1637)
+.|++++|+++|.++.........+.+.+. .....+....+++.+|..|.+.|++++|++.|.++...
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLM---------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------C---------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhHHHHHHHHhccCCccccccccccccc---------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 777777777776643211100000000000 00000223455555555555556665555555552110
Q ss_pred -hHH------------------------------------------HHHHHhcCCHHHHHHHHHhhCC-CchHHHHHHHH
Q psy12802 1106 -DLA------------------------------------------ISMFKNQRQYENMIKLVRNYHP-DLLDTTLLHLA 1141 (1637)
Q Consensus 1106 -~~a------------------------------------------i~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~la 1141 (1637)
..+ +.+|.+.|++++|.+++++... +....++..+|
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 312 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA 312 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 011 1124455666666666665443 23345666677
Q ss_pred HHHHHccCHHHHHHHHHHc--------cCHHHHHHHHHhcCCHHHHHHHHHhc-----CCccchHHHHHHHHHhcCcchH
Q psy12802 1142 QECEESKNYKQAEKYYLDC--------NEWKLAIKMYRSLNLWEDAYRIALSN-----GGQEAVEPVVYLWAKSLGGDSA 1208 (1637)
Q Consensus 1142 ~~~~~~g~~~~A~~~y~~a--------~~~~~~~~~y~~~g~~~~A~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A 1208 (1637)
..|...|++++|+.+|.++ ..+..++.+|.+.|++++|.+++++. .+...+..++..|.+.|++++|
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHH
Confidence 7777777777777777665 12555666666666666666666542 2333455556666666666666
Q ss_pred HHHHHHhc--------cHHHHHHHHHhcCChHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHH
Q psy12802 1209 VRLLNRLS--------LLESCISNACDTYQFDFAFELAKIGM--KSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKE 1278 (1637)
Q Consensus 1209 ~~~~~~~~--------~~~~~i~~~~~~~~~~~a~~l~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 1278 (1637)
+++|.++. .+...+..|.+.|++++|+++++.+. .+....++..++..|...|++++|++.|.++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 467 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS----- 467 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Confidence 66655421 22333344444444444444444321 2233344444444444444444444444443
Q ss_pred HHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhC
Q psy12802 1279 AISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYV 1358 (1637)
Q Consensus 1279 ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~ 1358 (1637)
.+..|. .+.++..++..+...|++++|+.+|.+ +++...+.
T Consensus 468 ------------------~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------~~~~~~~~- 508 (597)
T 2xpi_A 468 ------------------YALFQY-DPLLLNELGVVAFNKSDMQTAINHFQN-------------------ALLLVKKT- 508 (597)
T ss_dssp ------------------HHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHHHHS-
T ss_pred ------------------HHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH-------------------HHHhhhcc-
Confidence 112333 345566666666666666666555532 22222211
Q ss_pred CCChhHHHHHHHHHHhcccccc-hHHHHHHHHHHHHcCCHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHhccCccchhh
Q psy12802 1359 PSKLPLLQQEYEKEINTNISKD-IHSLITQARQWEQNGEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLKYLNHDQSYK 1437 (1637)
Q Consensus 1359 p~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 1437 (1637)
+..|.. ...+..++..|.+.|++++|++.|.++....+ ....
T Consensus 509 ----------------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---------------------~~~~ 551 (597)
T 2xpi_A 509 ----------------QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST---------------------NDAN 551 (597)
T ss_dssp ----------------CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---------------------CCHH
T ss_pred ----------------ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------------CChH
Confidence 011221 45699999999999999999999997652211 1224
Q ss_pred hhhhhhhhhhhccCHHHHHHHHhc
Q psy12802 1438 ILPSLVPKLMEFKQYDLAVRVYLN 1461 (1637)
Q Consensus 1438 ~~~~~~~~l~~~~~~~~A~~~y~~ 1461 (1637)
+...++..+.+.|++++|.+.|.+
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 566677777777777777765544
No 132
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=7.8e-21 Score=230.83 Aligned_cols=228 Identities=11% Similarity=0.131 Sum_probs=181.0
Q ss_pred CceeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEE-CCCeEEEEEcCCCCCCce
Q psy12802 12 NVLQDDVFNLDIVRL-RSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQ-SDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 12 ~~i~~~~~spdg~~l-a~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~-~d~~i~iw~~~~~~~~~~ 83 (1637)
..+.+++|+|||+++ ++++.++.|++||..+++ +...|.+++|+|++++|++++ .++.|++||+.++ +
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~----~ 107 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----T 107 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----E
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCC----e
Confidence 358999999999987 567789999999998776 345899999999999887555 6699999999874 3
Q ss_pred eEeeccCCCCCEEEEEEcCCCC-E-EEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeE-EEEeCCCcEEEEE
Q psy12802 84 VICNKFIQQCPVTTMVWLADGP-I-IYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGV-LSGHADGSIVRYY 160 (1637)
Q Consensus 84 ~~~~~~~~~~~v~~v~~s~~~~-l-~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd 160 (1637)
.+... .+...+.+++|+|+++ + ++++.++.|++||+.+++......+...+.+++|+|+|+.+ ++++.++.|++||
T Consensus 108 ~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 108 VAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp EEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEE-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 33322 3456789999999999 6 67888999999999999884333344567999999999987 5777899999999
Q ss_pred ecCCCCcccccccccccCCCCcEEEEecCC--eEEEEe---cCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 161 VTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAG---SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 161 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~---~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
+.+. .....+ .+...+.+++|+|+ .+++++ .++.|.+|| .+++.+..+..+ ..+.+++|+|+
T Consensus 187 ~~~~-----~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~d 254 (391)
T 1l0q_A 187 TVTN-----SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG------PDPAGIAVTPD 254 (391)
T ss_dssp TTTT-----EEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC------SSEEEEEECTT
T ss_pred CCCC-----eEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC------CCccEEEEccC
Confidence 9873 333333 45678899999984 677766 689999999 778888777643 24789999999
Q ss_pred CCEE-EEEecCc-EEEEEeCCCCC
Q psy12802 235 GQAV-VVGSYDN-IKLFAWSPSKS 256 (1637)
Q Consensus 235 g~~l-~~~~~d~-i~i~~~~~~~~ 256 (1637)
|+.+ ++++.++ |++||...+..
T Consensus 255 g~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 255 GKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcE
Confidence 9988 5556777 99999886543
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=7.4e-22 Score=239.56 Aligned_cols=264 Identities=11% Similarity=0.074 Sum_probs=199.1
Q ss_pred ceeEEEEcCCCC-EEEEEe----CCC----eEEEEEc--CCCC---------cccceEEEEECC--------------CC
Q psy12802 13 VLQDDVFNLDIV-RLRSEG----NVA----GIWAWRG--QNGR---------KSYVVKGLAFSP--------------DS 58 (1637)
Q Consensus 13 ~i~~~~~spdg~-~la~~~----~d~----~i~vwd~--~~~~---------h~~~V~~~~~sp--------------d~ 58 (1637)
.++...|+++|. .+++|+ .+| +|++||+ .+++ |...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 566778889885 555765 467 8999999 7766 333455555554 26
Q ss_pred CeEEEEECC------CeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC---cEEEEEcCCCceeee
Q psy12802 59 TKLAVAQSD------NIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG---KIKAAHVKANKTQTL 128 (1637)
Q Consensus 59 ~~la~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~---~v~vwd~~~~~~~~~ 128 (1637)
..++.++.+ +.|++||+... .. .....|...|.+++|||||+ +++++.++ .|++||+.+++...+
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY--NQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC--SC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC--CC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 777776654 79999999752 12 23335788999999999999 99888775 999999999998888
Q ss_pred cccCCcEEEEEEecCCCeEE-EEeCCCc--EEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEec-CC--e
Q psy12802 129 YASNSFVVALCLNVRGAGVL-SGHADGS--IVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGS-DR--I 200 (1637)
Q Consensus 129 ~~~~~~v~~l~~s~~g~~l~-s~~~dg~--i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~-d~--~ 200 (1637)
..|...+.+++|+|||+.|+ +++.++. |++||+.+. ....+..|...+.+++|+|+ .|++++. ++ .
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 88999999999999999888 6666655 899998762 33567788889999999985 6777665 44 6
Q ss_pred EEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC---c-EEEEEeCCCCCccccCCCcccCCCcceeEEE
Q psy12802 201 VTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS 276 (1637)
Q Consensus 201 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 276 (1637)
|.+||..+.....+. .+...+.+++|+|+|+.|++++.+ . |.+||..++... ....+ ..+.+++
T Consensus 293 i~~~d~~~~~~~~l~-----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~------~l~~~-~~~~~~~ 360 (415)
T 2hqs_A 293 VYKVNINGGAPQRIT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ------VLSST-FLDETPS 360 (415)
T ss_dssp EEEEETTSSCCEECC-----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE------ECCCS-SSCEEEE
T ss_pred EEEEECCCCCEEEEe-----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE------EecCC-CCcCCeE
Confidence 777784444444444 244578899999999999988875 3 888888765431 11122 3789999
Q ss_pred EcCCCCEEEEEecCC---cEEEEEcc
Q psy12802 277 WKRDGSRIACGGLCG---SVELFESV 299 (1637)
Q Consensus 277 ~spdg~~l~~~~~dg---~v~iwd~~ 299 (1637)
|+|||+.|++++.++ .|++||+.
T Consensus 361 ~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred EcCCCCEEEEEEcCCCccEEEEEECC
Confidence 999999999888777 79999985
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=3.5e-21 Score=240.48 Aligned_cols=327 Identities=12% Similarity=0.092 Sum_probs=233.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCc------ccceEEEEECCCCCeEEEEECCCeEEEEEc--CCCCCCceeEeecc
Q psy12802 18 VFNLDIVRLRSEGNVAGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKL--GDDWGDKKVICNKF 89 (1637)
Q Consensus 18 ~~spdg~~la~~~~d~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~~d~~i~iw~~--~~~~~~~~~~~~~~ 89 (1637)
+|+|++.++++++.+++|.+||..+++. ...+.+++|||||++|++++.|++|.+||+ .++ +.+...
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----~~~~~i- 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP----TKVAEI- 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCC----cEEEEE-
Confidence 4899999999999999999999998762 334889999999999999999999999999 553 333332
Q ss_pred CCCCCEEEEEEcC----CCC-EEEEe-CCCcEEEEEcCCCce-eeecc----------c-CCcEEEEEEecCCCe-EEEE
Q psy12802 90 IQQCPVTTMVWLA----DGP-IIYGQ-SDGKIKAAHVKANKT-QTLYA----------S-NSFVVALCLNVRGAG-VLSG 150 (1637)
Q Consensus 90 ~~~~~v~~v~~s~----~~~-l~~~~-~d~~v~vwd~~~~~~-~~~~~----------~-~~~v~~l~~s~~g~~-l~s~ 150 (1637)
.+...+.+++|+| ||+ +++++ .+++|.+||..++++ .++.. | ...+.++.++|++.. +++.
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 2456689999999 999 77766 589999999999987 44443 2 237899999998766 5566
Q ss_pred eCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEE-ecCCeEEEEe-CCCceeEEeeccCCCCCCccE
Q psy12802 151 HADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAA-GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREF 226 (1637)
Q Consensus 151 ~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~-~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i 226 (1637)
..+++|.+||..+... .......+...+..+.|+|+ +++++ ..+++|.+|| .+++++..+..... +|....
T Consensus 299 ~~~g~i~vvd~~~~~~----l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-ph~g~g 373 (543)
T 1nir_A 299 KETGKVLLVNYKDIDN----LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGRG 373 (543)
T ss_dssp TTTTEEEEEECTTSSS----CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-BCCTTC
T ss_pred CCCCeEEEEEecCCCc----ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-CCCCCC
Confidence 6789999999987421 11122346777889999984 45554 5689999999 88998888875433 344333
Q ss_pred EEEEECCC-CCEEEEEe-cCc-EEEEEeCCCCC---ccccCCCccc-CCCcceeEEEEcCCCCEEEEEe-------cCCc
Q psy12802 227 TVACSSPS-GQAVVVGS-YDN-IKLFAWSPSKS---VWEEQPNKTI-PNLYTISALSWKRDGSRIACGG-------LCGS 292 (1637)
Q Consensus 227 ~~~~~sp~-g~~l~~~~-~d~-i~i~~~~~~~~---~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~-------~dg~ 292 (1637)
..+ ++|+ |..+++++ .++ |.+|+.++... .|.. ...+ .+...+..+.++|||++|.+++ .+++
T Consensus 374 ~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~--v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 374 ANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK--VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred ccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE--EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 333 5777 66666665 455 99999987321 1221 2222 2345678899999999999987 3779
Q ss_pred EEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEe------CCCcEEEe
Q psy12802 293 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR------TPDTLLLG 366 (1637)
Q Consensus 293 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~------~~~~i~i~ 366 (1637)
|.+||+.+++..++. +.+...+ -+ ...+..+..+.|+|+|+.+..+ .++.|.||
T Consensus 451 v~v~d~~~~~~~~~~-----------~~v~~~~--------~~-~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 451 VAVFDLKNLDAKYQV-----------LPIAEWA--------DL-GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp EEEEETTCTTSCCEE-----------ECHHHHH--------CC-CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred EEEEECCCCCCCeEE-----------eechhhc--------cc-CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 999999876532110 0000000 00 1123478899999998777653 36999999
Q ss_pred eccccceeeee
Q psy12802 367 DLHRNLLSEVL 377 (1637)
Q Consensus 367 d~~~~~~~~~~ 377 (1637)
|..+.++....
T Consensus 511 D~~t~~~~~~i 521 (543)
T 1nir_A 511 DDKTLKLKAVV 521 (543)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCceEEEee
Confidence 99998876543
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=2.7e-21 Score=256.61 Aligned_cols=321 Identities=10% Similarity=0.091 Sum_probs=225.3
Q ss_pred CCceeEEEEcCCCCEEEEEeC-CC-----eEEEEEcCCCC-------cc------------------------cceEEEE
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGN-VA-----GIWAWRGQNGR-------KS------------------------YVVKGLA 53 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~-d~-----~i~vwd~~~~~-------h~------------------------~~V~~~~ 53 (1637)
...+++++|||||++|++++. ++ .|++||+.+++ +. ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567899999999999999988 87 89999998876 11 2388999
Q ss_pred ECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeec-cc
Q psy12802 54 FSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLY-AS 131 (1637)
Q Consensus 54 ~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~-~~ 131 (1637)
|||||++|++++. +.|++||+.++... .......|...+.+++|||||+ +++++ ++.|++||+.+++...+. .+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~--~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKA--AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTT--SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcc--eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 99999999874100 1223445778899999999999 77776 568999999998874443 33
Q ss_pred CCc----------------EEEEEEecCCCeEEEEeCCC---------------------------------cEEEEEec
Q psy12802 132 NSF----------------VVALCLNVRGAGVLSGHADG---------------------------------SIVRYYVT 162 (1637)
Q Consensus 132 ~~~----------------v~~l~~s~~g~~l~s~~~dg---------------------------------~i~iwd~~ 162 (1637)
... +.+++|||||+.|++++.|+ .|.+||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 322 47899999999999998765 78888887
Q ss_pred C-CCCcccccccccccCCCCcEEEEecCC--eEEEEec-----CCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC
Q psy12802 163 E-DASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGS-----DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP 233 (1637)
Q Consensus 163 ~-~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~-----d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp 233 (1637)
+ ... ..+.....|...+.+++| |+ .|++++. +..|.+|| .+++....+..+.. .....+..++|+|
T Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~sp 346 (741)
T 2ecf_A 272 EQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-TWVPLHNSLRFLD 346 (741)
T ss_dssp TTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-SCCCCCSCCEECT
T ss_pred CCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-CcCCcCCceEECC
Confidence 5 421 111111247788999999 94 6665543 56899999 77777666654321 1111345789999
Q ss_pred CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEE-EEcCCCCEEEE-EecCC--cEEEEEccccceeeeCc
Q psy12802 234 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL-SWKRDGSRIAC-GGLCG--SVELFESVLKRTIWKGK 308 (1637)
Q Consensus 234 ~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~spdg~~l~~-~~~dg--~v~iwd~~~~~~~~~~~ 308 (1637)
||+++++++.++ ++||.++..... .....+...+.++ .|+|||+.|+. ++.++ .+++|++.....
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~~-----~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~----- 416 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGKA-----AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG----- 416 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSCE-----EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC-----
T ss_pred CCeEEEEecCCCccEEEEEcCCCCe-----eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-----
Confidence 999888888888 888888743321 1222345567777 59999998764 44455 899999853110
Q ss_pred EEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEe-C----CCcEEEeecccccee
Q psy12802 309 FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-T----PDTLLLGDLHRNLLS 374 (1637)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~-~----~~~i~i~d~~~~~~~ 374 (1637)
....+.. ...+..+.|||++++++.. + ...+.+++..++.+.
T Consensus 417 ----------------------~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~ 463 (741)
T 2ecf_A 417 ----------------------QPQRLSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIA 463 (741)
T ss_dssp ----------------------CCEECCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred ----------------------Ceeeccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEE
Confidence 0111111 2246789999998777652 2 246888887665443
No 136
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.2e-21 Score=217.86 Aligned_cols=278 Identities=11% Similarity=0.068 Sum_probs=178.3
Q ss_pred eecCCCCC---ceeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCC----------cccceEEEEECCCCCeEE-EEECC
Q psy12802 5 KYTDVSSN---VLQDDVFNLDIV---RLRSEGNVAGIWAWRGQNGR----------KSYVVKGLAFSPDSTKLA-VAQSD 67 (1637)
Q Consensus 5 k~~~~~~~---~i~~~~~spdg~---~la~~~~d~~i~vwd~~~~~----------h~~~V~~~~~spd~~~la-~~~~d 67 (1637)
++.+...+ .+..+.|-+-|- .+++++ ...|++|+..++. |..+|..+.|+||..-|+ ++-.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 108 (356)
T 2w18_A 30 ELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN 108 (356)
T ss_dssp EECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS
T ss_pred hhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc
Confidence 45555332 234555655443 566666 5599999999873 566788888888644332 22211
Q ss_pred -CeEEEEEcCCCCC--CceeEeeccCCCCCEEEEEEcCCCCEEEEe---CCCcEEEEEcC-CCce-eeecccCCcEEEEE
Q psy12802 68 -NIIFIYKLGDDWG--DKKVICNKFIQQCPVTTMVWLADGPIIYGQ---SDGKIKAAHVK-ANKT-QTLYASNSFVVALC 139 (1637)
Q Consensus 68 -~~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~---~d~~v~vwd~~-~~~~-~~~~~~~~~v~~l~ 139 (1637)
..-.++.+.-... .........+|...|.++ ++++++.++ .|+.|++|++. +|+. ..+.+|...+..++
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 1112222221100 001111112344344443 556654443 48899999984 4665 77789999999999
Q ss_pred Eec---CCCeEEEEeCCCcEEEEEecCCCCcccccccccccCC---CCcEEEEecCC--eE------------EEEecCC
Q psy12802 140 LNV---RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHP---VPPYALSWPAG--YI------------LAAGSDR 199 (1637)
Q Consensus 140 ~s~---~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~---~~v~~~~~~~~--~l------------~~~~~d~ 199 (1637)
|+| +++.|++|+.|++|++||+.+ | +++.++.+|. ..+.+++|+|+ .+ ++|+.|+
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~T---G--k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKT---G--QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTT---C--CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCC---C--cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 999 789999999999999999998 4 7778887654 36777789884 33 5688899
Q ss_pred eEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcc-eeEEE
Q psy12802 200 IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-ISALS 276 (1637)
Q Consensus 200 ~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~-i~~l~ 276 (1637)
+|++|| .+|+.+..+....+.+|...+.+..+ ++..+++++.|+ |+|||+.+++.. .....|... +.+++
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l-----~tL~gH~~~vvs~va 333 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT-----ALLPPVSDQHWSFVK 333 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE-----EEECCC--CCCCEEE
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE-----EEecCCCCCeEEEEE
Confidence 999999 77887766532111134444444444 488999999999 999999887653 122235444 44689
Q ss_pred EcCCCCEEEEEecCCcEEEEEc
Q psy12802 277 WKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 277 ~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
|||||++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999996
No 137
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=99.88 E-value=1.3e-29 Score=279.42 Aligned_cols=454 Identities=14% Similarity=0.163 Sum_probs=344.4
Q ss_pred HHHHHHHHhCChHHHHHHHH-HccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccC---HHHHHH
Q psy12802 976 AAINHYIEAGKNNKALDTSI-KAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDM---HEQIVD 1051 (1637)
Q Consensus 976 ~A~~~~~~~~~~~~ai~~~~-~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 1051 (1637)
-|..+|.|.....+|+++.+ ..++.++|.+++++...|+ +|..||.++...++..+|++.|.|+++ +.+.++
T Consensus 16 ~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~----VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~ 91 (624)
T 3lvg_A 16 PRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPA----VWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQ 91 (624)
T ss_dssp -----------CCSTTTTCCGGGCCSTTTTTSSSSCCCCC----CSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHH
T ss_pred hHHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHhCCcc----HHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHH
Confidence 57888999988889998877 5778999999999998887 799999999999999999999999976 467899
Q ss_pred HHHHcCCHHHHHHHHHhhc---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhh
Q psy12802 1052 MYHQTGQWEKAYAIAEQHL---NVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNY 1128 (1637)
Q Consensus 1052 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~ 1128 (1637)
...++|+|++-++.+.... ..+..... + +-.|.+.++..+..+++...
T Consensus 92 ~A~~~~~~edLv~yL~MaRk~~ke~~IDte---L--------------------------i~ayAk~~rL~elEefl~~~ 142 (624)
T 3lvg_A 92 AANTSGNWEELVKYLQMARKKARESYVETE---L--------------------------IFALAKTNRLAELEEFINGP 142 (624)
T ss_dssp HTTTSSCCTTHHHHHHTTSTTCCSTTTTHH---H--------------------------HHHHHTSCSSSTTTSTTSCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccHHH---H--------------------------HHHHHhhCcHHHHHHHHcCC
Confidence 9999999999988876542 22222211 1 33466666766666666543
Q ss_pred CCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchH
Q psy12802 1129 HPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSA 1208 (1637)
Q Consensus 1129 ~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 1208 (1637)
+...+ ..+|+-|+.+|.|+.|.-+|..+.+|.+++.++.++|+++.|++.+++..++.+|++|..+|...++++-|
T Consensus 143 N~A~i----q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 143 NNAHI----QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp SSSCT----HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred CcccH----HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 33333 67999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred ----HHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcC--CCCcHHHHHHHHHHHH---------------hCCChHHHH
Q psy12802 1209 ----VRLLNRLSLLESCISNACDTYQFDFAFELAKIGM--KSKLEEVHYKYALVLE---------------DNGQFNEAE 1267 (1637)
Q Consensus 1209 ----~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~--~~~~~~~~~~~a~~~~---------------~~g~~~~A~ 1267 (1637)
+.+...+..+++.+..|.+.|.|++.+.|++.+. +..-......+|..|. .+-+..+-+
T Consensus 219 qicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 219 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp THHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTH
T ss_pred HHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHH
Confidence 7888889999999999999999999999998665 3334445555555544 445667777
Q ss_pred HHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCCh
Q psy12802 1268 TQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMW 1347 (1637)
Q Consensus 1268 ~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~ 1347 (1637)
+.+.++..|.|++.+|.+..+|+.|..++.+|.++ .++++.|++.+.-.....-+.+|+.+|
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~------------Aw~h~~Fkdii~KVaN~EiyYKAi~FY------ 360 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD------------AWKEGQFKDIITKVANVELYYRAIQFY------ 360 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH------------HCCGGGGTTTGGGCSCSHHHHHHHHHH------
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh------------hccHHHHHHHHHHcchHHHHHHHHHHH------
Confidence 88899999999999999999999999999888666 788899998876555555556777788
Q ss_pred HHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch--hHHHHHHHHHHHH
Q psy12802 1348 NDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV--NLMVKILNEVTQL 1425 (1637)
Q Consensus 1348 ~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~ 1425 (1637)
-+..|..+.+| |..+.. .=|..+.++.+.|...... +++..+.
T Consensus 361 -------L~e~P~lL~DL------------------L~vL~p----rlDh~RvV~~~~k~~~LpLIkpYL~~Vq------ 405 (624)
T 3lvg_A 361 -------LEFKPLLLNDL------------------LMVLSP----RLDHTRAVNYFSKVKQLPLVKPYLRSVQ------ 405 (624)
T ss_dssp -------TTSCCTTSHHH------------------HHHHCT----TCCSTTTHHHHHTTTCGGGGTGGGTSCC------
T ss_pred -------HHhChHHHHHH------------------HHhccc----cCChHHHHHHHHhcCCchhhHHHHHHHH------
Confidence 78889988876 333333 3478888888888876544 2222111
Q ss_pred HHhccCccchhhhhhhhhhhhhhccCHH---HHHHHHhcccchHHHHHHHHhccchHHHHHHHHhhCcchHHHHHHHHHH
Q psy12802 1426 TLKYLNHDQSYKILPSLVPKLMEFKQYD---LAVRVYLNIDMVKEAVDIFIYTQNWNKARKLCAELKPEYLSYVENQYKE 1502 (1637)
Q Consensus 1426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~A~~~y~~~~~~~~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 1502 (1637)
......|-..+-..|.+..+|+ .+++.|.+.++ +.+|++++.+...++++..+.
T Consensus 406 ------~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~-----------------i~LA~rLEkHeL~eFRrIAA~ 462 (624)
T 3lvg_A 406 ------NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDN-----------------ISLAQRLEKHELIEFRRIAAY 462 (624)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCT-----------------THHHHHHHTCSSHHHHHHHHH
T ss_pred ------HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccH-----------------HHHHHHHhhCchHHHHHHHHH
Confidence 1111233344445555555555 45555666665 677888888888999988777
Q ss_pred HHHhcCCCccccccCHHHHHHHHHHcccHHHHHHHHHhhChhhHHHHH
Q psy12802 1503 WLKKNGDADMLSEIDINTALDMLMKQGQWNQCLDKAKNINTNLLHKYM 1550 (1637)
Q Consensus 1503 ~l~~~~~~~~~~~~d~~~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~ 1550 (1637)
.+++.++ +.++|+++.+.+.|++|+++|++.+...+..-+
T Consensus 463 LYkkn~r--------w~qsi~l~KkDklykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 463 LFKGNNR--------WKQSVELCKKDSLYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp HHHTTCH--------HHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHH
T ss_pred HHHhccc--------HHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHH
Confidence 7787776 889999999999999999999998877544433
No 138
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=6.6e-20 Score=222.20 Aligned_cols=355 Identities=17% Similarity=0.176 Sum_probs=215.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
+..+...|++++|+..|.+.- .. .|.+...+..++..+...|++++|..+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~---------~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 57 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLW---------RQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFST---------------- 57 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH---------HH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHH---------Hh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH----------------
Confidence 455677888888888886651 11 25667777777777766666666655443
Q ss_pred ChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHH
Q psy12802 941 VYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHV 1020 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~ 1020 (1637)
++++ .. |.....+..+|..+...|++++|+.+|.++... .|+ ....+
T Consensus 58 ---~a~~----~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~ 104 (388)
T 1w3b_A 58 ---LAIK----QN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL------------------------KPD-FIDGY 104 (388)
T ss_dssp ---HHHH----HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------CTT-CHHHH
T ss_pred ---HHHh----cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------------------------Ccc-hHHHH
Confidence 2222 13 445557788999999999999999998775322 455 67788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhccCH--------HHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCC
Q psy12802 1021 KTLAQHFKTVKDYKTAEKIYSHCDMH--------EQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENK 1091 (1637)
Q Consensus 1021 ~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~ 1091 (1637)
..+|..+...|++++|++.|.++... ..+..+|.+.|++++|++.+++... .|....++..+|..+..+|+
T Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999999999888876432 1233444444444444444443221 13334445555555555555
Q ss_pred HHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHH
Q psy12802 1092 FKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYR 1171 (1637)
Q Consensus 1092 ~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~ 1171 (1637)
+++|+..|.++ ++ ..| ....++..+|..+...|++++|+..|.++
T Consensus 185 ~~~A~~~~~~a-------------------l~----~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~a----------- 229 (388)
T 1w3b_A 185 IWLAIHHFEKA-------------------VT----LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRA----------- 229 (388)
T ss_dssp HHHHHHHHHHH-------------------HH----HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHH-----------
T ss_pred HHHHHHHHHHH-------------------Hh----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------
Confidence 55554443331 00 111 22345555555555555555555555554
Q ss_pred hcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHH
Q psy12802 1172 SLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHY 1251 (1637)
Q Consensus 1172 ~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 1251 (1637)
+...+.+..++..++..+...|++++|++.|.++ ....|..++++.
T Consensus 230 ----------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------l~~~p~~~~~~~ 275 (388)
T 1w3b_A 230 ----------LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA------------------------IELQPHFPDAYC 275 (388)
T ss_dssp ----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHTCSSCHHHHH
T ss_pred ----------HhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HhhCCCCHHHHH
Confidence 2222333444555555555555555555555433 112455677788
Q ss_pred HHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1252 KYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1252 ~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
.+|..+...|++++|+..|.++ + +..|. .+.++..++..+...|++++|+..|.++
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~a------l-----------------~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTA------L-----------------RLCPT-HADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHH------H-----------------HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------H-----------------hhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888777776 2 22344 3566777777777777777776665433
Q ss_pred CChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcc
Q psy12802 1332 HKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVD 1411 (1637)
Q Consensus 1332 ~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 1411 (1637)
+ +..| ....++..+|..+.+.|++++|+..|.++....
T Consensus 332 -------------------l----~~~p-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 332 -------------------L----EVFP-------------------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp -------------------T----TSCT-------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred -------------------H----hcCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 1122 223358889999999999999999998776443
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=1.3e-19 Score=226.30 Aligned_cols=279 Identities=8% Similarity=0.016 Sum_probs=208.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEc--CCCC------cccceEEEEECC----CCCeEEEEE-CCCeEEEEEcCCCCC
Q psy12802 14 LQDDVFNLDIVRLRSEGNVAGIWAWRG--QNGR------KSYVVKGLAFSP----DSTKLAVAQ-SDNIIFIYKLGDDWG 80 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~~d~~i~vwd~--~~~~------h~~~V~~~~~sp----d~~~la~~~-~d~~i~iw~~~~~~~ 80 (1637)
+..++|||||++|++++.+++|++||+ .+++ +...+.+++||| ||++|++++ .+++|.+||..+...
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 778999999999999999999999999 6665 355689999999 999999887 489999999887421
Q ss_pred CceeEeecc-------CC-CCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce-e-eecccCCcEEEEEEecCCCeEE
Q psy12802 81 DKKVICNKF-------IQ-QCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT-Q-TLYASNSFVVALCLNVRGAGVL 148 (1637)
Q Consensus 81 ~~~~~~~~~-------~~-~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~-~-~~~~~~~~v~~l~~s~~g~~l~ 148 (1637)
. +.+.... .| ...+.++.++|++. +++...+++|.+||..+++. . ....+...+.++.|+|+|++++
T Consensus 261 ~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 261 K-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp E-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred c-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 1 1111100 02 33799999999888 66778899999999988765 2 2335677788999999999876
Q ss_pred EEe-CCCcEEEEEecCCCCccccccccccc----CCCCcEEEEecCC---eEEEEe-cCCeEEEEe-CC-------Ccee
Q psy12802 149 SGH-ADGSIVRYYVTEDASNFDQQQGRVVQ----HPVPPYALSWPAG---YILAAG-SDRIVTIYE-SD-------GRVH 211 (1637)
Q Consensus 149 s~~-~dg~i~iwd~~~~~~g~~~~~~~~~~----~~~~v~~~~~~~~---~l~~~~-~d~~i~iwd-~~-------~~~~ 211 (1637)
+++ .+++|.+||..+. +++..+.. |.+....+ ++|+ .++++. .|++|.+|| .+ ++++
T Consensus 340 va~~~~~~v~v~D~~tg-----~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDR-----RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp EEEGGGTEEEEEETTTT-----EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEecCCCeEEEEECCCC-----eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE
Confidence 655 5899999999873 55555543 55544444 3553 445554 589999999 45 7899
Q ss_pred EEeeccCCCCCCccEEEEEECCCCCEEEEEe-------cCc-EEEEEeCCCCCccccCCCc----ccCCCcceeEEEEcC
Q psy12802 212 RIFDYTAPHYKEREFTVACSSPSGQAVVVGS-------YDN-IKLFAWSPSKSVWEEQPNK----TIPNLYTISALSWKR 279 (1637)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-------~d~-i~i~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~sp 279 (1637)
+++.. +...+..++++|+|+.|++++ .++ |.+||..+....+...... ...+...+..+.|+|
T Consensus 414 ~~l~~-----~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 414 AELQG-----QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp EEEEC-----SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred EEEEc-----CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 99985 344678899999999999987 133 9999999876542211000 113356899999999
Q ss_pred CCCEEEEEe-----cCCcEEEEEcccccee
Q psy12802 280 DGSRIACGG-----LCGSVELFESVLKRTI 304 (1637)
Q Consensus 280 dg~~l~~~~-----~dg~v~iwd~~~~~~~ 304 (1637)
||+.+.++. .++.|.+||..+++.+
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 999988763 4799999999887654
No 140
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=3.6e-19 Score=215.65 Aligned_cols=374 Identities=17% Similarity=0.160 Sum_probs=227.5
Q ss_pred HHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhhcccCCCCCCchHHHHHHHHHHhcCHHHHHHHHHhcCcHH
Q psy12802 735 LAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIH 814 (1637)
Q Consensus 735 l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~A~~~~~~~~~~~ 814 (1637)
+|..+...++++.|..+|...-.. .|+....+..++.++...|++++|...+ .
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~---------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~------~ 57 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ---------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFS------T 57 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH------H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH------H
Confidence 566677778888887766443221 4555566677777777777777777765 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCC
Q psy12802 815 KAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEP 894 (1637)
Q Consensus 815 ~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~ 894 (1637)
.++.. . +.....+... |.++...|++++|+.+|.++-..
T Consensus 58 ~a~~~-----------------~---p~~~~~~~~l----------g~~~~~~g~~~~A~~~~~~al~~----------- 96 (388)
T 1w3b_A 58 LAIKQ-----------------N---PLLAEAYSNL----------GNVYKERGQLQEAIEHYRHALRL----------- 96 (388)
T ss_dssp HHHHH-----------------C---TTCHHHHHHH----------HHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred HHHhc-----------------C---CCchHHHHHH----------HHHHHHCCCHHHHHHHHHHHHHc-----------
Confidence 22211 1 1112222222 67788889999999998887211
Q ss_pred CCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccH
Q psy12802 895 YLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQY 974 (1637)
Q Consensus 895 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~ 974 (1637)
.|.+...+..++..+...|++++|...|++ ++++ . |+.......+|..+...|++
T Consensus 97 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------al~~----~-p~~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 97 -KPDFIDGYINLAAALVAAGDMEGAVQAYVS-------------------ALQY----N-PDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp -CTTCHHHHHHHHHHHHHHSCSSHHHHHHHH-------------------HHHH----C-TTCTHHHHHHHHHHHTTSCH
T ss_pred -CcchHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHh----C-CCcHHHHHHHHHHHHHccCH
Confidence 145667777777777666666666555432 2221 3 34445667889999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCH--------
Q psy12802 975 NAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMH-------- 1046 (1637)
Q Consensus 975 ~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 1046 (1637)
++|+.+|.++... .|+ ...++..+|..|...|++++|+..|+++...
T Consensus 152 ~~A~~~~~~al~~------------------------~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 206 (388)
T 1w3b_A 152 EEAKACYLKAIET------------------------QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206 (388)
T ss_dssp HHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHh------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999998775321 444 5667888888888888888888888876432
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHH
Q psy12802 1047 EQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLV 1125 (1637)
Q Consensus 1047 ~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~ 1125 (1637)
..+..++...|++++|+..+++... .|....++..+|..+..+|++++|+..|.++.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------- 264 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI---------------------- 264 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Confidence 1233334444444444444333211 13334445555555555555555555443310
Q ss_pred HhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCc
Q psy12802 1126 RNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGG 1205 (1637)
Q Consensus 1126 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~ 1205 (1637)
+ .. +....++..+|..+...|++++|+.+|.++ +...+.+..++..++..+.+.|++
T Consensus 265 ~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------------l~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 265 E-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA---------------------LRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp H-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred h-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HhhCcccHHHHHHHHHHHHHcCCH
Confidence 0 11 222455666666666666666666666665 222233444555666666665555
Q ss_pred chHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHh
Q psy12802 1206 DSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIH 1285 (1637)
Q Consensus 1206 ~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~ 1285 (1637)
++|++.|.++ ....|..+..+..+|..|...|++++|+..|.++
T Consensus 322 ~~A~~~~~~a------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------ 365 (388)
T 1w3b_A 322 EEAVRLYRKA------------------------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA------------ 365 (388)
T ss_dssp HHHHHHHHHH------------------------TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH------------
T ss_pred HHHHHHHHHH------------------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Confidence 5555555443 1124667888999999999999999999998887
Q ss_pred cCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcC
Q psy12802 1286 NQDWENAERIANEHDPTSIGDILLNQSKCEFENE 1319 (1637)
Q Consensus 1286 ~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~ 1319 (1637)
.+..|. .+.++..++..+.+.|
T Consensus 366 -----------~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 366 -----------IRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -----------HTTCTT-CHHHHHHHHHHHHHTC
T ss_pred -----------HhhCCC-CHHHHHhHHHHHHHcc
Confidence 233454 5678888888776655
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=9.6e-20 Score=241.72 Aligned_cols=278 Identities=11% Similarity=0.132 Sum_probs=192.9
Q ss_pred ccceEEEEECCCCCeEEEEEC-CC-----eEEEEEcCCCCCCceeEeeccCCC----------------------CCEEE
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQS-DN-----IIFIYKLGDDWGDKKVICNKFIQQ----------------------CPVTT 97 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~----------------------~~v~~ 97 (1637)
...|.+++|||||++|++++. |+ .|++||+.++ ....+.....+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 557999999999999999998 88 8999999875 122222211122 23789
Q ss_pred EEEcCCCC-EEEEeCCCcEEEEEcCCC---ceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccc
Q psy12802 98 MVWLADGP-IIYGQSDGKIKAAHVKAN---KTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQG 173 (1637)
Q Consensus 98 v~~s~~~~-l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~ 173 (1637)
++|||||+ +++++. +.|++||+.++ ....+..|...+.+++|||||+.|++++. +.|++||+.+. ....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g-----~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG-----RQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT-----EEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC-----CEEE
Confidence 99999999 777775 99999999999 77788888899999999999999999875 68999999863 3322
Q ss_pred ccccCCC----------------CcEEEEecCC--eEEEEecCC---------------------------------eEE
Q psy12802 174 RVVQHPV----------------PPYALSWPAG--YILAAGSDR---------------------------------IVT 202 (1637)
Q Consensus 174 ~~~~~~~----------------~v~~~~~~~~--~l~~~~~d~---------------------------------~i~ 202 (1637)
....+.. .+.++.|||+ .|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 2222222 2478999995 688877665 788
Q ss_pred EEe-CC-CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEec-----Cc-EEEEEeCCCCCccccCCCcccCCCc---c
Q psy12802 203 IYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-----DN-IKLFAWSPSKSVWEEQPNKTIPNLY---T 271 (1637)
Q Consensus 203 iwd-~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-----d~-i~i~~~~~~~~~~~~~~~~~~~~~~---~ 271 (1637)
+|| .+ ++... +.... .+...+..++| |||+.|++++. +. |++||..++.... ........ .
T Consensus 267 ~~d~~~~~~~~~-~~~~~--~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~----~~~~~~~~~~~~ 338 (741)
T 2ecf_A 267 VISPAEQAQTQW-IDLGK--EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV----LAHETSPTWVPL 338 (741)
T ss_dssp EECSSTTCCCEE-ECCCS--CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE----EEEEECSSCCCC
T ss_pred EEECCCCCceEE-ecCCC--CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE----EEEcCCCCcCCc
Confidence 899 44 55433 32211 25668999999 99999998764 22 8888877654321 00001111 4
Q ss_pred eeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEE-EEec
Q psy12802 272 ISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDV-AIMG 350 (1637)
Q Consensus 272 i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v-~~s~ 350 (1637)
+.++.|+|||+++++++.+|.+.+|.+.... . ...+.. ....+..+ .|+|
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---------------~--~~~l~~------------~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKG---------------K--AAALTH------------GNWSVDELLAVDE 389 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSS---------------C--EEESCC------------SSSCEEEEEEEET
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCC---------------C--eeeeee------------cceEEEeEeEEeC
Confidence 5688999999999999999988888764110 0 011111 12356676 5999
Q ss_pred CceEEEE-eCC-C--cEEEeecc
Q psy12802 351 NDRYLVA-RTP-D--TLLLGDLH 369 (1637)
Q Consensus 351 ~~~~lv~-~~~-~--~i~i~d~~ 369 (1637)
+++.++. ..+ + .+.||++.
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEEE
Confidence 9875544 333 3 78888764
No 142
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=3.6e-19 Score=215.89 Aligned_cols=236 Identities=11% Similarity=0.092 Sum_probs=181.2
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCC---eEEEEEcCCCCCCceeEee
Q psy12802 23 IVRLRSEGNV------AGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDN---IIFIYKLGDDWGDKKVICN 87 (1637)
Q Consensus 23 g~~la~~~~d------~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~---~i~iw~~~~~~~~~~~~~~ 87 (1637)
+..+++++.+ +.|++||...+. |...|.+++|||||++|++++.++ .|++||+.++ +.. .
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg----~~~-~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG----AVR-Q 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEE-E
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC----cEE-E
Confidence 6677776654 789999998543 678999999999999999999875 9999999875 222 2
Q ss_pred ccCCCCCEEEEEEcCCCC-EE-EEeCCCc--EEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeC-CC--cEEEEE
Q psy12802 88 KFIQQCPVTTMVWLADGP-II-YGQSDGK--IKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHA-DG--SIVRYY 160 (1637)
Q Consensus 88 ~~~~~~~v~~v~~s~~~~-l~-~~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~-dg--~i~iwd 160 (1637)
...|...+.+++|+|||+ ++ +++.++. |++||+.+++...+..|...+.+++|+|||+.|++++. ++ .|.+||
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 345778999999999999 77 5655554 99999999998888899999999999999999998886 45 566677
Q ss_pred ecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecC---CeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 161 VTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 161 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d---~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
+.+. ....+..+...+.+++|+|+ .|++++.+ ..|.+|| .+++. ..+.. +. .+.+++|+|+
T Consensus 298 ~~~~------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~-----~~-~~~~~~~spd 364 (415)
T 2hqs_A 298 INGG------APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSS-----TF-LDETPSLAPN 364 (415)
T ss_dssp TTSS------CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCC-----SS-SCEEEEECTT
T ss_pred CCCC------CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecC-----CC-CcCCeEEcCC
Confidence 7652 23445567778899999984 67776654 5899999 45554 44442 22 7899999999
Q ss_pred CCEEEEEecCc----EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCC
Q psy12802 235 GQAVVVGSYDN----IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS 282 (1637)
Q Consensus 235 g~~l~~~~~d~----i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 282 (1637)
|+.|++++.++ |++|+++.+.. .....+.+.|.+++|+|.-.
T Consensus 365 g~~l~~~s~~~~~~~l~~~d~~g~~~------~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 365 GTMVIYSSSQGMGSVLNLVSTDGRFK------ARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp SSEEEEEEEETTEEEEEEEETTSCCE------EECCCSSSEEEEEEECCCCC
T ss_pred CCEEEEEEcCCCccEEEEEECCCCcE------EEeeCCCCCCcCCccccccc
Confidence 99998887665 67777653321 23345668999999999643
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=4.1e-20 Score=244.61 Aligned_cols=273 Identities=10% Similarity=0.079 Sum_probs=188.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------ccc---ceEEEEECCCCCeEEEEECC---------CeEEE
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSY---VVKGLAFSPDSTKLAVAQSD---------NIIFI 72 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~---~V~~~~~spd~~~la~~~~d---------~~i~i 72 (1637)
..+.+++|||||+++++ +.|++|++||..+++ |.. .|.+++|||||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678899999997766 679999999998876 222 49999999999999999864 78889
Q ss_pred EEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeee-cccCCc----------------
Q psy12802 73 YKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTL-YASNSF---------------- 134 (1637)
Q Consensus 73 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~---------------- 134 (1637)
||+.++. .+.+.....|...+.+++|||||+ +++++. +.|++||+.+++...+ ..+...
T Consensus 96 ~d~~~~~--~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 96 SKIPHGD--PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp EESSSCC--CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred EECCCCc--eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 9998752 223333334556689999999999 888775 7999999999887433 333332
Q ss_pred --EEEEEEecCCCeEEEEeCCC----------------------------------cEEEEEecCCCCccccccccccc-
Q psy12802 135 --VVALCLNVRGAGVLSGHADG----------------------------------SIVRYYVTEDASNFDQQQGRVVQ- 177 (1637)
Q Consensus 135 --v~~l~~s~~g~~l~s~~~dg----------------------------------~i~iwd~~~~~~g~~~~~~~~~~- 177 (1637)
+.+++|||||+.|++++.|+ +|++||+.+. .....+..
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-----~~~~~l~~~ 247 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-----THDLEMMPP 247 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-----CCCEECCCC
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-----ceeEEeeCC
Confidence 37899999999999987653 7899998763 32333433
Q ss_pred -----CCCCcEEEEecCC--eEEEEec----CCeEEEEe-CCCceeEEeeccCCCCCCccE----EEEEECCCCCEEEEE
Q psy12802 178 -----HPVPPYALSWPAG--YILAAGS----DRIVTIYE-SDGRVHRIFDYTAPHYKEREF----TVACSSPSGQAVVVG 241 (1637)
Q Consensus 178 -----~~~~v~~~~~~~~--~l~~~~~----d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i----~~~~~sp~g~~l~~~ 241 (1637)
+...+.+++|+|+ .+++.+. +..|.+|| .+|+....+... +...+ ..++|||||+.|+..
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE----SEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE----CSSCCCCCCCCCEECTTSCSEEEE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec----cCCEEeccCCCceEcCCCCeEEEE
Confidence 3667899999995 4444433 35799999 677766655432 11222 378999999977754
Q ss_pred --ecCc-----EEEEEeC--CCCCccccCCCcccCCCcceeE-EEEcCCCCEEEEEecC---CcEEEEEcc
Q psy12802 242 --SYDN-----IKLFAWS--PSKSVWEEQPNKTIPNLYTISA-LSWKRDGSRIACGGLC---GSVELFESV 299 (1637)
Q Consensus 242 --~~d~-----i~i~~~~--~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~l~~~~~d---g~v~iwd~~ 299 (1637)
..++ .++|.++ ...... .......+...+.. ++|||||+.|+..+.+ +.+++|++.
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSND--NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSC--CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EecccCCCcceeEEEEEeccCCCCcc--ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 3332 3455444 221100 00111122334444 6999999998766555 789999985
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=2.4e-19 Score=236.19 Aligned_cols=312 Identities=9% Similarity=0.068 Sum_probs=208.4
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------c-----------------cceEEEEECCCCCeEEEEE
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK--------S-----------------YVVKGLAFSPDSTKLAVAQ 65 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h--------~-----------------~~V~~~~~spd~~~la~~~ 65 (1637)
...+..+.|+ |..+++++.++ | +||..+++. . ..|.+++|||| +.++.+.
T Consensus 25 ~~~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~ 99 (706)
T 2z3z_A 25 PEYVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT 99 (706)
T ss_dssp ---CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred cccCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence 3445667888 66777777777 8 999988764 1 46999999999 7776654
Q ss_pred CCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC-----Cceeee-cccCCc----
Q psy12802 66 SDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA-----NKTQTL-YASNSF---- 134 (1637)
Q Consensus 66 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~-----~~~~~~-~~~~~~---- 134 (1637)
++.|++||+.++ +.. ....+...+.+++|||||+ +++ +.++.|++||+.+ ++...+ ..+...
T Consensus 100 -~~~i~~~d~~~~----~~~-~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 100 -QGGLVGFDMLAR----KVT-YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp -TTEEEEEETTTT----EEE-EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred -CCEEEEEECCCC----ceE-EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 699999999874 222 2234567788999999999 777 4689999999998 776433 333332
Q ss_pred ----------EEEEEEecCCCeEEEEe---------------------------------CCCcEEEEEecCCCCccccc
Q psy12802 135 ----------VVALCLNVRGAGVLSGH---------------------------------ADGSIVRYYVTEDASNFDQQ 171 (1637)
Q Consensus 135 ----------v~~l~~s~~g~~l~s~~---------------------------------~dg~i~iwd~~~~~~g~~~~ 171 (1637)
+.++.|||||+.|++++ .++.|++||+.+... ..
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---~~ 249 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---VY 249 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---EE
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---Ee
Confidence 48899999999999987 446799999986321 11
Q ss_pred ccccccCCCCcEEEEecCC--eEEEEecCC-----eEEEEe-CCCceeEEeeccCCCCCCccEEEEEECC--CCCEEEEE
Q psy12802 172 QGRVVQHPVPPYALSWPAG--YILAAGSDR-----IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVG 241 (1637)
Q Consensus 172 ~~~~~~~~~~v~~~~~~~~--~l~~~~~d~-----~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~ 241 (1637)
+.....|...+.+++|+|+ .+++++.++ .|.+|| .+|+....+...........+..++|+| ||++++++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 2222256778999999995 678777775 999999 6663444443211101111246789999 99999999
Q ss_pred ecCc-EEEEEeCCCCCccccCCCcccCCCcceeE-EEEcCCCCEEEEEecC-C----cEEEEEccccceeeeCcEEEEEe
Q psy12802 242 SYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISA-LSWKRDGSRIACGGLC-G----SVELFESVLKRTIWKGKFEMIYV 314 (1637)
Q Consensus 242 ~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~l~~~~~d-g----~v~iwd~~~~~~~~~~~~~~~~~ 314 (1637)
+.++ +++|.++...... .....+...+.+ +.|+|||+.|+.++.+ + .|..||..+++.
T Consensus 330 ~~~g~~~l~~~~~~~~~~----~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~----------- 394 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLI----RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT----------- 394 (706)
T ss_dssp CTTSSCEEEEEETTSCEE----EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-----------
T ss_pred ccCCccEEEEEECCCCEE----EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-----------
Confidence 8888 8999887432211 111234456666 7999999987665544 3 455555543321
Q ss_pred cCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-eCC----CcEEEeeccccc
Q psy12802 315 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTP----DTLLLGDLHRNL 372 (1637)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~----~~i~i~d~~~~~ 372 (1637)
..+. ....+.++.|||++++++. .++ +.+.+||+.+++
T Consensus 395 ------------------~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 395 ------------------KDLT--PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ------------------EESC--CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ------------------eecc--CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 0111 1225788999999887765 232 469999998776
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=1.6e-18 Score=228.32 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=197.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC-----CCC
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD-----DWG 80 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~-----~~~ 80 (1637)
..|++++|||| +.++.+. ++.|++||+.+++ +...+.+++|||||++|+++ .++.|++|++.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~- 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR- 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC-
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC-
Confidence 56899999999 6666664 5899999998765 45678899999999999985 689999999986 41
Q ss_pred CceeEeeccCCCCC--------------EEEEEEcCCCC-EEEEe---------------------------------CC
Q psy12802 81 DKKVICNKFIQQCP--------------VTTMVWLADGP-IIYGQ---------------------------------SD 112 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~--------------v~~v~~s~~~~-l~~~~---------------------------------~d 112 (1637)
.......+... +.++.|||||+ |++++ .+
T Consensus 158 ---~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 158 ---AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp ---CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred ---cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 11111122222 48899999999 88876 45
Q ss_pred CcEEEEEcCCCceeeec---ccCCcEEEEEEecCCCeEEEEeCCC-----cEEEEEecCCCCcccccccccc--cCC---
Q psy12802 113 GKIKAAHVKANKTQTLY---ASNSFVVALCLNVRGAGVLSGHADG-----SIVRYYVTEDASNFDQQQGRVV--QHP--- 179 (1637)
Q Consensus 113 ~~v~vwd~~~~~~~~~~---~~~~~v~~l~~s~~g~~l~s~~~dg-----~i~iwd~~~~~~g~~~~~~~~~--~~~--- 179 (1637)
..|++||+.+++...+. .|...+.+++|+|||+.|++++.++ .|++||+.+. .....+. .+.
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g-----~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG-----RFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC-----CEEEEEEEEECSSCC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC-----ceeeEEEEccCCCeE
Confidence 78999999999874333 5677899999999999999988775 8999998864 1222222 222
Q ss_pred CCcEEEEecC--C--eEEEEecCCeEEEEe--CCCceeEEeeccCCCCCCccEEE-EEECCCCCEEEEEecCc----EEE
Q psy12802 180 VPPYALSWPA--G--YILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTV-ACSSPSGQAVVVGSYDN----IKL 248 (1637)
Q Consensus 180 ~~v~~~~~~~--~--~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~g~~l~~~~~d~----i~i 248 (1637)
..+.++.|+| + .+++++.|+.+++|+ .+++.+..+. .+...+.. ++|+|+|+.|++++.+. +.|
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-----~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-----KGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-----CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-----CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 2346789988 6 667777889899987 5777777776 34456766 79999999887665542 566
Q ss_pred EEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecC----CcEEEEEccccc
Q psy12802 249 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKR 302 (1637)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d----g~v~iwd~~~~~ 302 (1637)
|.++..... ...+.+...+.+++|||||++++..+.+ +.|++||..+++
T Consensus 385 ~~~d~~~~~-----~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 385 YCIDIKGGK-----TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEETTCCC-----CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEcCCCC-----ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 666543332 2333455678999999999988876544 459999987654
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=1.6e-18 Score=204.78 Aligned_cols=274 Identities=10% Similarity=0.097 Sum_probs=185.7
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEEC-CCeEEEEEcCCCCCCceeEee
Q psy12802 17 DVFNLDIVR-LRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQS-DNIIFIYKLGDDWGDKKVICN 87 (1637)
Q Consensus 17 ~~~spdg~~-la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~-d~~i~iw~~~~~~~~~~~~~~ 87 (1637)
..|++++.+ +++.+.++.|++||..+++ +...+ +++|+|||+++++++. ++.|.+||+.++.. ....
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP---KVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC---EEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce---eEEe
Confidence 457776665 6667778999999999877 23455 9999999998776665 88999999987521 1323
Q ss_pred ccCCCCCEEEEEEcCCCC-EEEEeCCC---cEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEE-eCCCc-EEEEEe
Q psy12802 88 KFIQQCPVTTMVWLADGP-IIYGQSDG---KIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG-HADGS-IVRYYV 161 (1637)
Q Consensus 88 ~~~~~~~v~~v~~s~~~~-l~~~~~d~---~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~-i~iwd~ 161 (1637)
...+..++.+++|+|+|+ ++++..++ .|.+||+.+++......+...+.+++|+|||+.++++ ..++. |.+|++
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 334555555599999999 77544442 8999999999884444445567999999999866555 55688 999999
Q ss_pred cCCCCcccccccccccCCCCcEEEEecCC--eEEE-EecCCeEEEEe-CCCce---eEEeeccCCCCCCccEEEEEECCC
Q psy12802 162 TEDASNFDQQQGRVVQHPVPPYALSWPAG--YILA-AGSDRIVTIYE-SDGRV---HRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 162 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~-~~~d~~i~iwd-~~~~~---~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
...+.-. ............+..++|+|+ .+++ +..++.|.+|| .+++. +..+.. ...+..++|+||
T Consensus 159 ~~~g~~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~~~~spd 231 (331)
T 3u4y_A 159 DADGVLF-DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT------NNLPGTIVVSRD 231 (331)
T ss_dssp CTTCCEE-EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC------SSCCCCEEECTT
T ss_pred CCCCcEe-ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC------CCCCceEEECCC
Confidence 8542100 000122244566899999984 3544 45689999999 67777 666653 245678999999
Q ss_pred CCEEEEEec-Cc-EEEEEeCCCCCccccCCCcc----cCCCcceeEEEEcCCCCEEEEEe-cCCcEEEEEcccc
Q psy12802 235 GQAVVVGSY-DN-IKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLK 301 (1637)
Q Consensus 235 g~~l~~~~~-d~-i~i~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~spdg~~l~~~~-~dg~v~iwd~~~~ 301 (1637)
|+++++++. ++ |.+||..++........... .........++|+|||++|++++ .++.|.+||+...
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 998877655 33 99999876543110000000 01112235689999999886555 5679999999644
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=2e-18 Score=205.31 Aligned_cols=271 Identities=15% Similarity=0.206 Sum_probs=183.6
Q ss_pred CEEEEEeCCCeEEEEEcC-CCC--------cccceEEEEECCCCCeEEEEECC-CeEEEEEcCCCCCCceeEeeccCCCC
Q psy12802 24 VRLRSEGNVAGIWAWRGQ-NGR--------KSYVVKGLAFSPDSTKLAVAQSD-NIIFIYKLGDDWGDKKVICNKFIQQC 93 (1637)
Q Consensus 24 ~~la~~~~d~~i~vwd~~-~~~--------h~~~V~~~~~spd~~~la~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~ 93 (1637)
..+++++.++.|++|++. ++. +...+.+++|+|+|++|++++.+ +.|.+|++....+..+.+..... ..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CC
Confidence 344455779999999985 332 45678899999999999988876 99999999732222233333222 33
Q ss_pred CEEEEEEcCCCC-EEEEe-CCCcEEEEEcCCC---ceeeecccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCCc
Q psy12802 94 PVTTMVWLADGP-IIYGQ-SDGKIKAAHVKAN---KTQTLYASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDASN 167 (1637)
Q Consensus 94 ~v~~v~~s~~~~-l~~~~-~d~~v~vwd~~~~---~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~g 167 (1637)
.+.+++|+|+|+ +++++ .++.|.+||+..+ +..........+.+++|+|+|+.+++++ .++.|.+||+...+.-
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 788999999999 66655 5889999999533 3323333445688999999999888887 7999999999863210
Q ss_pred cccccc--ccc-cCCCCcEEEEecCC--eEEE-EecCCeEEEEeC---CCce--eEEeeccC-CCCCCccEEEEEECCCC
Q psy12802 168 FDQQQG--RVV-QHPVPPYALSWPAG--YILA-AGSDRIVTIYES---DGRV--HRIFDYTA-PHYKEREFTVACSSPSG 235 (1637)
Q Consensus 168 ~~~~~~--~~~-~~~~~v~~~~~~~~--~l~~-~~~d~~i~iwd~---~~~~--~~~~~~~~-~~~~~~~i~~~~~sp~g 235 (1637)
.... ... .....+..++|+|+ .+++ +..++.|.+||. ++.. ...+.... .......+..++|+|+|
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 165 --VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp --EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred --eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 1111 222 23457889999984 4544 447899999993 2332 22222111 10123467789999999
Q ss_pred CEEEEEe-cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEe-cCCcEEEEEcc
Q psy12802 236 QAVVVGS-YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV 299 (1637)
Q Consensus 236 ~~l~~~~-~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~v~iwd~~ 299 (1637)
+.++++. .++ |.+|++......+.. .........+.+++|+|+|++|++++ .++.|.+|++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSK--EGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEE--EEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEE--eeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9887555 566 999999843221111 11222223488999999999888887 68999999653
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=9.8e-19 Score=203.00 Aligned_cols=245 Identities=15% Similarity=0.106 Sum_probs=182.5
Q ss_pred EeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC-CCCCceeEeeccCC-CCCEEEEEE
Q psy12802 29 EGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD-DWGDKKVICNKFIQ-QCPVTTMVW 100 (1637)
Q Consensus 29 ~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~-~~~v~~v~~ 100 (1637)
++.+++|++||+.+++ |...|.+++|||||++|++++ ++.|++||+.+ + +.......+ ...|.+++|
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccceEE
Confidence 4568899999998776 677899999999999999876 88999999987 4 122222233 467889999
Q ss_pred cCCCC-EEEEe--CCCc--EEEEEcCCCceeeecccCCcEEEEEEecCCCeEE-EEeCCCcEEEEEecCCCCcccccccc
Q psy12802 101 LADGP-IIYGQ--SDGK--IKAAHVKANKTQTLYASNSFVVALCLNVRGAGVL-SGHADGSIVRYYVTEDASNFDQQQGR 174 (1637)
Q Consensus 101 s~~~~-l~~~~--~d~~--v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s~~~dg~i~iwd~~~~~~g~~~~~~~ 174 (1637)
+|+|+ +++++ .++. |..|+..++....+..+. .+.+++|+|+|+.|+ +++.++.+.+|+++... .....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----~~~~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----GVETR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----CCEEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC----CcceE
Confidence 99999 88877 3344 555555666655555444 489999999999877 77789999999986532 34456
Q ss_pred cccCCCCcEEEEecCC--eEEEEe-cCCeEEEEe--CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC-----
Q psy12802 175 VVQHPVPPYALSWPAG--YILAAG-SDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----- 244 (1637)
Q Consensus 175 ~~~~~~~v~~~~~~~~--~l~~~~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----- 244 (1637)
+..+...+.++.|+|+ .+++++ .++.+.+|+ ..+..+..+. .+...+..++|+|+|+.|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-----DSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-----CCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-----cCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 6678889999999984 566555 588999998 4666666665 345678999999999999988775
Q ss_pred ------c-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCC
Q psy12802 245 ------N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG 291 (1637)
Q Consensus 245 ------~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg 291 (1637)
. |.+|++....... ......+...+.+++|+|||+.|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVET---LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEE---EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCCCCcee---eeccCCCCcccccceECCCCCEEEEEEecc
Confidence 3 8888877654310 011124556788999999999998877653
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=7.3e-19 Score=232.64 Aligned_cols=238 Identities=9% Similarity=0.010 Sum_probs=163.8
Q ss_pred cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCC---CEEEEEEcCCCC-EEEEeCC--------
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC---PVTTMVWLADGP-IIYGQSD-------- 112 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~---~v~~v~~s~~~~-l~~~~~d-------- 112 (1637)
....+.+++|||||+++++ +.||+|++||+.++ +.......|.. .|.+++|||||+ +++++.+
T Consensus 15 ~~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g----~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 15 FKIHDPEAKWISDTEFIYR-EQKGTVRLWNVETN----TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp TCCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC----CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred CcccccccEEcCCCcEEEE-eCCCCEEEEECCCC----cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 3445788999999998776 78999999999875 22222233443 499999999999 8888764
Q ss_pred -CcEEEEEcCCCceeeec---ccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCC--------
Q psy12802 113 -GKIKAAHVKANKTQTLY---ASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPV-------- 180 (1637)
Q Consensus 113 -~~v~vwd~~~~~~~~~~---~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~-------- 180 (1637)
+.|++||+.+++...+. +|...+.+++|||||+.|++++. +.|++||+.+. ........+..
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-----~~~~~~~~~~~~~~~~g~~ 163 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-----QAIRVVSTGKEGVIYNGLS 163 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-----CCEEEECCCBTTTEEEEEC
T ss_pred eeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-----ceEEEecCCCCCceECccc
Confidence 78889999999874444 34445889999999999999887 79999998863 33332333333
Q ss_pred ----------CcEEEEecCC--eEEEEecCC----------------------------------eEEEEe-CCCceeEE
Q psy12802 181 ----------PPYALSWPAG--YILAAGSDR----------------------------------IVTIYE-SDGRVHRI 213 (1637)
Q Consensus 181 ----------~v~~~~~~~~--~l~~~~~d~----------------------------------~i~iwd-~~~~~~~~ 213 (1637)
.+.++.|||+ .|++++.++ .|.+|| .+++....
T Consensus 164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (723)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred ceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE
Confidence 2378999995 677776543 789999 55554455
Q ss_pred eeccCC-CCCCccEEEEEECCCCCEEEEEecC----c-EEEEEeCCCCCccccCCCcccCCCcce----eEEEEcCCCCE
Q psy12802 214 FDYTAP-HYKEREFTVACSSPSGQAVVVGSYD----N-IKLFAWSPSKSVWEEQPNKTIPNLYTI----SALSWKRDGSR 283 (1637)
Q Consensus 214 ~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~d----~-i~i~~~~~~~~~~~~~~~~~~~~~~~i----~~l~~spdg~~ 283 (1637)
+..+.. ..+...+..++|||||+.+++.+.. . |++||..++.... .....+...+ ..+.|||||+.
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~----~~~~~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK----KHEDESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE----EEEEECSSCCCCCCCCCEECTTSCS
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE----EEEeccCCEEeccCCCceEcCCCCe
Confidence 553210 0125578999999999988776543 2 8888877654321 0111112222 37899999997
Q ss_pred EEE--EecCC------cEEEEE
Q psy12802 284 IAC--GGLCG------SVELFE 297 (1637)
Q Consensus 284 l~~--~~~dg------~v~iwd 297 (1637)
|+. +..+| .|.+||
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEEEecccCCCcceeEEEEEe
Confidence 775 45666 455666
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=1.3e-17 Score=199.06 Aligned_cols=258 Identities=10% Similarity=0.058 Sum_probs=192.9
Q ss_pred CceeEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCc------ccceEEEEECCCCCeEEEE-ECCCeEEEEEcCC
Q psy12802 12 NVLQDDVFNLDIVRLRSEGN-------VAGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVA-QSDNIIFIYKLGD 77 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~-------d~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~-~~d~~i~iw~~~~ 77 (1637)
..+..++|||||+++++++. ++.|++||..+++. ...+.+++|+|||++++++ ..++.|.+||..+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 45678999999998888764 56899999988762 4457889999999977655 4579999999987
Q ss_pred CCCCceeEeeccCCCC---------CEEEEEEcCCCC-EEEEe--CCCcEEEEEcCCCce-eeecccCCcEEEEEEecCC
Q psy12802 78 DWGDKKVICNKFIQQC---------PVTTMVWLADGP-IIYGQ--SDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRG 144 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~---------~v~~v~~s~~~~-l~~~~--~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g 144 (1637)
+ +.+.....+.. .+.+++|+|+|+ +++++ .++.|.+||..+++. ..+..+...+.+++|+|+|
T Consensus 121 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 121 G----EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp C----CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred C----eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 5 22222222211 278999999999 66554 578999999999988 5555466678899999999
Q ss_pred CeEEEEeCCCcEEEEEecCCCCcccccccccc----cCCCCcEEEEecCC--eEEEEe-cCCeEEEEe-CCCceeEEeec
Q psy12802 145 AGVLSGHADGSIVRYYVTEDASNFDQQQGRVV----QHPVPPYALSWPAG--YILAAG-SDRIVTIYE-SDGRVHRIFDY 216 (1637)
Q Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~--~l~~~~-~d~~i~iwd-~~~~~~~~~~~ 216 (1637)
+.+++++.++.|.+||..+. +....+. ++...+.+++|+|+ .+++++ .++.|.+|| .+++.+..+..
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADN-----KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp TEEEEECTTSEEEEEETTTT-----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCC-----eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99999999999999998863 4444433 25567888999984 455554 459999999 78888887774
Q ss_pred cCCCCCCccEEEEEECCCCCEEEEEe-cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCC
Q psy12802 217 TAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG 291 (1637)
Q Consensus 217 ~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg 291 (1637)
. . ...++|+|+|+.+++++ .++ |.+||..+.... ..+.....+.+++|+|||++|+++..++
T Consensus 272 ~----~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 272 P----E---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV------KTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S----S---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE------EEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred C----C---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE------EEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 3 1 24689999999776666 455 999998765432 2223334788999999999887776554
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=4.4e-17 Score=193.59 Aligned_cols=281 Identities=11% Similarity=0.109 Sum_probs=184.1
Q ss_pred CeEEEE-ECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC-CcEEEEEcC--CCce---eeecc
Q psy12802 59 TKLAVA-QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD-GKIKAAHVK--ANKT---QTLYA 130 (1637)
Q Consensus 59 ~~la~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d-~~v~vwd~~--~~~~---~~~~~ 130 (1637)
++++++ +.|+.|++|++... +....+ ....+...+.+++|+|+|+ +++++.+ +.|.+|++. +++. ..+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHE-GALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTT-SCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEEeCCCCCeEEEEEECCC-CcEEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 445444 77999999999642 222222 2235777899999999999 8777776 999999998 6664 23333
Q ss_pred cCCcEEEEEEecCCCeEEEEeC-CCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEe-cCCeEEEEe-
Q psy12802 131 SNSFVVALCLNVRGAGVLSGHA-DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAG-SDRIVTIYE- 205 (1637)
Q Consensus 131 ~~~~v~~l~~s~~g~~l~s~~~-dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~d~~i~iwd- 205 (1637)
+ ..+.+++|+|+|+.+++++. ++.|.+||+.....+ .....+. ....+.+++|+|+ .+++++ .++.|.+||
T Consensus 83 ~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 83 P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV--GVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE--EEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc--ccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 3 37899999999998877665 889999999521111 2333333 3456889999984 566666 899999999
Q ss_pred CC-CceeEEe--eccCCCCCCccEEEEEECCCCCEEEEEe-cCc-EEEEEeCCCCCcccc-CCCc----ccCCCcceeEE
Q psy12802 206 SD-GRVHRIF--DYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPSKSVWEE-QPNK----TIPNLYTISAL 275 (1637)
Q Consensus 206 ~~-~~~~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~-i~i~~~~~~~~~~~~-~~~~----~~~~~~~i~~l 275 (1637)
.+ ++..... .... .....+..++|+|+|+.+++++ .++ +.+|+++.....+.. .... .......+..+
T Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp CTTSCEEEEEEEEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred cCCCceeeeccccccc--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 44 5543322 1111 1334688899999999776665 555 999999753332110 0001 11123456789
Q ss_pred EEcCCCCEEEE-EecCCcEEEEEccc--cceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCc
Q psy12802 276 SWKRDGSRIAC-GGLCGSVELFESVL--KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 352 (1637)
Q Consensus 276 ~~spdg~~l~~-~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 352 (1637)
+|+|||++|++ +..++.|.+||+.. +... .+......+ .+..++|+|++
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~---------------------------~~~~~~~~~-~~~~~~~s~dg 288 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLS---------------------------KEGFQPTET-QPRGFNVDHSG 288 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEE---------------------------EEEEEECSS-SCCCEEECTTS
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceE---------------------------EeeeecCCC-ccceEEECCCC
Confidence 99999998774 44789999999852 1110 010011112 37789999998
Q ss_pred eEEEE-e-CCCcEEEeec--cccceee
Q psy12802 353 RYLVA-R-TPDTLLLGDL--HRNLLSE 375 (1637)
Q Consensus 353 ~~lv~-~-~~~~i~i~d~--~~~~~~~ 375 (1637)
+++++ . .++.+.+|++ .++.+..
T Consensus 289 ~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp SEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred CEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 86665 3 4789999955 4555443
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=1.9e-17 Score=196.17 Aligned_cols=256 Identities=8% Similarity=0.060 Sum_probs=182.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCC------ccc---ceEEEEECCCCCeEEE-EECCCeEEEEEcCCCCCCceeEee-ccCC-
Q psy12802 24 VRLRSEGNVAGIWAWRGQNGR------KSY---VVKGLAFSPDSTKLAV-AQSDNIIFIYKLGDDWGDKKVICN-KFIQ- 91 (1637)
Q Consensus 24 ~~la~~~~d~~i~vwd~~~~~------h~~---~V~~~~~spd~~~la~-~~~d~~i~iw~~~~~~~~~~~~~~-~~~~- 91 (1637)
.++++++.++.|++||..+++ ... .+.+++|+|||+++++ ++.++.|.+||+.++ +.+.. ..++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC----CeEeeEEcCCc
Confidence 478899999999999998776 233 5889999999987754 456789999999875 22211 1122
Q ss_pred ---CCCEEEEEEcCCCC-EEEEe------------CCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCCc
Q psy12802 92 ---QCPVTTMVWLADGP-IIYGQ------------SDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGS 155 (1637)
Q Consensus 92 ---~~~v~~v~~s~~~~-l~~~~------------~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~ 155 (1637)
...+.+++|+|+|+ +++++ .++.|.+||+.+++..........+.+++|+|+|+.++++ ++.
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSS
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCe
Confidence 22567899999998 77665 5799999999998873333335568889999999998888 689
Q ss_pred EEEEEecCCCCcccccccccccCC--CCcEEEEecCC--eEEEEe-cCC-----------------------eEEEEe-C
Q psy12802 156 IVRYYVTEDASNFDQQQGRVVQHP--VPPYALSWPAG--YILAAG-SDR-----------------------IVTIYE-S 206 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~~~~--~~v~~~~~~~~--~l~~~~-~d~-----------------------~i~iwd-~ 206 (1637)
|.+||+.+. +....+..+. .++ .|+|+ .+++++ .++ .|.+|| .
T Consensus 156 i~~~d~~~~-----~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 227 (337)
T 1pby_B 156 LHVMDPEAG-----TLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp EEEEETTTT-----EEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EEEEECCCC-----cEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence 999999863 3433333322 222 56663 233222 222 478999 6
Q ss_pred CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEE
Q psy12802 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC 286 (1637)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 286 (1637)
+++.. .+... .+...+.+++|+|+|+.++++ .+.|.+||....+.. ..+.....+.+++|+|||++|++
T Consensus 228 ~~~~~-~~~~~---~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 228 TGEMA-MREVR---IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASI------KRVPLPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp TCCEE-EEEEE---ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEE------EEEECSSCCCEEEECTTSCEEEE
T ss_pred CCCce-EeecC---CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCc------ceecCCCceeeEEECCCCCEEEE
Confidence 66654 44332 344578899999999999988 333999998765432 12222346789999999999999
Q ss_pred EecCCcEEEEEcccccee
Q psy12802 287 GGLCGSVELFESVLKRTI 304 (1637)
Q Consensus 287 ~~~dg~v~iwd~~~~~~~ 304 (1637)
++.++.|.+||+.+++.+
T Consensus 297 ~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 297 GGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ESBSSEEEEEETTTCCEE
T ss_pred EcCCCcEEEEECcCCcEE
Confidence 999999999999776543
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.77 E-value=5.7e-17 Score=191.42 Aligned_cols=288 Identities=10% Similarity=0.064 Sum_probs=186.8
Q ss_pred EEECCCCCe-EEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe-CCCcEEEEEcCCCce--e
Q psy12802 52 LAFSPDSTK-LAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ-SDGKIKAAHVKANKT--Q 126 (1637)
Q Consensus 52 ~~~spd~~~-la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~-~d~~v~vwd~~~~~~--~ 126 (1637)
..|++++++ +++++.++.|.+||..++ +.......+...+ +++|+|+|+ +++++ .++.|.+||+.+++. .
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL----EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC----CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc----ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence 456777666 557778999999999875 2222222344556 999999999 65554 489999999999885 4
Q ss_pred eecccCCcEEEEEEecCCCeEEEEeCCC---cEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEE-ecCCe
Q psy12802 127 TLYASNSFVVALCLNVRGAGVLSGHADG---SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAA-GSDRI 200 (1637)
Q Consensus 127 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg---~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~-~~d~~ 200 (1637)
.+..+..+..+++|+|+|++++++..++ .|.+||+.+. +.+..+. +...+.+++|+|+ .++++ ..++.
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-----~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-----KFISTIP-IPYDAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-----EEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-----CeEEEEE-CCCCccceEECCCCCEEEEEecCCCc
Confidence 4555555555599999999999655553 8999999863 4444443 4556799999995 45554 55578
Q ss_pred -EEEEe--CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEec-Cc-EEEEEeCCCCCccccCCCcccCCCcceeEE
Q psy12802 201 -VTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL 275 (1637)
Q Consensus 201 -i~iwd--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l 275 (1637)
|.+|+ ..+.....-... - .....+..++|+|+|+.+++++. ++ |.+||+...... .....+.....+..+
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~ 226 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEF-I-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---TLLNAVGTNNLPGTI 226 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEE-E-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---EEEEEEECSSCCCCE
T ss_pred eEEEEEECCCCcEeecCCcc-c-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---ceeeeccCCCCCceE
Confidence 99999 334332211000 0 13345889999999997766654 55 999998765530 001222334577899
Q ss_pred EEcCCCCEEEEEe-cCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceE
Q psy12802 276 SWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY 354 (1637)
Q Consensus 276 ~~spdg~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 354 (1637)
+|+|||+++++++ .++.|.+||..+++......+ . ..+. ...........++|+|++++
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~----~-------~~~~---------~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF----G-------HGLL---------IDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE----E-------CCCC---------CCCGGGTTCCCEEECTTSSE
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc----c-------cccc---------cCCCCcccccceEECCCCCE
Confidence 9999999776554 578899999987654221111 0 0000 00011112367899999876
Q ss_pred EE-Ee-CCCcEEEeeccccceee
Q psy12802 355 LV-AR-TPDTLLLGDLHRNLLSE 375 (1637)
Q Consensus 355 lv-~~-~~~~i~i~d~~~~~~~~ 375 (1637)
++ +. .++.+.+||+.+..+..
T Consensus 287 l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEecCCCCcEEEEEecCCcccc
Confidence 64 43 45699999998766543
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=220.64 Aligned_cols=319 Identities=9% Similarity=0.040 Sum_probs=201.6
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------cc---ceEEEEECCCCCeEEEEEC---------CCeEEEEEc
Q psy12802 15 QDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK-------SY---VVKGLAFSPDSTKLAVAQS---------DNIIFIYKL 75 (1637)
Q Consensus 15 ~~~~~spdg~~la~~~~d~~i~vwd~~~~~h-------~~---~V~~~~~spd~~~la~~~~---------d~~i~iw~~ 75 (1637)
.+++|||||+++++ +.|++|++||..+++. .. .|.+++|||||++|++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 37899999965555 4689999999998772 11 3899999999999998876 789999999
Q ss_pred CCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeee--cccCCcE-----------------
Q psy12802 76 GDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTL--YASNSFV----------------- 135 (1637)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~v----------------- 135 (1637)
.++ +.+.. ......+.+++|||||+ ++++. ++.|++|++.+++...+ .++...|
T Consensus 98 ~~g----~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 98 SNG----EFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTT----EECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCC----ccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 875 22100 01135688999999999 88775 78999999998887433 2333323
Q ss_pred EEEEEecCCCeEEEEeCCC----------------------------------cEEEEEecCCCCcccccc--------c
Q psy12802 136 VALCLNVRGAGVLSGHADG----------------------------------SIVRYYVTEDASNFDQQQ--------G 173 (1637)
Q Consensus 136 ~~l~~s~~g~~l~s~~~dg----------------------------------~i~iwd~~~~~~g~~~~~--------~ 173 (1637)
.+++|||||+.|++++.|. .|++||+.+. ... .
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~ 246 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-----AYVGPQEVPVPA 246 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-----HHHCCEECCCCH
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-----CccceeEccCCc
Confidence 4899999999999988652 7889998763 221 2
Q ss_pred ccccCCCCcEEEEecCC-eEEEE-ecC----CeEEEEe----CCC-ceeEEeeccCCCCCCccEE-----EEEECCCCCE
Q psy12802 174 RVVQHPVPPYALSWPAG-YILAA-GSD----RIVTIYE----SDG-RVHRIFDYTAPHYKEREFT-----VACSSPSGQA 237 (1637)
Q Consensus 174 ~~~~~~~~v~~~~~~~~-~l~~~-~~d----~~i~iwd----~~~-~~~~~~~~~~~~~~~~~i~-----~~~~sp~g~~ 237 (1637)
.+.+|...+.+++|+|+ .++.. ... ..|.+|| ..+ +....+..... .+...+. .+.|+|||+.
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE-SRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE-CSSSCSSSSSCCCCEECTTSSC
T ss_pred cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc-cCCceEccccCCccEECCCCCe
Confidence 24468888999999996 44433 222 2488888 443 33322210000 2333444 7899999996
Q ss_pred EEE--EecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecC-----CcEEEEEccccceeeeCcE
Q psy12802 238 VVV--GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-----GSVELFESVLKRTIWKGKF 309 (1637)
Q Consensus 238 l~~--~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~ 309 (1637)
++. ...++ ..||-++...... .....+...+..+.++ +++.|+..+.+ +.+++|.+.... +.
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~~~----~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~----g~- 395 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVENA----IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS----YP- 395 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCSTTC----EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS----SS-
T ss_pred EEEEEEccCCceEEEEEECCCCce----EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC----CC-
Confidence 655 33444 4444444322211 1112234457777777 88877766654 888899874310 00
Q ss_pred EEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE-e-C--CCcEEEeeccccce
Q psy12802 310 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-R-T--PDTLLLGDLHRNLL 373 (1637)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~-~--~~~i~i~d~~~~~~ 373 (1637)
... ..+... .......+..+.|+|++++++. . + ...+.+||+.+++.
T Consensus 396 -------~~~--~~l~~~--------~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 396 -------PSK--KCVTCH--------LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp -------CCE--EESSTT--------TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred -------CCc--eeccCc--------cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 000 000000 0001235678899999766554 2 2 24678898876654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=3.9e-17 Score=198.26 Aligned_cols=239 Identities=16% Similarity=0.166 Sum_probs=168.4
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCC-------C---------------CcccceEEEEECCCCCeEE----
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQN-------G---------------RKSYVVKGLAFSPDSTKLA---- 62 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~-------~---------------~h~~~V~~~~~spd~~~la---- 62 (1637)
.....++.++++|++.++++++.++ +++|+... + .+...|++++|+|+|++|+
T Consensus 34 ~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 34 LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 3455689999999999999999886 88887531 0 0234699999999999999
Q ss_pred EEECCCeEEEEEcCCCC----C---CceeEeeccCCCCCEEEEEEcCC-CC-EEEEeCCCcEEEEEcCCCce-eeecccC
Q psy12802 63 VAQSDNIIFIYKLGDDW----G---DKKVICNKFIQQCPVTTMVWLAD-GP-IIYGQSDGKIKAAHVKANKT-QTLYASN 132 (1637)
Q Consensus 63 ~~~~d~~i~iw~~~~~~----~---~~~~~~~~~~~~~~v~~v~~s~~-~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~ 132 (1637)
+|+.|++|+|||+.+.. . ....+....+|...|.+++|+|+ +. +++++.||+|++||++++.. ....+|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 67889999999986531 0 01123445578999999999998 56 89999999999999999866 5667789
Q ss_pred CcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc-------cCCCCcEEEEecCC-eEEE--EecCC---
Q psy12802 133 SFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV-------QHPVPPYALSWPAG-YILA--AGSDR--- 199 (1637)
Q Consensus 133 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~-------~~~~~v~~~~~~~~-~l~~--~~~d~--- 199 (1637)
..|.+++|+|+|+.|++|+.||+|++||.+. .....+. .|...+.++.|+++ .+++ ++.+|
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTTC------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccCC------cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 9999999999999999999999999999872 2222222 23448899999885 3332 33343
Q ss_pred ---eEEEEe-CCC--c---eeEEeecc-CCC-CCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCC
Q psy12802 200 ---IVTIYE-SDG--R---VHRIFDYT-APH-YKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPS 254 (1637)
Q Consensus 200 ---~i~iwd-~~~--~---~~~~~~~~-~~~-~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~ 254 (1637)
.+++|+ ... + ....+... .+. ....+...+.+-++.+++++++... |.+......
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~ 334 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSD 334 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTT
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCC
Confidence 388999 322 1 11222111 000 1111222334447888888877766 777765543
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.76 E-value=1e-16 Score=191.38 Aligned_cols=265 Identities=9% Similarity=0.009 Sum_probs=193.4
Q ss_pred cccceEEEEECCCCCeEEEEEC-------CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EE-EEeCCCcE
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQS-------DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-II-YGQSDGKI 115 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~-~~~~d~~v 115 (1637)
....+..++|+|+|+++++++. ++.|.+||..++ +.+... .....+.+++|+|+|+ ++ +...++.|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~----~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL----EVTQAI-HNDLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC----CEEEEE-EESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC----eEEEEE-ecCCCcceEEECCCCCEEEEEecCCCEE
Confidence 3457889999999999988774 568999999875 222222 2234577899999999 54 45567999
Q ss_pred EEEEcCCCce-eeecccCC---------cEEEEEEecCCCeEEEEe--CCCcEEEEEecCCCCcccccccccccCCCCcE
Q psy12802 116 KAAHVKANKT-QTLYASNS---------FVVALCLNVRGAGVLSGH--ADGSIVRYYVTEDASNFDQQQGRVVQHPVPPY 183 (1637)
Q Consensus 116 ~vwd~~~~~~-~~~~~~~~---------~v~~l~~s~~g~~l~s~~--~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~ 183 (1637)
.+||..+++. ..+..+.. .+.+++|+|+|+.+++++ .++.|.+||..+. +....+..+...+.
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-----KLKTAIQNTGKMST 188 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-----EEEEEECCCCTTCC
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-----ceEEEecCCCCccc
Confidence 9999999987 55544332 278999999999887776 4788999999863 55555555666788
Q ss_pred EEEecCC--eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC-c-EEEEEeCCCCCcc
Q psy12802 184 ALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKLFAWSPSKSVW 258 (1637)
Q Consensus 184 ~~~~~~~--~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-~-i~i~~~~~~~~~~ 258 (1637)
++.|+|+ .+++++.++.|.+|| .+++.+..+..... .+...+..++|+|+|+.+++++.+ + |.+||..+.....
T Consensus 189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 9999884 788888899999999 78888877765322 345568899999999988877765 4 9999987665432
Q ss_pred ccCCCcccCCCcceeEEEEcCCCCEEEEEe-cCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEec
Q psy12802 259 EEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS 337 (1637)
Q Consensus 259 ~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 337 (1637)
... . .....++|+|||+++++++ .++.|.+||..+++.....
T Consensus 268 ~~~------~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~------------------------------ 310 (353)
T 3vgz_A 268 KVA------A-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF------------------------------ 310 (353)
T ss_dssp EEE------C-SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------
T ss_pred EEE------c-CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE------------------------------
Confidence 111 1 1235799999999766555 6899999999765432110
Q ss_pred ccCceeeEEEEecCceEEEE
Q psy12802 338 QYGYEITDVAIMGNDRYLVA 357 (1637)
Q Consensus 338 ~~~~~i~~v~~s~~~~~lv~ 357 (1637)
..+..+..++|+|+++++..
T Consensus 311 ~~~~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 311 DTPTHPNSLALSADGKTLYV 330 (353)
T ss_dssp ECCSEEEEEEECTTSCEEEE
T ss_pred ecCCCCCeEEEcCCCCEEEE
Confidence 11225788999999875444
No 157
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=1.7e-17 Score=192.48 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=169.5
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCC-CC-------c-ccceEEEEECCCCCeEEEEE--CCCeEEEEEcCCC
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQN-GR-------K-SYVVKGLAFSPDSTKLAVAQ--SDNIIFIYKLGDD 78 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~-~~-------h-~~~V~~~~~spd~~~la~~~--~d~~i~iw~~~~~ 78 (1637)
+...+.+++|||||++|++++ ++.|++||+.+ ++ + ...|.+++|+|||++|++++ .++.+.||.+...
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence 567799999999999999987 78999999988 65 2 36788999999999999998 4455666655432
Q ss_pred CCCceeEeeccCCCCCEEEEEEcCCCC-EE-EEeCCCcEEEEEc--CCCceeeecccCCcEEEEEEecCCCeEEEEe-CC
Q psy12802 79 WGDKKVICNKFIQQCPVTTMVWLADGP-II-YGQSDGKIKAAHV--KANKTQTLYASNSFVVALCLNVRGAGVLSGH-AD 153 (1637)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~-~~~~d~~v~vwd~--~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~d 153 (1637)
.+... .. .+...+.+++|+|+++ ++ +++.++.+.+|++ .+++...+..+...+.+++|+|+|+.+++++ .+
T Consensus 119 ~~~~~---~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 119 GGTPR---LM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp CCCCE---EC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCceE---Ee-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCC
Confidence 12211 11 2334589999999999 66 6778898999985 4566677888889999999999999888776 58
Q ss_pred CcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecC-----------CeEEEEe-CCCceeEEeeccCC
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSD-----------RIVTIYE-SDGRVHRIFDYTAP 219 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d-----------~~i~iwd-~~~~~~~~~~~~~~ 219 (1637)
+.+.+|++.... .....+..|...+.++.|+|+ .+++++.+ +.|.+|| .+++........
T Consensus 195 ~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-- 268 (297)
T 2ojh_A 195 GQMQIWRVRVDG----SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-- 268 (297)
T ss_dssp SSCEEEEEETTS----SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE--
T ss_pred CCccEEEECCCC----CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC--
Confidence 999999987432 455667778888999999984 67776655 5699999 455443332211
Q ss_pred CCCCccEEEEEECCCCCEEEEEecCc
Q psy12802 220 HYKEREFTVACSSPSGQAVVVGSYDN 245 (1637)
Q Consensus 220 ~~~~~~i~~~~~sp~g~~l~~~~~d~ 245 (1637)
.+...+..++|+|+|+.|++++.+.
T Consensus 269 -~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 269 -GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -CCCcccccceECCCCCEEEEEEecc
Confidence 2455788899999999999887654
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.76 E-value=1.3e-17 Score=213.57 Aligned_cols=257 Identities=12% Similarity=0.102 Sum_probs=188.3
Q ss_pred CCceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC------cc-cceEEEEECCCCCeEEEEEC---CCeEEEEEcCC--
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGN-VAGIWAWRGQNGR------KS-YVVKGLAFSPDSTKLAVAQS---DNIIFIYKLGD-- 77 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~-d~~i~vwd~~~~~------h~-~~V~~~~~spd~~~la~~~~---d~~i~iw~~~~-- 77 (1637)
...|.+++|||||++||+++. ++++.||++.++. +. ..|.+++|||| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457899999999999999877 9999999986554 33 58999999999 77776664 45567776654
Q ss_pred CCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCC--
Q psy12802 78 DWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHAD-- 153 (1637)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d-- 153 (1637)
. +....+ .....+...+|+|||+ +++++.++.+.+||+.+++...+..+.. .+++|||||+.+++++.+
T Consensus 100 ~-g~~~~l----~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 100 P-GEEQRL----EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp T-TCCEEC----TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred C-Cccccc----cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2 112211 1222344678999987 4445555566699999998866665554 889999999999988877
Q ss_pred --CcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEEEecCC--eEEEEe-CCCceeEEeeccCCCCCCccE
Q psy12802 154 --GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDR--IVTIYE-SDGRVHRIFDYTAPHYKEREF 226 (1637)
Q Consensus 154 --g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~--~i~iwd-~~~~~~~~~~~~~~~~~~~~i 226 (1637)
+.|++||+.+. ....+..|...+..++|||+ .|+++..++ .|.+|| .+++.. .+. .+...+
T Consensus 173 ~~~~i~~~d~~~g------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-----~~~~~~ 240 (582)
T 3o4h_A 173 GRVSLFTSNLSSG------GLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE-----LPSKDF 240 (582)
T ss_dssp TEEEEEEEETTTC------CCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC-----CSCSHH
T ss_pred CCeEEEEEcCCCC------CceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc-----CCCcCh
Confidence 78999998763 34567788889999999995 677777788 899999 555554 444 233344
Q ss_pred EEEE--------ECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCc---EE
Q psy12802 227 TVAC--------SSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS---VE 294 (1637)
Q Consensus 227 ~~~~--------~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~---v~ 294 (1637)
..++ |||||..+++++.++ +++|++ ++.. . ...+.+.+++|+ ||+.+++++.+.+ +.
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~------~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV------E--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV 309 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE------C--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee------c--cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence 4455 999998889999888 999998 2211 1 223578899999 9998888877744 55
Q ss_pred EEEc
Q psy12802 295 LFES 298 (1637)
Q Consensus 295 iwd~ 298 (1637)
+||.
T Consensus 310 ~~d~ 313 (582)
T 3o4h_A 310 SLPS 313 (582)
T ss_dssp EETT
T ss_pred EEcC
Confidence 5554
No 159
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.8e-16 Score=198.80 Aligned_cols=365 Identities=11% Similarity=0.007 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+..+|.++...|++++|+.+|.++... .|+ ...++..+|.+|...|++++|+
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALEL------------------------KPD-YSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------CSC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------------------------ChH-HHHHHHHHHHHHHHHhhHHHHH
Confidence 556778888988888888888888765322 455 6778899999999999999999
Q ss_pred HHHHhccCH--------HHHHHHHHHcCCHHHHHHHHH--------------------------------------hh--
Q psy12802 1038 KIYSHCDMH--------EQIVDMYHQTGQWEKAYAIAE--------------------------------------QH-- 1069 (1637)
Q Consensus 1038 ~~~~~~~~~--------~~~~~~y~~~g~~~~A~~~~~--------------------------------------~~-- 1069 (1637)
..|.++... ...+..+.+......+.+... ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 94 FDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 999887322 112222222111111111110 00
Q ss_pred ------cChhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHH
Q psy12802 1070 ------LNVGEIKATFIQKCKQLEE---ENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHL 1140 (1637)
Q Consensus 1070 ------~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 1140 (1637)
...+.....+...|..+.. .|++++|+..|.++....+.. +-......+ . .+....++..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~-~--------~~~~~~~~~~~ 243 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ-LDKNNEDEK-L--------KEKLAISLEHT 243 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH-TTTSTTCHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh-hccCccccc-c--------ChHHHHHHHHH
Confidence 0012336777888888776 899999999988754400000 000000000 0 01113344555
Q ss_pred HHHHHHccCHHHHHHHHHHccC-------HHHHHHHHHhcCCHHHHHHHHHh-----cCCccchHHHHHHHHHhcCcchH
Q psy12802 1141 AQECEESKNYKQAEKYYLDCNE-------WKLAIKMYRSLNLWEDAYRIALS-----NGGQEAVEPVVYLWAKSLGGDSA 1208 (1637)
Q Consensus 1141 a~~~~~~g~~~~A~~~y~~a~~-------~~~~~~~y~~~g~~~~A~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A 1208 (1637)
|..+...|++++|..+|.++-. +..++.+|...|++++|++.+++ ..+..++..++..+...|++++|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 5555555555555555555410 11122222222222222222221 22333455555566666666666
Q ss_pred HHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCC
Q psy12802 1209 VRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQD 1288 (1637)
Q Consensus 1209 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~ 1288 (1637)
++.|.++ ....+..+.++..+|..+...|++++|+..|.++ +
T Consensus 324 ~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~-------- 365 (514)
T 2gw1_A 324 GKDFDKA------------------------KELDPENIFPYIQLACLAYRENKFDDCETLFSEA------K-------- 365 (514)
T ss_dssp HHHHHHH------------------------HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH------H--------
T ss_pred HHHHHHH------------------------HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH------H--------
Confidence 5555443 0123445667778888888888888888777776 2
Q ss_pred HHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHH
Q psy12802 1289 WENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQE 1368 (1637)
Q Consensus 1289 ~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~ 1368 (1637)
...|. .+.++..+|..+...|++++|+..|.+ ++++.....+.
T Consensus 366 ---------~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------a~~~~~~~~~~-------- 408 (514)
T 2gw1_A 366 ---------RKFPE-APEVPNFFAEILTDKNDFDKALKQYDL-------------------AIELENKLDGI-------- 408 (514)
T ss_dssp ---------HHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHHHTSSSC--------
T ss_pred ---------HHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHHhhhccchH--------
Confidence 22333 356777888888888888777766633 33322221100
Q ss_pred HHHHHhcccccchHHHHHHHHHHHH---cCCHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHhccCccchhhhhhhhhhh
Q psy12802 1369 YEKEINTNISKDIHSLITQARQWEQ---NGEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLKYLNHDQSYKILPSLVPK 1445 (1637)
Q Consensus 1369 ~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 1445 (1637)
......+..+|..+.. .|++++|+..|.++. ++.+ ....+...+|..
T Consensus 409 ---------~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~---------------~~~~------~~~~~~~~la~~ 458 (514)
T 2gw1_A 409 ---------YVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS---------------KLDP------RSEQAKIGLAQM 458 (514)
T ss_dssp ---------SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH---------------HHCT------TCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH---------------HhCc------ccHHHHHHHHHH
Confidence 0012258889999999 999999999988765 2211 112456677888
Q ss_pred hhhccCHHHHHHHHhcc
Q psy12802 1446 LMEFKQYDLAVRVYLNI 1462 (1637)
Q Consensus 1446 l~~~~~~~~A~~~y~~~ 1462 (1637)
+.+.|++++|.+.|.++
T Consensus 459 ~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 88888888888766654
No 160
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=7.9e-16 Score=195.74 Aligned_cols=432 Identities=13% Similarity=0.047 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhhcccCCCCCCchHHHHHHHHHHhcCHHHHHHHH
Q psy12802 728 AEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIY 807 (1637)
Q Consensus 728 ~~~~w~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~A~~~~ 807 (1637)
....|..+|..+...++++.|..+|...-.. .|..+..+..+|.++...|++++|+..|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---------------------DPNEPVFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4577889999999999999999988665433 4566677888899999999999998887
Q ss_pred HhcCcHHHHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHH
Q psy12802 808 LENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKAC 887 (1637)
Q Consensus 808 ~~~~~~~~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~g~~~~Ai~~y~~~~~~~~a~ 887 (1637)
..++.. .+.. ...+... +.++...|++++|+..|.... ..
T Consensus 83 ------~~al~~-----------------~p~~---~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~-~~--- 122 (537)
T 3fp2_A 83 ------TKALEI-----------------KPDH---SKALLRR----------ASANESLGNFTDAMFDLSVLS-LN--- 122 (537)
T ss_dssp ------HHHHHH-----------------CTTC---HHHHHHH----------HHHHHHHTCHHHHHHHHHHHC------
T ss_pred ------HHHHhc-----------------CCch---HHHHHHH----------HHHHHHcCCHHHHHHHHHHHh-cC---
Confidence 333322 1111 1112222 667788888888888875331 11
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCH-----------HHHHHHHHhCCChHHHHHHHHHhCC--
Q psy12802 888 NLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNEN-----------EKALECYRKGKVYDKCIDLTRKINP-- 954 (1637)
Q Consensus 888 ~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~-----------~~a~~~y~~~~~~~~A~~l~~~~~~-- 954 (1637)
++........+...+...+|...+...... ...+..|....+...++..+.....
T Consensus 123 ------------~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 123 ------------GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred ------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 111111122333445556677777665332 3455666666666666654444322
Q ss_pred CChHHHHHHHHHHHHh--------cccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccch-------HHH
Q psy12802 955 KNVTALEEEWGDHLIE--------NKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDI-------AQH 1019 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~--------~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~-------~~~ 1019 (1637)
+....+...++..+.. .|++++|+.+|.++... .|+ . ..+
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~------------------------~p~-~~~~~~~~~~~ 245 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA------------------------NTV-DDPLRENAALA 245 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--------------------------CC-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH------------------------CCC-cchhhHHHHHH
Confidence 2222233333333222 22344444443332211 222 2 234
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy12802 1020 VKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLY 1099 (1637)
Q Consensus 1020 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y 1099 (1637)
+..+|..+...|++++|+..|.++... .|. ...+..+|..+...|++++|+..|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~-------------------------~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL-------------------------HPT-PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-------------------------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence 666677777777777777766664321 133 677888999999999999998886
Q ss_pred HHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHH
Q psy12802 1100 LIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDA 1179 (1637)
Q Consensus 1100 ~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A 1179 (1637)
.++- ...| ....++..+|..+...|++++|+..|.++
T Consensus 300 ~~~~-----------------------~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------- 336 (537)
T 3fp2_A 300 QKAV-----------------------DLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA------------------- 336 (537)
T ss_dssp HHHH-----------------------HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHh-----------------------ccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------
Confidence 6531 1122 23578899999999999999999999988
Q ss_pred HHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q psy12802 1180 YRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLED 1259 (1637)
Q Consensus 1180 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~ 1259 (1637)
+...+.+..++..++..+...|++++|++.|.++ + ...+..+.++..+|..+..
T Consensus 337 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------------~-----~~~~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 337 --QSLNPENVYPYIQLACLLYKQGKFTESEAFFNET-------------------K-----LKFPTLPEVPTFFAEILTD 390 (537)
T ss_dssp --HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H-----HHCTTCTHHHHHHHHHHHH
T ss_pred --HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------H-----HhCCCChHHHHHHHHHHHH
Confidence 3334455567778888888888888888777554 1 1145567789999999999
Q ss_pred CCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhc----------CChhhHHHHHH
Q psy12802 1260 NGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFEN----------ENFSKFETLLL 1329 (1637)
Q Consensus 1260 ~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~ 1329 (1637)
.|++++|+..|.++ +.+..... .....-..+...+..+... |++++|+..|
T Consensus 391 ~g~~~~A~~~~~~a------~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~- 451 (537)
T 3fp2_A 391 RGDFDTAIKQYDIA------KRLEEVQE------------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL- 451 (537)
T ss_dssp TTCHHHHHHHHHHH------HHHHHHCS------------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH-
T ss_pred hCCHHHHHHHHHHH------HHcCCcch------------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH-
Confidence 99999999999887 44332110 0111122244555555555 5555555544
Q ss_pred HhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q psy12802 1330 RAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKN 1409 (1637)
Q Consensus 1330 ~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~ 1409 (1637)
+++++. .| .+..++..+|.+|.+.|++++|+.+|.++..
T Consensus 452 ------------------~~a~~~----~p-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 452 ------------------TKACEL----DP-------------------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp ------------------HHHHHH----CT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHh----CC-------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333322 22 2334589999999999999999999999886
Q ss_pred cch
Q psy12802 1410 VDV 1412 (1637)
Q Consensus 1410 ~~~ 1412 (1637)
..+
T Consensus 491 ~~~ 493 (537)
T 3fp2_A 491 LAR 493 (537)
T ss_dssp HC-
T ss_pred hCC
Confidence 665
No 161
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=2.2e-16 Score=200.89 Aligned_cols=397 Identities=13% Similarity=0.045 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+...|..+...|++++|+.+|.++... +|+ .+.++..+|.+|...|++++|+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~la~~~~~~g~~~~A~ 79 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------------------------DPN-EPVFYSNISACYISTGDLEKVI 79 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh------------------------CCC-CcHHHHHHHHHHHHcCCHHHHH
Confidence 344567888888888888888888765332 454 6778999999999999999999
Q ss_pred HHHHhccCH--------HHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCc----
Q psy12802 1038 KIYSHCDMH--------EQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEP---- 1105 (1637)
Q Consensus 1038 ~~~~~~~~~--------~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~---- 1105 (1637)
+.|.++... ..+..+|.+.|++++|++.++.....+..... ....+...+...+|+..|.+....
T Consensus 80 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 156 (537)
T 3fp2_A 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGA---SIEPMLERNLNKQAMKVLNENLSKDEGR 156 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999887432 22455555666666666555432111211111 122333344445555555553221
Q ss_pred -------hHHHHHHHhcCCHHHHHHHHHhhCC--CchHHHHHHH--------HHHHHHccCHHHHHHHHHHccC------
Q psy12802 1106 -------DLAISMFKNQRQYENMIKLVRNYHP--DLLDTTLLHL--------AQECEESKNYKQAEKYYLDCNE------ 1162 (1637)
Q Consensus 1106 -------~~ai~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l--------a~~~~~~g~~~~A~~~y~~a~~------ 1162 (1637)
...+..|....+.+.+...+..... +........+ +......|++++|+..|.++-.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~ 236 (537)
T 3fp2_A 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236 (537)
T ss_dssp --CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCH
T ss_pred cccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 1122223333333333322222111 1111111222 2233344566666666666511
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHhc----CCccchHHHHHHHHHhcCcchHHHHHHHhc--------cHHHH
Q psy12802 1163 ---------WKLAIKMYRSLNLWEDAYRIALSN----GGQEAVEPVVYLWAKSLGGDSAVRLLNRLS--------LLESC 1221 (1637)
Q Consensus 1163 ---------~~~~~~~y~~~g~~~~A~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~ 1221 (1637)
+..+..+|...|++++|+..+++. ++..++..+|..+...|++++|++.|.++- .+...
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 316 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 233345555566666666555442 223445555666666666666666555431 11111
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhh
Q psy12802 1222 ISNACDTYQFDFAFELAKIGM--KSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEH 1299 (1637)
Q Consensus 1222 i~~~~~~~~~~~a~~l~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~ 1299 (1637)
..++...|++++|+..++... .+..+.++..+|..+...|++++|+..|.++ .+.
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----------------------~~~ 373 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET-----------------------KLK 373 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------HHh
Confidence 222333333333333332221 2223333444444444444444444444333 111
Q ss_pred CCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhccccc
Q psy12802 1300 DPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISK 1379 (1637)
Q Consensus 1300 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~ 1379 (1637)
.|. .+.++..+|..+...|++++|+..| ++|++......+ ...
T Consensus 374 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~-------------------~~a~~~~~~~~~-----------------~~~ 416 (537)
T 3fp2_A 374 FPT-LPEVPTFFAEILTDRGDFDTAIKQY-------------------DIAKRLEEVQEK-----------------IHV 416 (537)
T ss_dssp CTT-CTHHHHHHHHHHHHTTCHHHHHHHH-------------------HHHHHHHHHCSS-----------------CSS
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHH-------------------HHHHHcCCcchh-----------------hHH
Confidence 232 2345555555555555555555444 222222222111 111
Q ss_pred chHHHHHHHHHHHHc----------CCHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHhccCccchhhhhhhhhhhhhhc
Q psy12802 1380 DIHSLITQARQWEQN----------GEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLKYLNHDQSYKILPSLVPKLMEF 1449 (1637)
Q Consensus 1380 ~~~~~~~~a~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1449 (1637)
....+..+|.++... |++++|+..|.++.. +.+ ...++...+|..+.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------------~~p------~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---------------LDP------RSEQAKIGLAQLKLQM 475 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---------------HCT------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---------------hCC------CCHHHHHHHHHHHHHh
Confidence 233467788999998 999999999997652 211 1225667889999999
Q ss_pred cCHHHHHHHHhccc
Q psy12802 1450 KQYDLAVRVYLNID 1463 (1637)
Q Consensus 1450 ~~~~~A~~~y~~~~ 1463 (1637)
|++++|.+.|.++-
T Consensus 476 g~~~~A~~~~~~al 489 (537)
T 3fp2_A 476 EKIDEAIELFEDSA 489 (537)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99999997776653
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=1.2e-16 Score=193.87 Aligned_cols=261 Identities=11% Similarity=0.068 Sum_probs=181.8
Q ss_pred CeEEEEEcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC-------CCceeEe----eccCCCCCEEEEEEc
Q psy12802 33 AGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW-------GDKKVIC----NKFIQQCPVTTMVWL 101 (1637)
Q Consensus 33 ~~i~vwd~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~-------~~~~~~~----~~~~~~~~v~~v~~s 101 (1637)
+.+++|+....-+...++.++++|++.++++++.++ |++|+..... ....... ....+...|.+++|+
T Consensus 23 ~~vri~~~~~~~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 101 (434)
T 2oit_A 23 KKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS 101 (434)
T ss_dssp CEEECSCCCSSCCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC
T ss_pred eeEEecCCccccCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc
Confidence 468888765433556789999999999999999887 8888753210 0011110 112356789999999
Q ss_pred CCCC-EE----EEeCCCcEEEEEcCCC--------c----eeeecccCCcEEEEEEecC-CCeEEEEeCCCcEEEEEecC
Q psy12802 102 ADGP-II----YGQSDGKIKAAHVKAN--------K----TQTLYASNSFVVALCLNVR-GAGVLSGHADGSIVRYYVTE 163 (1637)
Q Consensus 102 ~~~~-l~----~~~~d~~v~vwd~~~~--------~----~~~~~~~~~~v~~l~~s~~-g~~l~s~~~dg~i~iwd~~~ 163 (1637)
|+|+ ++ +++.|++|++||+.++ + ...+.+|...|.+++|+|+ +..|++++.||+|++||+++
T Consensus 102 pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~ 181 (434)
T 2oit_A 102 CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE 181 (434)
T ss_dssp TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS
T ss_pred CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC
Confidence 9999 77 6788999999998765 1 2445679999999999998 88999999999999999987
Q ss_pred CCCcccccccccccCCCCcEEEEecCC--eEEEEecCCeEEEEeCCCceeEEeeccCC--CCCCccEEEEEECCCCCEEE
Q psy12802 164 DASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAP--HYKEREFTVACSSPSGQAVV 239 (1637)
Q Consensus 164 ~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~ 239 (1637)
. .......+|...|.+++|+|+ .|++|+.||+|++||..++....+..+.. ..|...+.+++|++++.+++
T Consensus 182 ~-----~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 182 T-----VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp S-----EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred C-----cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 4 344455678899999999984 89999999999999966777766654322 01334799999999998876
Q ss_pred EEe-cC------c-EEEEEeCCCCC----ccccCCCccc---CCCcceeEEEEcCCCCEEEEEe-cCCcEEEEEcc
Q psy12802 240 VGS-YD------N-IKLFAWSPSKS----VWEEQPNKTI---PNLYTISALSWKRDGSRIACGG-LCGSVELFESV 299 (1637)
Q Consensus 240 ~~~-~d------~-i~i~~~~~~~~----~~~~~~~~~~---~~~~~i~~l~~spdg~~l~~~~-~dg~v~iwd~~ 299 (1637)
+.+ .+ . +++|++..... .|........ ....+...+.+-+|.+++++++ ..+.|.+....
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred EEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 543 22 1 88999876532 1111111100 1111222344447777665544 45557777653
No 163
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=2.8e-16 Score=186.75 Aligned_cols=250 Identities=10% Similarity=0.078 Sum_probs=164.4
Q ss_pred ccceEEEEECCCCCeEEEEEC---CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe-CCCcEEEEEc
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQS---DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ-SDGKIKAAHV 120 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~-~d~~v~vwd~ 120 (1637)
...+..++|||||+ |++++. ++.|.+|++.++ ..+.+.....+...+..++|+|||+ +++++ .++.|.+|++
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ--TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT--EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC--cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 45677899999999 665554 689999999653 2233433345677888999999999 77766 7899999999
Q ss_pred C-CCcee---eecc---------cCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc-CCCCcEEEE
Q psy12802 121 K-ANKTQ---TLYA---------SNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALS 186 (1637)
Q Consensus 121 ~-~~~~~---~~~~---------~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~-~~~~v~~~~ 186 (1637)
. ++... .+.. +...+.+++|+|||+.+++...++.|.+|++...+.- .....+.. ....+..++
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~--~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL--SEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE--EEEEEEECCTTCCEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE--EEeeeEEcCCCCCCceEE
Confidence 5 34432 2211 1234889999999996666667889999999842210 11122222 334678899
Q ss_pred ecCC--eEEE-EecCCeEEEEe-C--CCcee--EEeeccCC-CCCCccEEEEEECCCCCEEEEE-ecCc-EEEEEeCCCC
Q psy12802 187 WPAG--YILA-AGSDRIVTIYE-S--DGRVH--RIFDYTAP-HYKEREFTVACSSPSGQAVVVG-SYDN-IKLFAWSPSK 255 (1637)
Q Consensus 187 ~~~~--~l~~-~~~d~~i~iwd-~--~~~~~--~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~-~~d~-i~i~~~~~~~ 255 (1637)
|+|+ .+++ +..++.|.+|+ . +++.. ..+..... ......+..++|+|||++|+++ ..++ |.+|+++...
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 9985 3544 56688999998 2 35432 22221110 0112458899999999988554 4455 9999987421
Q ss_pred CccccCCCccc-CCCcceeEEEEcCCCCEEEEEecC-CcEEEEEc--cccce
Q psy12802 256 SVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLC-GSVELFES--VLKRT 303 (1637)
Q Consensus 256 ~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~d-g~v~iwd~--~~~~~ 303 (1637)
.. ...... .+...+..++|+|||++|++++.+ +.|.+|++ .+++.
T Consensus 274 ~~---~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 274 HL---TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp CE---EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred cE---EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 11 011111 223457899999999988887754 89999955 44443
No 164
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=6.7e-16 Score=183.46 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=178.4
Q ss_pred CCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe--CCCcEEEEEcCCCce---eeecccCCcEEEEE
Q psy12802 66 SDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ--SDGKIKAAHVKANKT---QTLYASNSFVVALC 139 (1637)
Q Consensus 66 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~--~d~~v~vwd~~~~~~---~~~~~~~~~v~~l~ 139 (1637)
.++.|.+|+++...+....+ ....+...+..++|+|||+ ++++. .++.|.+|++.++.. ..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 35678888876532322222 2233456678899999999 44443 268999999988775 33355778889999
Q ss_pred EecCCCeEEEEe-CCCcEEEEEecCCCCccccccccccc---------CCCCcEEEEecCC--eEEEEecCCeEEEEe-C
Q psy12802 140 LNVRGAGVLSGH-ADGSIVRYYVTEDASNFDQQQGRVVQ---------HPVPPYALSWPAG--YILAAGSDRIVTIYE-S 206 (1637)
Q Consensus 140 ~s~~g~~l~s~~-~dg~i~iwd~~~~~~g~~~~~~~~~~---------~~~~v~~~~~~~~--~l~~~~~d~~i~iwd-~ 206 (1637)
|+|||+.|++++ .+++|.+|++...+.. ..+..+.. +...+.+++|+|+ .+++...++.|.+|+ .
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGAL--TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCE--EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCe--eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 999999988888 6899999999743221 22222221 2234888999984 444555688999999 4
Q ss_pred -CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEec-Cc-EEEEEeCCCCCccccC-CCcc----cCCCcceeEEEEc
Q psy12802 207 -DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLFAWSPSKSVWEEQ-PNKT----IPNLYTISALSWK 278 (1637)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d~-i~i~~~~~~~~~~~~~-~~~~----~~~~~~i~~l~~s 278 (1637)
+|+......... .....+..++|+|||+++++++. ++ +.+|+++.....+... .... ......+..++|+
T Consensus 171 ~~g~~~~~~~~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 171 DAGQLSEQSVLTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp TTSCEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred CCCcEEEeeeEEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 555433221111 12335788999999997776544 44 9999998633322110 0011 1112468899999
Q ss_pred CCCCEE-EEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE
Q psy12802 279 RDGSRI-ACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA 357 (1637)
Q Consensus 279 pdg~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~ 357 (1637)
|||++| ++...++.|.+|++..... . ..+......+..+..++|+|+++++++
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~-----~---------------------~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGH-----L---------------------TLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGC-----E---------------------EEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCc-----E---------------------EEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 999987 4556689999999852210 0 000011111335778999999876655
Q ss_pred -e-CCCcEEEe--eccccceeee
Q psy12802 358 -R-TPDTLLLG--DLHRNLLSEV 376 (1637)
Q Consensus 358 -~-~~~~i~i~--d~~~~~~~~~ 376 (1637)
. .++.+.+| |..++++..+
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEEEE
T ss_pred EEcCCCcEEEEEEeCCCCeEEec
Confidence 4 35889999 5556666543
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.8e-16 Score=208.57 Aligned_cols=260 Identities=10% Similarity=0.037 Sum_probs=161.0
Q ss_pred CCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCC-----CEEEEEEcCCCC-EEEEeCC---
Q psy12802 42 NGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC-----PVTTMVWLADGP-IIYGQSD--- 112 (1637)
Q Consensus 42 ~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~v~~s~~~~-l~~~~~d--- 112 (1637)
.+.......++.|+|||++++++ |++|++||+.++. ......+|.. ....++|||||+ +++++.+
T Consensus 12 ~~~~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 12 KNTYRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ 85 (740)
T ss_dssp HTCSCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred cCcccccccccEECCCCcEEEEc--CCcEEEEECCCCc----eEEEEechhhhhhcccccceEECCCCCEEEEEECCeee
Confidence 34444557789999999988876 8999999998852 1222223322 234589999999 8887765
Q ss_pred ------CcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEE
Q psy12802 113 ------GKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALS 186 (1637)
Q Consensus 113 ------~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~ 186 (1637)
+.+.+||+.+++...+..|...+...+|||||+.|+.++ ++.|++|++.+... ...+..++..
T Consensus 86 ~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~----~~lt~~g~~~------ 154 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS----YRITWTGKED------ 154 (740)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC----EECCSCCBTT------
T ss_pred EEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce----EEEcCCCCcc------
Confidence 567799999999988888888999999999999999885 68899998875311 0000001100
Q ss_pred ecCCeEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCc
Q psy12802 187 WPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNK 264 (1637)
Q Consensus 187 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~ 264 (1637)
.+..|..| .+|.. + .-.....+.|||||+.|+.++.|. +.+|++...... .
T Consensus 155 ----~~~~g~~~---~v~~e--------e------~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~------~ 207 (740)
T 4a5s_A 155 ----IIYNGITD---WVYEE--------E------VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE------S 207 (740)
T ss_dssp ----TEEESBCC---HHHHH--------H------TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST------T
T ss_pred ----ceecCccc---ccccc--------h------hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC------C
Confidence 01000000 00000 0 001234689999999999988766 888887543221 0
Q ss_pred ccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc---cceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCc
Q psy12802 265 TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL---KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY 341 (1637)
Q Consensus 265 ~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 341 (1637)
.+...+..+.+.+.|.. ....+|++||+.+ +..... . .+..+ .. ......
T Consensus 208 --~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~-------------~--~l~~~---~~---~~~~~~ 260 (740)
T 4a5s_A 208 --LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATS-------------I--QITAP---AS---MLIGDH 260 (740)
T ss_dssp --CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCE-------------E--EECCC---HH---HHTSCE
T ss_pred --CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceE-------------E--EecCC---cc---CCCCCe
Confidence 22335677788777753 2223688999976 421000 0 00000 00 001234
Q ss_pred eeeEEEEecCceEEEEe-C----CCcEEEeeccccc
Q psy12802 342 EITDVAIMGNDRYLVAR-T----PDTLLLGDLHRNL 372 (1637)
Q Consensus 342 ~i~~v~~s~~~~~lv~~-~----~~~i~i~d~~~~~ 372 (1637)
.+..++|||||++++.. . +..|.+||+.+++
T Consensus 261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 68899999999866652 1 2268888887765
No 166
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.7e-16 Score=197.62 Aligned_cols=390 Identities=13% Similarity=0.062 Sum_probs=233.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
|..+...|+|++|+.+|.++-... | +...+..++..+...|++++|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~------------p-~~~~~~~la~~~~~~g~~~~A~~~~~---------------- 63 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK------------E-DPVFYSNLSACYVSVGDLKKVVEMST---------------- 63 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC------------C-CHHHHHHHHHHHHHHTCHHHHHHHHH----------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC------------c-cHHHHHhHHHHHHHHhhHHHHHHHHH----------------
Confidence 778899999999999999882211 2 56666667666666666666555444
Q ss_pred ChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCC--------hHHHHHHHHHccCHHHHHHHHH----
Q psy12802 941 VYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGK--------NNKALDTSIKAKQWKKAVQILQ---- 1008 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~--------~~~ai~~~~~~~~~~~A~~l~~---- 1008 (1637)
+++++ .| .....+..+|.++...|++++|+..|.++.. ....+..+.......++.+.+.
T Consensus 64 ---~al~~----~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (514)
T 2gw1_A 64 ---KALEL----KP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135 (514)
T ss_dssp ---HHHHH----CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------
T ss_pred ---HHhcc----Ch-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 33 3445666788888888888888888877621 1112222222111111111110
Q ss_pred ----------------------------------h---------hccccchHHHHHHHHHHHHH---hCCHHHHHHHHHh
Q psy12802 1009 ----------------------------------V---------ITNKQDIAQHVKTLAQHFKT---VKDYKTAEKIYSH 1042 (1637)
Q Consensus 1009 ----------------------------------~---------~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~ 1042 (1637)
. +..|+ ....+..+|..+.. .|++++|+.+|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN-EADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ---------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSC-HHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred HHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCc-HHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 0 00122 35566666666665 6777777777766
Q ss_pred ccCHHHHHHHHHHcCCHHHHHHHHHhhcC----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCH
Q psy12802 1043 CDMHEQIVDMYHQTGQWEKAYAIAEQHLN----VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQY 1118 (1637)
Q Consensus 1043 ~~~~~~~~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~ 1118 (1637)
+...-. . ...+..+ .+....++..+|..+...|++++|+..|.++-.
T Consensus 215 ~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------------- 265 (514)
T 2gw1_A 215 AARLFE------E---------QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-------------- 265 (514)
T ss_dssp HHHHHH------H---------HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------------
T ss_pred HHHHhh------h---------hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------
Confidence 533100 0 0000000 144567777888888888888888888766311
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccC--------HHHHHHHHHhcCCHHHHHHHHHh-----
Q psy12802 1119 ENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNE--------WKLAIKMYRSLNLWEDAYRIALS----- 1185 (1637)
Q Consensus 1119 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~--------~~~~~~~y~~~g~~~~A~~~~~~----- 1185 (1637)
..|. ..++..+|..+...|++++|+.+|.++-. +..++.+|...|++++|+..+++
T Consensus 266 ---------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 266 ---------LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp ---------HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred ---------hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 1122 34445555555555555555555554411 33444455555555555554443
Q ss_pred cCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHH
Q psy12802 1186 NGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNE 1265 (1637)
Q Consensus 1186 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 1265 (1637)
..+..++..++..+...|++++|++.|.++. ...+..+.++..+|..+...|++++
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAK------------------------RKFPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH------------------------HHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHcccCHHHHHHHHHHHHHCCCHHH
Confidence 2344566777777777777777777775541 1134566789999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHh---cCChhhHHHHHHHhCChHHHHHHHH
Q psy12802 1266 AETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFE---NENFSKFETLLLRAHKVDLIIEKYK 1342 (1637)
Q Consensus 1266 A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~~a~~~y~ 1342 (1637)
|+..|.++ +.+..... .......++..+|..+.. .|++++|+..|.++
T Consensus 391 A~~~~~~a------~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a----------- 441 (514)
T 2gw1_A 391 ALKQYDLA------IELENKLD------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA----------- 441 (514)
T ss_dssp HHHHHHHH------HHHHHTSS------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-----------
T ss_pred HHHHHHHH------HHhhhccc------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-----------
Confidence 99999887 43321100 001113478889999988 88888888766432
Q ss_pred HcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch
Q psy12802 1343 MNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1343 ~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~ 1412 (1637)
+++ .|. ...++..+|.++.+.|++++|+..|.++....+
T Consensus 442 --------~~~----~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 442 --------SKL----DPR-------------------SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp --------HHH----CTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred --------HHh----Ccc-------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 222 122 233588999999999999999999999886665
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.6e-16 Score=209.71 Aligned_cols=274 Identities=10% Similarity=-0.018 Sum_probs=186.5
Q ss_pred eeEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCCc------ccceEEEEECCCCCeEEEEECCCeEEEEEcCCC
Q psy12802 14 LQDDVFNLDIVRLRSEGN---------VAGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDD 78 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~~---------d~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~ 78 (1637)
+.+++|||||++|++++. ++.|++||+.+++. ...+.+++|||||++||++. ++.|++|++.++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g 140 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD 140 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence 789999999999999876 68999999987764 35688999999999999886 789999999875
Q ss_pred CCCceeEeeccCCCCCE-----------------EEEEEcCCCC-EEEEeCCC---------------------------
Q psy12802 79 WGDKKVICNKFIQQCPV-----------------TTMVWLADGP-IIYGQSDG--------------------------- 113 (1637)
Q Consensus 79 ~~~~~~~~~~~~~~~~v-----------------~~v~~s~~~~-l~~~~~d~--------------------------- 113 (1637)
. .. .....++...| .+++|||||+ |++++.|.
T Consensus 141 ~--~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 141 P--PF-QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp C--CE-ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred C--cE-EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 1 11 11122333323 4899999999 88876542
Q ss_pred -------cEEEEEcCCCcee---------eecccCCcEEEEEEecCCCeEEEEeCC----CcEEEEE----ecCCCCccc
Q psy12802 114 -------KIKAAHVKANKTQ---------TLYASNSFVVALCLNVRGAGVLSGHAD----GSIVRYY----VTEDASNFD 169 (1637)
Q Consensus 114 -------~v~vwd~~~~~~~---------~~~~~~~~v~~l~~s~~g~~l~s~~~d----g~i~iwd----~~~~~~g~~ 169 (1637)
+|++||+.+++.. .+.+|...+.+++|||||+.+++.... ..|.+|| ..+ |
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~---g-- 292 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT---W-- 292 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS---E--
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC---C--
Confidence 7889999988641 234688889999999998877775433 2488888 544 2
Q ss_pred cccccc----ccCCCCcE-----EEEecCC--eEEE--EecCC--eEEEEeCCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 170 QQQGRV----VQHPVPPY-----ALSWPAG--YILA--AGSDR--IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 170 ~~~~~~----~~~~~~v~-----~~~~~~~--~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
++...+ .+|...+. .+.|+|+ .++. +..+| .|.+||..+.....+. .+...+..+.++ +
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt-----~~~~~v~~~~~~-d 366 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQIT-----SGKWEAINIFRV-T 366 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECS-----CSSSCEEEEEEE-C
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecc-----cCceEEEEEEEE-e
Confidence 444444 36777676 8899984 3333 44555 5666774444345554 234457777777 8
Q ss_pred CCEEEEEecC-----c-EEEEEeCCCCCccccCCC-c-ccCCCcceeEEEEcCCCCEEEEE-ecC--CcEEEEEccccc
Q psy12802 235 GQAVVVGSYD-----N-IKLFAWSPSKSVWEEQPN-K-TIPNLYTISALSWKRDGSRIACG-GLC--GSVELFESVLKR 302 (1637)
Q Consensus 235 g~~l~~~~~d-----~-i~i~~~~~~~~~~~~~~~-~-~~~~~~~i~~l~~spdg~~l~~~-~~d--g~v~iwd~~~~~ 302 (1637)
|+.|+..+.+ + .++|.++........... . ...+...+..+.|+|||++++.. +.. ..+.+||..+++
T Consensus 367 ~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 367 QDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8888777665 4 889988763221000001 1 11144567889999999887743 333 467888876554
No 168
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=4.1e-15 Score=177.74 Aligned_cols=274 Identities=12% Similarity=0.134 Sum_probs=181.3
Q ss_pred EcCCCCEEEEEe----CCCeEEEEEcC--CCC-------cccceEEEEECCCCCeEEEEECC----CeEEEEEcCCCCCC
Q psy12802 19 FNLDIVRLRSEG----NVAGIWAWRGQ--NGR-------KSYVVKGLAFSPDSTKLAVAQSD----NIIFIYKLGDDWGD 81 (1637)
Q Consensus 19 ~spdg~~la~~~----~d~~i~vwd~~--~~~-------h~~~V~~~~~spd~~~la~~~~d----~~i~iw~~~~~~~~ 81 (1637)
..++..++..|+ .++.|++|.+. ++. +...+..++|||||++|++++.+ +.|.+|++....+.
T Consensus 9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 345555666663 35678888664 443 35567789999999999998875 79999998764233
Q ss_pred ceeEeeccCCCCCEEEEEEcCCCC-EEEEe-CCCcEEEEEcCCCce-eee---c-----------ccCCcEEEEEEecCC
Q psy12802 82 KKVICNKFIQQCPVTTMVWLADGP-IIYGQ-SDGKIKAAHVKANKT-QTL---Y-----------ASNSFVVALCLNVRG 144 (1637)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~-~d~~v~vwd~~~~~~-~~~---~-----------~~~~~v~~l~~s~~g 144 (1637)
.+.+.....+...+..+++ +++ +++++ .++.|.+|++.+... ..+ . .+...+.+++|+|||
T Consensus 89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 3344333345567778888 777 55544 688999999975432 111 1 112346889999999
Q ss_pred CeEEEEe-CCCcEEEEEecCCCC----c-cccc----ccccccCCCCcEEEEecCC--eEEEEe-cCCeEEEEe-CCCce
Q psy12802 145 AGVLSGH-ADGSIVRYYVTEDAS----N-FDQQ----QGRVVQHPVPPYALSWPAG--YILAAG-SDRIVTIYE-SDGRV 210 (1637)
Q Consensus 145 ~~l~s~~-~dg~i~iwd~~~~~~----g-~~~~----~~~~~~~~~~v~~~~~~~~--~l~~~~-~d~~i~iwd-~~~~~ 210 (1637)
+++++++ .++.|.+|++..... . . .. ......+...+..++|+|+ .+++++ .++.|.+|| .++..
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKF-LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCC-EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccce-eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 9776655 488999999986421 0 0 00 1112234567889999995 566655 689999999 55543
Q ss_pred --eEEeeccCCCCCCccEEEEEECCCCCEEEEEecC--c-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEE
Q psy12802 211 --HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA 285 (1637)
Q Consensus 211 --~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~ 285 (1637)
+..+.... .+......++|+|||++|+++..+ + |.+|+++.....+.. .........+.+++|+|||++|+
T Consensus 246 ~~~~~~~~~~--~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~--~~~~~~g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 246 DEIQTVAADT--VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK--VGYQLTGIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEEEEESCS--SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE--EEEEECSSCCCEEEECTTSCEEE
T ss_pred EEeEEEecCC--CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE--eeEecCCCCCceEEECCCCCEEE
Confidence 22232211 233457899999999998777665 4 999999743332111 11111234678999999999888
Q ss_pred EEe-cCCcEEEEEcc
Q psy12802 286 CGG-LCGSVELFESV 299 (1637)
Q Consensus 286 ~~~-~dg~v~iwd~~ 299 (1637)
+++ .++.|.+|++.
T Consensus 322 ~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 322 VACRDTNVIQIFERD 336 (361)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEEE
Confidence 877 67899997653
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=5.6e-16 Score=203.74 Aligned_cols=317 Identities=12% Similarity=0.073 Sum_probs=194.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------ccc-----ceEEEEECCCCCeEEEEECC---------CeEE
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSY-----VVKGLAFSPDSTKLAVAQSD---------NIIF 71 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~-----~V~~~~~spd~~~la~~~~d---------~~i~ 71 (1637)
...++.|+|||++++++ |++|++||+.+++ |.. ....++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999999886 8999999998876 221 22448999999999998876 5667
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeec--ccCCcE-------------
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLY--ASNSFV------------- 135 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~--~~~~~v------------- 135 (1637)
+||+.++ + ......|...+..++|||||+ |+++ .++.|++|++.++....+. ++...+
T Consensus 96 ~~d~~~~----~-~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 96 IYDLNKR----Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEETTTT----E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEECCCC----c-EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 9999885 2 223445778899999999999 8777 4689999999988774332 333323
Q ss_pred ----EEEEEecCCCeEEEEeCCC------------------------------------cEEEEEecC---CCCcccccc
Q psy12802 136 ----VALCLNVRGAGVLSGHADG------------------------------------SIVRYYVTE---DASNFDQQQ 172 (1637)
Q Consensus 136 ----~~l~~s~~g~~l~s~~~dg------------------------------------~i~iwd~~~---~~~g~~~~~ 172 (1637)
.++.|||||+.|++++.|. +|++||+.+ ... ...
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~---~~~ 246 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN---ATS 246 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC---CCE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc---ceE
Confidence 3489999999999886432 466777765 310 011
Q ss_pred cccc------cCCCCcEEEEecCC-e-EEEEec----CCeEEEEe-CCCc----ee--EEeeccCCCCCCccE-----EE
Q psy12802 173 GRVV------QHPVPPYALSWPAG-Y-ILAAGS----DRIVTIYE-SDGR----VH--RIFDYTAPHYKEREF-----TV 228 (1637)
Q Consensus 173 ~~~~------~~~~~v~~~~~~~~-~-l~~~~~----d~~i~iwd-~~~~----~~--~~~~~~~~~~~~~~i-----~~ 228 (1637)
..+. +|...+..++|+|+ . ++.... +..|.+|| .+|+ +. ..+... .+...+ ..
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~---~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM---STTGWVGRFRPSE 323 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE---CSSSCSSSSSCCC
T ss_pred EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec---cCCceEccCcCCC
Confidence 2222 37777899999985 3 443322 34799999 6666 22 111001 122222 36
Q ss_pred EEECCCCCEEE-EEec-Cc---EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEe-c----CCcEEEEEc
Q psy12802 229 ACSSPSGQAVV-VGSY-DN---IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-L----CGSVELFES 298 (1637)
Q Consensus 229 ~~~sp~g~~l~-~~~~-d~---i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~----dg~v~iwd~ 298 (1637)
+.|||||+.++ ..+. ++ |.+|+.+.+... ........+..+.+ +|++.|+..+ . .+...+|.+
T Consensus 324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~------~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT------FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE------ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred ceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE------ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 78999999887 6654 33 777776654321 11222334554432 4566655443 3 244555554
Q ss_pred cccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeC----CCcEEEeeccccce
Q psy12802 299 VLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART----PDTLLLGDLHRNLL 373 (1637)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~----~~~i~i~d~~~~~~ 373 (1637)
..... .....++... ...+.....+.|||++++++... ...+.+++..+++.
T Consensus 397 ~~~g~---------------~~~~~lt~~~--------~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 397 QLIDY---------------TKVTCLSCEL--------NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp ETTEE---------------EEEEESSTTT--------STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred ECCCC---------------Ccceeecccc--------CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 21110 0000011000 00123577899999987766532 23566777665543
No 170
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=2.1e-16 Score=188.20 Aligned_cols=267 Identities=9% Similarity=0.028 Sum_probs=177.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc------cc--ceEEEEECCCCCeEEEE-ECCCeEEEEEcCCCCCCceeEe
Q psy12802 16 DDVFNLDIVRLRSEGNVAGIWAWRGQNGRK------SY--VVKGLAFSPDSTKLAVA-QSDNIIFIYKLGDDWGDKKVIC 86 (1637)
Q Consensus 16 ~~~~spdg~~la~~~~d~~i~vwd~~~~~h------~~--~V~~~~~spd~~~la~~-~~d~~i~iw~~~~~~~~~~~~~ 86 (1637)
.+++++++.++++++.++.|++||..+++. .. .+..++|+|||++++++ +.++.|.+||+.++ +...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~----~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC----KNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC----cEEE
Confidence 467899999999999999999999987751 23 58899999999977644 56899999999874 2222
Q ss_pred ec-cCC-----CCCEEEEEEcCCCC-EEEEeCC------------CcEEEEEcCCCce---eeecccCCcEEEEEEecCC
Q psy12802 87 NK-FIQ-----QCPVTTMVWLADGP-IIYGQSD------------GKIKAAHVKANKT---QTLYASNSFVVALCLNVRG 144 (1637)
Q Consensus 87 ~~-~~~-----~~~v~~v~~s~~~~-l~~~~~d------------~~v~vwd~~~~~~---~~~~~~~~~v~~l~~s~~g 144 (1637)
.. ..+ ...+.+++|+|+|+ +++++.+ +.|.+||+.+++. .....+...+.+++|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 159 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence 21 122 23477899999999 7777654 8999999998654 2223344568899999999
Q ss_pred CeEEEEeCCCcEEEEEecCCCCcccccccccccCC-C-----------------------CcEEEEecCCe---EEEEec
Q psy12802 145 AGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHP-V-----------------------PPYALSWPAGY---ILAAGS 197 (1637)
Q Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~-~-----------------------~v~~~~~~~~~---l~~~~~ 197 (1637)
+ +++++ +.|.+||..+. +....+..+. . .+..+.++++. ......
T Consensus 160 ~-l~~~~--~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTG-----KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp C-EEEES--SSEEEECTTTC-----CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred c-EEEcc--CcEEEEeCCCC-----ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 9 66554 34999998763 3333332221 0 22334444210 000001
Q ss_pred CCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECC-CCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEE
Q psy12802 198 DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALS 276 (1637)
Q Consensus 198 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 276 (1637)
...+..+|.....+..+... .....+..++|+| +|+.++++ .+.|.+||+.+.+.. ..+.....+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~------~~~~~~~~~~~~~ 301 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFA---DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI------KAANLDHTYYCVA 301 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE------EEEECSSCCCEEE
T ss_pred ceeEEEEeccCCcEEecccc---cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEE------EEEcCCCCccceE
Confidence 11222345222223333322 2344688999999 99999988 334999998765432 1222234577999
Q ss_pred EcCCCCEEEEEecCCcEEEEEcccccee
Q psy12802 277 WKRDGSRIACGGLCGSVELFESVLKRTI 304 (1637)
Q Consensus 277 ~spdg~~l~~~~~dg~v~iwd~~~~~~~ 304 (1637)
|+|||++|++++.++.|.+||..+++.+
T Consensus 302 ~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ECCCCCEEEEecCCCeEEEEecccccee
Confidence 9999999988888999999999766543
No 171
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=4.7e-16 Score=199.18 Aligned_cols=263 Identities=14% Similarity=0.074 Sum_probs=176.6
Q ss_pred ccceEEEEECCCCCeEEEEEC-CCeEEEEEcCCCCCCceeEeeccCCC-CCEEEEEEcCCCC-EEEEeC---CCcEEEEE
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQS-DNIIFIYKLGDDWGDKKVICNKFIQQ-CPVTTMVWLADGP-IIYGQS---DGKIKAAH 119 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~-l~~~~~---d~~v~vwd 119 (1637)
..+|.+++|||||++||+++. ||++.||++.++ ... ....|. ..+.+++|||| + +++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g----~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG----ETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT----EEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC----CcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 457999999999999998886 999999998653 222 233344 68999999999 8 666554 45556655
Q ss_pred cCC---CceeeecccCCcEEEEEEecCCCe-EEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEE
Q psy12802 120 VKA---NKTQTLYASNSFVVALCLNVRGAG-VLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YIL 193 (1637)
Q Consensus 120 ~~~---~~~~~~~~~~~~v~~l~~s~~g~~-l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~ 193 (1637)
+.. +....+..+. .+...+|+|||+. +++++.++.+.+||+.+. .. ..+..+.. .+++|||+ .++
T Consensus 95 ~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-----~~-~~l~~~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGG-----GL-RELARLPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp EETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETT-----EE-EEEEEESS--CEEEEEEETTEEE
T ss_pred EeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCC-----cE-EEeecCCC--ceEEECCCCCEEE
Confidence 433 2223333332 3446789998875 333344455569999863 22 33333333 78899884 777
Q ss_pred EEecC----CeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc---EEEEEeCCCCCccccCCCcc
Q psy12802 194 AAGSD----RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---IKLFAWSPSKSVWEEQPNKT 265 (1637)
Q Consensus 194 ~~~~d----~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---i~i~~~~~~~~~~~~~~~~~ 265 (1637)
+++.+ +.|.+|| .+|+ ...+. .+...+..++|||||+.|+++..++ |++||+.++... ..
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~-~~~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------~~ 233 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGG-LRVFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE------DL 233 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCC-CEEEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE------EC
T ss_pred EEEEcCCCCeEEEEEcCCCCC-ceEee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE------Ec
Confidence 77766 7899999 4454 44555 3555789999999999999777776 667776654431 12
Q ss_pred cCCCcceeEEE--------EcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEec
Q psy12802 266 IPNLYTISALS--------WKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS 337 (1637)
Q Consensus 266 ~~~~~~i~~l~--------~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 337 (1637)
..+...+..+. |||||..+++++.+|++++|++ ++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-------------------------------- 279 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-------------------------------- 279 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--------------------------------
T ss_pred cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--------------------------------
Confidence 22334455555 9999988899999999999998 43211
Q ss_pred ccCceeeEEEEecCceEEEE-eCC---CcEEEeeccc
Q psy12802 338 QYGYEITDVAIMGNDRYLVA-RTP---DTLLLGDLHR 370 (1637)
Q Consensus 338 ~~~~~i~~v~~s~~~~~lv~-~~~---~~i~i~d~~~ 370 (1637)
.....+.+++|+ +++++++ +++ ..+.+||..+
T Consensus 280 ~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 001257788999 8887776 333 3467777655
No 172
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=2.8e-15 Score=185.76 Aligned_cols=298 Identities=13% Similarity=0.091 Sum_probs=180.4
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
|.....+..+|..+...|++++|+.+|.++... .|+ .+.++..+|.+|...|+++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------------~p~-~~~~~~~l~~~~~~~g~~~ 77 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG------------------------DPD-NYIAYYRRATVFLAMGKSK 77 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------CCc-cHHHHHHHHHHHHHCCCHH
Confidence 555667778999999999999999988775221 444 5778899999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCc--hHH----
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEP--DLA---- 1108 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~--~~a---- 1108 (1637)
+|+..|.++.... |....++..+|..|..+|++++|+..|.++... +..
T Consensus 78 ~A~~~~~~al~~~-------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 132 (450)
T 2y4t_A 78 AALPDLTKVIQLK-------------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKE 132 (450)
T ss_dssp HHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHHHHHhcC-------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 9999888864321 222344455555555555555555555443111 000
Q ss_pred -----------------HHHHHhcCCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHH
Q psy12802 1109 -----------------ISMFKNQRQYENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKM 1169 (1637)
Q Consensus 1109 -----------------i~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~ 1169 (1637)
...|.+.|++++|+..+++... +....++..+|..|...|++++|+.+|.++
T Consensus 133 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------- 203 (450)
T 2y4t_A 133 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA--------- 203 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH---------
Confidence 0012223333333333332111 122345555555555555555555555554
Q ss_pred HHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHH
Q psy12802 1170 YRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEV 1249 (1637)
Q Consensus 1170 y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~ 1249 (1637)
+-..+.+..++..++..+...|++++|++.|.++... .+..+..
T Consensus 204 ------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------~p~~~~~ 247 (450)
T 2y4t_A 204 ------------SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL------------------------DQDHKRC 247 (450)
T ss_dssp ------------HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTTCHHH
T ss_pred ------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCChHHH
Confidence 1122344556677777777777777777777654211 1222222
Q ss_pred ------------HHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCCh---HHHHHHhHHH
Q psy12802 1250 ------------HYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSI---GDILLNQSKC 1314 (1637)
Q Consensus 1250 ------------~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~---~~~~~~~a~~ 1314 (1637)
+..+|..+...|++++|+..|.++ + ...|... ..++..++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~------l-----------------~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV------M-----------------KTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------H-----------------HHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------H-----------------hcCCcchHHHHHHHHHHHHH
Confidence 233477788888888888887776 2 2344422 3467788888
Q ss_pred HHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHc
Q psy12802 1315 EFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQN 1394 (1637)
Q Consensus 1315 ~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 1394 (1637)
+...|++++|+..+.+ ++++ .| .+...+..+|..+...
T Consensus 305 ~~~~g~~~~A~~~~~~-------------------a~~~----~p-------------------~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSE-------------------VLQM----EP-------------------DNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHTTTCHHHHHHHHHH-------------------HHHH----CT-------------------TCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHH-------------------HHHh----Cc-------------------ccHHHHHHHHHHHHHh
Confidence 8888888887766643 2222 12 2234588899999999
Q ss_pred CCHHHHHHHHHhcCCcch
Q psy12802 1395 GEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1395 g~~~~A~~~~~~~~~~~~ 1412 (1637)
|++++|+.+|.++....+
T Consensus 343 ~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp TCHHHHHHHHHHHHTTSS
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 999999999998877666
No 173
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=4.9e-16 Score=178.70 Aligned_cols=382 Identities=13% Similarity=0.137 Sum_probs=168.0
Q ss_pred HHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCCh
Q psy12802 863 LYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVY 942 (1637)
Q Consensus 863 ~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~ 942 (1637)
+.+..|+++.|++++.+. +++.+|..++.++.+.|++++|.+.|.+..++
T Consensus 12 ll~~~~~ld~A~~fae~~-----------------~~~~vWs~La~A~l~~g~~~eAIdsfika~D~------------- 61 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP------------- 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----------------CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH-------------
Confidence 455666777777777766 34568888888887777777776666543222
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCCh-------HHHHHHHHHccCHHHHHHHHHhhccccc
Q psy12802 943 DKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKN-------NKALDTSIKAKQWKKAVQILQVITNKQD 1015 (1637)
Q Consensus 943 ~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~-------~~ai~~~~~~~~~~~A~~l~~~~~~~~~ 1015 (1637)
..+..++..+...|+|++|+.+|..+.+. ...+.+|.+.|+|.++.++++ .|+
T Consensus 62 ----------------~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn- 121 (449)
T 1b89_A 62 ----------------SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPN- 121 (449)
T ss_dssp ---------------------------------------------------------------CHHHHTTTTT---CC--
T ss_pred ----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCc-
Confidence 12335555666777888888866665431 122337788888888877764 343
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
...|..+|..+...|+|++|..+|.++..+..+++++.+.|+|++|++.+++.. .+.++......+...|+|+.|
T Consensus 122 -~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~----~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 122 -NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp ----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC----CchhHHHHHHHHHHcCcHHHH
Confidence 358999999999999999999999999999999999999999999999999883 367888889999999999999
Q ss_pred HHHHHHhC----CchHHHHHHHhcCCHHHHHHHHHhhCC--CchHHHHHHHHHHH--HHccCHHHHHHHHHHccCHHHHH
Q psy12802 1096 ERLYLIIG----EPDLAISMFKNQRQYENMIKLVRNYHP--DLLDTTLLHLAQEC--EESKNYKQAEKYYLDCNEWKLAI 1167 (1637)
Q Consensus 1096 ~~~y~~~~----~~~~ai~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~--~~~g~~~~A~~~y~~a~~~~~~~ 1167 (1637)
........ ....++.+|.+.|+|++|+.++++... +....++..+|..| .+.+++.++++.|...-+..+++
T Consensus 197 ~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~ 276 (449)
T 1b89_A 197 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 276 (449)
T ss_dssp HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH
T ss_pred HHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH
Confidence 77665522 223456779999999999999988654 33345666666655 44667777777777665544444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHH-hcCCCCc
Q psy12802 1168 KMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAK-IGMKSKL 1246 (1637)
Q Consensus 1168 ~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~-~~~~~~~ 1246 (1637)
+.+.+..-| ..+...|.+.++++.|+....+.. ...|++. .++ .......
T Consensus 277 ~~~~~~~~w----------------~e~~~ly~~~~e~d~A~~tm~~h~-----------~~a~~~~--~f~~~~~kv~n 327 (449)
T 1b89_A 277 RAAEQAHLW----------------AELVFLYDKYEEYDNAIITMMNHP-----------TDAWKEG--QFKDIITKVAN 327 (449)
T ss_dssp HHHHTTTCH----------------HHHHHHHHHTTCHHHHHHHHHHST-----------TTTCCHH--HHHHHHHHCSS
T ss_pred HHHHHHHHH----------------HHHHHHHHhhchHHHHHHHHHhCC-----------hhhhhhH--HHHHHHhchhH
Confidence 444433322 223333333333333333222210 0001110 000 0002233
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHH----cCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChh
Q psy12802 1247 EEVHYKYALVLEDNGQFNEAETQFIK----ANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFS 1322 (1637)
Q Consensus 1247 ~~~~~~~a~~~~~~g~~~~A~~~~~~----a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~ 1322 (1637)
.+++++....|.+ ..+.++.-+.. --++.+++.++...+...-+....+...+.+...|-..+-..+.++.+|+
T Consensus 328 ~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 328 VELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp THHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Confidence 4444444444442 22222222222 23445555555555555444444455556666777777778899999988
Q ss_pred hHHHHHHH
Q psy12802 1323 KFETLLLR 1330 (1637)
Q Consensus 1323 ~A~~~~~~ 1330 (1637)
.-......
T Consensus 406 ~lr~si~~ 413 (449)
T 1b89_A 406 ALRTSIDA 413 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76654443
No 174
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.69 E-value=1e-15 Score=181.16 Aligned_cols=262 Identities=9% Similarity=-0.003 Sum_probs=181.8
Q ss_pred CeEEEEECCCeEEEEEcCCCCCCceeEeecc-CCCC-CEEEEEEcCCCC-E-EEEeCCCcEEEEEcCCCce-eeecc-c-
Q psy12802 59 TKLAVAQSDNIIFIYKLGDDWGDKKVICNKF-IQQC-PVTTMVWLADGP-I-IYGQSDGKIKAAHVKANKT-QTLYA-S- 131 (1637)
Q Consensus 59 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~-~v~~v~~s~~~~-l-~~~~~d~~v~vwd~~~~~~-~~~~~-~- 131 (1637)
+++++++.++.|.+||+.++ +.+.... ++.. .+.+++|+|+|+ + ++++.++.|.+||+.+++. ..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCC----cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 47889999999999999874 3332221 2222 478899999998 4 5566688999999999887 33332 2
Q ss_pred ---CCcEEEEEEecCCCeEEEEe------------CCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEE
Q psy12802 132 ---NSFVVALCLNVRGAGVLSGH------------ADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILA 194 (1637)
Q Consensus 132 ---~~~v~~l~~s~~g~~l~s~~------------~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 194 (1637)
...+.+++|+|+|+.+++++ .++.|.+||+.+. +....+. ....+.++.|+|+ .+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~-~~~~~~~~~~s~dg~~l~~ 151 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----SRRKAFE-APRQITMLAWARDGSKLYG 151 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-----EEEEEEE-CCSSCCCEEECTTSSCEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-----cEEEEEe-CCCCcceeEECCCCCEEEE
Confidence 22577899999999998886 5799999999763 3444443 3556788999984 5666
Q ss_pred EecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-------------------------EEE
Q psy12802 195 AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-------------------------IKL 248 (1637)
Q Consensus 195 ~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-------------------------i~i 248 (1637)
+ ++.|.+|| .+++....+.... ...+ +.|+|+|+.+++.+..+ |.+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~---~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQS---WEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTT---TTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred e--CCeEEEEECCCCcEeeeeeccc---cCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence 6 68999999 6777776666432 1122 27899998776655432 356
Q ss_pred EEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCC
Q psy12802 249 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES 328 (1637)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (1637)
||....... ......+...+.+++|+|||++++++ ++.|.+||+.+++....
T Consensus 224 ~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~---------------------- 275 (337)
T 1pby_B 224 MDLETGEMA----MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR---------------------- 275 (337)
T ss_dssp EETTTCCEE----EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE----------------------
T ss_pred EeCCCCCce----EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce----------------------
Confidence 666554321 01112233467789999999998888 79999999976543211
Q ss_pred CCceeEEecccCceeeEEEEecCceEEEE-eCCCcEEEeecccccee
Q psy12802 329 KGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLS 374 (1637)
Q Consensus 329 ~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~~~~~i~i~d~~~~~~~ 374 (1637)
+ ..+..+.+++|+|+++++++ ..++.|.+||+.+++..
T Consensus 276 ------~--~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 276 ------V--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ------E--ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ------e--cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 0 01225678999999875554 67899999999877654
No 175
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.69 E-value=7.9e-15 Score=181.62 Aligned_cols=291 Identities=9% Similarity=-0.012 Sum_probs=176.4
Q ss_pred CCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHH
Q psy12802 897 LENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNA 976 (1637)
Q Consensus 897 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 976 (1637)
|.+...+..++..+.+.|++++|..+|.++ ++. .| .....+..+|..+...|++++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-------------------l~~----~p-~~~~~~~~l~~~~~~~g~~~~ 78 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAA-------------------VDG----DP-DNYIAYYRRATVFLAMGKSKA 78 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHH----CT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------HHh----CC-ccHHHHHHHHHHHHHCCCHHH
Confidence 445566666666666666666665555432 211 33 345566788888888888888
Q ss_pred HHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHH-------H-
Q psy12802 977 AINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHE-------Q- 1048 (1637)
Q Consensus 977 A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~- 1048 (1637)
|+.+|.++... .|+ ...++..+|.+|...|++++|+++|.++.... .
T Consensus 79 A~~~~~~al~~------------------------~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 79 ALPDLTKVIQL------------------------KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp HHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHhc------------------------CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 88888775322 343 56677778888888888888888887764321 0
Q ss_pred ---------------HHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHH
Q psy12802 1049 ---------------IVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMF 1112 (1637)
Q Consensus 1049 ---------------~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~ 1112 (1637)
....|.+.|++++|+..+++... .|....++..+|..|...|++++|+..|.++.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------- 204 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--------- 204 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---------
Confidence 12335555666666666555332 23345566666666666666666666544421
Q ss_pred HhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccC----HHHHHHHHHhcCCHHHHHHHHHhcCC
Q psy12802 1113 KNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNE----WKLAIKMYRSLNLWEDAYRIALSNGG 1188 (1637)
Q Consensus 1113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~----~~~~~~~y~~~g~~~~A~~~~~~~~~ 1188 (1637)
+ .. +....++..+|..|...|++++|+.+|.++-. .......+... ..
T Consensus 205 ----------~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~-------------~~ 256 (450)
T 2y4t_A 205 ----------K----LK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV-------------KK 256 (450)
T ss_dssp ----------H----HH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------------HH
T ss_pred ----------H----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH-------------HH
Confidence 0 11 22357889999999999999999999998821 11110000000 00
Q ss_pred ccchHHHHHHHHHhcCcchHHHHHHHhc------------cHHHHHHHHHhcCChHHHHHHHHhcC--CCCcHHHHHHHH
Q psy12802 1189 QEAVEPVVYLWAKSLGGDSAVRLLNRLS------------LLESCISNACDTYQFDFAFELAKIGM--KSKLEEVHYKYA 1254 (1637)
Q Consensus 1189 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~i~~~~~~~~~~~a~~l~~~~~--~~~~~~~~~~~a 1254 (1637)
......++..+...|++++|++.|.++. .+.....++.+.|++++|+..++... .|..+.++..+|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 0111223444444455555544444421 12233455666666666666666543 566788999999
Q ss_pred HHHHhCCChHHHHHHHHHc
Q psy12802 1255 LVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1255 ~~~~~~g~~~~A~~~~~~a 1273 (1637)
..+...|++++|+..|.++
T Consensus 337 ~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999887
No 176
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=2.4e-14 Score=171.05 Aligned_cols=284 Identities=13% Similarity=0.159 Sum_probs=180.2
Q ss_pred CCCCCeEEEEE----CCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC----CcEEEEEcCC--C
Q psy12802 55 SPDSTKLAVAQ----SDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD----GKIKAAHVKA--N 123 (1637)
Q Consensus 55 spd~~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d----~~v~vwd~~~--~ 123 (1637)
.+...++.+|+ .++.|.+|+++...+....+... +...+..++|+|||+ +++++.+ +.|.+|++.. +
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 34445666664 45789999886543333333333 667788899999999 8877765 7999998875 5
Q ss_pred cee---eecccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCCcccccccccc-----------cCCCCcEEEEec
Q psy12802 124 KTQ---TLYASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDASNFDQQQGRVV-----------QHPVPPYALSWP 188 (1637)
Q Consensus 124 ~~~---~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~g~~~~~~~~~-----------~~~~~v~~~~~~ 188 (1637)
+.. ....+...+..+++ +|+.+++++ .+++|.+|++...+.- ....... .+...+.+++|+
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL--LPASDVIEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB--CSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC--cccceeEEccCCCCCccccCCCcceEEEEC
Confidence 542 33345567778888 888877776 5889999999754210 1111111 123345889999
Q ss_pred CC--eEEEEe-cCCeEEEEe-C-CC-----c-ee-----EEeeccCCCCCCccEEEEEECCCCCEEEEEec-Cc-EEEEE
Q psy12802 189 AG--YILAAG-SDRIVTIYE-S-DG-----R-VH-----RIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLFA 250 (1637)
Q Consensus 189 ~~--~l~~~~-~d~~i~iwd-~-~~-----~-~~-----~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d~-i~i~~ 250 (1637)
|+ .+++++ .++.|.+|+ . .+ + .. ..... .....+..++|+|||+++++++. ++ |.+|+
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV----APGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec----CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 94 455544 588999998 2 22 2 21 12222 23446789999999998888774 55 99999
Q ss_pred eCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEec--CCcEEEEEcc--ccceeeeCcEEEEEecCCeEEEecCCC
Q psy12802 251 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL--CGSVELFESV--LKRTIWKGKFEMIYVSPSQVLVKPLSG 326 (1637)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~--dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (1637)
+..+.............+...+..++|+|||++|+++.. ++.|.+|++. +++..
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---------------------- 297 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT---------------------- 297 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE----------------------
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE----------------------
Confidence 985432110000111122345689999999999876665 4899999984 22211
Q ss_pred CCCCceeEEecccCceeeEEEEecCceEEEE-e-CCCcEEEe--eccccceeee
Q psy12802 327 ESKGRGVILKSQYGYEITDVAIMGNDRYLVA-R-TPDTLLLG--DLHRNLLSEV 376 (1637)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~-~-~~~~i~i~--d~~~~~~~~~ 376 (1637)
.+..... +..+..++|+|+++++++ . .++.+.+| |..++++..+
T Consensus 298 -----~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 298 -----KVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp -----EEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred -----EeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 0100111 346778999999986665 3 57889996 5556666544
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=9.6e-16 Score=185.56 Aligned_cols=264 Identities=11% Similarity=0.076 Sum_probs=174.8
Q ss_pred EEEEcCCCCEEEEEeC-CC--eEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeE
Q psy12802 16 DDVFNLDIVRLRSEGN-VA--GIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVI 85 (1637)
Q Consensus 16 ~~~~spdg~~la~~~~-d~--~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~ 85 (1637)
.++|||||++|++.+. ++ .|++||..+++ +...+.++.|||||++|++++.++.|++||+.++ ....+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g--~~~~~ 117 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL--EENVV 117 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC--CEEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC--cceee
Confidence 3789999999999887 55 49999988765 3334456789999999999999999999999875 22222
Q ss_pred eeccCCCCCEEEEE--EcCCCC-EEEE----------------------eCCCcEEEEEcCCCceeeecccCCcEEEEEE
Q psy12802 86 CNKFIQQCPVTTMV--WLADGP-IIYG----------------------QSDGKIKAAHVKANKTQTLYASNSFVVALCL 140 (1637)
Q Consensus 86 ~~~~~~~~~v~~v~--~s~~~~-l~~~----------------------~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~ 140 (1637)
.. .+...+.... ++|+++ ++.. ..+..|.+||+.+++...+..+...+..+.|
T Consensus 118 ~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 195 (388)
T 3pe7_A 118 YQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIY 195 (388)
T ss_dssp EE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred ee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEE
Confidence 22 3344444444 489999 5532 2347899999999988878788888999999
Q ss_pred ec-CCCeEEEEeCC------CcEEEEEecCCCCcccccccccccCC--CCcEEEEecCC--eEEEEec-CC----eEEEE
Q psy12802 141 NV-RGAGVLSGHAD------GSIVRYYVTEDASNFDQQQGRVVQHP--VPPYALSWPAG--YILAAGS-DR----IVTIY 204 (1637)
Q Consensus 141 s~-~g~~l~s~~~d------g~i~iwd~~~~~~g~~~~~~~~~~~~--~~v~~~~~~~~--~l~~~~~-d~----~i~iw 204 (1637)
|| ||+.|+.++.+ ..|.++|... .....+..+. ..+..+.|+|+ .|+..+. ++ .|.+|
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 196 RPYDDSTVAFCHEGPHDLVDARMWLINEDG------TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp ETTEEEEEEEEECSCTTTSSCSEEEEETTS------CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEEeCCC------CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 99 99999887763 2677777654 2334444444 35778899985 4544333 22 39999
Q ss_pred e-CCCceeEEeeccCCCCCCcc---EEEEEECCCCCEEEEEe---------cCc-EEEEEeCCCCCccccCCCcccCCCc
Q psy12802 205 E-SDGRVHRIFDYTAPHYKERE---FTVACSSPSGQAVVVGS---------YDN-IKLFAWSPSKSVWEEQPNKTIPNLY 270 (1637)
Q Consensus 205 d-~~~~~~~~~~~~~~~~~~~~---i~~~~~sp~g~~l~~~~---------~d~-i~i~~~~~~~~~~~~~~~~~~~~~~ 270 (1637)
| .+|+........ .+... .....|+|||+.|+... .+. |.+||...+... ....+..
T Consensus 270 d~~~g~~~~l~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~ 340 (388)
T 3pe7_A 270 DPETLENRQLTSMP---ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------RVARHDT 340 (388)
T ss_dssp CTTTCCEEEEEEEC---CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE------EEEECCC
T ss_pred ecCCCceEEEEcCC---CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE------EeccccC
Confidence 9 556543222211 00000 11237999999888653 233 888887764321 1111122
Q ss_pred -----------ceeEEEEcCCCCEEEEEe-cCCcEEEEEc
Q psy12802 271 -----------TISALSWKRDGSRIACGG-LCGSVELFES 298 (1637)
Q Consensus 271 -----------~i~~l~~spdg~~l~~~~-~dg~v~iwd~ 298 (1637)
.+.+++|+|||+.|+..+ .+|...+|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 477889999999887655 5777777765
No 178
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.68 E-value=4.3e-15 Score=176.87 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=176.9
Q ss_pred EEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCC-CCCEEEEEEcCCCC-E-EEEeCCCcEEEEEcCCCce-
Q psy12802 50 KGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ-QCPVTTMVWLADGP-I-IYGQSDGKIKAAHVKANKT- 125 (1637)
Q Consensus 50 ~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~-l-~~~~~d~~v~vwd~~~~~~- 125 (1637)
+++++++++..+++++.++.|.+||+.++ +.+.....+ ...+..++|+|+|+ + +++..++.|.+||+.+++.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCC----cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 35678999999999999999999999875 333222222 22578899999998 5 4556789999999999887
Q ss_pred eeecc-c-----CCcEEEEEEecCCCeEEEEeCC------------CcEEEEEecCCCCcccccccccccCCCCcEEEEe
Q psy12802 126 QTLYA-S-----NSFVVALCLNVRGAGVLSGHAD------------GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW 187 (1637)
Q Consensus 126 ~~~~~-~-----~~~v~~l~~s~~g~~l~s~~~d------------g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~ 187 (1637)
..+.. + ...+.+++|+|||+.+++++.+ +.|.+||+.+.... ..+.. ..+...+.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~-~~~~~~~~~~~~ 155 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--KPVRT-FPMPRQVYLMRA 155 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--CCSEE-EECCSSCCCEEE
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--ceeee-ccCCCcccceeE
Confidence 34432 2 2237789999999999998865 89999999863211 11222 234456889999
Q ss_pred cCC-eEEEEecCCeEEEEe-CCCceeEEeeccCCCCC----------------Cc---cEEEEEECCCCCEEE-------
Q psy12802 188 PAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK----------------ER---EFTVACSSPSGQAVV------- 239 (1637)
Q Consensus 188 ~~~-~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~----------------~~---~i~~~~~sp~g~~l~------- 239 (1637)
+|+ .+++++ +.|.+|| .+++.+..+........ .. ....+++++++....
T Consensus 156 s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 156 ADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp CTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 984 555543 4499999 77888777654320000 00 344577776653221
Q ss_pred ----EEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC-CCCEEEEEecCCcEEEEEccccceeeeCcEEEEE
Q psy12802 240 ----VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIY 313 (1637)
Q Consensus 240 ----~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 313 (1637)
.....+ +++|+... ....+.+++|+| ||++++++ ++.|.+||+.+++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~------- 290 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFAD--------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA------- 290 (349)
T ss_dssp EEEEEETTTCCEEEEEEEE--------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-------
T ss_pred eEEEEeccCCcEEeccccc--------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-------
Confidence 111112 34443321 233678999999 99998888 88999999976543211
Q ss_pred ecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEE-EeCCCcEEEeecccccee
Q psy12802 314 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLS 374 (1637)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv-~~~~~~i~i~d~~~~~~~ 374 (1637)
+ ..+..+..++|+|++++++ +..++.|.+||+.+++..
T Consensus 291 ---------------------~--~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 291 ---------------------A--NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ---------------------E--ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ---------------------E--cCCCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 0 0122467899999975444 466799999999876654
No 179
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.67 E-value=1.6e-14 Score=172.57 Aligned_cols=306 Identities=14% Similarity=0.086 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
+.+..+|..+...|++++|+.+|.++... .|+ .+.++..+|.++...|++++|+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------------~p~-~~~~~~~~a~~~~~~~~~~~A~~ 58 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG------------------------DPD-NYIAYYRRATVFLAMGKSKAALP 58 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------------Ccc-cHHHHHHHHHHHHHccCHHHHHH
Confidence 35567888888899998888888775321 444 67788899999999999999988
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchH----HH-----
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDL----AI----- 1109 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~----ai----- 1109 (1637)
.|.++.... |....++..+|..+...|++++|+..|.++-..+. -.
T Consensus 59 ~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 59 DLTKVIALK-------------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-------------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 888764321 22234455555555555555555555554321110 00
Q ss_pred --------------HHHHhcCCHHHHHHHHHhhC--CCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhc
Q psy12802 1110 --------------SMFKNQRQYENMIKLVRNYH--PDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL 1173 (1637)
Q Consensus 1110 --------------~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~ 1173 (1637)
..|...|++++|+..+++.. .+....++..+|..+...|++++|+..|.++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------- 180 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA------------- 180 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-------------
Confidence 11222233333333332211 0122344555555555555555555555544
Q ss_pred CCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHH
Q psy12802 1174 NLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKY 1253 (1637)
Q Consensus 1174 g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 1253 (1637)
+...+.+..++..+|..+...|++++|++.|.++-... .....+...... -.........
T Consensus 181 --------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~---~~~~~~~~~~ 240 (359)
T 3ieg_A 181 --------SKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---------QDHKRCFAHYKQ---VKKLNKLIES 240 (359)
T ss_dssp --------HTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHH---HHHHHHHHHH
T ss_pred --------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------ccchHHHHHHHH---HHHHHHHHHH
Confidence 11123345566777888888888888877776542110 000000000000 0012233455
Q ss_pred HHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCCh---HHHHHHhHHHHHhcCChhhHHHHHHH
Q psy12802 1254 ALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSI---GDILLNQSKCEFENENFSKFETLLLR 1330 (1637)
Q Consensus 1254 a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~ 1330 (1637)
|..+...|++++|+..|.++ ....|... ..++..+|..+...|++++|+..|.+
T Consensus 241 a~~~~~~~~~~~A~~~~~~~-----------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESV-----------------------MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----------------------HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH-----------------------HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77888888888888888876 22234422 23456778888888888877766633
Q ss_pred hCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCc
Q psy12802 1331 AHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNV 1410 (1637)
Q Consensus 1331 a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~ 1410 (1637)
+++. .|. +...+..+|..+...|++++|+.+|.++...
T Consensus 298 -------------------~~~~----~~~-------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 298 -------------------VLQM----EPD-------------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp -------------------HHHH----CTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------------------HHHh----Ccc-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3322 222 3335899999999999999999999998876
Q ss_pred ch
Q psy12802 1411 DV 1412 (1637)
Q Consensus 1411 ~~ 1412 (1637)
.+
T Consensus 336 ~p 337 (359)
T 3ieg_A 336 NE 337 (359)
T ss_dssp CT
T ss_pred CC
Confidence 66
No 180
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=1e-13 Score=172.92 Aligned_cols=321 Identities=9% Similarity=0.014 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHhccCH------HHHHHHHHH----cCCHHHHHHHHHhhcChhhHHHHHHHH
Q psy12802 1017 AQHVKTLAQHFKT----VKDYKTAEKIYSHCDMH------EQIVDMYHQ----TGQWEKAYAIAEQHLNVGEIKATFIQK 1082 (1637)
Q Consensus 1017 ~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~------~~~~~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 1082 (1637)
+..+..||..|.. .+++++|+.+|.++.+. ..+..+|.. .+++++|++.+++..+ ...+..+..+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~L 117 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KGLPQAQQNL 117 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 3344444444444 44444444444443211 123333444 4444444444443322 1223444555
Q ss_pred HHHHHH----cCCHHHHHHHHHHhCCchH--HH----HHHHh----cCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH--
Q psy12802 1083 CKQLEE----ENKFKEAERLYLIIGEPDL--AI----SMFKN----QRQYENMIKLVRNYHPDLLDTTLLHLAQECEE-- 1146 (1637)
Q Consensus 1083 a~~~~~----~g~~~~A~~~y~~~~~~~~--ai----~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~-- 1146 (1637)
|..|.. .+++++|+.+|.++-.... +. .+|.. .+++++|++.+++........++..+|..|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 555555 4555555555555211111 10 12333 34455555555443222334566666766666
Q ss_pred --ccCHHHHHHHHHHcc---C---HHHHHHHHHh----cCCHHHHHHHHHh---cCCccchHHHHHHHHH----hcCcch
Q psy12802 1147 --SKNYKQAEKYYLDCN---E---WKLAIKMYRS----LNLWEDAYRIALS---NGGQEAVEPVVYLWAK----SLGGDS 1207 (1637)
Q Consensus 1147 --~g~~~~A~~~y~~a~---~---~~~~~~~y~~----~g~~~~A~~~~~~---~~~~~~~~~l~~~~~~----~~~~~~ 1207 (1637)
.+++++|..+|.++- + +..+..+|.. .+++++|++.+++ .++..+...++..+.. .+++++
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 667777777776651 1 3344455554 5566666665554 2344455666666655 555556
Q ss_pred HHHHHHHhccH------HHHHHHHHhc-----CChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---ChHHHHHHHHHc
Q psy12802 1208 AVRLLNRLSLL------ESCISNACDT-----YQFDFAFELAKIGMKSKLEEVHYKYALVLEDNG---QFNEAETQFIKA 1273 (1637)
Q Consensus 1208 A~~~~~~~~~~------~~~i~~~~~~-----~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~a 1273 (1637)
|+++|.++-.. ...-.+|... +++++|+..+++......++.++.+|..|...| ++++|++.|.++
T Consensus 278 A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 278 ALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 66655553110 1111223332 444444444444444444555555555555544 445555555544
Q ss_pred CChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHh----cCChhhHHHHHHHhCChHHHHHHHHHcCChHH
Q psy12802 1274 NKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFE----NENFSKFETLLLRAHKVDLIIEKYKMNHMWND 1349 (1637)
Q Consensus 1274 ~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~ 1349 (1637)
+. ...+..+..+|..+.. .+++++|+.+|.++
T Consensus 358 ------~~--------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A------------------ 393 (490)
T 2xm6_A 358 ------AA--------------------KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA------------------ 393 (490)
T ss_dssp ------HH--------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------------
T ss_pred ------HH--------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------------
Confidence 10 1234566666666665 55555555554332
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHH----cCCHHHHHHHHHhcC
Q psy12802 1350 ALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQ----NGEFYNAVECYLKIK 1408 (1637)
Q Consensus 1350 Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~ 1408 (1637)
.+. .+..++..+|..|.+ .+++++|+..|.++.
T Consensus 394 -~~~-------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 394 -AEQ-------------------------GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp -HHT-------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -HhC-------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 110 123358889999999 899999999999876
No 181
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.2e-13 Score=168.44 Aligned_cols=334 Identities=11% Similarity=0.004 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
.....|..+...|++++|+.+|.++... .-.++.....++..+|..|...|++++|+.+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV---------------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------CcccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4457899999999999999998775221 0001111246789999999999999999998
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHH
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYE 1119 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~ 1119 (1637)
|.++ +++.+...+.+....++..+|..+...|++++|+.+|.++ +.++.+.+.
T Consensus 70 ~~~a-------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~-- 122 (406)
T 3sf4_A 70 HHHD-------------------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH------LDISRELND-- 122 (406)
T ss_dssp HHHH-------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHTC--
T ss_pred HHHH-------------------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHhccc--
Confidence 8774 4444444455667889999999999999999999986653 222222221
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHccC--------------------HHHHHHHHHHccCHHHHHHHHHhcCCHHHH
Q psy12802 1120 NMIKLVRNYHPDLLDTTLLHLAQECEESKN--------------------YKQAEKYYLDCNEWKLAIKMYRSLNLWEDA 1179 (1637)
Q Consensus 1120 ~a~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A 1179 (1637)
+.....++..+|..+...|+ +++|+.+|.++ +.++...++....
T Consensus 123 ----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a------l~~~~~~~~~~~~ 186 (406)
T 3sf4_A 123 ----------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN------LSLVTALGDRAAQ 186 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH------HHHHHHTTCHHHH
T ss_pred ----------ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH------HHHHHhccCcHHH
Confidence 12335688999999999999 77777666655 2333333322111
Q ss_pred HHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q psy12802 1180 YRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLED 1259 (1637)
Q Consensus 1180 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~ 1259 (1637)
..++..+|..+...|++++|++.|.++ +..+.+.+. +.....++..+|..|..
T Consensus 187 ---------~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~------------~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 187 ---------GRAFGNLGNTHYLLGNFRDAVIAHEQR------LLIAKEFGD------------KAAERRAYSNLGNAYIF 239 (406)
T ss_dssp ---------HHHHHHHHHHHHHHTBHHHHHHHHHHH------HHHHHHTTC------------HHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHccCHHHHHHHHHHH------HHHHHhcCC------------cHHHHHHHHHHHHHHHH
Confidence 125677888888888888888888554 222222111 12235578899999999
Q ss_pred CCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHH
Q psy12802 1260 NGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIE 1339 (1637)
Q Consensus 1260 ~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~ 1339 (1637)
.|++++|+..|.++ +.+....++ +.....++..+|..+...|++++|+..|
T Consensus 240 ~g~~~~A~~~~~~a------l~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~----------- 290 (406)
T 3sf4_A 240 LGEFETASEYYKKT------LLLARQLKD------------RAVEAQSCYSLGNTYTLLQDYEKAIDYH----------- 290 (406)
T ss_dssp TTCHHHHHHHHHHH------HHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------
T ss_pred cCChHHHHHHHHHH------HHHHHhCcC------------chHHHHHHHHHHHHHHHhCcHHHHHHHH-----------
Confidence 99999999999887 555433221 1223567788899999999988888776
Q ss_pred HHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcchhHHHHHH
Q psy12802 1340 KYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDVNLMVKIL 1419 (1637)
Q Consensus 1340 ~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 1419 (1637)
++|+.+..+... .+.....+..+|.+|...|++++|+.+|.++.
T Consensus 291 --------~~a~~~~~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------- 334 (406)
T 3sf4_A 291 --------LKHLAIAQELND-----------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL----------- 334 (406)
T ss_dssp --------HHHHHHHHHTTC-----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred --------HHHHHHHHhcCC-----------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 444444444210 01112358899999999999999999999765
Q ss_pred HHHHHHHHhccCccchhhhhhhhhhhhhhccCHH
Q psy12802 1420 NEVTQLTLKYLNHDQSYKILPSLVPKLMEFKQYD 1453 (1637)
Q Consensus 1420 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1453 (1637)
++..+.-.......+...++..+...|++.
T Consensus 335 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 335 ----EISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp ----HHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 555444333333445556666666665553
No 182
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=9.7e-14 Score=173.08 Aligned_cols=307 Identities=14% Similarity=0.086 Sum_probs=169.8
Q ss_pred CCChHHHHHHHHHhCCCChHHHHHHHHHHHHh----cccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc
Q psy12802 939 GKVYDKCIDLTRKINPKNVTALEEEWGDHLIE----NKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ 1014 (1637)
Q Consensus 939 ~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~----~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~ 1014 (1637)
.+++++|+..+++............+|..|.. .+++++|+.+|.++ ...+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a--------------------------~~~~ 109 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--------------------------ALKG 109 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--------------------------HHTT
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--------------------------HHCC
Confidence 45555555555444222333344455555555 55555555555443 3333
Q ss_pred chHHHHHHHHHHHHH----hCCHHHHHHHHHhccCH------HHHHHHHHH----cCCHHHHHHHHHhhcChhhHHHHHH
Q psy12802 1015 DIAQHVKTLAQHFKT----VKDYKTAEKIYSHCDMH------EQIVDMYHQ----TGQWEKAYAIAEQHLNVGEIKATFI 1080 (1637)
Q Consensus 1015 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~------~~~~~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 1080 (1637)
.+..+..||..|.. .+++++|++.|+++.+. ..+..+|.. .+++++|++.+++..+. ..+..+.
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~ 187 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-GNVWSCN 187 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHH
Confidence 44455555555555 55556666555554221 223444444 45555555555544322 2345566
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHhCCch--HHH----HHHHh----cCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q psy12802 1081 QKCKQLEE----ENKFKEAERLYLIIGEPD--LAI----SMFKN----QRQYENMIKLVRNYHPDLLDTTLLHLAQECEE 1146 (1637)
Q Consensus 1081 ~~a~~~~~----~g~~~~A~~~y~~~~~~~--~ai----~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~ 1146 (1637)
.+|..|.. .+++++|+++|.++-... .+. .+|.. .+++++|+.++++........++..+|..|..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 66666666 666666666666532211 111 22333 45666666666654443445566666666666
Q ss_pred ----ccCHHHHHHHHHHccC------HHHHHHHHHhc-----CCHHHHHHHHHh---cCCccchHHHHHHHHHhc---Cc
Q psy12802 1147 ----SKNYKQAEKYYLDCNE------WKLAIKMYRSL-----NLWEDAYRIALS---NGGQEAVEPVVYLWAKSL---GG 1205 (1637)
Q Consensus 1147 ----~g~~~~A~~~y~~a~~------~~~~~~~y~~~-----g~~~~A~~~~~~---~~~~~~~~~l~~~~~~~~---~~ 1205 (1637)
.+++++|+.+|.++-+ +..+..+|... +++++|++.+++ .++..+...++..+...| ++
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH
Confidence 6667777777766622 33455555555 666666666544 345556667777766644 45
Q ss_pred chHHHHHHHhcc------HHHHHHHHHh----cCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh----CCChHHHHHHHH
Q psy12802 1206 DSAVRLLNRLSL------LESCISNACD----TYQFDFAFELAKIGMKSKLEEVHYKYALVLED----NGQFNEAETQFI 1271 (1637)
Q Consensus 1206 ~~A~~~~~~~~~------~~~~i~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~ 1271 (1637)
++|+++|.++-. +...-.+|.. .+++++|+..+++......+..+..+|..|.. .+++++|...|.
T Consensus 348 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 348 KKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 666666666321 1122234444 55666666666665555567788888888887 788888888887
Q ss_pred Hc
Q psy12802 1272 KA 1273 (1637)
Q Consensus 1272 ~a 1273 (1637)
+|
T Consensus 428 ~A 429 (490)
T 2xm6_A 428 TA 429 (490)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 183
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=1.5e-13 Score=164.14 Aligned_cols=306 Identities=14% Similarity=0.073 Sum_probs=194.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
|..+...|++++|+.+|.++-. . .|.+...+..++..+...|++++|...|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~---------~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~---------------- 61 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVD---------G---DPDNYIAYYRRATVFLAMGKSKAALPDLT---------------- 61 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---------H---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---------h---CcccHHHHHHHHHHHHHccCHHHHHHHHH----------------
Confidence 6778889999999999988721 1 24566777777666666665555555443
Q ss_pred ChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHH----HHHHHHHccCHHHHHHHHHhhccccch
Q psy12802 941 VYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNK----ALDTSIKAKQWKKAVQILQVITNKQDI 1016 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~----ai~~~~~~~~~~~A~~l~~~~~~~~~~ 1016 (1637)
+++++ . |.....+..+|.++...|++++|+.+|.++..... -...+...+ .+. .
T Consensus 62 ---~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~----~ 119 (359)
T 3ieg_A 62 ---KVIAL----K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV----------KAD----E 119 (359)
T ss_dssp ---HHHHH----C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH----------HHH----H
T ss_pred ---HHHHh----C-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH----------HHH----H
Confidence 23322 3 33445777899999999999999999988744210 001110000 000 1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhccC--------HHHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHH
Q psy12802 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHCDM--------HEQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLE 1087 (1637)
Q Consensus 1017 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~ 1087 (1637)
...+..+|..+...|++++|+++|.++.. +.....+|.+.|++++|+..+++... .|..+.++..+|..+.
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11234457788888888888888887643 23456777777777777777776433 3556778888999999
Q ss_pred HcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHH
Q psy12802 1088 EENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAI 1167 (1637)
Q Consensus 1088 ~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~ 1167 (1637)
..|++++|+..|.++-.. ......+...+.... .......+|..+...|++++|+..|.++
T Consensus 200 ~~~~~~~A~~~~~~a~~~---------~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~------- 260 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKL---------DQDHKRCFAHYKQVK---KLNKLIESAEELIRDGRYTDATSKYESV------- 260 (359)
T ss_dssp HHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred HcCCHHHHHHHHHHHHhh---------CccchHHHHHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHH-------
Confidence 999999998887763111 001111111111110 1223456688899999999999988887
Q ss_pred HHHHhcCCHHHHHHHHHhcCCc----cchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCC
Q psy12802 1168 KMYRSLNLWEDAYRIALSNGGQ----EAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMK 1243 (1637)
Q Consensus 1168 ~~y~~~g~~~~A~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~ 1243 (1637)
+...+.+. ..+..+|..+...|++++|++.|.++ ++ ..
T Consensus 261 --------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-------------------~~-----~~ 302 (359)
T 3ieg_A 261 --------------MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV-------------------LQ-----ME 302 (359)
T ss_dssp --------------HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HH-----HC
T ss_pred --------------HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-------------------HH-----hC
Confidence 11111111 12345666677777777777666543 11 14
Q ss_pred CCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1244 SKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1244 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|..+.++..+|..+...|++++|+..|.++
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567889999999999999999999999988
No 184
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=8.9e-15 Score=176.98 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=155.3
Q ss_pred EEECCCCCeEEEEEC-CC--eEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCcee-
Q psy12802 52 LAFSPDSTKLAVAQS-DN--IIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQ- 126 (1637)
Q Consensus 52 ~~~spd~~~la~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~- 126 (1637)
++|||||++|++++. ++ .|.+||+.++ ........+...+.++.|+|||+ |++++.++.|++||+.+++..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC----EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC----ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 789999999998887 66 4777888764 33333334555555678999999 999998999999999999874
Q ss_pred eecccCCcEEEEE--EecCCCeEEEEe----------------------CCCcEEEEEecCCCCcccccccccccCCCCc
Q psy12802 127 TLYASNSFVVALC--LNVRGAGVLSGH----------------------ADGSIVRYYVTEDASNFDQQQGRVVQHPVPP 182 (1637)
Q Consensus 127 ~~~~~~~~v~~l~--~s~~g~~l~s~~----------------------~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v 182 (1637)
....+...+.... ++|+|+.++... .++.|.+||+.+. ....+..+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~~~~l~~~~~~~ 190 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------ESTVILQENQWL 190 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------CEEEEEEESSCE
T ss_pred eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------ceEEeecCCccc
Confidence 3444445454444 489999887432 3467899998863 334555677788
Q ss_pred EEEEecC-C--eEEEEecC------CeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC-c-----EE
Q psy12802 183 YALSWPA-G--YILAAGSD------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-----IK 247 (1637)
Q Consensus 183 ~~~~~~~-~--~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-~-----i~ 247 (1637)
..+.|+| + .++.++.+ ..|.++|.++.....+... .....+..++|||||+.|+..+.. + |.
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence 9999999 5 56555543 3788888666655555532 111357788999999988665442 1 77
Q ss_pred EEEeCCCCCccccCCCcccCCC----cceeEEEEcCCCCEEEEE---------ecCCcEEEEEccccc
Q psy12802 248 LFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIACG---------GLCGSVELFESVLKR 302 (1637)
Q Consensus 248 i~~~~~~~~~~~~~~~~~~~~~----~~i~~l~~spdg~~l~~~---------~~dg~v~iwd~~~~~ 302 (1637)
+||+.++.... ....... .....+.|+|||+.|+.. ..++.|++||+.+++
T Consensus 268 ~~d~~~g~~~~----l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 268 SADPETLENRQ----LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EECTTTCCEEE----EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEecCCCceEE----EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 77776554211 0011110 012223799999987754 456689999987654
No 185
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=3.1e-14 Score=177.51 Aligned_cols=383 Identities=13% Similarity=-0.004 Sum_probs=209.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHH
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEP---YLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYR 937 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~ 937 (1637)
|.++...|++++|+.+|.++ ..+..... .-+.....+..++..+...|++++|..+|+
T Consensus 58 g~~~~~~G~~~eAl~~~~kA------l~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~------------- 118 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKA------EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD------------- 118 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH-------------
T ss_pred HHHHHHCCCHHHHHHHHHHH------HHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH-------------
Confidence 78899999999999999887 33333211 123445566667766666666666655543
Q ss_pred hCCChHHHHHHHHHhC---CCChHHHHHHHHHHHHh--cccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcc
Q psy12802 938 KGKVYDKCIDLTRKIN---PKNVTALEEEWGDHLIE--NKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITN 1012 (1637)
Q Consensus 938 ~~~~~~~A~~l~~~~~---~~~~~~l~~~~~~~l~~--~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~ 1012 (1637)
+|+++.+... .+....+....|..+.. .++|++|+.+|+++... +
T Consensus 119 ------ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------------------------~ 168 (472)
T 4g1t_A 119 ------KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------------------------K 168 (472)
T ss_dssp ------HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------------------------S
T ss_pred ------HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------------------------C
Confidence 4555555432 23455666677776655 45789999988775332 5
Q ss_pred ccchHHHHHHHHHHHHH---hCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHc
Q psy12802 1013 KQDIAQHVKTLAQHFKT---VKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEE 1089 (1637)
Q Consensus 1013 ~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~ 1089 (1637)
|+ ++.++..++.++.. .+++++|++.|.++ +++ .|....++..+|..+...
T Consensus 169 p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a-------------------l~l------~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 169 PK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQA-------------------IRL------NPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp TT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH-------------------HHH------CSSCHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH-------------------hhc------CCcchHHHHHHHHHHHHH
Confidence 55 67788887777543 45556666555543 221 133455666666655544
Q ss_pred ----CCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHH
Q psy12802 1090 ----NKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKL 1165 (1637)
Q Consensus 1090 ----g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~ 1165 (1637)
|++++|+++|.++ . ...| ....++..+|..|...|++++|+..|.++
T Consensus 223 ~~~~~~~~~a~~~~~~a-------------------l----~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~a----- 273 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEA-------------------L----EKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKA----- 273 (472)
T ss_dssp C------CHHHHHHHHH-------------------H----HHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred HhhhhHHHHHHHHHHHH-------------------H----HhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHH-----
Confidence 4555555554332 1 1123 33578899999999999999999999998
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhc--CC
Q psy12802 1166 AIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIG--MK 1243 (1637)
Q Consensus 1166 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~--~~ 1243 (1637)
+-..+.+..++..+|..|...+....+..... .+... ...+.+++|+..+++. ..
T Consensus 274 ----------------l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~-~~~~~------~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 274 ----------------LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG-MYGKR------KLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp ----------------HHHSTTCHHHHHHHHHHHHHHHHHHHHC-------CHH------HHHHHHHHHHHHHHHHHHHC
T ss_pred ----------------HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHH------HHHhhHHHHHHHHHHHhhcC
Confidence 33333444455555555543222111100000 00000 0111223333333322 14
Q ss_pred CCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCC--ChHHHHHHhHHHH-HhcCC
Q psy12802 1244 SKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPT--SIGDILLNQSKCE-FENEN 1320 (1637)
Q Consensus 1244 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~a~~~-~~~~~ 1320 (1637)
+.....+..+|..|...|++++|+..|.++ +.+ .+. ....++..++..+ ...|+
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka------L~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKE------FSK-----------------ELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH------HHS-----------------CCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHH------Hhc-----------------CCCChHHHHHHHHHHHHHHHHCCC
Confidence 556677888999999999999999999987 221 222 1123455555543 46678
Q ss_pred hhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHH
Q psy12802 1321 FSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNA 1400 (1637)
Q Consensus 1321 ~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1400 (1637)
+++|+..|.++- .+......+...+..++ ..+. ......|.+..++..+|.+|..+|++++|
T Consensus 388 ~~~Ai~~y~kal------~i~~~~~~~~~~~~~l~-----------~~~~-~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 388 EDKAIHHFIEGV------KINQKSREKEKMKDKLQ-----------KIAK-MRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHH------HSCCCCHHHHHHHHHHH-----------HHHH-HHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHH------hcCcccHHHHHHHHHHH-----------HHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 888877775531 11100000011111111 1111 12224567778899999999999999999
Q ss_pred HHHHHhcCCcc
Q psy12802 1401 VECYLKIKNVD 1411 (1637)
Q Consensus 1401 ~~~~~~~~~~~ 1411 (1637)
+++|.++.+..
T Consensus 450 ~~~y~kALe~~ 460 (472)
T 4g1t_A 450 DEDSERGLESG 460 (472)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 99999988543
No 186
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.61 E-value=6.9e-14 Score=166.78 Aligned_cols=280 Identities=14% Similarity=0.079 Sum_probs=174.6
Q ss_pred eEEEEECC--CeEEEEEcCCCCCCceeEeec-cCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcC-CCceeeecccC--
Q psy12802 60 KLAVAQSD--NIIFIYKLGDDWGDKKVICNK-FIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVK-ANKTQTLYASN-- 132 (1637)
Q Consensus 60 ~la~~~~d--~~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~-~~~~~~~~~~~-- 132 (1637)
++++|+.. +.|.+|+++...+....+... ......+..++|+|+|+ +++++.+ .|.+|++. +++...+..+.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 568887765432222222221 12334678899999999 8787777 99999997 77763222221
Q ss_pred CcEEEEEEecCCCe--EEEEe-------------CCCcEEEEEecCCCCcccccccccc----cCCCCcEEEEecCC--e
Q psy12802 133 SFVVALCLNVRGAG--VLSGH-------------ADGSIVRYYVTEDASNFDQQQGRVV----QHPVPPYALSWPAG--Y 191 (1637)
Q Consensus 133 ~~v~~l~~s~~g~~--l~s~~-------------~dg~i~iwd~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~--~ 191 (1637)
+.+.+++|+|||+. +++++ .+|++.+|++...+ .....+. .+...+.+++|+|+ .
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG----KLEKNVQNYEYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC----CEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC----cCcceEeeEEeCCCCcceEEEECCCCCE
Confidence 23556899999995 44553 68999999997532 3322222 25678999999995 5
Q ss_pred EEEEe-cCCeEEEEe-C-CCceeE--EeeccCCCCCCccEEEEEECCCCCEEEEEec-Cc-EEEEEeCCCCCcccc--CC
Q psy12802 192 ILAAG-SDRIVTIYE-S-DGRVHR--IFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLFAWSPSKSVWEE--QP 262 (1637)
Q Consensus 192 l~~~~-~d~~i~iwd-~-~~~~~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d~-i~i~~~~~~~~~~~~--~~ 262 (1637)
++++. .++.|.+|| . +|+... .+... .+...+..++|+|||+++++++. ++ +.+|+++........ ..
T Consensus 159 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~---~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLASGEVELVGSVDAP---DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECS---STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEECCCCCEEEeeeEecC---CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 66554 368999999 4 566532 23211 12456899999999999988875 44 999998753322110 00
Q ss_pred CcccC-----CCc------ceeEEE-EcCCCCEEEEEecCC------cEEEEEcc-ccceeeeCcEEEEEecCCeEEEec
Q psy12802 263 NKTIP-----NLY------TISALS-WKRDGSRIACGGLCG------SVELFESV-LKRTIWKGKFEMIYVSPSQVLVKP 323 (1637)
Q Consensus 263 ~~~~~-----~~~------~i~~l~-~spdg~~l~~~~~dg------~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~ 323 (1637)
..... +.. .+..++ |+|||++|++++.++ +|.+|++. +++....
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~----------------- 298 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ----------------- 298 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE-----------------
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe-----------------
Confidence 01111 111 578999 999999987766432 89999985 3322100
Q ss_pred CCCCCCCceeEEecccCceeeEEEEec---CceEEEE-eC-CCcEEEeeccccce
Q psy12802 324 LSGESKGRGVILKSQYGYEITDVAIMG---NDRYLVA-RT-PDTLLLGDLHRNLL 373 (1637)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~v~~s~---~~~~lv~-~~-~~~i~i~d~~~~~~ 373 (1637)
.......+..+..++|+| +|+++++ .. +++|.+|+++...+
T Consensus 299 ---------~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 299 ---------LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp ---------EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred ---------eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 000001122345678999 7777766 33 48999999876543
No 187
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=6.2e-15 Score=176.99 Aligned_cols=288 Identities=12% Similarity=0.041 Sum_probs=185.2
Q ss_pred HHHhCCChHHHHH-HHHHh---C---CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHH
Q psy12802 935 CYRKGKVYDKCID-LTRKI---N---PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQIL 1007 (1637)
Q Consensus 935 ~y~~~~~~~~A~~-l~~~~---~---~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~ 1007 (1637)
+|.-.+++++|++ .+.+. . |.........+|..+...|++++|+.+|.++...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------------------- 93 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-------------------- 93 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------
Confidence 4444566666665 44432 1 2112334557888888899988888888775322
Q ss_pred HhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHH
Q psy12802 1008 QVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLE 1087 (1637)
Q Consensus 1008 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~ 1087 (1637)
.|. .+.++..+|.+|...|++++|+++|.++.... |....++..+|..|.
T Consensus 94 ----~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 94 ----DPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-------------------------PDNQTALMALAVSFT 143 (368)
T ss_dssp ----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHH
T ss_pred ----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------------------------CCCHHHHHHHHHHHH
Confidence 444 67788999999999999999998888763221 334567777888888
Q ss_pred HcCCHHHHHHHHHHhCCchH-----------------------HHHHHHhcCCHHHHHHHHHhh---CCCc-hHHHHHHH
Q psy12802 1088 EENKFKEAERLYLIIGEPDL-----------------------AISMFKNQRQYENMIKLVRNY---HPDL-LDTTLLHL 1140 (1637)
Q Consensus 1088 ~~g~~~~A~~~y~~~~~~~~-----------------------ai~~~~~~~~~~~a~~~~~~~---~~~~-~~~~~~~l 1140 (1637)
.+|++++|+..|.++-.... .+..+...|++++|+..+++. .|.. ...++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 88888888888776311100 122223666666666666653 2221 35677777
Q ss_pred HHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHH
Q psy12802 1141 AQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLES 1220 (1637)
Q Consensus 1141 a~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 1220 (1637)
|..+...|++++|+.+|.++ +...+.+..++..+|..+...|++++|++.|.++-
T Consensus 224 ~~~~~~~g~~~~A~~~~~~a---------------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---- 278 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAA---------------------LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL---- 278 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHHH---------------------HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Confidence 77777777777777777776 22233445567778888888888888887776541
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhC
Q psy12802 1221 CISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHD 1300 (1637)
Q Consensus 1221 ~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~ 1300 (1637)
+ ..|..+.++..+|..|...|++++|+..|.++ +.+........ .. .
T Consensus 279 ---------------~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~------~~-~ 325 (368)
T 1fch_A 279 ---------------E-----LQPGYIRSRYNLGISCINLGAHREAVEHFLEA------LNMQRKSRGPR------GE-G 325 (368)
T ss_dssp ---------------H-----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHTC-------------C
T ss_pred ---------------H-----hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHhCCCCCCcc------cc-c
Confidence 1 14567889999999999999999999999887 55443211000 00 1
Q ss_pred CCChHHHHHHhHHHHHhcCChhhHHHHHHH
Q psy12802 1301 PTSIGDILLNQSKCEFENENFSKFETLLLR 1330 (1637)
Q Consensus 1301 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 1330 (1637)
+...+.++..++..+...|++++|...+.+
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 223478899999999999999999887753
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=9.5e-15 Score=177.41 Aligned_cols=261 Identities=9% Similarity=0.053 Sum_probs=173.5
Q ss_pred eeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCC------cccc-eEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCce
Q psy12802 14 LQDDVFNLDIVRLRSEGNV---AGIWAWRGQNGR------KSYV-VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~~d---~~i~vwd~~~~~------h~~~-V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~ 83 (1637)
+.+++|||||++|+..... ..|++||..+++ +... ...+.|||||++|+.++.++.|++|++.++ ..+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~--~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL--EEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC--CEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC--CcE
Confidence 6788999999999887543 469999988765 1222 334789999999999999999999999874 122
Q ss_pred eEeeccCCCCCEEE-------------------EEEcCCCC-EEEE-----eCCCcEEEEEcCCCceeeecccCCcEEEE
Q psy12802 84 VICNKFIQQCPVTT-------------------MVWLADGP-IIYG-----QSDGKIKAAHVKANKTQTLYASNSFVVAL 138 (1637)
Q Consensus 84 ~~~~~~~~~~~v~~-------------------v~~s~~~~-l~~~-----~~d~~v~vwd~~~~~~~~~~~~~~~v~~l 138 (1637)
.+.. .+...... +.|+|+++ ++++ ..+..|.+||+.+++...+..+...+..+
T Consensus 116 ~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~ 193 (396)
T 3c5m_A 116 VIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHP 193 (396)
T ss_dssp EEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEE
T ss_pred EEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccc
Confidence 2222 12222222 35788888 5543 46678999999999886666778889999
Q ss_pred EEec-CCCeEEEEeCC------CcEEEEEecCCCCcccccccccccC--CCCcEEEEecCC--eEEEEecC-----CeEE
Q psy12802 139 CLNV-RGAGVLSGHAD------GSIVRYYVTEDASNFDQQQGRVVQH--PVPPYALSWPAG--YILAAGSD-----RIVT 202 (1637)
Q Consensus 139 ~~s~-~g~~l~s~~~d------g~i~iwd~~~~~~g~~~~~~~~~~~--~~~v~~~~~~~~--~l~~~~~d-----~~i~ 202 (1637)
.|+| +|+.|+..+.+ ..|.+||+... ....+..+ ...+..+.|+|+ .|+.++.+ +.|.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCC------ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 9999 88877776653 35778887542 22233333 235778899984 56665543 4599
Q ss_pred EEe-CCCceeEEeeccCCCCCCccEEEEEECC-CCCEEEEEec----------------Cc-EEEEEeCCCCCccccCCC
Q psy12802 203 IYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSY----------------DN-IKLFAWSPSKSVWEEQPN 263 (1637)
Q Consensus 203 iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~----------------d~-i~i~~~~~~~~~~~~~~~ 263 (1637)
+|| .+++........ ... +.|+| ||+.+++++. +. |.+||...+...
T Consensus 268 ~~d~~~g~~~~l~~~~-------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~------ 333 (396)
T 3c5m_A 268 KANPETLENEEVMVMP-------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ------ 333 (396)
T ss_dssp EECTTTCCEEEEEECC-------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC------
T ss_pred EEECCCCCeEEeeeCC-------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE------
Confidence 999 555543322211 133 89999 9998887542 23 888887654321
Q ss_pred cccCCCc-----------ceeEEEEcCCCCEEEEEec-CCcEEEEEc
Q psy12802 264 KTIPNLY-----------TISALSWKRDGSRIACGGL-CGSVELFES 298 (1637)
Q Consensus 264 ~~~~~~~-----------~i~~l~~spdg~~l~~~~~-dg~v~iwd~ 298 (1637)
....+.. .+..+.|+|||+.|+..+. ++...+|.+
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1111111 2566899999998876664 566556554
No 189
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.8e-13 Score=170.45 Aligned_cols=345 Identities=9% Similarity=-0.050 Sum_probs=187.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhc---ChhhHHHHHHHHHHHHHHcCCH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHL---NVGEIKATFIQKCKQLEEENKF 1092 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~a~~~~~~g~~ 1092 (1637)
...+|+.||.++...|++++|++.|.++. ++.++.. ..+....+|.++|.+|..+|++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl-------------------~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAE-------------------ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 45679999999999999999999998753 3333221 1345577899999999999999
Q ss_pred HHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhC---CCchHHHHHHHHHHHHH--ccCHHHHHHHHHHccCHHHHH
Q psy12802 1093 KEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYH---PDLLDTTLLHLAQECEE--SKNYKQAEKYYLDCNEWKLAI 1167 (1637)
Q Consensus 1093 ~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~la~~~~~--~g~~~~A~~~y~~a~~~~~~~ 1167 (1637)
++|+.+|.++ +++..... ....+.++..+|..+.. .++|++|+.+|+++
T Consensus 111 ~~A~~~~~ka-------------------~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka------- 164 (472)
T 4g1t_A 111 SDVQIYVDKV-------------------KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA------- 164 (472)
T ss_dssp HHHHHHHHHH-------------------HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHH-------------------HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH-------
Confidence 9999986653 22222221 12345677777766655 45799999999988
Q ss_pred HHHHhcCCHHHHHHHHHhcCCccchHHHHHHH---HHhcCcchHHHHHHHhccHH----HH--------HHHHHhcCChH
Q psy12802 1168 KMYRSLNLWEDAYRIALSNGGQEAVEPVVYLW---AKSLGGDSAVRLLNRLSLLE----SC--------ISNACDTYQFD 1232 (1637)
Q Consensus 1168 ~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~----~~--------i~~~~~~~~~~ 1232 (1637)
+-..+.++.++..++..+ ...++.++|++.|.++-.++ .+ ..++...+.++
T Consensus 165 --------------l~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 165 --------------LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp --------------HHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred --------------HHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence 222222333333333332 22233444444444422110 00 01112234455
Q ss_pred HHHHHHHhcC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHH
Q psy12802 1233 FAFELAKIGM--KSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLN 1310 (1637)
Q Consensus 1233 ~a~~l~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 1310 (1637)
+|+.++++.. .+..+.++..+|..|...|++++|+..|.++ +. ..|+ .+.++..
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~-----------------~~p~-~~~~~~~ 286 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA------LE-----------------YIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HH-----------------HSTT-CHHHHHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH------HH-----------------hCCC-hHHHHHH
Confidence 5555554432 5667778888888888888888888888776 11 1222 2233333
Q ss_pred hHHHHHh-------------------cCChhhHHHHHHHhC--------ChHHHHHHHHHcCChHHHHHHHhhhCCCChh
Q psy12802 1311 QSKCEFE-------------------NENFSKFETLLLRAH--------KVDLIIEKYKMNHMWNDALRVCGEYVPSKLP 1363 (1637)
Q Consensus 1311 ~a~~~~~-------------------~~~~~~A~~~~~~a~--------~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~ 1363 (1637)
+|..+.. .+.+++|+..|.++. ........|...|++++|+...++.+.....
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 3333221 122344444444321 1123334455666666666665543211000
Q ss_pred HHHHHHHHHHhcccccchHHHHHHHHH-HHHcCCHHHHHHHHHhcCCcchh---------HHHHHHHHHHHHHHhccCcc
Q psy12802 1364 LLQQEYEKEINTNISKDIHSLITQARQ-WEQNGEFYNAVECYLKIKNVDVN---------LMVKILNEVTQLTLKYLNHD 1433 (1637)
Q Consensus 1364 ~l~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~ 1433 (1637)
.. .....+..++.. +.+.|++++|+..|.++....+. .+.++..+++...+
T Consensus 367 ~~-------------~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p------ 427 (472)
T 4g1t_A 367 PV-------------AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG------ 427 (472)
T ss_dssp HH-------------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred Ch-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC------
Confidence 00 001124455544 45789999999999998876651 22222333333222
Q ss_pred chhhhhhhhhhhhhhccCHHHHHHHHhcc
Q psy12802 1434 QSYKILPSLVPKLMEFKQYDLAVRVYLNI 1462 (1637)
Q Consensus 1434 ~~~~~~~~~~~~l~~~~~~~~A~~~y~~~ 1462 (1637)
..+++...+|..+...|++++|++.|.++
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC---------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22467788899999888888888766654
No 190
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=7.4e-14 Score=166.55 Aligned_cols=235 Identities=8% Similarity=0.086 Sum_probs=161.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCc------c--cceEEEEECCCCCe--EEEEE-------------CCC
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQ-NGRK------S--YVVKGLAFSPDSTK--LAVAQ-------------SDN 68 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~-~~~h------~--~~V~~~~~spd~~~--la~~~-------------~d~ 68 (1637)
.+..++|||||++|++++.+ .|.+|++. +++. . +.+.+++|+|||++ ++++. .+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 57789999999999988877 99999986 5541 1 23556889999995 44543 689
Q ss_pred eEEEEEcCCCCCCceeEeec-cCCCCCEEEEEEcCCCC-EEEEe-CCCcEEEEEcC-CCcee---eec--ccCCcEEEEE
Q psy12802 69 IIFIYKLGDDWGDKKVICNK-FIQQCPVTTMVWLADGP-IIYGQ-SDGKIKAAHVK-ANKTQ---TLY--ASNSFVVALC 139 (1637)
Q Consensus 69 ~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~-l~~~~-~d~~v~vwd~~-~~~~~---~~~--~~~~~v~~l~ 139 (1637)
++.+|++.........+... ..+...+.+++|+|||+ ++++. .++.|.+|++. +++.. .+. .|...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 99999997421111112111 12456799999999999 66654 46899999998 77652 222 2466799999
Q ss_pred EecCCCeEEEEeC-CCcEEEEEecCCCCccccc------ccccc----cCCC------CcEEEE-ecCC--eEEEEecC-
Q psy12802 140 LNVRGAGVLSGHA-DGSIVRYYVTEDASNFDQQ------QGRVV----QHPV------PPYALS-WPAG--YILAAGSD- 198 (1637)
Q Consensus 140 ~s~~g~~l~s~~~-dg~i~iwd~~~~~~g~~~~------~~~~~----~~~~------~v~~~~-~~~~--~l~~~~~d- 198 (1637)
|+|||+++++++. +++|.+|++.... | .. +..+. +|.. .+..++ |+|+ .+++++.+
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~-g--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPAT-H--MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTT-C--CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCC-C--cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999888775 7899999886421 1 22 11221 1222 488999 9995 56555432
Q ss_pred C-----eEEEEe-C-CCceeEEee-ccCCCCCCccEEEEEECC---CCCEEEEEecC-c-EEEEEeCCC
Q psy12802 199 R-----IVTIYE-S-DGRVHRIFD-YTAPHYKEREFTVACSSP---SGQAVVVGSYD-N-IKLFAWSPS 254 (1637)
Q Consensus 199 ~-----~i~iwd-~-~~~~~~~~~-~~~~~~~~~~i~~~~~sp---~g~~l~~~~~d-~-i~i~~~~~~ 254 (1637)
+ .|.+|+ . +|+...... .. .+...+..++|+| ||++|++++.+ + |.+|+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~---~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSP---TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEE---CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeee---cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 899999 3 566543211 11 1222455789999 89999999875 4 999998764
No 191
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=2.4e-13 Score=160.10 Aligned_cols=275 Identities=15% Similarity=0.086 Sum_probs=191.8
Q ss_pred CCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCH--------HHHHHHHHhCCChHHHHHHHHHh--CCCChHHHHHHHH
Q psy12802 896 LLENHDVVSQIVKGLIKNESYIKAGQIYEFTNEN--------EKALECYRKGKVYDKCIDLTRKI--NPKNVTALEEEWG 965 (1637)
Q Consensus 896 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~--------~~a~~~y~~~~~~~~A~~l~~~~--~~~~~~~l~~~~~ 965 (1637)
.+.+.+.+...+..+...|++++|..+|++.... .....++...|++++|+.++.+. ..|.....+..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4566777778888888888888888888764221 23445666667777777666554 2233344556677
Q ss_pred HHHHhcc-cHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Q psy12802 966 DHLIENK-QYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCD 1044 (1637)
Q Consensus 966 ~~l~~~~-~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 1044 (1637)
..+...| ++++|+.+|.++... .|. .+..+..+|..+...|++++|+..|.++.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL------------------------EKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT------------------------CTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh------------------------CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777 677777776654332 343 56678889999999999999999998874
Q ss_pred CH--------HHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhc
Q psy12802 1045 MH--------EQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQ 1115 (1637)
Q Consensus 1045 ~~--------~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~ 1115 (1637)
.. ..+..+|...|++++|++.+++... .|....++..+|..+..+|++++|+..|.++
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------- 219 (330)
T 3hym_B 153 QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA------------- 219 (330)
T ss_dssp HHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH-------------
Confidence 32 3367778888888888888877543 3556778888999999999999988886553
Q ss_pred CCHHHHHHHHHhhC----CCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccc
Q psy12802 1116 RQYENMIKLVRNYH----PDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEA 1191 (1637)
Q Consensus 1116 ~~~~~a~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~ 1191 (1637)
++...... .+....++..+|..+...|++++|+.+|.++ +.....+..+
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------------~~~~~~~~~~ 272 (330)
T 3hym_B 220 ------LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA---------------------LVLIPQNAST 272 (330)
T ss_dssp ------HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHSTTCSHH
T ss_pred ------HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HhhCccchHH
Confidence 22221111 1333578999999999999999999999998 3333445666
Q ss_pred hHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q psy12802 1192 VEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLED 1259 (1637)
Q Consensus 1192 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~ 1259 (1637)
+..+|..+...|++++|++.|.++ ....|..+..+..++..++.
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~a------------------------l~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTA------------------------LGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT------------------------TTTCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH------------------------HccCCCchHHHHHHHHHHHH
Confidence 777888887777777777777654 12355667788888887753
No 192
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.57 E-value=1.8e-13 Score=178.52 Aligned_cols=285 Identities=12% Similarity=0.026 Sum_probs=180.0
Q ss_pred CCCCceeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCC-------cccceE---------EEEEC--CCCCe-EEEEEC-
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSE--GNVAGIWAWRGQNGR-------KSYVVK---------GLAFS--PDSTK-LAVAQS- 66 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~--~~d~~i~vwd~~~~~-------h~~~V~---------~~~~s--pd~~~-la~~~~- 66 (1637)
.|...+..++||+++.++++. +.++...||....++ +...+. ...|+ |||++ |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 356789999999998777777 557788888853322 333444 56565 99999 876654
Q ss_pred CCeEEEEEcCCCC-CCceeEeecc--CCCCCEEEEEEcCCCC-EEEEeCC----------CcEEEEEcCC------Ccee
Q psy12802 67 DNIIFIYKLGDDW-GDKKVICNKF--IQQCPVTTMVWLADGP-IIYGQSD----------GKIKAAHVKA------NKTQ 126 (1637)
Q Consensus 67 d~~i~iw~~~~~~-~~~~~~~~~~--~~~~~v~~v~~s~~~~-l~~~~~d----------~~v~vwd~~~------~~~~ 126 (1637)
+..|.+|++.... +..+.+.... .|...+.+++|||||+ |++++.+ ..|++||+.+ ++..
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 4556666654001 1122221110 1567789999999999 8887766 5899999998 6777
Q ss_pred eec-ccCCcEEEEEEecCCCeEEEEeCC--------CcEEEEEecC-CCCcccccccccccCCCCcEEEEecCC--eEEE
Q psy12802 127 TLY-ASNSFVVALCLNVRGAGVLSGHAD--------GSIVRYYVTE-DASNFDQQQGRVVQHPVPPYALSWPAG--YILA 194 (1637)
Q Consensus 127 ~~~-~~~~~v~~l~~s~~g~~l~s~~~d--------g~i~iwd~~~-~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 194 (1637)
.+. .+...+.+++|||||+.|++++.+ ..|++||+.. ...+ .......+|...+..+.|+|+ .+++
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~--~~~~l~~~~~~~~~~~~~spdg~l~~~ 258 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA--DTRTLLGGPEEAIAQAEWAPDGSLIVA 258 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE--EEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc--ccEEeCCCCCceEcceEECCCCeEEEE
Confidence 777 777788899999999999988755 3799999983 2110 122223345788999999984 5556
Q ss_pred EecCC--eEEEEeC-CCceeEEeeccCCCC---CCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccC
Q psy12802 195 AGSDR--IVTIYES-DGRVHRIFDYTAPHY---KEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 267 (1637)
Q Consensus 195 ~~~d~--~i~iwd~-~~~~~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~ 267 (1637)
+..++ .|.+||. +++.......+.... -...+..++|+|+++++++++. + ++||.++...... .....
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~----~~l~~ 333 (662)
T 3azo_A 259 TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL----VDAAG 333 (662)
T ss_dssp ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE----EECCS
T ss_pred ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE----EEecC
Confidence 66677 6666674 555443332211100 0001467899999999999988 7 8888666433221 11122
Q ss_pred CCcceeEEEEcCCCCE--EEEEecCCc--EEEEEcccc
Q psy12802 268 NLYTISALSWKRDGSR--IACGGLCGS--VELFESVLK 301 (1637)
Q Consensus 268 ~~~~i~~l~~spdg~~--l~~~~~dg~--v~iwd~~~~ 301 (1637)
+...+..+ |++++.. +++++.+.. |.++|..++
T Consensus 334 ~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 334 PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 34456655 1445544 444555544 444455444
No 193
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=3.1e-12 Score=155.70 Aligned_cols=351 Identities=9% Similarity=0.005 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhhcccCCCCC----CchHHHHHHHHHHhcCHHHHHH
Q psy12802 730 GMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDP----LQCPELWARMAILNKQFKVAEG 805 (1637)
Q Consensus 730 ~~w~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~a~~~~~~~~A~~ 805 (1637)
..|..+|..+...++++.|..+|...-.. .|.. ...+..+|.++...|++++|..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 68 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV---------------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------CcccHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45778899999999999999888665332 1111 2345677888888999999988
Q ss_pred HHHhcCcHHHHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHhCCHHH
Q psy12802 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSK 885 (1637)
Q Consensus 806 ~~~~~~~~~~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~g~~~~Ai~~y~~~~~~~~ 885 (1637)
.| ..++.+....++. +.....+... +.++...|++++|+.+|.++-
T Consensus 69 ~~------~~al~~~~~~~~~--------------~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al---- 114 (406)
T 3sf4_A 69 YH------HHDLTLARTIGDQ--------------LGEAKASGNL----------GNTLKVLGNFDEAIVCCQRHL---- 114 (406)
T ss_dssp HH------HHHHHHHHHTTCH--------------HHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHH----
T ss_pred HH------HHHHHHHHhcccc--------------HHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHH----
Confidence 87 5555554444432 2222223222 778889999999999988773
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCCc-------------HHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHh
Q psy12802 886 ACNLVQNEPYLLENHDVVSQIVKGLIKNES-------------YIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKI 952 (1637)
Q Consensus 886 a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~-------------~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~ 952 (1637)
.+....+..+.....+..++..+...|+ +++|... ++.|+..|. +|+.++...
T Consensus 115 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~------~~~A~~~~~------~al~~~~~~ 180 (406)
T 3sf4_A 115 --DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA------LQAAVDFYE------ENLSLVTAL 180 (406)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH------HHHHHHHHH------HHHHHHHHT
T ss_pred --HHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH------HHHHHHHHH------HHHHHHHhc
Confidence 3333221111123344555555555555 1111110 344444443 555555554
Q ss_pred C-CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Q psy12802 953 N-PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVK 1031 (1637)
Q Consensus 953 ~-~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g 1031 (1637)
. ++.....+..+|.++...|++++|+.+|.++ +.+.....++.....++..+|..|...|
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-------------------LLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH-------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-------------------HHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 2 2344556778999999999999999987664 3333333333334567999999999999
Q ss_pred CHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHH
Q psy12802 1032 DYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISM 1111 (1637)
Q Consensus 1032 ~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~ 1111 (1637)
++++|+.+|.++ +++.....+......++..+|..|..+|++++|+.+|.++ +.+
T Consensus 242 ~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------~~~ 296 (406)
T 3sf4_A 242 EFETASEYYKKT-------------------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------LAI 296 (406)
T ss_dssp CHHHHHHHHHHH-------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH
T ss_pred ChHHHHHHHHHH-------------------HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH------HHH
Confidence 999999988765 3333343344556788999999999999999999986653 333
Q ss_pred HHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccc
Q psy12802 1112 FKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEA 1191 (1637)
Q Consensus 1112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~ 1191 (1637)
..+.+. +.....++..+|..|...|++++|..+|.++ +.+....+...... .+
T Consensus 297 ~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~---------~~ 349 (406)
T 3sf4_A 297 AQELND------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH------LEISREVGDKSGEL---------TA 349 (406)
T ss_dssp HHHTTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHTTCHHHHH---------HH
T ss_pred HHhcCC------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcCCcchh---------HH
Confidence 332222 1223567889999999999999999999987 22233333322222 24
Q ss_pred hHHHHHHHHHhcCcch-HHHHHHHhccHHH
Q psy12802 1192 VEPVVYLWAKSLGGDS-AVRLLNRLSLLES 1220 (1637)
Q Consensus 1192 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~ 1220 (1637)
+..++..+...|+... +.........++.
T Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 379 (406)
T 3sf4_A 350 RLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379 (406)
T ss_dssp HHHHHHHHHHHHTTSCC-------------
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 5677888888887643 3444443333333
No 194
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.1e-12 Score=159.89 Aligned_cols=300 Identities=11% Similarity=0.054 Sum_probs=206.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc---chHHHHHHHHHHHHHhCCHHHHH
Q psy12802 961 EEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ---DIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 961 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+|..+...|++++|+.+|.++... .|+ ....++..+|..|...|++++|+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 106 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA------------------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh------------------------cccChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 346888888899999998888765221 222 12357899999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
.+|.++ +++++...+.+....++..+|..|...|++++|+.+|.++ +.++.+.++
T Consensus 107 ~~~~~a-------------------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~ 161 (411)
T 4a1s_A 107 QYHKHD-------------------LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH------LTLARQLGD 161 (411)
T ss_dssp HHHHHH-------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHTC
T ss_pred HHHHHH-------------------HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHhhc
Confidence 988774 4444444455677889999999999999999999996663 333322221
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccC-----------------HHHHHHHHHHccCHHHHHHHHHhcCCHHHHH
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKN-----------------YKQAEKYYLDCNEWKLAIKMYRSLNLWEDAY 1180 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~ 1180 (1637)
.+....++..+|..|...|+ +++|+.+|.++ +.++...++...
T Consensus 162 ------------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a------l~~~~~~~~~~~-- 221 (411)
T 4a1s_A 162 ------------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN------LKLMRDLGDRGA-- 221 (411)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH------HHHHHHHTCHHH--
T ss_pred ------------hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH------HHHHHHcCCHHH--
Confidence 12345688999999999999 66666666554 222222222111
Q ss_pred HHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Q psy12802 1181 RIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDN 1260 (1637)
Q Consensus 1181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~ 1260 (1637)
...++..+|..+...|++++|++.|.++. ..+.+.+. .......+..+|..|...
T Consensus 222 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~------------~~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 222 -------QGRACGNLGNTYYLLGDFQAAIEHHQERL------RIAREFGD------------RAAERRANSNLGNSHIFL 276 (411)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHTC------------HHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHcCChHHHHHHHHHHH------HHHHhcCC------------cHHHHHHHHHHHHHHHHC
Confidence 11256778888899999999988886542 22222111 112345788899999999
Q ss_pred CChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHH
Q psy12802 1261 GQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEK 1340 (1637)
Q Consensus 1261 g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~ 1340 (1637)
|++++|+..|.++ +.+....++ +.....++..+|..+...|++++|+.+|
T Consensus 277 g~~~~A~~~~~~a------l~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~------------ 326 (411)
T 4a1s_A 277 GQFEDAAEHYKRT------LALAVELGE------------REVEAQSCYSLGNTYTLLHEFNTAIEYH------------ 326 (411)
T ss_dssp TCHHHHHHHHHHH------HHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred cCHHHHHHHHHHH------HHHHHHcCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 9999999999887 555433222 1123567888999999999998888776
Q ss_pred HHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy12802 1341 YKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIK 1408 (1637)
Q Consensus 1341 y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 1408 (1637)
++|++++.+.. . ......++..+|..|...|++++|+.+|.++.
T Consensus 327 -------~~al~~~~~~~-~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 327 -------NRHLAIAQELG-D----------------RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp -------HHHHHHHHHHT-C----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHCC-C----------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444421 0 01122358889999999999999999999876
No 195
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.56 E-value=3.6e-13 Score=158.59 Aligned_cols=277 Identities=11% Similarity=0.048 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
+....|..+...|++++|+.+|.++... .|. ....+..++.++...|++++|+.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------------~p~-~~~~~~~~~~~~~~~~~~~~A~~~ 78 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK------------------------DPF-HASCLPVHIGTLVELNKANELFYL 78 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CTTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------CCC-ChhhHHHHHHHHHHhhhHHHHHHH
Confidence 4456777888888888888877664221 333 445667777888888888888877
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHhCCchHHHHHHHhcCCH
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEEN-KFKEAERLYLIIGEPDLAISMFKNQRQY 1118 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~y~~~~~~~~ai~~~~~~~~~ 1118 (1637)
|.++... .|..+.++..+|..+...| ++++|+..|.++-..
T Consensus 79 ~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------------- 120 (330)
T 3hym_B 79 SHKLVDL-------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------------- 120 (330)
T ss_dssp HHHHHHH-------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHh-------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-------------
Confidence 7765321 1444678888999999999 899998887663211
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHH
Q psy12802 1119 ENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYL 1198 (1637)
Q Consensus 1119 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~ 1198 (1637)
. +....++..+|..+...|++++|+.+|.++ +.........+..++..
T Consensus 121 ----------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 121 ----------E-KTYGPAWIAYGHSFAVESEHDQAMAAYFTA---------------------AQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp ----------C-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHH---------------------HHHTTTCSHHHHHHHHH
T ss_pred ----------C-CccHHHHHHHHHHHHHccCHHHHHHHHHHH---------------------HHhccccHHHHHHHHHH
Confidence 1 223567889999999999999999999888 33334445566667777
Q ss_pred HHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHH
Q psy12802 1199 WAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKE 1278 (1637)
Q Consensus 1199 ~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 1278 (1637)
+...|++++|++.|.++ ....+..+.++..+|..+...|++++|+..|.++
T Consensus 169 ~~~~~~~~~A~~~~~~a------------------------l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----- 219 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQA------------------------LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA----- 219 (330)
T ss_dssp HHHTTCHHHHHHHHHHH------------------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred HHHHhhHHHHHHHHHHH------------------------HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH-----
Confidence 77777777777777554 1234566889999999999999999999999887
Q ss_pred HHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhC
Q psy12802 1279 AISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYV 1358 (1637)
Q Consensus 1279 ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~ 1358 (1637)
+.+....++ ...+...+.++..+|..+...|++++|+..|.+ ++++.
T Consensus 220 -~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------------a~~~~---- 266 (330)
T 3hym_B 220 -LEKIKAIGN---------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ-------------------ALVLI---- 266 (330)
T ss_dssp -HHHHTTTSC---------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHS----
T ss_pred -HHHhhhccc---------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------HHhhC----
Confidence 444322111 111234467899999999999999988877744 33221
Q ss_pred CCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch
Q psy12802 1359 PSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1359 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~ 1412 (1637)
|. +...+..+|..+...|++++|+.+|.++....+
T Consensus 267 ~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 267 PQ-------------------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TT-------------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred cc-------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 22 233588999999999999999999999986655
No 196
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.7e-12 Score=158.31 Aligned_cols=312 Identities=10% Similarity=0.065 Sum_probs=203.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHH
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENH----DVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECY 936 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y 936 (1637)
|..+...|++++|+.+|.++... . |.+. .++..++..+... |+++.|+..|
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~---------~---~~~~~~~~~~~~~lg~~~~~~-------------g~~~~A~~~~ 109 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQA---------G---TEDLRTLSAIYSQLGNAYFYL-------------GDYNKAMQYH 109 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------C---CSCHHHHHHHHHHHHHHHHHH-------------TCHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh---------c---ccChhHHHHHHHHHHHHHHHC-------------CCHHHHHHHH
Confidence 77888999999999999887221 1 3344 2344455444444 4445555554
Q ss_pred HhCCChHHHHHHHHHhC-CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccc
Q psy12802 937 RKGKVYDKCIDLTRKIN-PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQD 1015 (1637)
Q Consensus 937 ~~~~~~~~A~~l~~~~~-~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~ 1015 (1637)
. +|+++++... ++.....+..+|.++...|++++|+.+|.++ +++.+...++..
T Consensus 110 ~------~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~ 164 (411)
T 4a1s_A 110 K------HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH-------------------LTLARQLGDRLS 164 (411)
T ss_dssp H------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHHTCHHH
T ss_pred H------HHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------HHHHHHhhchHH
Confidence 4 5555555542 2444567778999999999999999998764 333333333323
Q ss_pred hHHHHHHHHHHHHHhCC----------HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKD----------YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQ 1085 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~ 1085 (1637)
...++..+|..|...|+ +++|...|.++. +.+ ++|+++.+...+.+....++..+|..
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~------~~~------~~al~~~~~~~~~~~~~~~~~~la~~ 232 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV------EFY------QENLKLMRDLGDRGAQGRACGNLGNT 232 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH------HHH------HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH------HHH------HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66789999999999999 444443333322 111 22555555555556677899999999
Q ss_pred HHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHH
Q psy12802 1086 LEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKL 1165 (1637)
Q Consensus 1086 ~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~ 1165 (1637)
|..+|++++|+.+|.++ +.++...+.. .....++..+|..|...|++++|+.+|.++-.
T Consensus 233 ~~~~g~~~~A~~~~~~a------l~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--- 291 (411)
T 4a1s_A 233 YYLLGDFQAAIEHHQER------LRIAREFGDR------------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLA--- 291 (411)
T ss_dssp HHHTTCHHHHHHHHHHH------HHHHHHHTCH------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---
T ss_pred HHHcCChHHHHHHHHHH------HHHHHhcCCc------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---
Confidence 99999999999986653 3322222211 22345789999999999999999999988722
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q psy12802 1166 AIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSK 1245 (1637)
Q Consensus 1166 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~ 1245 (1637)
+....+..... ..++..+|..+...|++++|+++|.++. ....+.+. ...
T Consensus 292 ---~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~------------~~~ 341 (411)
T 4a1s_A 292 ---LAVELGEREVE---------AQSCYSLGNTYTLLHEFNTAIEYHNRHL------AIAQELGD------------RIG 341 (411)
T ss_dssp ---HHHHTTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHTC------------HHH
T ss_pred ---HHHHcCCHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHCCC------------hHH
Confidence 22222221111 2245678888888899998888886542 22222211 223
Q ss_pred cHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHH
Q psy12802 1246 LEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWEN 1291 (1637)
Q Consensus 1246 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~ 1291 (1637)
...++..+|..|...|++++|...|.++ +.++...++...
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~ 381 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQH------LQLAXXXXXXXX 381 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH------HHHHhhcccchh
Confidence 4568888999999999999999999998 666544443333
No 197
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.56 E-value=1.8e-12 Score=148.80 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=167.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEE-CCCCCeEEEEEC-CCeEEEEEcCC
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAF-SPDSTKLAVAQS-DNIIFIYKLGD 77 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~-spd~~~la~~~~-d~~i~iw~~~~ 77 (1637)
..+..++++|+|.++++...++.|.+||..... +...+.++++ .++++.+++... ++.|.+|+...
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g 109 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 109 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC
Confidence 568899999999998888888999999976321 2346889999 577766665543 88999999433
Q ss_pred CCCCceeEee-ccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceeeec--ccCCcEEEEEEecCCCeEEEEeCC
Q psy12802 78 DWGDKKVICN-KFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLY--ASNSFVVALCLNVRGAGVLSGHAD 153 (1637)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~l~~s~~g~~l~s~~~d 153 (1637)
+.+.. ...+...+.+++++|+|+ +++...++.|.+||..+.....+. .+...+.+++++|+|+.+++.+.+
T Consensus 110 -----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 110 -----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 22222 223456789999999999 666677899999997654444443 455678999999999988888889
Q ss_pred CcEEEEEecCCCCcccccccccccC--CCCcEEEEecCC--eEEEEecCC-eEEEEeCCCceeEEeeccCCCCCCccEEE
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRVVQH--PVPPYALSWPAG--YILAAGSDR-IVTIYESDGRVHRIFDYTAPHYKEREFTV 228 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~~~~--~~~v~~~~~~~~--~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 228 (1637)
+.|.+||... ..+..+..+ ...+..++++++ .+++...++ .|.+||.+|+.+..+..+ .....+..
T Consensus 185 ~~i~~~~~~g------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~~~~ 255 (286)
T 1q7f_A 185 HCVKVFNYEG------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK---VKHAQCFD 255 (286)
T ss_dssp TEEEEEETTC------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES---SCCSCEEE
T ss_pred CEEEEEcCCC------CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc---CCCCccee
Confidence 9999999753 444444332 367899999874 444555565 999999889888888753 22335789
Q ss_pred EEECCCCCEEEEEecCc-EEEEEeCC
Q psy12802 229 ACSSPSGQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 229 ~~~sp~g~~l~~~~~d~-i~i~~~~~ 253 (1637)
++++|+|+++++ +.++ |++|++..
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEccc
Confidence 999999987777 4566 99999764
No 198
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=8.1e-13 Score=172.90 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=166.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCc------ccceEEEEECCCCCeEEEEECCCe-----------
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVA-----GIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQSDNI----------- 69 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~-----~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~~d~~----------- 69 (1637)
..+..++|||||++|+.+..++ .|++||+.+++. ...+.+++|||||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 4688999999999999875533 899999998872 223678999999999999887766
Q ss_pred -----EEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeC-----CCcEEEEEcCC------C--ceeeecc
Q psy12802 70 -----IFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQS-----DGKIKAAHVKA------N--KTQTLYA 130 (1637)
Q Consensus 70 -----i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~-----d~~v~vwd~~~------~--~~~~~~~ 130 (1637)
|++|++.++......+.....|...+.++.|||||+ +++++. +..|++||+.+ + ....+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 999999875322234433334566788999999999 766553 56899999987 5 3466777
Q ss_pred cCCcEEEEEEecCCCeEEEEeCC----CcEEEEEecCCCCcccccccccccCCC--CcEEEEecC-C-eEEEEecCCe--
Q psy12802 131 SNSFVVALCLNVRGAGVLSGHAD----GSIVRYYVTEDASNFDQQQGRVVQHPV--PPYALSWPA-G-YILAAGSDRI-- 200 (1637)
Q Consensus 131 ~~~~v~~l~~s~~g~~l~s~~~d----g~i~iwd~~~~~~g~~~~~~~~~~~~~--~v~~~~~~~-~-~l~~~~~d~~-- 200 (1637)
+...+.. .|+|+|+.|+..+.+ +.|.+||+.+... .....+..|.. .+..+.|++ + .+++...++.
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE---SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG---GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 7666655 589999988877653 3599999876421 12345555544 577889985 4 5556667774
Q ss_pred EEEEeC-CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEec--Cc---EEEEEeCCC
Q psy12802 201 VTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY--DN---IKLFAWSPS 254 (1637)
Q Consensus 201 i~iwd~-~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--d~---i~i~~~~~~ 254 (1637)
|.+||. +|+.+..+.. +...+..++++|+++.++.... .. +.+||+.++
T Consensus 361 l~~~~~~~g~~~~~l~~-----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 361 LQLHDLATGALLKIFPL-----EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEETTTCCEEEEECC-----CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEEECCCCCEEEecCC-----CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 556674 7887777764 3447888999999987664422 22 666776543
No 199
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=1e-12 Score=156.00 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=171.4
Q ss_pred CceeEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCCcc--cceEEEEECCCCCeEEEEECC---Ce--EEEEEc
Q psy12802 12 NVLQDDVFNLDIVRLRSEG---------NVAGIWAWRGQNGRKS--YVVKGLAFSPDSTKLAVAQSD---NI--IFIYKL 75 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~---------~d~~i~vwd~~~~~h~--~~V~~~~~spd~~~la~~~~d---~~--i~iw~~ 75 (1637)
..+..+.+ ||++++... .++.|++||+.+++.. ..+.+++|||||++|+.++.+ +. |.+|++
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~ 92 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADL 92 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEEESCEEEEECTTSSEEEEEEEETTTTEEEEEEEET
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEcccCCCeEECCCCCEEEEEEeccCCCcceEEEEEC
Confidence 45678888 999998753 2567999999887632 467889999999999987654 34 667777
Q ss_pred CCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeC---------------------------CCcEEEEEcCCCce-e
Q psy12802 76 GDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQS---------------------------DGKIKAAHVKANKT-Q 126 (1637)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~---------------------------d~~v~vwd~~~~~~-~ 126 (1637)
.++ ....+. .+.. +.++.|+|||+ |++++. ...|.+||+.+++. .
T Consensus 93 ~~g--~~~~l~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 166 (347)
T 2gop_A 93 ETL--SSKKIL---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE 166 (347)
T ss_dssp TTT--EEEEEE---EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred CCC--ceEEEE---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence 653 222222 2233 99999999999 777653 25799999999987 6
Q ss_pred eecccCCcEEEEEEecCCCeEEEEeCCC-------cEEEEEecCCCCcccccccccccCCCCcEEEEecC--CeEEEEec
Q psy12802 127 TLYASNSFVVALCLNVRGAGVLSGHADG-------SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA--GYILAAGS 197 (1637)
Q Consensus 127 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg-------~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 197 (1637)
.+.. . .+..+.|+||| .+++++.++ ...+|.+.+ | . ...+..+ ..+..+ +| ..++.++.
T Consensus 167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~--~-~~~l~~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---G--K-EEKMFEK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---T--E-EEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---C--c-eEEeccC-cceeeE--CCCCCEEEEEEc
Confidence 6655 4 78899999999 777776542 445665552 2 2 2334444 445544 65 36766664
Q ss_pred C--------CeEEEEeCCCceeEEeeccCCCCCCccEEE-EEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccC
Q psy12802 198 D--------RIVTIYESDGRVHRIFDYTAPHYKEREFTV-ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 267 (1637)
Q Consensus 198 d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~ 267 (1637)
+ ..|.+|| +++...... .+...+.. +.|+ +| .+++++.++ +++| ++.+ .. .....
T Consensus 235 ~~~~~~~~~~~l~~~d-~~~~~~l~~-----~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-----~~~~~ 299 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD-GKEVMGILD-----EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-----KPIAK 299 (347)
T ss_dssp CSSSCCCSSCEEEEEC-SSCEEESST-----TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-----EEEEC
T ss_pred cccCCccccceEEEEC-CCceEeccc-----cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-----EEEec
Confidence 3 4788888 665433222 24556776 8999 88 888888888 8999 8732 11 22233
Q ss_pred CCcceeEEEEcCCCCEEEEEecCCcE-EEEEcc
Q psy12802 268 NLYTISALSWKRDGSRIACGGLCGSV-ELFESV 299 (1637)
Q Consensus 268 ~~~~i~~l~~spdg~~l~~~~~dg~v-~iwd~~ 299 (1637)
+...|.+++|+| ..+++++.++.. .+|.+.
T Consensus 300 ~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 300 GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 456899999999 677777777665 777764
No 200
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.54 E-value=7.7e-14 Score=169.34 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=153.7
Q ss_pred cceEEEEECCCCCeEEEEECC---CeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 47 YVVKGLAFSPDSTKLAVAQSD---NIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
..+.+++|||||++|+.++.. ..|.+|++.++ +.......+......+.|+|||+ |++++.++.|++||+.+
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ----QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT----EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC----cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC
Confidence 347788999999999877543 46888888764 22222222222233478999999 88999899999999999
Q ss_pred Cceeeecc-cCCcEEE-------------------EEEecCCCeEEEE-----eCCCcEEEEEecCCCCccccccccccc
Q psy12802 123 NKTQTLYA-SNSFVVA-------------------LCLNVRGAGVLSG-----HADGSIVRYYVTEDASNFDQQQGRVVQ 177 (1637)
Q Consensus 123 ~~~~~~~~-~~~~v~~-------------------l~~s~~g~~l~s~-----~~dg~i~iwd~~~~~~g~~~~~~~~~~ 177 (1637)
++...+.. +...... +.|+|+|+.++++ ..+..|.+||+.+. . ...+..
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-----~-~~~~~~ 185 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-----E-LEVIHQ 185 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-----C-EEEEEE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC-----c-EEeecc
Confidence 88744433 3332222 3567788776654 35678999998763 2 233445
Q ss_pred CCCCcEEEEecC-C--eEEEEecC------CeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC----
Q psy12802 178 HPVPPYALSWPA-G--YILAAGSD------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---- 244 (1637)
Q Consensus 178 ~~~~v~~~~~~~-~--~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---- 244 (1637)
+...+..+.|+| + .++..+.+ ..|.+||..+.....+... .....+..++|+|||+.|+.++.+
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCccccceEECCCCCEEEEEecCCCCc
Confidence 677889999998 4 46555443 4688888655544444321 113357889999999988777554
Q ss_pred -c-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC-CCCEEEEEe----------------cCCcEEEEEccccc
Q psy12802 245 -N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGG----------------LCGSVELFESVLKR 302 (1637)
Q Consensus 245 -~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~----------------~dg~v~iwd~~~~~ 302 (1637)
+ |.+||+.++.... ..... ... +.|+| ||+.+++++ .++.|++||..+++
T Consensus 263 ~~~l~~~d~~~g~~~~----l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 263 DRVIYKANPETLENEE----VMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp CEEEEEECTTTCCEEE----EEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred cceEEEEECCCCCeEE----eeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 3 7788776543210 01111 122 89999 999888755 34678999986554
No 201
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=2.3e-12 Score=150.78 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=172.3
Q ss_pred CceeEEEEcCCCCEEEEEeCC------------------------CeEEEEEcCCCC--------cccceEEEEECCCCC
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNV------------------------AGIWAWRGQNGR--------KSYVVKGLAFSPDST 59 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d------------------------~~i~vwd~~~~~--------h~~~V~~~~~spd~~ 59 (1637)
..+..++++|+|+++++...+ ++|.+||..+++ +...+.+++|+|+|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 568999999999999988777 479999998765 234788999999999
Q ss_pred eEEEEECCCeEEEEEcCCCCCCceeEeec------cCCCCCEEEEEEcC-CCC-EEEEe-CCCcEEEEEcCCCceeeecc
Q psy12802 60 KLAVAQSDNIIFIYKLGDDWGDKKVICNK------FIQQCPVTTMVWLA-DGP-IIYGQ-SDGKIKAAHVKANKTQTLYA 130 (1637)
Q Consensus 60 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~-~~~-l~~~~-~d~~v~vwd~~~~~~~~~~~ 130 (1637)
.+++.+.++.|++|+..........+... ..+-....+++++| ++. +++.+ .++.|++|+..+.....+..
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~ 183 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGE 183 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEecc
Confidence 88888888999999976421011111110 23445789999999 777 66665 68999999954433344432
Q ss_pred ----------cCCcEEEEEEecC-CCeEEEEeCCCcEEEEEecCCCCccccccccc--ccCCCCcEEEEecCCeEEEEe-
Q psy12802 131 ----------SNSFVVALCLNVR-GAGVLSGHADGSIVRYYVTEDASNFDQQQGRV--VQHPVPPYALSWPAGYILAAG- 196 (1637)
Q Consensus 131 ----------~~~~v~~l~~s~~-g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~- 196 (1637)
+...+.+++++|+ |..+++...++.|++|+..+ | +.+..+ ..+...+.+++|+|+.++...
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G--~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---K--EFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---C--CEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---C--cEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 2244899999998 77777777899999999874 2 455554 346678899999996444332
Q ss_pred -------cCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCC
Q psy12802 197 -------SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 197 -------~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~ 253 (1637)
.+..|.+|| .+|+.+..+.... .+...+..++++|+|..+++.+.++ |++|+.+.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~--~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR--KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS--SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC--CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 245899999 8899888875221 3556789999999997777777777 99998764
No 202
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=9.4e-14 Score=166.27 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
......|..+...|++++|+.+|+++... .|+ .+.++..+|.+|...|++++|+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~ 120 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------------------------DPG-DAEAWQFLGITQAENENEQAAIV 120 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------CcC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 34567888888888888888888775322 444 57788888888888888888888
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHH----------
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLA---------- 1108 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~a---------- 1108 (1637)
+|.++.... |....++..+|..|..+|++++|+..|.++-.....
T Consensus 121 ~~~~al~~~-------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 121 ALQRCLELQ-------------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG 175 (365)
T ss_dssp HHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------
T ss_pred HHHHHHhcC-------------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc
Confidence 887763221 233455666666666666666666665553211100
Q ss_pred --------HHHHHhcCCHHHHHHHHHhh---CCC-chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCH
Q psy12802 1109 --------ISMFKNQRQYENMIKLVRNY---HPD-LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLW 1176 (1637)
Q Consensus 1109 --------i~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~ 1176 (1637)
..+|.+.|++++|+.++++. .|. ....++..+|..|...|++++|+.+|.++
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------- 239 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA---------------- 239 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------
Confidence 11233444444444444432 222 13566777777777777777777777776
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHH
Q psy12802 1177 EDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALV 1256 (1637)
Q Consensus 1177 ~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~ 1256 (1637)
+...+.+..++..+|..+...|++++|++.|.++ ++ ..|..+.++..+|..
T Consensus 240 -----l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~-----~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 240 -----LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA-------------------LE-----IQPGFIRSRYNLGIS 290 (365)
T ss_dssp -----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HH-----HCTTCHHHHHHHHHH
T ss_pred -----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------Hh-----cCCCchHHHHHHHHH
Confidence 3333445567788888888888888888877654 11 145668899999999
Q ss_pred HHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHH
Q psy12802 1257 LEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLR 1330 (1637)
Q Consensus 1257 ~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 1330 (1637)
|...|++++|+..|.++ +.+.......+. ...+.....++..++..+...|+.+.|.....+
T Consensus 291 ~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTA------LSLQRKSRNQQQ------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCCHHHHHHHHHH------HHHHHCC------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHH------HHhCcccCCCcc------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999988 555433211100 001122357788888888888888777665543
No 203
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=4.7e-12 Score=149.45 Aligned_cols=294 Identities=14% Similarity=0.100 Sum_probs=196.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHH
Q psy12802 860 AGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENH----DVVSQIVKGLIKNESYIKAGQIYEFTNENEKALEC 935 (1637)
Q Consensus 860 A~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~ 935 (1637)
.|..+...|++++|+.+|.++... . |.++ ..+..++..+...|++++|.. .
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~---------~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-------------~ 65 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQV---------G---TEDLKTLSAIYSQLGNAYFYLHDYAKALE-------------Y 65 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------C---CSCHHHHHHHHHHHHHHHHHTTCHHHHHH-------------H
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh---------C---cccHHHHHHHHHHHHHHHHHcCCHHHHHH-------------H
Confidence 377889999999999999887221 1 2343 344445555555555555544 4
Q ss_pred HHhCCChHHHHHHHHHhC-CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc
Q psy12802 936 YRKGKVYDKCIDLTRKIN-PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ 1014 (1637)
Q Consensus 936 y~~~~~~~~A~~l~~~~~-~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~ 1014 (1637)
|. +|+.+.+... ++........+|..+...|++++|+.+|.++ +++.+...++.
T Consensus 66 ~~------~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~ 120 (338)
T 3ro2_A 66 HH------HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH-------------------LDISRELNDKV 120 (338)
T ss_dssp HH------HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHTTCHH
T ss_pred HH------HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-------------------HHHHHHhcCch
Confidence 43 4555544432 2344556778999999999999999988664 33333333333
Q ss_pred chHHHHHHHHHHHHHhCC--------------------HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhh
Q psy12802 1015 DIAQHVKTLAQHFKTVKD--------------------YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGE 1074 (1637)
Q Consensus 1015 ~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~ 1074 (1637)
....++..+|..|...|+ +++|++.|.+ |+++.+...+.+.
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~-------------------a~~~~~~~~~~~~ 181 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE-------------------NLSLVTALGDRAA 181 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH-------------------HHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH-------------------HHHHHHhcCCHHH
Confidence 356678999999999999 5555555543 4555555545566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHH
Q psy12802 1075 IKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAE 1154 (1637)
Q Consensus 1075 ~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1154 (1637)
...++..+|..+...|++++|+.+|.++ +.++.+.+. +.....++..+|..+...|++++|+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQR------LLIAKEFGD------------KAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHHTC------------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7788999999999999999999986553 222222211 1223457899999999999999999
Q ss_pred HHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHH
Q psy12802 1155 KYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFA 1234 (1637)
Q Consensus 1155 ~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a 1234 (1637)
.+|.++- ......+..... ..++..+|..+...|++++|++.|.++. ......+.
T Consensus 244 ~~~~~al------~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~------~~~~~~~~---- 298 (338)
T 3ro2_A 244 EYYKKTL------LLARQLKDRAVE---------AQSCYSLGNTYTLLQDYEKAIDYHLKHL------AIAQELKD---- 298 (338)
T ss_dssp HHHHHHH------HHHHHTTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHTC----
T ss_pred HHHHHHH------HHHHhhcchhHH---------HHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHHHhcCC----
Confidence 9998872 222222221111 2245678888888888888888886542 22211111
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1235 FELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1235 ~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
+.....++..+|..|...|++++|...|.++
T Consensus 299 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 299 --------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2234567888999999999999999999988
No 204
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2.9e-12 Score=154.13 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy12802 1020 VKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLY 1099 (1637)
Q Consensus 1020 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y 1099 (1637)
+...|..+...|++++|+..|.++.. +++...+.+....++..+|..|..+|++++|+.+|
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAES-------------------KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-------------------TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-------------------HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34478888888888888888776533 23333344557889999999999999999999996
Q ss_pred HHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHH
Q psy12802 1100 LIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDA 1179 (1637)
Q Consensus 1100 ~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A 1179 (1637)
.+ |+.++.+.+.+. +....++..+|..|...|+|++|+.+|.++- ..+.+.++....
T Consensus 167 ~~------al~~~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~ 223 (383)
T 3ulq_A 167 RQ------AYEIYKEHEAYN-----------IRLLQCHSLFATNFLDLKQYEDAISHFQKAY------SMAEAEKQPQLM 223 (383)
T ss_dssp HH------HHHHHHTCSTTH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHTTCHHHH
T ss_pred HH------HHHHHHhCccch-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHHHHcCChHHH
Confidence 55 344444443311 2235688999999999999999999998872 222222221111
Q ss_pred HHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Q psy12802 1180 YRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMK-SKLEEVHYKYALVLE 1258 (1637)
Q Consensus 1180 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~~a~~~~ 1258 (1637)
..++..+|..|...|++++|++.|.++ +++.+.... +..+.++..+|..|.
T Consensus 224 ---------~~~~~~lg~~y~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 224 ---------GRTLYNIGLCKNSQSQYEDAIPYFKRA-------------------IAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------HHHHHhhccchhHHHHHHHHHHHHH
Confidence 125678899999999999998888543 444444444 667889999999999
Q ss_pred hCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCCh---hhHHHHHHHhCChH
Q psy12802 1259 DNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENF---SKFETLLLRAHKVD 1335 (1637)
Q Consensus 1259 ~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~---~~A~~~~~~a~~~~ 1335 (1637)
..|++++|+..|.++ +.+....++ ......+..++..+...|++ ++|+..+.+.+...
T Consensus 276 ~~g~~~~A~~~~~~a------l~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKG------MAYSQKAGD-------------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336 (383)
T ss_dssp HTTCHHHHHHHHHHH------HHHHHHHTC-------------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHH------HHHHHHcCC-------------HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH
Confidence 999999999999987 444432222 11122245677777777774 33333332221110
Q ss_pred HHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy12802 1336 LIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIK 1408 (1637)
Q Consensus 1336 ~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 1408 (1637)
.....+..+|..|.+.|++++|+.+|.++.
T Consensus 337 -------------------------------------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 337 -------------------------------------------DLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 112247789999999999999999999765
No 205
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=1.9e-12 Score=153.04 Aligned_cols=266 Identities=11% Similarity=0.061 Sum_probs=167.8
Q ss_pred CCCCEEEEEe------CCCeEEEEEcCCCCc-----ccceEEEEECCCCCeEEEEE----------CCCeEEEEEcCCCC
Q psy12802 21 LDIVRLRSEG------NVAGIWAWRGQNGRK-----SYVVKGLAFSPDSTKLAVAQ----------SDNIIFIYKLGDDW 79 (1637)
Q Consensus 21 pdg~~la~~~------~d~~i~vwd~~~~~h-----~~~V~~~~~spd~~~la~~~----------~d~~i~iw~~~~~~ 79 (1637)
||++++.+.. .|+.|++||..+++. .+.-..++|||||+++.+++ .+++|.+||..+..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 4777766653 367999999988762 11112899999999999886 36789999988641
Q ss_pred CCceeEeecc---CCCCCEEEEEEcCCCC-EEEEe-C-CCcEEEEEcCCCce-eeecccCCcEEEEEEecCC-CeEEEEe
Q psy12802 80 GDKKVICNKF---IQQCPVTTMVWLADGP-IIYGQ-S-DGKIKAAHVKANKT-QTLYASNSFVVALCLNVRG-AGVLSGH 151 (1637)
Q Consensus 80 ~~~~~~~~~~---~~~~~v~~v~~s~~~~-l~~~~-~-d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g-~~l~s~~ 151 (1637)
.... +.... .+......++|+|||+ ++++. . +++|.+||+.+++. ..+..+.. ...+.+.|++ ..+++.+
T Consensus 93 ~~~~-i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 93 FEKE-ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp EEEE-EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEE
T ss_pred EEEE-EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEEC
Confidence 1111 11110 1234567899999999 66655 3 68999999999987 44133332 2335677876 6688888
Q ss_pred CCCcEEEEEecCCCCcccccc------cccccCCCCcEEEEecC--CeEEEEecCCeEEEEeCCC-c--eeEEeeccCC-
Q psy12802 152 ADGSIVRYYVTEDASNFDQQQ------GRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYESDG-R--VHRIFDYTAP- 219 (1637)
Q Consensus 152 ~dg~i~iwd~~~~~~g~~~~~------~~~~~~~~~v~~~~~~~--~~l~~~~~d~~i~iwd~~~-~--~~~~~~~~~~- 219 (1637)
.||.+.+|++...+ +.. ..+.....++ .+.+++ +.++..+.++.|.++|..+ . ....+.....
T Consensus 171 ~dg~~~~v~~~~~g----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 171 GDGGLLTINLGEDG----KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp TTSSEEEEEECTTS----SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred CCCcEEEEEECCCC----cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 99999999986532 222 1112222221 222222 3666677889999999432 2 2222221100
Q ss_pred ----CCCCccEEEEEECCCCCEEEEEec-----------Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCE
Q psy12802 220 ----HYKEREFTVACSSPSGQAVVVGSY-----------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR 283 (1637)
Q Consensus 220 ----~~~~~~i~~~~~sp~g~~l~~~~~-----------d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 283 (1637)
.........++|+|+++.+.++.. .. |.+||..+.+.. ..+.... +.+++|+|||++
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v------~~i~~~~-p~~ia~spdg~~ 318 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV------ARIPGRD-ALSMTIDQQRNL 318 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE------EEEECTT-CCEEEEETTTTE
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE------EEEecCC-eeEEEECCCCCE
Confidence 000011123789999888877643 22 888887765432 2222223 899999999999
Q ss_pred EEEEecCCcEEEEEcccc
Q psy12802 284 IACGGLCGSVELFESVLK 301 (1637)
Q Consensus 284 l~~~~~dg~v~iwd~~~~ 301 (1637)
|++++. ++|.+||..++
T Consensus 319 l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEECS-SCEEEEECSSS
T ss_pred EEEeCC-CeEEEEECCCC
Confidence 998887 99999999766
No 206
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.51 E-value=2.4e-13 Score=163.02 Aligned_cols=294 Identities=11% Similarity=-0.040 Sum_probs=193.4
Q ss_pred HHHHcCCHHHHHH-HHHHhCCHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 863 LYEKEGDHQTALN-YYLKANFTSKACNLVQNEPYLL-ENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 863 ~~~~~g~~~~Ai~-~y~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
.+...|+|++|+. .|.++-... +..| .....+..++..+...|++++|..+|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~---------------- 88 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE---------EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE---------------- 88 (368)
T ss_dssp ------------CHHHHCCCCCC---------SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH----------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC---------CCCcccchHHHHHHHHHHHHCCCHHHHHHHHH----------------
Confidence 3555678888888 877774322 1111 112334445555555555555444433
Q ss_pred ChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHH
Q psy12802 941 VYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHV 1020 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~ 1020 (1637)
++++ ..|.....+..+|.++...|++++|+.+|.++... .|+ .+.++
T Consensus 89 ---~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------~~~-~~~~~ 135 (368)
T 1fch_A 89 ---AAVQ-----QDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL------------------------KPD-NQTAL 135 (368)
T ss_dssp ---HHHH-----SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHH
T ss_pred ---HHHH-----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc------------------------CCC-CHHHH
Confidence 2222 23445557778999999999999999998775322 344 67789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhccCHH------------------------HHHHHHHHcCCHHHHHHHHHhhcC-hhh-
Q psy12802 1021 KTLAQHFKTVKDYKTAEKIYSHCDMHE------------------------QIVDMYHQTGQWEKAYAIAEQHLN-VGE- 1074 (1637)
Q Consensus 1021 ~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~y~~~g~~~~A~~~~~~~~~-~~~- 1074 (1637)
..+|.+|...|++++|++.|.++.... .+..++ ..|++++|+..+++... .|.
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc
Confidence 999999999999999999999874321 133334 88899999988887543 233
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHH
Q psy12802 1075 -IKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQA 1153 (1637)
Q Consensus 1075 -~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 1153 (1637)
...++..+|..+...|++++|+..|.++. + ..| ....++..+|..+...|++++|
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------~----~~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-------------------S----VRP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------H----hCc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 47788899999999999999988866531 1 122 2357889999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHH
Q psy12802 1154 EKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDF 1233 (1637)
Q Consensus 1154 ~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~ 1233 (1637)
+.+|.++ +...+....++..+|..+.+.|++++|+..|.++-.... .....
T Consensus 271 ~~~~~~a---------------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~-- 321 (368)
T 1fch_A 271 VAAYRRA---------------------LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR------KSRGP-- 321 (368)
T ss_dssp HHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------TC-----
T ss_pred HHHHHHH---------------------HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCCCc--
Confidence 9999988 333345556778889999999999999888865422111 11000
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1234 a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.....+..+.++..+|..|...|++++|...+.++
T Consensus 322 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 -----RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred -----cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 00013345889999999999999999999998876
No 207
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=5.2e-12 Score=164.66 Aligned_cols=242 Identities=12% Similarity=-0.012 Sum_probs=160.5
Q ss_pred cccceEEEEECCCCCeEEEE--ECCCeEEEEEcCCCCCCceeEeeccCCCCCEE---------EEEEc--CCCCE-EEEe
Q psy12802 45 KSYVVKGLAFSPDSTKLAVA--QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVT---------TMVWL--ADGPI-IYGQ 110 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~---------~v~~s--~~~~l-~~~~ 110 (1637)
|...|..++||+++-++++. +.++...||....+ +. ......+...+. ...|+ |||+. ++.+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CC---cceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 67789999999886666666 45788999997433 22 223334555555 56666 99983 5444
Q ss_pred C--CCcEEEEEcC--C-Cceeeecc-----cCCcEEEEEEecCCCeEEEEeCC----------CcEEEEEecCCC---Cc
Q psy12802 111 S--DGKIKAAHVK--A-NKTQTLYA-----SNSFVVALCLNVRGAGVLSGHAD----------GSIVRYYVTEDA---SN 167 (1637)
Q Consensus 111 ~--d~~v~vwd~~--~-~~~~~~~~-----~~~~v~~l~~s~~g~~l~s~~~d----------g~i~iwd~~~~~---~g 167 (1637)
. +..|.++++. + +....+.. |...+.+++|||||+.|++++.+ ..|++||+.+.. .+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 3 4567777766 4 66666666 67788999999999999998876 589999987620 01
Q ss_pred ccccccccc-cCCCCcEEEEecCC--eEEEEecC--------CeEEEEe-C-CCc--eeEEeeccCCCCCCccEEEEEEC
Q psy12802 168 FDQQQGRVV-QHPVPPYALSWPAG--YILAAGSD--------RIVTIYE-S-DGR--VHRIFDYTAPHYKEREFTVACSS 232 (1637)
Q Consensus 168 ~~~~~~~~~-~~~~~v~~~~~~~~--~l~~~~~d--------~~i~iwd-~-~~~--~~~~~~~~~~~~~~~~i~~~~~s 232 (1637)
.. ..+. .+...+..++|||+ .|++++.+ ..|.+|| . +|+ ....+.. .+...+..++|+
T Consensus 178 --~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~----~~~~~~~~~~~s 250 (662)
T 3azo_A 178 --AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG----GPEEAIAQAEWA 250 (662)
T ss_dssp --GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE----ETTBCEEEEEEC
T ss_pred --ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC----CCCceEcceEEC
Confidence 22 3344 55567788899995 67776654 3799999 4 451 3334432 234578999999
Q ss_pred CCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCC-----CcceeEEEEcCCCCEEEEEecCCcEEEEEc
Q psy12802 233 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN-----LYTISALSWKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 233 p~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~-----~~~i~~l~~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
|||+++++++.++ ..||.++.....+.......... ...+.+++|+|++..+++++. |.+++|.+
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999777777776 66776664333221111100000 011567899999999999998 99999954
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=7.8e-13 Score=172.43 Aligned_cols=266 Identities=10% Similarity=-0.016 Sum_probs=174.8
Q ss_pred EcCCCCEEEEEeCCC-----eEEEEEcCCCC-------------cccceEEEEECCCCCeEEEE-----ECCCeEEEEEc
Q psy12802 19 FNLDIVRLRSEGNVA-----GIWAWRGQNGR-------------KSYVVKGLAFSPDSTKLAVA-----QSDNIIFIYKL 75 (1637)
Q Consensus 19 ~spdg~~la~~~~d~-----~i~vwd~~~~~-------------h~~~V~~~~~spd~~~la~~-----~~d~~i~iw~~ 75 (1637)
.+|||.+++....++ .|++.+...+. |...+.+++|||||++||.+ +.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 348999998876543 35666654332 23468999999999999944 33468999999
Q ss_pred CCCCCCceeE-eeccCCCCCEEEEEEcCCCC-EEEEeCCCc-------------EEEEEcCCCce--ee---ecccCCcE
Q psy12802 76 GDDWGDKKVI-CNKFIQQCPVTTMVWLADGP-IIYGQSDGK-------------IKAAHVKANKT--QT---LYASNSFV 135 (1637)
Q Consensus 76 ~~~~~~~~~~-~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~-------------v~vwd~~~~~~--~~---~~~~~~~v 135 (1637)
.++. .+ ..... .....+++|+|||+ |++++.|.. |++|++.++.. .. ...+...+
T Consensus 155 ~tg~----~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~ 229 (695)
T 2bkl_A 155 DSGE----WSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF 229 (695)
T ss_dssp TTCC----BCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred CCCC----CcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence 8852 11 11111 11126789999999 888887765 99999998873 22 22355678
Q ss_pred EEEEEecCCCeEEEEeCCC----cEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEec----CCeEEEEe-C
Q psy12802 136 VALCLNVRGAGVLSGHADG----SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGS----DRIVTIYE-S 206 (1637)
Q Consensus 136 ~~l~~s~~g~~l~s~~~dg----~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~----d~~i~iwd-~ 206 (1637)
.++.|||||++|++++.++ .|.+|+..+ .....+..+...+....|+++.++..+. ++.|.+|| .
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGE------KDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTC------SSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTT
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCC------CceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCC
Confidence 9999999999998887665 555554332 2345556666677777776544555443 57899999 4
Q ss_pred CCce--eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCE
Q psy12802 207 DGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR 283 (1637)
Q Consensus 207 ~~~~--~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 283 (1637)
++.. ...+..+ .....+..++|+ ++.++++...++ .++|.++...... ........+.+..++++||++.
T Consensus 304 ~~~~~~~~~l~~~---~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~---~~l~~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 304 KPARASWKEIVPE---DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV---RTVQLPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp BCSGGGCEEEECC---CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE---EECCCSSSSEECCCBSCTTCSE
T ss_pred CCCccCCeEEecC---CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee---EEecCCCCeEEEEeecCCCCCE
Confidence 4442 2333322 124467888888 677888888888 7777666322110 0111223457788899999987
Q ss_pred EEEEe----cCCcEEEEEccccc
Q psy12802 284 IACGG----LCGSVELFESVLKR 302 (1637)
Q Consensus 284 l~~~~----~dg~v~iwd~~~~~ 302 (1637)
++... ..++|++||+.+++
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEcCCCCCCEEEEEECCCCc
Confidence 76333 34789999987654
No 209
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=2.3e-11 Score=145.78 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy12802 1019 HVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERL 1098 (1637)
Q Consensus 1019 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 1098 (1637)
++...|..+...|++++|+..|.++.. +++...+.+....++..+|..|...|++++|+.+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEK-------------------ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT-------------------TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHH-------------------HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 356678888888888888888877533 3333344566788999999999999999999998
Q ss_pred HHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHH
Q psy12802 1099 YLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWED 1178 (1637)
Q Consensus 1099 y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~ 1178 (1637)
|.+ |+.++.+.+.+. .....++..+|..|...|+|++|+.+|.++- ....+.++...
T Consensus 164 ~~~------al~~~~~~~~~~-----------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al------~~~~~~~~~~~ 220 (378)
T 3q15_A 164 ILQ------ALDIYQNHPLYS-----------IRTIQSLFVIAGNYDDFKHYDKALPHLEAAL------ELAMDIQNDRF 220 (378)
T ss_dssp HHH------HHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHTTCHHH
T ss_pred HHH------HHHHHHhCCCch-----------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------HHHHHcCCHHH
Confidence 655 344343333211 1346788999999999999999999998872 22222222211
Q ss_pred HHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy12802 1179 AYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLE 1258 (1637)
Q Consensus 1179 A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~ 1258 (1637)
. ..++..+|..+...|++++|++.|.++ +++.+....+..+.++..+|..+.
T Consensus 221 ~---------~~~~~~lg~~y~~~~~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 221 I---------AISLLNIANSYDRSGDDQMAVEHFQKA-------------------AKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp H---------HHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------HHHHHhhCChhHHHHHHHHHHHHH
Confidence 1 125678899999999999999988554 334444444555888999999999
Q ss_pred hCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCC---hhhHHHHHHHhCChH
Q psy12802 1259 DNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENEN---FSKFETLLLRAHKVD 1335 (1637)
Q Consensus 1259 ~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~ 1335 (1637)
..|++++|+..|.++ +.+. ...+.......+..++..+...++ +.+|+..+.+.+
T Consensus 273 ~~g~~~~A~~~~~~a------l~~~-------------~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--- 330 (378)
T 3q15_A 273 KAGQTQKAFQFIEEG------LDHI-------------TARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--- 330 (378)
T ss_dssp HTTCHHHHHHHHHHH------HHHC-------------CTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---
T ss_pred HCCCHHHHHHHHHHH------HHHH-------------HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---
Confidence 999999999999887 4332 333222223334555555556666 333333332221
Q ss_pred HHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy12802 1336 LIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIK 1408 (1637)
Q Consensus 1336 ~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 1408 (1637)
.+.. ....+..+|..|.+.|++++|+.+|.++.
T Consensus 331 ----------~~~~------------------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 ----------LHAY------------------------------IEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp ----------CHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------ChhH------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111 11236789999999999999999999865
No 210
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=2.3e-12 Score=148.69 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=165.8
Q ss_pred CCCceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC-----cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCce
Q psy12802 10 SSNVLQDDVFNLDIV-RLRSEGNVAGIWAWRGQNGR-----KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~-~la~~~~d~~i~vwd~~~~~-----h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~ 83 (1637)
+.....+++|+|+|+ +++++..++.|+.|+..++. +...+.+++|+|+|+.+++...++.|.+||..++. ..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~--~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE--WE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC--EE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc--EE
Confidence 345567899999998 77778888999999988652 35578999999999987776667899999986641 12
Q ss_pred eEeec-cC-CCCCEEEEEEcCCCC-EEE----Ee-------------CCCcEEEEEcCCCceeeecccCCcEEEEEEecC
Q psy12802 84 VICNK-FI-QQCPVTTMVWLADGP-IIY----GQ-------------SDGKIKAAHVKANKTQTLYASNSFVVALCLNVR 143 (1637)
Q Consensus 84 ~~~~~-~~-~~~~v~~v~~s~~~~-l~~----~~-------------~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~ 143 (1637)
.+... .. ....+..++++|+|+ +++ |+ ..+.|..++.. ++...+..+...+..++|+|+
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTT
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCC
Confidence 22111 11 124567899999999 555 22 13456666655 566666667778899999999
Q ss_pred CCeEEEEeCCCcEEEEEecCCCCccccc---ccccccCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCceeEEeeccCC
Q psy12802 144 GAGVLSGHADGSIVRYYVTEDASNFDQQ---QGRVVQHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAP 219 (1637)
Q Consensus 144 g~~l~s~~~dg~i~iwd~~~~~~g~~~~---~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 219 (1637)
|+.+++.+.++.|.+|++... | .. ...+..+...+.++++++ +.+.+++ ++.|.+||.+|+.+..+..
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~--g--~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~--- 254 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNAR--G--ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLT--- 254 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSS--S--CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEEC---
T ss_pred CCEEEEeCCCCeEEEEEECCC--C--cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEEC---
Confidence 999977777899999999732 2 22 122233556678899987 4666666 8999999988998888874
Q ss_pred CCCCccEEEEEE-CCCCCEEEEEecCcEEEEEeC
Q psy12802 220 HYKEREFTVACS-SPSGQAVVVGSYDNIKLFAWS 252 (1637)
Q Consensus 220 ~~~~~~i~~~~~-sp~g~~l~~~~~d~i~i~~~~ 252 (1637)
+.. +++++| +|+++.|.+++.+++.-++..
T Consensus 255 --~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~ 285 (296)
T 3e5z_A 255 --PQT-TSNLCFGGPEGRTLYMTVSTEFWSIETN 285 (296)
T ss_dssp --SSC-CCEEEEESTTSCEEEEEETTEEEEEECS
T ss_pred --CCC-ceeEEEECCCCCEEEEEcCCeEEEEEcc
Confidence 333 788999 699999999998874444443
No 211
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=2.5e-12 Score=150.56 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=171.3
Q ss_pred ccceEEEEECCCCCeEEEEECC------------------------CeEEEEEcCCCCCCceeEeec-cCCCCCEEEEEE
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSD------------------------NIIFIYKLGDDWGDKKVICNK-FIQQCPVTTMVW 100 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~ 100 (1637)
-..|.+++++|+|+.+++.+.+ +.|.+||..++ +++... ..+-..+..+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA----EILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC----CEEEEECTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC----eEEeccCCCccCCceEEEE
Confidence 4679999999999988887776 47999998764 222222 234567899999
Q ss_pred cCCCC-EEEEeCCCcEEEEEcCCCc--eeee---------cccCCcEEEEEEec-CCCeEEEEe-CCCcEEEEEecCCCC
Q psy12802 101 LADGP-IIYGQSDGKIKAAHVKANK--TQTL---------YASNSFVVALCLNV-RGAGVLSGH-ADGSIVRYYVTEDAS 166 (1637)
Q Consensus 101 s~~~~-l~~~~~d~~v~vwd~~~~~--~~~~---------~~~~~~v~~l~~s~-~g~~l~s~~-~dg~i~iwd~~~~~~ 166 (1637)
+|+|+ +++...++.|++||..+.. ...+ .++...+.+++++| +|..+++.+ .++.|++|+..
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~---- 174 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS---- 174 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT----
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC----
Confidence 99999 7778888999999987663 3444 24455789999999 788888886 68999999943
Q ss_pred ccccccccccc----------CCCCcEEEEecCC---eEEEEecCCeEEEEeCC-CceeEEeeccCCCCCCccEEEEEEC
Q psy12802 167 NFDQQQGRVVQ----------HPVPPYALSWPAG---YILAAGSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACSS 232 (1637)
Q Consensus 167 g~~~~~~~~~~----------~~~~v~~~~~~~~---~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~i~~~~~s 232 (1637)
| ..+..+.. +-..+..++++|+ .+++...++.|++||.+ |+.+..+... .+...+..++|+
T Consensus 175 g--~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~ 249 (329)
T 3fvz_A 175 G--KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYI 249 (329)
T ss_dssp S--CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEE
T ss_pred C--CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeec
Confidence 2 44444432 2234899999873 45556678899999954 9998888643 345578899999
Q ss_pred C------CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 233 P------SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 233 p------~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
| +|+..++.+.+. +++|+...+...... .....+...+..++++|+|..+++.+.+++|++|+..
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~--~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF--KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE--CCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE--cCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 9 333222223333 888887765543111 0112345678999999999888888899999999984
No 212
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=7.5e-13 Score=172.56 Aligned_cols=236 Identities=11% Similarity=-0.020 Sum_probs=166.6
Q ss_pred CCCceeEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCcc-----cce--EEEEECCCCCeEEEEECCCe--------
Q psy12802 10 SSNVLQDDVFNLDIVRLRSE-----GNVAGIWAWRGQNGRKS-----YVV--KGLAFSPDSTKLAVAQSDNI-------- 69 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~-----~~d~~i~vwd~~~~~h~-----~~V--~~~~~spd~~~la~~~~d~~-------- 69 (1637)
|...+..++|||||++||.+ +.+.+|++||+.+++.. ..+ .+++|||||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 34468899999999999954 33468999999987632 233 68999999999999988776
Q ss_pred -----EEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC----cEEEEEcCCCceeeecccCCcEEEEE
Q psy12802 70 -----IFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG----KIKAAHVKANKTQTLYASNSFVVALC 139 (1637)
Q Consensus 70 -----i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~----~v~vwd~~~~~~~~~~~~~~~v~~l~ 139 (1637)
|++|++.++......+.....+...+.++.|||||+ +++++.++ .|++|+..++....+..+...+....
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH 278 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE
Confidence 999999886332344544445667899999999999 77766555 67778776677777777777777777
Q ss_pred EecCCCeEEEEeC----CCcEEEEEecCCCCcccccccccccC--CCCcEEEEecCC-eEEEEecCCeEEEEe--CCCce
Q psy12802 140 LNVRGAGVLSGHA----DGSIVRYYVTEDASNFDQQQGRVVQH--PVPPYALSWPAG-YILAAGSDRIVTIYE--SDGRV 210 (1637)
Q Consensus 140 ~s~~g~~l~s~~~----dg~i~iwd~~~~~~g~~~~~~~~~~~--~~~v~~~~~~~~-~l~~~~~d~~i~iwd--~~~~~ 210 (1637)
| ++|. ++..+. ++.|.+||+.+... .....+..+ ...+..++|+.+ .+++...|+..++|. .+|+.
T Consensus 279 ~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 279 A-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR---ASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKP 353 (695)
T ss_dssp E-ETTE-EEEEECTTCTTCEEEEEBTTBCSG---GGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCE
T ss_pred e-cCCc-EEEEECCCCCCCEEEEEeCCCCCc---cCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCe
Confidence 7 6666 554443 57899999876321 112334433 445778888876 566677888888886 56777
Q ss_pred eEEeeccCCCCCCccEEEEEECCCCCEEEEEecC----c-EEEEEeCCC
Q psy12802 211 HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----N-IKLFAWSPS 254 (1637)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----~-i~i~~~~~~ 254 (1637)
...+..+ ....+..++++|+++.++..... + |.+||+.++
T Consensus 354 ~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 354 VRTVQLP----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEECCCS----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred eEEecCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 6666532 24567788999999877644322 2 777776554
No 213
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.49 E-value=5.3e-12 Score=165.17 Aligned_cols=265 Identities=12% Similarity=0.074 Sum_probs=174.3
Q ss_pred cCCCCEEEEEeCCC-----eEEEEEcCCCC-------------cccceEEEEECCCCCeEEEEECCC-----eEEEEEcC
Q psy12802 20 NLDIVRLRSEGNVA-----GIWAWRGQNGR-------------KSYVVKGLAFSPDSTKLAVAQSDN-----IIFIYKLG 76 (1637)
Q Consensus 20 spdg~~la~~~~d~-----~i~vwd~~~~~-------------h~~~V~~~~~spd~~~la~~~~d~-----~i~iw~~~ 76 (1637)
+|||++++....++ .+++.+..++. +...+.+++|||||++||.+++++ .|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 38999988764332 45555543332 223688999999999999776543 89999998
Q ss_pred CCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCc----------------EEEEEcCCCce--eee---cccCCc
Q psy12802 77 DDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGK----------------IKAAHVKANKT--QTL---YASNSF 134 (1637)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~----------------v~vwd~~~~~~--~~~---~~~~~~ 134 (1637)
++ +...... ....+.+++|+|||+ |++++.++. |++|++.++.. ..+ ..|...
T Consensus 160 tg----~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~ 234 (710)
T 2xdw_A 160 GA----KELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW 234 (710)
T ss_dssp TT----EEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred CC----CCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeE
Confidence 85 2222111 122366799999999 888877765 99999998874 222 234566
Q ss_pred EEEEEEecCCCeEEEEeC-----CCcEEEEEecC------CCCcccccccccccCCCCcEEEEecC--CeEEEEec----
Q psy12802 135 VVALCLNVRGAGVLSGHA-----DGSIVRYYVTE------DASNFDQQQGRVVQHPVPPYALSWPA--GYILAAGS---- 197 (1637)
Q Consensus 135 v~~l~~s~~g~~l~s~~~-----dg~i~iwd~~~------~~~g~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~---- 197 (1637)
+.++.|||||++|++++. +..|++||+.+ +. .....+..+...+... |+| +.++..+.
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI----LKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS----CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc----cceEEeeCCCCcEEEE-EeccCCEEEEEECCCCC
Confidence 889999999999888765 56899999875 21 2345555666666553 554 45655544
Q ss_pred CCeEEEEe-CCCc--eeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc---EEEEEeCCCCCccccCCCcccCCCcc
Q psy12802 198 DRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---IKLFAWSPSKSVWEEQPNKTIPNLYT 271 (1637)
Q Consensus 198 d~~i~iwd-~~~~--~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---i~i~~~~~~~~~~~~~~~~~~~~~~~ 271 (1637)
.+.|.+|| .++. ....+..+ .....+..++|++++.++++...++ |.+|++..+... .....+.+.
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-----~~l~~~~~~ 381 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPE---HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-----KIFPLEVGS 381 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECC---CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECCCSSE
T ss_pred CCEEEEEeCCCCCcccceeccCC---CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-----EecCCCCce
Confidence 34699999 4443 23444422 1113678899998888888888887 444554333221 111123567
Q ss_pred eeEEEEcCCCCEEEEEe----cCCcEEEEEccccc
Q psy12802 272 ISALSWKRDGSRIACGG----LCGSVELFESVLKR 302 (1637)
Q Consensus 272 i~~l~~spdg~~l~~~~----~dg~v~iwd~~~~~ 302 (1637)
+..++++|+++.++... ..++|+.||+.+++
T Consensus 382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88999999998766432 34789999987654
No 214
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=2.1e-11 Score=143.82 Aligned_cols=306 Identities=9% Similarity=0.010 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhhcccCCCCC----CchHHHHHHHHHHhcCHHHHHH
Q psy12802 730 GMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDP----LQCPELWARMAILNKQFKVAEG 805 (1637)
Q Consensus 730 ~~w~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~a~~~~~~~~A~~ 805 (1637)
..|...|..+...++++.|..+|...-.. .|.. ...+..++.++...|++++|+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 64 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV---------------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh---------------------CcccHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45677888999999999999888665332 1111 2345567888888899999888
Q ss_pred HHHhcCcHHHHHHHHHHcCCHHHHHHHHHhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHhCCHHH
Q psy12802 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSK 885 (1637)
Q Consensus 806 ~~~~~~~~~~a~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~g~~~~Ai~~y~~~~~~~~ 885 (1637)
.| ..++.+....+.. +.....+... +.++...|++++|+..|.++
T Consensus 65 ~~------~~al~~~~~~~~~--------------~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~a----- 109 (338)
T 3ro2_A 65 YH------HHDLTLARTIGDQ--------------LGEAKASGNL----------GNTLKVLGNFDEAIVCCQRH----- 109 (338)
T ss_dssp HH------HHHHHHHHHHTCH--------------HHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHH-----
T ss_pred HH------HHHHHHhhccccc--------------HHHHHHHHHH----------HHHHHHccCHHHHHHHHHHH-----
Confidence 87 5555554444332 1222222222 77888999999999998876
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCCc-------------HHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHh
Q psy12802 886 ACNLVQNEPYLLENHDVVSQIVKGLIKNES-------------YIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKI 952 (1637)
Q Consensus 886 a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~-------------~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~ 952 (1637)
..+....+..+.....+..++..+...|+ .+.|... ++.|+..|. +++.+.+..
T Consensus 110 -l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~A~~~~~------~a~~~~~~~ 176 (338)
T 3ro2_A 110 -LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------LQAAVDLYE------ENLSLVTAL 176 (338)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH------HHHHHHHHH------HHHHHHHHH
T ss_pred -HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH------HHHHHHHHH------HHHHHHHhc
Confidence 33333322111112344445555555555 1111100 344444443 455555544
Q ss_pred C-CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Q psy12802 953 N-PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVK 1031 (1637)
Q Consensus 953 ~-~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g 1031 (1637)
. ++........+|..+...|++++|+.+|.++ +.+.....++......+..+|..+...|
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-------------------LLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-------------------HHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 2 2334456778999999999999999988664 2333333333324557899999999999
Q ss_pred CHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHH
Q psy12802 1032 DYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISM 1111 (1637)
Q Consensus 1032 ~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~ 1111 (1637)
++++|+.+|.++. ++.....+......++..+|..+..+|++++|+.+|.++ +.+
T Consensus 238 ~~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------~~~ 292 (338)
T 3ro2_A 238 EFETASEYYKKTL-------------------LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------LAI 292 (338)
T ss_dssp CHHHHHHHHHHHH-------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHHHH-------------------HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHH
Confidence 9999999887753 333343344556788899999999999999999986553 322
Q ss_pred HHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1112 FKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
....+. +.....++..+|..|...|++++|..+|.++
T Consensus 293 ~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 293 AQELKD------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCC------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 222221 1223567889999999999999999999987
No 215
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=2e-11 Score=146.78 Aligned_cols=249 Identities=13% Similarity=0.123 Sum_probs=171.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHh
Q psy12802 963 EWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSH 1042 (1637)
Q Consensus 963 ~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 1042 (1637)
..|..+...|++++|+.+|.++... ++...++.....++..+|.+|...|++++|+..|.+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESK-------------------LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-------------------GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-------------------HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3788888899999999988775432 333333323567899999999999999999998876
Q ss_pred ccCHHHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHH
Q psy12802 1043 CDMHEQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENM 1121 (1637)
Q Consensus 1043 ~~~~~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a 1121 (1637)
+ +++.++..+ .+....++..+|..|..+|++++|+.+|.++ +.++.+.++
T Consensus 169 a-------------------l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~---- 219 (383)
T 3ulq_A 169 A-------------------YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA------YSMAEAEKQ---- 219 (383)
T ss_dssp H-------------------HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTC----
T ss_pred H-------------------HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHHHHHcCC----
Confidence 4 444444433 4566788999999999999999999996553 333332222
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCC----ccchHHHHH
Q psy12802 1122 IKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGG----QEAVEPVVY 1197 (1637)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~----~~~~~~l~~ 1197 (1637)
+.....++..+|..|...|++++|+.+|.++-. +.+...+ ..++..+|.
T Consensus 220 --------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 220 --------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA-------------------VFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHHTTCGGGHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------HHHhhccchhHHHHHHHHHH
Confidence 123356889999999999999999999988722 2222222 235678889
Q ss_pred HHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---hHHHHHHHHHcC
Q psy12802 1198 LWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQ---FNEAETQFIKAN 1274 (1637)
Q Consensus 1198 ~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~a~ 1274 (1637)
.+.+.|++++|++.|.++ +++.+....+.....+..++..+...|+ +.+|+..+.+.+
T Consensus 273 ~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKG-------------------MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM 333 (383)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------------HHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHH-------------------HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence 999999999998888654 2222222222222234568888888888 566666665553
Q ss_pred ChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHH
Q psy12802 1275 KPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLR 1330 (1637)
Q Consensus 1275 ~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 1330 (1637)
.+. ....++..+|..+...|++++|..+|.+
T Consensus 334 ~~~-------------------------~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 334 LYA-------------------------DLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp CHH-------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHH-------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 322 1334567788888888888888877633
No 216
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.48 E-value=7.9e-13 Score=155.44 Aligned_cols=263 Identities=13% Similarity=0.025 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12802 961 EEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY 1040 (1637)
Q Consensus 961 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 1040 (1637)
....|..+...|++++|+.+|.++... .|+ ...++..+|.++...|++++|+.+|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 78 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA------------------------APE-REEAWRSLGLTQAENEKDGLAIIAL 78 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346777777888888887777664221 344 5667888888888888888888888
Q ss_pred HhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCch-------HHH----
Q psy12802 1041 SHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPD-------LAI---- 1109 (1637)
Q Consensus 1041 ~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~-------~ai---- 1109 (1637)
.++... .|....++..+|..+...|++++|++.|.++.... ...
T Consensus 79 ~~a~~~-------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 79 NHARML-------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp HHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred HHHHhc-------------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 775322 13335667777777778888888877776631110 000
Q ss_pred ----------H--HHHhcCCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCC
Q psy12802 1110 ----------S--MFKNQRQYENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNL 1175 (1637)
Q Consensus 1110 ----------~--~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~ 1175 (1637)
. ++...|++++|++.+++... +....++..+|..+...|++++|+.+|.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~--------------- 198 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA--------------- 198 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH---------------
Confidence 1 24455566666666655321 223466777777777777777777777776
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHH
Q psy12802 1176 WEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYAL 1255 (1637)
Q Consensus 1176 ~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~ 1255 (1637)
+...+.+..++..+|..+...|++++|++.|.++. ...+..+.++..+|.
T Consensus 199 ------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------------~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 199 ------VELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL------------------------DINPGYVRVMYNMAV 248 (327)
T ss_dssp ------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHH
T ss_pred ------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HcCCCCHHHHHHHHH
Confidence 22223445566777777777777777777775541 113556788999999
Q ss_pred HHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHH
Q psy12802 1256 VLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLR 1330 (1637)
Q Consensus 1256 ~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 1330 (1637)
.+...|++++|+..|.++ +.+....+.... .......+.++..++..+...|++++|...+.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a------~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRA------IYMQVGGTTPTG------EASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHTTCHHHHHHHHHHH------HHHHTTSCC-----------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHHH------HHhCCccccccc------cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999887 433211000000 000001577888999999999999988877654
No 217
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.47 E-value=1.1e-11 Score=142.20 Aligned_cols=238 Identities=10% Similarity=0.059 Sum_probs=167.3
Q ss_pred cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEee---ccCCCCCEEEEEE-cCCCC-EEEEeC-CCcEEEE
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN---KFIQQCPVTTMVW-LADGP-IIYGQS-DGKIKAA 118 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~v~~-s~~~~-l~~~~~-d~~v~vw 118 (1637)
+-..+.+++++|+|+.+++.+.++.|.+||.... ....+.. ..++...+.++++ .+++. +++... ++.|.+|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 4567999999999998888788999999997642 1111111 0124467899999 57777 444433 8899999
Q ss_pred EcCCCce-eeec-ccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc--cCCCCcEEEEecCC-e-E
Q psy12802 119 HVKANKT-QTLY-ASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV--QHPVPPYALSWPAG-Y-I 192 (1637)
Q Consensus 119 d~~~~~~-~~~~-~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~--~~~~~v~~~~~~~~-~-l 192 (1637)
|. +++. ..+. .+...+.+++++|+|+.+++...++.|.+||... .....+. .+...+..++++|+ . +
T Consensus 106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------NVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------CEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC------CEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 94 4544 4443 3446789999999999888877889999999643 3333332 34567899999984 4 4
Q ss_pred EEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC--cEEEEEeCCCCCccccCCCcccCCCc
Q psy12802 193 LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKTIPNLY 270 (1637)
Q Consensus 193 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--~i~i~~~~~~~~~~~~~~~~~~~~~~ 270 (1637)
++.+.++.|.+||.+++.+..+... .+...+..++++|+|+++++...+ +|.+|+.+. ..... ........
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~~~~~---g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~---~~~~~~~~ 251 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQIGGE---GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISA---LESKVKHA 251 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESCT---TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEE---EEESSCCS
T ss_pred EEECCCCEEEEEcCCCCEEEEEccC---CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEE---EcccCCCC
Confidence 4455689999999888887777532 223568899999999988888766 499998432 21111 11111223
Q ss_pred ceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 271 TISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 271 ~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.+.+++++|+|+.+++ +.+++|++|+..
T Consensus 252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp CEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred cceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 5779999999986666 679999999974
No 218
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=8.3e-11 Score=145.68 Aligned_cols=329 Identities=12% Similarity=0.055 Sum_probs=209.9
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCCeEEEEEcC--CCCCCceeEeeccCC
Q psy12802 20 NLDIVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLG--DDWGDKKVICNKFIQ 91 (1637)
Q Consensus 20 spdg~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~ 91 (1637)
+|++.++++...+++|.++|..+++ ....+.++.|||||+++.+++.|+.|.+||+. +. +.+.... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~----~~v~~i~-~ 238 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP----TTVAEIK-I 238 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----CEEEEEE-C
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC----cEeEEEe-c
Confidence 3445677777888999999999876 24467899999999999999999999999995 42 3332222 2
Q ss_pred CCCEEEEEEc----CCCC-E-EEEeCCCcEEEEEcCCCce-eeecc----------c-CCcEEEEEEecCCCeEEEE-eC
Q psy12802 92 QCPVTTMVWL----ADGP-I-IYGQSDGKIKAAHVKANKT-QTLYA----------S-NSFVVALCLNVRGAGVLSG-HA 152 (1637)
Q Consensus 92 ~~~v~~v~~s----~~~~-l-~~~~~d~~v~vwd~~~~~~-~~~~~----------~-~~~v~~l~~s~~g~~l~s~-~~ 152 (1637)
......++|+ |||+ + ++...+++|.++|..+.+. ..+.. | ...+..+..++++..+++. ..
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 3446799999 6999 4 4455679999999999887 33321 2 2267889999987765544 45
Q ss_pred CCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEE-EecCCeEEEEe-CCCceeEEeec-cCCCCCCccEE
Q psy12802 153 DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILA-AGSDRIVTIYE-SDGRVHRIFDY-TAPHYKEREFT 227 (1637)
Q Consensus 153 dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~-~~~d~~i~iwd-~~~~~~~~~~~-~~~~~~~~~i~ 227 (1637)
+|.|.++|...... ...........+..+.|+|+ ++++ ...+++|.++| .+++.+..+.. ... +|...-.
T Consensus 319 ~g~v~~vd~~~~~~----~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~-Phpg~g~ 393 (567)
T 1qks_A 319 TGKILLVDYTDLNN----LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT-PHPGRGA 393 (567)
T ss_dssp TTEEEEEETTCSSE----EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS-BCCTTCE
T ss_pred CCeEEEEecCCCcc----ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC-CCCccce
Confidence 79999999875321 11112234456778899984 4544 45688999999 88888877765 333 3433222
Q ss_pred EEEECCCCCEEE-EEe-cCc-EEEEEeCCCCC---ccccCCCcccCCC-cceeEEEEcCCCCEEEEEec-------CCcE
Q psy12802 228 VACSSPSGQAVV-VGS-YDN-IKLFAWSPSKS---VWEEQPNKTIPNL-YTISALSWKRDGSRIACGGL-------CGSV 293 (1637)
Q Consensus 228 ~~~~sp~g~~l~-~~~-~d~-i~i~~~~~~~~---~~~~~~~~~~~~~-~~i~~l~~spdg~~l~~~~~-------dg~v 293 (1637)
.+ ++|++..+. ++. .++ |.+++.++... .|.. ...+... ..-..+..+|+++++.+... .++|
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv--v~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v 470 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI--LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 470 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE--EEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceE
Confidence 22 688855554 443 234 99999886432 1322 1222211 22245778999999888663 4599
Q ss_pred EEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEe------CCCcEEEee
Q psy12802 294 ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR------TPDTLLLGD 367 (1637)
Q Consensus 294 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~------~~~~i~i~d 367 (1637)
.++|+.+.+.- +.. ..+.+..+.. .-.+ ...+..+..+.|+|+|+.+..+ .++.|.|+|
T Consensus 471 ~v~d~~~~~~~--g~~-------~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 471 AVFDIKAMTGD--GSD-------PEFKTLPIAE-----WAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EEEEGGGCCCS--SSC-------CCEEEECHHH-----HHTC-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EEEECCccccc--ccC-------CCcEEecccc-----cccc-CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 99999654110 000 0000000000 0000 0123478889999998665543 268999999
Q ss_pred ccccceeee
Q psy12802 368 LHRNLLSEV 376 (1637)
Q Consensus 368 ~~~~~~~~~ 376 (1637)
..+.++...
T Consensus 536 ~~t~~~~~~ 544 (567)
T 1qks_A 536 DKTLELKHV 544 (567)
T ss_dssp TTTTEEEEE
T ss_pred CCCceEEEE
Confidence 988877644
No 219
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=2.8e-12 Score=153.38 Aligned_cols=237 Identities=10% Similarity=-0.035 Sum_probs=168.8
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
|.....+..+|.++...|++++|+.+|.++... .|+ .+.++..+|.+|...|+++
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLEL------------------------QPN-NLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------------CCC-CHHHHHHHHHHHHccccHH
Confidence 344557789999999999999999998775322 444 6778999999999999999
Q ss_pred HHHHHHHhccCHH------------------HHHHHHHHcCCHHHHHHHHHhhcC-hhh--HHHHHHHHHHHHHHcCCHH
Q psy12802 1035 TAEKIYSHCDMHE------------------QIVDMYHQTGQWEKAYAIAEQHLN-VGE--IKATFIQKCKQLEEENKFK 1093 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~------------------~~~~~y~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~a~~~~~~g~~~ 1093 (1637)
+|+.+|.++.... .+..+|.+.|++++|++++++... .|. .+.++..+|..|..+|+++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 9999999985431 136678888888888888877543 233 5778888999999999988
Q ss_pred HHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhc
Q psy12802 1094 EAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL 1173 (1637)
Q Consensus 1094 ~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~ 1173 (1637)
+|+..|.++- + ..| ....++..+|..|...|++++|+.+|.++
T Consensus 231 ~A~~~~~~al-------------------~----~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------- 273 (365)
T 4eqf_A 231 RAIDAFNAAL-------------------T----VRP-EDYSLWNRLGATLANGDRSEEAVEAYTRA------------- 273 (365)
T ss_dssp HHHHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHH-------------------H----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Confidence 8888866531 1 123 23578999999999999999999999998
Q ss_pred CCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHH
Q psy12802 1174 NLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKY 1253 (1637)
Q Consensus 1174 g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 1253 (1637)
+...+.+..++..+|..+...|++++|++.|.++-.+.. +.+..+. ...+.....++..+
T Consensus 274 --------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~------~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 274 --------LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR------KSRNQQQ------VPHPAISGNIWAAL 333 (365)
T ss_dssp --------HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH------CC------------------CHHHHHH
T ss_pred --------HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccCCCcc------cchhhhHHHHHHHH
Confidence 444455566788999999999999999999866522221 1100000 00011235678889
Q ss_pred HHHHHhCCChHHHHHHHHHc
Q psy12802 1254 ALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1254 a~~~~~~g~~~~A~~~~~~a 1273 (1637)
+..+...|+.+.|.....+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 99999999988888777664
No 220
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.45 E-value=5.8e-12 Score=148.86 Aligned_cols=245 Identities=7% Similarity=-0.001 Sum_probs=167.9
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEcCCCCccc-------------ceEEEEECCCCCeEEEEEC--CCeE
Q psy12802 16 DDVFNLDIVRLRSEG----------NVAGIWAWRGQNGRKSY-------------VVKGLAFSPDSTKLAVAQS--DNII 70 (1637)
Q Consensus 16 ~~~~spdg~~la~~~----------~d~~i~vwd~~~~~h~~-------------~V~~~~~spd~~~la~~~~--d~~i 70 (1637)
.++|||||+++++++ .++.|.+||..+++... ....++|||||++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 889999999999876 25679999998776322 3457899999999998863 6899
Q ss_pred EEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCC-Ccee-e------ecccCCcEEEEEE
Q psy12802 71 FIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKA-NKTQ-T------LYASNSFVVALCL 140 (1637)
Q Consensus 71 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~-~~~~-~------~~~~~~~v~~l~~ 140 (1637)
.+||+.++ +.+.....+. ....+.+.|++. +++.+.||.+.+|+... ++.. . +..+..+ ..+.+
T Consensus 134 ~v~d~~~~----~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 207 (361)
T 2oiz_A 134 GIVDVAKG----DYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAP 207 (361)
T ss_dssp EEEETTTT----EEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCC
T ss_pred EEEECCCC----cEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEe
Confidence 99999884 4443302222 233466778774 88889999999999865 5442 1 1112222 23445
Q ss_pred ecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc-------c---CCCCcEEEEecCC--eEEEEec-----------
Q psy12802 141 NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV-------Q---HPVPPYALSWPAG--YILAAGS----------- 197 (1637)
Q Consensus 141 s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~-------~---~~~~v~~~~~~~~--~l~~~~~----------- 197 (1637)
+|++..++..+.++.|.++|+..... .....+. . .......++|+|+ .++++..
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~ 284 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEV---KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP 284 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSC---EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCc---eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence 78888888888899999999875321 1111110 0 0122223678773 5555432
Q ss_pred CCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCC--CCccccCCCcc-cCCCccee
Q psy12802 198 DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPS--KSVWEEQPNKT-IPNLYTIS 273 (1637)
Q Consensus 198 d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~--~~~~~~~~~~~-~~~~~~i~ 273 (1637)
.+.|.+|| .+++.+.++.. +. +..++|+|||+++++++.+.|.+||..+. +. ... ........
T Consensus 285 ~~~v~viD~~t~~~v~~i~~-----~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~------~~~i~~~G~~P~ 351 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPG-----RD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKL------LRTIEGAAEASL 351 (361)
T ss_dssp CSEEEEEETTTTEEEEEEEC-----TT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEE------EEEETTSCSSEE
T ss_pred CceEEEEECCCCcEEEEEec-----CC--eeEEEECCCCCEEEEeCCCeEEEEECCCCccee------eEEeccCCCCcE
Confidence 35899999 88899888874 22 88999999999999888733999998876 32 222 23445678
Q ss_pred EEEEcCCCC
Q psy12802 274 ALSWKRDGS 282 (1637)
Q Consensus 274 ~l~~spdg~ 282 (1637)
.+.++|||.
T Consensus 352 ~~~~~p~G~ 360 (361)
T 2oiz_A 352 QVQFHPVGG 360 (361)
T ss_dssp EEEECCCSC
T ss_pred EEEecCCCC
Confidence 899999986
No 221
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.45 E-value=8.1e-12 Score=147.06 Aligned_cols=237 Identities=11% Similarity=-0.014 Sum_probs=162.3
Q ss_pred ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK 124 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~ 124 (1637)
+..|.+++|+|++..++..+.++.++.|. . ........+...+.+++|+|+|+ ++++..++.|.+||..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT-A------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE-C------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred ccccceeeecCCccceeEEeecccCcccc-c------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 34578889999988888778888899993 1 22333334566789999999999 6677888999999999988
Q ss_pred eeeec-ccCCcEEEEEEecCCCeEEEEeCC----CcEEEEEecCCCCccccccccc--ccCCCCcEEEEecCC-eEEEEe
Q psy12802 125 TQTLY-ASNSFVVALCLNVRGAGVLSGHAD----GSIVRYYVTEDASNFDQQQGRV--VQHPVPPYALSWPAG-YILAAG 196 (1637)
Q Consensus 125 ~~~~~-~~~~~v~~l~~s~~g~~l~s~~~d----g~i~iwd~~~~~~g~~~~~~~~--~~~~~~v~~~~~~~~-~l~~~~ 196 (1637)
...+. .+...+.+++++|+|+.+++...+ +.|.+||..+.. ....+ ..+...+.++.++|+ .++.++
T Consensus 78 ~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 152 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-----LQDIIEDLSTAYCIDDMVFDSKGGFYFTD 152 (333)
T ss_dssp EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-----CEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-----EEEEEccCccCCcccceEECCCCCEEEEe
Confidence 74443 567789999999999988877766 689999987532 11111 134567899999884 555554
Q ss_pred c-------CCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEe-cCc-EEEEEeCCCCCccc-c--CCCc
Q psy12802 197 S-------DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPSKSVWE-E--QPNK 264 (1637)
Q Consensus 197 ~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~-i~i~~~~~~~~~~~-~--~~~~ 264 (1637)
. .+.|..+|..+..+..+.. ....+..++|+|+|+.++++. .++ |.+|+......... . ....
T Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 153 FRGYSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp CCCBTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred ccccccCCCceEEEEeCCCCEEEEeec-----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 4 3567777755433333331 122478899999999766554 344 99999864221110 0 0000
Q ss_pred ccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 265 TIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 265 ~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.......+..++++++|+.+++...++.|.+||..
T Consensus 228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 11112467889999999988877778999999973
No 222
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.44 E-value=1e-10 Score=144.91 Aligned_cols=280 Identities=11% Similarity=0.024 Sum_probs=189.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCc------ccceEEEEEC----CCCCeEEEEE-CCCeEEEEEcCCCC
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQ--NGRK------SYVVKGLAFS----PDSTKLAVAQ-SDNIIFIYKLGDDW 79 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~--~~~h------~~~V~~~~~s----pd~~~la~~~-~d~~i~iw~~~~~~ 79 (1637)
.+..++|||||+++.+++.++.|.+||+. +++. ......++|| |||+++++++ .+++|.|+|..+..
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 45689999999999999999999999995 5542 3346789999 7999998766 45999999987742
Q ss_pred CCceeEeecc-------CC-CCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEecCCCeE
Q psy12802 80 GDKKVICNKF-------IQ-QCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGV 147 (1637)
Q Consensus 80 ~~~~~~~~~~-------~~-~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~~g~~l 147 (1637)
.. +.+.... .| ...+..+..++++. ++....+|+|.++|..+.+. ............+.|+|+|+++
T Consensus 278 ~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 278 PK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp EE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred EE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 11 1111100 02 23688999999988 55566779999999987653 2223345567889999999998
Q ss_pred EEEe-CCCcEEEEEecCCCCcccccccccc-----cCCCCcEEEEecCC--eEE-EEe-cCCeEEEEe-CC-------Cc
Q psy12802 148 LSGH-ADGSIVRYYVTEDASNFDQQQGRVV-----QHPVPPYALSWPAG--YIL-AAG-SDRIVTIYE-SD-------GR 209 (1637)
Q Consensus 148 ~s~~-~dg~i~iwd~~~~~~g~~~~~~~~~-----~~~~~v~~~~~~~~--~l~-~~~-~d~~i~iwd-~~-------~~ 209 (1637)
++++ .++.|.++|..+. +....+. .|.+.-..+ ++|+ .+. ++. .+++|.++| .. .+
T Consensus 357 ~va~~~sn~V~ViD~~t~-----kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEG-----KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp EEEEGGGTEEEEEETTTT-----EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred EEEeCCCCeEEEEECCCC-----cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 7766 5789999999874 3333322 243322222 4663 343 443 468999999 44 46
Q ss_pred eeEEeeccCCCCCCccEEEEEECCCCCEEEEEec--------CcEEEEEeCCC-----CCccccCCCc---cc-CCCcce
Q psy12802 210 VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY--------DNIKLFAWSPS-----KSVWEEQPNK---TI-PNLYTI 272 (1637)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--------d~i~i~~~~~~-----~~~~~~~~~~---~~-~~~~~i 272 (1637)
.++++... ...-..+..+|+++++.+... +.|.+||..+. ...+...... .+ .....+
T Consensus 431 vv~~i~~~-----g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 431 ILDSFPAL-----GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp EEEEEECS-----CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred EEEEEecC-----CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 77777743 112344678999999998762 24999998865 2111110000 01 123478
Q ss_pred eEEEEcCCCCEEEEEec-----CCcEEEEEcccccee
Q psy12802 273 SALSWKRDGSRIACGGL-----CGSVELFESVLKRTI 304 (1637)
Q Consensus 273 ~~l~~spdg~~l~~~~~-----dg~v~iwd~~~~~~~ 304 (1637)
..+.|+|+|+.+.++.. ++.|.++|..+++..
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 89999999998776643 789999999877654
No 223
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.44 E-value=2.4e-11 Score=144.09 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=163.7
Q ss_pred ccceEEEEECCCCCeEEEEE---------CCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC---
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQ---------SDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD--- 112 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d--- 112 (1637)
...+..++| ||++++... .++.|.+|++.++ ..+.+ ..+.++.|||||+ +++++.+
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN--ARRFI-------ENATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC--CEEEE-------ESCEEEEECTTSSEEEEEEEETTT
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC--ceEEc-------ccCCCeEECCCCCEEEEEEeccCC
Confidence 456778888 999988653 2567899998874 12222 4688999999999 7776543
Q ss_pred C--cEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCC---------------------------CcEEEEEecC
Q psy12802 113 G--KIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHAD---------------------------GSIVRYYVTE 163 (1637)
Q Consensus 113 ~--~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d---------------------------g~i~iwd~~~ 163 (1637)
+ .|.+|++.+++...+..+.. +.++.|+|||+.|++++.+ ..|.+||+.+
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 2 48888999988766655555 9999999999999888742 5688898875
Q ss_pred CCCcccccccccccCCCCcEEEEecCCeEE-EEecC---------CeEEEEeCCCceeEEeeccCCCCCCccEEEEEECC
Q psy12802 164 DASNFDQQQGRVVQHPVPPYALSWPAGYIL-AAGSD---------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 233 (1637)
Q Consensus 164 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp 233 (1637)
. ..+..+.. . .+..+.|+|+.++ +++.+ ..|.++| +++. ..+.. + ..+..+ ||
T Consensus 162 ~-----~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~-----~-~~~~~~--sp 224 (347)
T 2gop_A 162 E-----EVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMFE-----K-VSFYAV--DS 224 (347)
T ss_dssp T-----EEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEEE-----E-ESEEEE--EE
T ss_pred C-----eEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCce-EEecc-----C-cceeeE--CC
Confidence 2 33234444 3 7889999996443 34333 2455556 4443 34432 2 244444 99
Q ss_pred CCCEEEEEecC-------cEEEEEeCCCCCccccCCCcccCCCcceeE-EEEcCCCCEEEEEecCCcEEEEEccccceee
Q psy12802 234 SGQAVVVGSYD-------NIKLFAWSPSKSVWEEQPNKTIPNLYTISA-LSWKRDGSRIACGGLCGSVELFESVLKRTIW 305 (1637)
Q Consensus 234 ~g~~l~~~~~d-------~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~ 305 (1637)
||+.|+.++.+ ...||.++.+... .....+...+.. +.|+ || .+++++.+|.+++| +.+++.
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-----~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-- 294 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYDGKEVM-----GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-- 294 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEECSSCEE-----ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE--
T ss_pred CCCEEEEEEccccCCccccceEEEECCCceE-----eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce--
Confidence 99988877643 2234444322110 111223456776 8999 88 88999999999999 852211
Q ss_pred eCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcE-EEeecc
Q psy12802 306 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTL-LLGDLH 369 (1637)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i-~i~d~~ 369 (1637)
..+... ...|.++.|+| ..+++...+++. .||.++
T Consensus 295 ---------------------------~~~~~~-~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 295 ---------------------------KPIAKG-RHWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ---------------------------EEEECS-SSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred ---------------------------EEEecC-CCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 111111 23688899999 544444555544 666554
No 224
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=1.9e-12 Score=140.94 Aligned_cols=196 Identities=16% Similarity=0.060 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
.....+|..+...|++++|+..|.++... +|+ .+.++..+|.++...|++++|+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~a~~~lg~~~~~~g~~~~A~~ 60 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE------------------------NPQ-DPEALYWLARTQLKLGLVNPALE 60 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------------SSS-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 35568899999999999999988876544 666 78899999999999999999998
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhCCchH
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEE-----------NKFKEAERLYLIIGEPDL 1107 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------g~~~~A~~~y~~~~~~~~ 1107 (1637)
.|.++...+ |.....+..+|..+..+ |++++|+..|.++
T Consensus 61 ~~~~al~~~-------------------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a----- 110 (217)
T 2pl2_A 61 NGKTLVART-------------------------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA----- 110 (217)
T ss_dssp HHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhC-------------------------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH-----
Confidence 888764322 55577888999999988 7777777765542
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcC
Q psy12802 1108 AISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNG 1187 (1637)
Q Consensus 1108 ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~ 1187 (1637)
++ ..| ....++..+|..+...|++++|+..|.++ +... .
T Consensus 111 --------------l~----~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------l~~~-~ 149 (217)
T 2pl2_A 111 --------------ER----VNP-RYAPLHLQRGLVYALLGERDKAEASLKQA---------------------LALE-D 149 (217)
T ss_dssp --------------HH----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHC-C
T ss_pred --------------HH----hCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHH---------------------Hhcc-c
Confidence 11 133 34678999999999999999999999998 4444 5
Q ss_pred CccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHH
Q psy12802 1188 GQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAE 1267 (1637)
Q Consensus 1188 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 1267 (1637)
++.++..+|..+...|++++|+..|.++ + ...|..+.++..+|..+...|++++|+
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------------l---~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKA---------------------L---EQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------------H---HHSTTCHHHHHHHHHHHTC--------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------H---HhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 6667888999999999999988888665 1 125677899999999999999999999
Q ss_pred HHHHHcC
Q psy12802 1268 TQFIKAN 1274 (1637)
Q Consensus 1268 ~~~~~a~ 1274 (1637)
..|.++.
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9998874
No 225
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.7e-12 Score=144.80 Aligned_cols=225 Identities=14% Similarity=0.081 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
..+..+|..+...|++++|+.+|.++... . . .+.++..+|.+|...|++++|++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------~-~-~~~~~~~~~~~~~~~~~~~~A~~ 59 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------H-K-DITYLNNRAAAEYEKGEYETAIS 59 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------S-C-CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------------h-c-cHHHHHHHHHHHHHcccHHHHHH
Confidence 45567888999999999999888765322 1 2 45689999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhc-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHL-NVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
.|.++.... .... +.+....++..+|..+...|++++|+..|.++.........+.+.|+
T Consensus 60 ~~~~a~~~~-------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 120 (258)
T 3uq3_A 60 TLNDAVEQG-------------------REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120 (258)
T ss_dssp HHHHHHHHH-------------------HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHhC-------------------cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhH
Confidence 998754332 1211 12334788999999999999999999999986554444567888899
Q ss_pred HHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHH
Q psy12802 1118 YENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPV 1195 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l 1195 (1637)
+++|+..+++... +....++..+|..+...|++++|+.+|.++ +...+.+..++..+
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~~~~~~~l 179 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM---------------------IKRAPEDARGYSNR 179 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HhcCcccHHHHHHH
Confidence 9999999987533 445678999999999999999999999998 33334455667788
Q ss_pred HHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1196 VYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1196 ~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|..+...|++++|++.|.++ + ...+..+.++..+|..|...|++++|+..|.++
T Consensus 180 ~~~~~~~~~~~~A~~~~~~a-------------------l-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKA-------------------I-----EKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------------------H-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH-------------------H-----HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888888888887654 1 114556889999999999999999999999987
No 226
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.42 E-value=4.6e-11 Score=140.56 Aligned_cols=227 Identities=11% Similarity=0.045 Sum_probs=158.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECC----CeEEEEEcCCCC
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSD----NIIFIYKLGDDW 79 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d----~~i~iw~~~~~~ 79 (1637)
...+.+++|+|+|++++++..++.|++||..+++ +...+.+++|+|+|+.+++...+ +.|.+||..++.
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 3456899999999988888888999999988765 34679999999999877776665 689999987641
Q ss_pred CCceeEeeccCCCCCEEEEEEcCCCC-EEEEeC------CCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEE-e
Q psy12802 80 GDKKVICNKFIQQCPVTTMVWLADGP-IIYGQS------DGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG-H 151 (1637)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~------d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~ 151 (1637)
...+.....+...+.+++++|+|+ +++... .+.|..+|..+++...+..+...+.+++|+|+|+.++++ +
T Consensus 124 --~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 124 --LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp --CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred --EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeC
Confidence 111111123456799999999999 554432 356777777776665554455568899999999866544 5
Q ss_pred CCCcEEEEEecCCCCcccccccc--------cccCCCCcEEEEecCC-eE-EEEecCCeEEEEeCCCceeEEeeccCC-C
Q psy12802 152 ADGSIVRYYVTEDASNFDQQQGR--------VVQHPVPPYALSWPAG-YI-LAAGSDRIVTIYESDGRVHRIFDYTAP-H 220 (1637)
Q Consensus 152 ~dg~i~iwd~~~~~~g~~~~~~~--------~~~~~~~v~~~~~~~~-~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~-~ 220 (1637)
.++.|.+|++...+ ..... +.++ ..+..++++++ .+ ++...++.|.+||.+++.+..+..+.. .
T Consensus 202 ~~~~i~~~d~~~~g----~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~ 276 (333)
T 2dg1_A 202 TANRLHRIALEDDG----VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDE 276 (333)
T ss_dssp GGTEEEEEEECTTS----SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGG
T ss_pred CCCeEEEEEecCCC----cCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCcc
Confidence 57899999996432 11111 1112 46788999873 44 444567899999988888877764311 0
Q ss_pred CCCccEEEEEECCCCCEEEEEecC
Q psy12802 221 YKEREFTVACSSPSGQAVVVGSYD 244 (1637)
Q Consensus 221 ~~~~~i~~~~~sp~g~~l~~~~~d 244 (1637)
.+...+.+++|+|||+.|++++.+
T Consensus 277 g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 GHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ccccCcceEEECCCCCEEEEEeCc
Confidence 111257899999998877766655
No 227
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=4.6e-11 Score=143.18 Aligned_cols=236 Identities=12% Similarity=0.123 Sum_probs=161.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
|..+...|++++|+.+|.++. .++...+..+.....+..++..+ ..+|+++.|+..|.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~a~~~~~lg~~y-------------~~~~~~~~A~~~~~--- 165 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAE------KELPFVSDDIEKAEFHFKVAEAY-------------YHMKQTHVSMYHIL--- 165 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH------TTGGGCCCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHH---
T ss_pred HHHHHHHCCHHHHHHHHHHHH------HHHhhCCChHHHHHHHHHHHHHH-------------HHcCCcHHHHHHHH---
Confidence 677889999999999998873 22222221112233444444444 44455555555544
Q ss_pred ChHHHHHHHHHhCC--CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHH
Q psy12802 941 VYDKCIDLTRKINP--KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQ 1018 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~--~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~ 1018 (1637)
+|++++..... +........+|.++...|++++|+.+|.++ +++.+...++.....
T Consensus 166 ---~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 166 ---QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA-------------------LELAMDIQNDRFIAI 223 (378)
T ss_dssp ---HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH-------------------HHHHHHcCCHHHHHH
Confidence 56666555321 234556778999999999999999998664 344444444433566
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy12802 1019 HVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERL 1098 (1637)
Q Consensus 1019 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 1098 (1637)
++..+|.+|...|++++|+++|.++ +++.+...+ +....++..+|.++..+|++++|+.+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~a-------------------l~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 283 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKA-------------------AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQF 283 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-------------------HHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8999999999999999999999775 333333333 44488899999999999999999999
Q ss_pred HHHhCC-------ch--HH----HHHHHhcCC---HHHHHHHHHhhCC-CchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1099 YLIIGE-------PD--LA----ISMFKNQRQ---YENMIKLVRNYHP-DLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1099 y~~~~~-------~~--~a----i~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
|.++-. +. .. -.+|...++ +.+|+.++++... +.....+..+|..|...|++++|..+|.++
T Consensus 284 ~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 284 IEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 988321 11 11 123556666 7788888877443 344567788899999999999999988887
No 228
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.41 E-value=8.7e-12 Score=142.14 Aligned_cols=225 Identities=9% Similarity=-0.010 Sum_probs=131.0
Q ss_pred HccCHHHHHHHHHhhc--cccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCH-----HHHHHHHHHcCCHHHHHHHHHh
Q psy12802 996 KAKQWKKAVQILQVIT--NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMH-----EQIVDMYHQTGQWEKAYAIAEQ 1068 (1637)
Q Consensus 996 ~~~~~~~A~~l~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~y~~~g~~~~A~~~~~~ 1068 (1637)
..|++.+|+..++... .|+...+....++.+|...|++++|+..+...... ..+..+|.+.+++++|++.+++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3445555555544422 23312345566788888888888888877664332 3356677778888888888776
Q ss_pred hcC---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy12802 1069 HLN---VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECE 1145 (1637)
Q Consensus 1069 ~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~ 1145 (1637)
... .|..+.+++.+|..+...|++++|++.|.+.. ...++..+|..|.
T Consensus 91 ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~-----------------------------~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 91 EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD-----------------------------SLECMAMTVQILL 141 (291)
T ss_dssp HHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCC-----------------------------SHHHHHHHHHHHH
T ss_pred HHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCC-----------------------------CHHHHHHHHHHHH
Confidence 532 25567788888888888888888888766511 1344555566666
Q ss_pred HccCHHHHHHHHHHccCH------HH----HHHHHHhcCCHHHHHHHHHh-----cCCccchHHHHHHHHHhcCcchHHH
Q psy12802 1146 ESKNYKQAEKYYLDCNEW------KL----AIKMYRSLNLWEDAYRIALS-----NGGQEAVEPVVYLWAKSLGGDSAVR 1210 (1637)
Q Consensus 1146 ~~g~~~~A~~~y~~a~~~------~~----~~~~y~~~g~~~~A~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~ 1210 (1637)
..|++++|++.|.++... .. .+.++...|++++|+.++++ +.+..++..+|..+.+.|++++|+.
T Consensus 142 ~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555110 00 11122222334444433332 3344455666666666666666666
Q ss_pred HHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHH-HHHHHHc
Q psy12802 1211 LLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEA-ETQFIKA 1273 (1637)
Q Consensus 1211 ~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A-~~~~~~a 1273 (1637)
.|.++ + ...|..++++..+|..+...|++.++ .+.+.++
T Consensus 222 ~l~~a---------------------l---~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 222 VLQEA---------------------L---DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHH---------------------H---HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHH---------------------H---HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66443 1 12455667777777777777776653 3444444
No 229
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1e-11 Score=162.95 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=162.1
Q ss_pred CceeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCc----ccc--eEEEEECCCCCeEEEEECCCe-----------
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNV-----AGIWAWRGQNGRK----SYV--VKGLAFSPDSTKLAVAQSDNI----------- 69 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d-----~~i~vwd~~~~~h----~~~--V~~~~~spd~~~la~~~~d~~----------- 69 (1637)
..+..++|||||++|+.+..+ ..|++||+.+++. ... +.+++|||| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 367899999999999987543 4699999998872 122 357899999 99998876654
Q ss_pred ---EEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC-----CcEEEEEcCCC--c-eeeecccCCcEEE
Q psy12802 70 ---IFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD-----GKIKAAHVKAN--K-TQTLYASNSFVVA 137 (1637)
Q Consensus 70 ---i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d-----~~v~vwd~~~~--~-~~~~~~~~~~v~~ 137 (1637)
|++|++.++......+.....+...+.++.|||||+ +++.+.+ ..|++||+.++ + ...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 889999775332334443334445689999999999 7765543 48999999987 6 5666666655555
Q ss_pred EEEecCCCeEEEEeCC----CcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-eEEEEecCCeEEEEe--CCCce
Q psy12802 138 LCLNVRGAGVLSGHAD----GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-YILAAGSDRIVTIYE--SDGRV 210 (1637)
Q Consensus 138 l~~s~~g~~l~s~~~d----g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~i~iwd--~~~~~ 210 (1637)
. ++|+|+.|+..+.+ +.|.+||+.+.. + .....+..+...+..++|+.+ .+++...|+..++|. .+|+.
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~--~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-P--RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSS-C--EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-c--ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence 5 45999998888764 459999987531 1 222233344455667888766 556677788877775 56777
Q ss_pred eEEeeccCCCCCCccEEEEEECCCCCEEEEE--ecC--c-EEEEEeCCC
Q psy12802 211 HRIFDYTAPHYKEREFTVACSSPSGQAVVVG--SYD--N-IKLFAWSPS 254 (1637)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~--~~d--~-i~i~~~~~~ 254 (1637)
...+..+ ....+..++++|+++.++.. +.. + +.+||+.++
T Consensus 398 ~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 398 AGAVSLP----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEECBCS----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred eeeccCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7766532 34568889999999866543 222 2 677776543
No 230
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.40 E-value=8.7e-12 Score=146.44 Aligned_cols=230 Identities=11% Similarity=0.027 Sum_probs=170.0
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
|........+|..+...|++++|+.+|.++... .|+ ...++..+|..|...|+++
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~-~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------------DPK-DIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------CcC-CHHHHHHHHHHHHHcCCHH
Confidence 334556678999999999999999988775322 444 5778999999999999999
Q ss_pred HHHHHHHhccCHH--------HH--------------HH-HHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcC
Q psy12802 1035 TAEKIYSHCDMHE--------QI--------------VD-MYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEEN 1090 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~--------~~--------------~~-~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g 1090 (1637)
+|++.|.++.... .. .. ++...|++++|++.+++... .+....++..+|..+...|
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999874321 11 22 37788889999998887543 2445788889999999999
Q ss_pred CHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHH
Q psy12802 1091 KFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMY 1170 (1637)
Q Consensus 1091 ~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y 1170 (1637)
++++|+..|.++- + ..| ....++..+|..+...|++++|+.+|.++
T Consensus 187 ~~~~A~~~~~~~~-------------------~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------- 232 (327)
T 3cv0_A 187 NYDSAAANLRRAV-------------------E----LRP-DDAQLWNKLGATLANGNRPQEALDAYNRA---------- 232 (327)
T ss_dssp CHHHHHHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred cHHHHHHHHHHHH-------------------H----hCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence 9999988866631 1 122 23578899999999999999999999988
Q ss_pred HhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcC-------C
Q psy12802 1171 RSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGM-------K 1243 (1637)
Q Consensus 1171 ~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~-------~ 1243 (1637)
+...+.+..++..++..+...|++++|++.|.++. ++..... .
T Consensus 233 -----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-------------------~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 233 -----------LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI-------------------YMQVGGTTPTGEASR 282 (327)
T ss_dssp -----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHHTTSCC-----CC
T ss_pred -----------HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------HhCCccccccccchh
Confidence 33334445567778888888888888888886541 1111000 0
Q ss_pred CCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1244 SKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1244 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
...+.++..+|..+...|++++|...|.++
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 015788899999999999999999999887
No 231
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=3e-10 Score=131.15 Aligned_cols=269 Identities=9% Similarity=-0.029 Sum_probs=186.1
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR--------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~--------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
+.+.+.+++++|+|+++++...++.|.+||.. +. +...+.+++++|+|...++...++.|..|+....
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--- 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--- 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC---
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc---
Confidence 34678999999999988887777899999977 43 2356899999999987777666888999987531
Q ss_pred ceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceee--ecccCCcEEEEEEecCCCeEEEEeCCCcEEE
Q psy12802 82 KKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQT--LYASNSFVVALCLNVRGAGVLSGHADGSIVR 158 (1637)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~i 158 (1637)
.... ........+.++++.|+|. +++...++.|.+||. +++... ...+...+.+++++++|...++...++.|..
T Consensus 89 ~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 IKEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp EEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 1222 1222456789999999999 666666789999998 665532 3344567899999999988877777889999
Q ss_pred EEecCCCCccccccc-ccccCCCCcEEEEecC-CeEEEEe-cCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCC
Q psy12802 159 YYVTEDASNFDQQQG-RVVQHPVPPYALSWPA-GYILAAG-SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG 235 (1637)
Q Consensus 159 wd~~~~~~g~~~~~~-~~~~~~~~v~~~~~~~-~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 235 (1637)
||. +. .... ........+.++++++ +.+.++. .++.|.+||.+++.. .+... .....+..++++|+|
T Consensus 167 ~~~-~g-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~---~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 167 ITE-SG-----DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEIT-EFKIP---TPNARPHAITAGAGI 236 (299)
T ss_dssp ECT-TC-----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE-EEECS---STTCCEEEEEECSTT
T ss_pred EcC-CC-----cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEE-EEECC---CCCCCceeEEECCCC
Confidence 987 32 2222 1233456788999987 4455544 578999999866543 33322 234578899999999
Q ss_pred CEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccc
Q psy12802 236 QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 236 ~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
+..++...++ |..|+.+.....+ ....+...+.++.+ ++|...++.+ .+.+..++..++
T Consensus 237 ~l~v~~~~~~~i~~~d~~g~~~~~-----~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTSNNIIEEY-----PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp CEEEEETTTTEEEEEETTTEEEEE-----ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CEEEeccCCceEEEECCCCceEEE-----eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9666664545 8888863211111 11123357889999 8888666544 677777776543
No 232
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=1.1e-11 Score=141.16 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=119.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHhCC-----hHHHHHHHHHccCHHHHHHHHHhhc----cccchHHHHHHHHHHHHHhCCH
Q psy12802 963 EWGDHLIENKQYNAAINHYIEAGK-----NNKALDTSIKAKQWKKAVQILQVIT----NKQDIAQHVKTLAQHFKTVKDY 1033 (1637)
Q Consensus 963 ~~~~~l~~~~~~~~A~~~~~~~~~-----~~~ai~~~~~~~~~~~A~~l~~~~~----~~~~~~~~~~~la~~~~~~g~~ 1033 (1637)
.++..|...|++++|+..+..... .......+...+++++|++.++.+. .|+ .+.++..+|..|...|++
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHCCCH
Confidence 345555555555555554433211 1111223334444555555554421 354 677788888888888888
Q ss_pred HHHHHHHHhccCH---HHHHHHHHHcCCHHHHHHHHHhhcCh-hhHHHHHHHHH----HHHHHcCCHHHHHHHHHHhCCc
Q psy12802 1034 KTAEKIYSHCDMH---EQIVDMYHQTGQWEKAYAIAEQHLNV-GEIKATFIQKC----KQLEEENKFKEAERLYLIIGEP 1105 (1637)
Q Consensus 1034 ~~A~~~~~~~~~~---~~~~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~a----~~~~~~g~~~~A~~~y~~~~~~ 1105 (1637)
++|+++|.+.... ...+.+|.+.|++++|++.+++.... |.. ....++ ..+...|++++|+..|.++
T Consensus 118 ~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~--- 192 (291)
T 3mkr_A 118 DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA--TLTQLATAWVSLAAGGEKLQDAYYIFQEM--- 192 (291)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTHHHHHHHHHHHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhCchHHHHHHHHHHHH---
Confidence 8888888773222 22345555555555555555543221 111 111111 2222234444444443321
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHh
Q psy12802 1106 DLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALS 1185 (1637)
Q Consensus 1106 ~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~ 1185 (1637)
++ ..| ....+++.+|..+...|++++|+..|.++ +...
T Consensus 193 -------------------l~-~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~a---------------------l~~~ 230 (291)
T 3mkr_A 193 -------------------AD-KCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEA---------------------LDKD 230 (291)
T ss_dssp -------------------HH-HSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHC
T ss_pred -------------------HH-hCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhC
Confidence 11 133 33678999999999999999999999998 7777
Q ss_pred cCCccchHHHHHHHHHhcCcchH-HHHHHHh
Q psy12802 1186 NGGQEAVEPVVYLWAKSLGGDSA-VRLLNRL 1215 (1637)
Q Consensus 1186 ~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 1215 (1637)
+.+++++.+++..+...|+.+++ .+++.++
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78888889999999999988764 5666554
No 233
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=5.5e-10 Score=140.62 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=91.6
Q ss_pred CCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChh
Q psy12802 1243 KSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFS 1322 (1637)
Q Consensus 1243 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~ 1322 (1637)
.|....++..+|..+...|++++|...|.++ .+..|.....+|...+.++...|+++
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a-----------------------l~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRL-----------------------LAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------hCccccCchHHHHHHHHHHHHhcCHH
Confidence 4677889999999999999999999999987 22345433468888888888889999
Q ss_pred hHHHHHHHhCCh-----H----HHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHH
Q psy12802 1323 KFETLLLRAHKV-----D----LIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQ 1393 (1637)
Q Consensus 1323 ~A~~~~~~a~~~-----~----~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1393 (1637)
+|...|.++-.. . .+.-.|...|++++|..+.++.+ ...|.+...+...+..+.+
T Consensus 374 ~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al----------------~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 374 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL----------------KKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHh
Confidence 999888876321 1 11222335677777777766521 1134455668888888888
Q ss_pred cCCHHHHHHHHHhcC
Q psy12802 1394 NGEFYNAVECYLKIK 1408 (1637)
Q Consensus 1394 ~g~~~~A~~~~~~~~ 1408 (1637)
.|++++|..+|.++.
T Consensus 438 ~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 438 LNEDNNTRVLFERVL 452 (530)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHH
Confidence 899999988888765
No 234
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.39 E-value=6.1e-12 Score=136.79 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+..+..+|..+...|++++|+..|+++...+ |..+.++..+|..+..+|++++|
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~a~~~lg~~~~~~g~~~~A 58 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-------------------------PQDPEALYWLARTQLKLGLVNPA 58 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------------------------SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45578889999999999999998888765432 56688899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHc-----------cCHHHHHHHHHHccCHH
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEES-----------KNYKQAEKYYLDCNEWK 1164 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~y~~a~~~~ 1164 (1637)
+..|.++ ++ ..| ....++..+|..+... |++++|+..|.++
T Consensus 59 ~~~~~~a-------------------l~----~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---- 110 (217)
T 2pl2_A 59 LENGKTL-------------------VA----RTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA---- 110 (217)
T ss_dssp HHHHHHH-------------------HH----HCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHH-------------------HH----hCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH----
Confidence 9886653 11 123 3367889999999999 9999999999988
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCC
Q psy12802 1165 LAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKS 1244 (1637)
Q Consensus 1165 ~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~ 1244 (1637)
+...+.+..++..+|..+...|++++|+..|.++ +++ .
T Consensus 111 -----------------l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------l~~-----~- 148 (217)
T 2pl2_A 111 -----------------ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA-------------------LAL-----E- 148 (217)
T ss_dssp -----------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHH-----C-
T ss_pred -----------------HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH-------------------Hhc-----c-
Confidence 5556667778888999999999999998888655 111 2
Q ss_pred CcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhH
Q psy12802 1245 KLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKF 1324 (1637)
Q Consensus 1245 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A 1324 (1637)
..++++..+|..|...|++++|+..|.++ .+.+|+ .+.++..++..+...|++++|
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------------------l~~~P~-~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKA-----------------------LEQAPK-DLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------------HHHSTT-CHHHHHHHHHHHTC-------
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------HHhCCC-ChHHHHHHHHHHHHccCHHHH
Confidence 56888999999999999999999999988 334565 468899999999999999999
Q ss_pred HHHHHHhC
Q psy12802 1325 ETLLLRAH 1332 (1637)
Q Consensus 1325 ~~~~~~a~ 1332 (1637)
+..|.++.
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 98887653
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.9e-12 Score=124.52 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=114.1
Q ss_pred hhhhhhhhcccccccHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHhcCHhHHHHHHHhhcCcchhHHHHHHhhhhhhhh
Q psy12802 696 DESLIEFGTAVHDSDFGKAILYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWS 775 (1637)
Q Consensus 696 ~~~~~~~~~~l~~~~~~~A~~~~~~~~~~~~~~~~~w~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~ 775 (1637)
..+...|..+++.|+++.|+.+++.+ +++.+|+.||+.|+..+++++|++||.+.+|++++.||..+....++.
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L- 79 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKL- 79 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH-
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHH-
Confidence 45678899999999999999999988 457999999999999999999999999999999999998776554444
Q ss_pred cccCCCCCCchHHHHHHHHHHhcCHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHhcCc
Q psy12802 776 KENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMYLKLYKWEDALSLAETNNY 838 (1637)
Q Consensus 776 ~~~~~~~~~~~~~~~a~~a~~~~~~~~A~~~~~~~~~~~~a~~~~~~l~~~~~a~~~~~~~~~ 838 (1637)
..++.++...|++..|..+++..|+++++++++.+.|+|++|..+++..+.
T Consensus 80 ------------~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~ 130 (177)
T 3mkq_B 80 ------------SKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGD 130 (177)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ------------HHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCc
Confidence 578999999999999999999999999999999999999999999998664
No 236
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.37 E-value=1.6e-09 Score=125.09 Aligned_cols=287 Identities=12% Similarity=0.016 Sum_probs=190.2
Q ss_pred CeEEEEEcCCCCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeC
Q psy12802 33 AGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQS 111 (1637)
Q Consensus 33 ~~i~vwd~~~~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~ 111 (1637)
+.+..|.+.. +...+.+++++|+|+..++...++.|.+||.. + .........+...+.+++++++|. +++...
T Consensus 3 g~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 76 (299)
T 2z2n_A 3 FKLQELNLTN--QDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDGEVWFTENA 76 (299)
T ss_dssp EEEEEEECCS--SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred ceEEEEcCCC--cCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCCCEEEeCCC
Confidence 4555665543 44679999999999877766667899999976 3 111112223457799999999999 555556
Q ss_pred CCcEEEEEcCCCceee--ecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccc-cccccCCCCcEEEEec
Q psy12802 112 DGKIKAAHVKANKTQT--LYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ-GRVVQHPVPPYALSWP 188 (1637)
Q Consensus 112 d~~v~vwd~~~~~~~~--~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~-~~~~~~~~~v~~~~~~ 188 (1637)
++.|..||.. ++... +......+.+++++|+|..+++...++.|.+||. +. ... .....+...+..++++
T Consensus 77 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-----~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 77 ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-----KIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-----CEEEEECSSTTCCEEEEEEC
T ss_pred CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC-----CEEEecCCCCCCCCceEEEc
Confidence 7889999987 44422 2235567999999999988888777889999987 32 221 1222345678999998
Q ss_pred CC-eEEEE-ecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcc
Q psy12802 189 AG-YILAA-GSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT 265 (1637)
Q Consensus 189 ~~-~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~ 265 (1637)
++ .+..+ ..++.|..||.+++... +... .....+..++++|+|+..++...++ |.+|+. .+... . ...
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--~--~~~ 220 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITESGDITE-FKIP---TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--E--FKI 220 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--E--EEC
T ss_pred CCCCEEEEeCCCCEEEEEcCCCcEEE-eeCC---CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--E--EEC
Confidence 74 55554 45689999998665543 3221 2334688999999999766665555 888876 32211 0 111
Q ss_pred cCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeE
Q psy12802 266 IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITD 345 (1637)
Q Consensus 266 ~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~ 345 (1637)
......+.++.++|+|+.+++...++.|..||.. ++.. .+ .+. .....+.+
T Consensus 221 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-------~~---------~~~------------~~~~~~~~ 271 (299)
T 2z2n_A 221 PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-------EY---------PIQ------------IKSAEPHG 271 (299)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-------EE---------ECS------------SSSCCEEE
T ss_pred CCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-------EE---------eCC------------CCCCccce
Confidence 1234578899999999966666578899999972 2210 00 000 01225778
Q ss_pred EEEecCceEEEEeCCCcEEEeecccc
Q psy12802 346 VAIMGNDRYLVARTPDTLLLGDLHRN 371 (1637)
Q Consensus 346 v~~s~~~~~lv~~~~~~i~i~d~~~~ 371 (1637)
+.+ +++.+.++...+.+..++..+.
T Consensus 272 i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 272 ICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp EEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred EEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 888 8888888866788888776654
No 237
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=3.4e-11 Score=135.63 Aligned_cols=229 Identities=13% Similarity=0.021 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHH
Q psy12802 1074 EIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQA 1153 (1637)
Q Consensus 1074 ~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 1153 (1637)
.....+..+|..+...|++++|+.+|.++ ++. . ....++..+|..+...|++++|
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a-------------------~~~---~---~~~~~~~~~~~~~~~~~~~~~A 57 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKA-------------------WEL---H---KDITYLNNRAAAEYEKGEYETA 57 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHH---S---CCTHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHH-------------------HHh---h---ccHHHHHHHHHHHHHcccHHHH
Confidence 34678889999999999999999986663 111 1 1246889999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHhcC-CHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChH
Q psy12802 1154 EKYYLDCNEWKLAIKMYRSLN-LWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFD 1232 (1637)
Q Consensus 1154 ~~~y~~a~~~~~~~~~y~~~g-~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~ 1232 (1637)
+.+|.++-.. .-..+ ++.. ...++..+|..+...|++++|++.|.++..+..-...+.+.|+++
T Consensus 58 ~~~~~~a~~~------~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 122 (258)
T 3uq3_A 58 ISTLNDAVEQ------GREMRADYKV---------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHH------HHHTTCCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHh------CcccccchHH---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHH
Confidence 9999987211 00000 0000 024566778888888888888888877666555566777888888
Q ss_pred HHHHHHHhcC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHH
Q psy12802 1233 FAFELAKIGM--KSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLN 1310 (1637)
Q Consensus 1233 ~a~~l~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 1310 (1637)
+|+..++... .+..+.++..+|..+...|++++|+..|.++ +. ..|. .+.++..
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------~~-----------------~~~~-~~~~~~~ 178 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM------IK-----------------RAPE-DARGYSN 178 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HH-----------------HCTT-CHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH------Hh-----------------cCcc-cHHHHHH
Confidence 8888877653 5667889999999999999999999999887 22 3444 4688899
Q ss_pred hHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHH
Q psy12802 1311 QSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQ 1390 (1637)
Q Consensus 1311 ~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 1390 (1637)
+|..+...|++++|+..|.++ +++ .|. ....+..+|..
T Consensus 179 l~~~~~~~~~~~~A~~~~~~a-------------------l~~----~~~-------------------~~~~~~~l~~~ 216 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKA-------------------IEK----DPN-------------------FVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------------------HHH----CTT-------------------CHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-------------------HHh----CHH-------------------HHHHHHHHHHH
Confidence 999999999998888777443 222 122 23458899999
Q ss_pred HHHcCCHHHHHHHHHhcC
Q psy12802 1391 WEQNGEFYNAVECYLKIK 1408 (1637)
Q Consensus 1391 ~~~~g~~~~A~~~~~~~~ 1408 (1637)
+.+.|++++|+.+|.++.
T Consensus 217 ~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 217 QIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 999999999999999766
No 238
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.36 E-value=6.8e-11 Score=155.17 Aligned_cols=265 Identities=9% Similarity=0.075 Sum_probs=169.2
Q ss_pred cCCCCEEEEEeCCC-----eEEEEEcC---CCC-------------cccceEEEEECCCCCeEEEEECC-----CeEEEE
Q psy12802 20 NLDIVRLRSEGNVA-----GIWAWRGQ---NGR-------------KSYVVKGLAFSPDSTKLAVAQSD-----NIIFIY 73 (1637)
Q Consensus 20 spdg~~la~~~~d~-----~i~vwd~~---~~~-------------h~~~V~~~~~spd~~~la~~~~d-----~~i~iw 73 (1637)
+|||++++....++ .|++.+.. .+. +...+.+++|||||++||.++++ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 49999998765443 35555544 332 12368899999999999977654 469999
Q ss_pred EcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCc--------------EEEEEcCCCce--eeec---ccCC
Q psy12802 74 KLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGK--------------IKAAHVKANKT--QTLY---ASNS 133 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~--------------v~vwd~~~~~~--~~~~---~~~~ 133 (1637)
|+.++. .+.. ..+...+.+++|+|| + |++++.++. |++|++.++.. ..+. .+..
T Consensus 195 dl~tg~----~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 195 GVADGK----PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp ETTTCC----EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred ECCCCC----CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 998852 2211 111112357899999 8 887776543 89999988763 2222 2334
Q ss_pred cEEEEEEecCCCeEEEEeCCC-----cEEEEEecCCCCccccc-ccccccCCCCcEEEEec-CCeEEEEec----CCeEE
Q psy12802 134 FVVALCLNVRGAGVLSGHADG-----SIVRYYVTEDASNFDQQ-QGRVVQHPVPPYALSWP-AGYILAAGS----DRIVT 202 (1637)
Q Consensus 134 ~v~~l~~s~~g~~l~s~~~dg-----~i~iwd~~~~~~g~~~~-~~~~~~~~~~v~~~~~~-~~~l~~~~~----d~~i~ 202 (1637)
.+.++.|||||++|++.+.++ .|++||+.++. .. ...+..+...+....+. .+.|+..+. ++.|.
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~ 344 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIV 344 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEE
Confidence 689999999999988877544 89999987631 12 45555555555555442 256666654 45699
Q ss_pred EEeCCC--ceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcC
Q psy12802 203 IYESDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR 279 (1637)
Q Consensus 203 iwd~~~--~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 279 (1637)
+||.++ .....+.. .+...+..++|+ ++.++++...++ .+||.++...... ........+.+..++++|
T Consensus 345 ~~d~~~~~~~~~~l~~----~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~---~~l~~~~~~~v~~~~~s~ 416 (741)
T 1yr2_A 345 RVDLSGSTPRFDTVVP----ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA---GAVSLPGIGSASGLSGRP 416 (741)
T ss_dssp EEECSSSSCEEEEEEC----CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE---EECBCSSSCEEEEEECCB
T ss_pred EEeCCCCccccEEEec----CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce---eeccCCCCeEEEEeecCC
Confidence 999433 23444432 233356677887 566777778787 6677665322110 011122356788999999
Q ss_pred CCCEEEEE----ecCCcEEEEEccccc
Q psy12802 280 DGSRIACG----GLCGSVELFESVLKR 302 (1637)
Q Consensus 280 dg~~l~~~----~~dg~v~iwd~~~~~ 302 (1637)
|++.|+.. ...++|++||+.+++
T Consensus 417 d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 417 GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 99866533 234789999987654
No 239
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=4.4e-11 Score=135.99 Aligned_cols=223 Identities=15% Similarity=0.069 Sum_probs=131.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12802 962 EEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYS 1041 (1637)
Q Consensus 962 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 1041 (1637)
...|..+...|++++|+.+|.++... .|+ .+.++..+|.+|...|++++|++.|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 61 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAK------------------------KYN-SPYIYNRRAVCYYELAKYDLAQKDIE 61 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHT------------------------TCC-CSTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh------------------------CCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888888888888888765221 333 44467777777778888877777777
Q ss_pred hccCH-----------HHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHH
Q psy12802 1042 HCDMH-----------EQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAI 1109 (1637)
Q Consensus 1042 ~~~~~-----------~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai 1109 (1637)
++... .....+|.+.|++++|++.+++... .|....++..+|..|...|++++|+..|.++-..
T Consensus 62 ~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 137 (272)
T 3u4t_A 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---- 137 (272)
T ss_dssp HHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS----
T ss_pred HHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc----
Confidence 66431 1223333333333333333332211 1222344444555555555544444444433211
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCc
Q psy12802 1110 SMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQ 1189 (1637)
Q Consensus 1110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~ 1189 (1637)
.+....++..+|..+...+++++|+.+|.++ +-..+.+.
T Consensus 138 --------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------------~~~~p~~~ 176 (272)
T 3u4t_A 138 --------------------TTTDPKVFYELGQAYYYNKEYVKADSSFVKV---------------------LELKPNIY 176 (272)
T ss_dssp --------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHSTTCH
T ss_pred --------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhCccch
Confidence 1223456666664444445667776666666 22333445
Q ss_pred cchHHHHHHHHHhcC---cchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCC---CCcHHHHHHHHHHHHhCCCh
Q psy12802 1190 EAVEPVVYLWAKSLG---GDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMK---SKLEEVHYKYALVLEDNGQF 1263 (1637)
Q Consensus 1190 ~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~---~~~~~~~~~~a~~~~~~g~~ 1263 (1637)
.++..++..+...++ +++|+..|.++ +++.+.... ....+++..+|..|...|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 177 IGYLWRARANAAQDPDTKQGLAKPYYEKL-------------------IEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTTCSSCTTHHHHHHH-------------------HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHH-------------------HHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 567778888888888 88888888544 222221111 11356888999999999999
Q ss_pred HHHHHHHHHc
Q psy12802 1264 NEAETQFIKA 1273 (1637)
Q Consensus 1264 ~~A~~~~~~a 1273 (1637)
++|+..|.++
T Consensus 238 ~~A~~~~~~a 247 (272)
T 3u4t_A 238 VKADAAWKNI 247 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 240
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=2.6e-11 Score=137.89 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy12802 1018 QHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAER 1097 (1637)
Q Consensus 1018 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 1097 (1637)
+.+...|..+...|++++|+..|.++... .|....++..+|..+...|++++|+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------------------------~p~~~~~~~~l~~~~~~~~~~~~A~~ 58 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK-------------------------KYNSPYIYNRRAVCYYELAKYDLAQK 58 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT-------------------------TCCCSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------------------CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 35677788888888888888887765321 13345578889999999999999988
Q ss_pred HHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHH
Q psy12802 1098 LYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWE 1177 (1637)
Q Consensus 1098 ~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~ 1177 (1637)
.|.++-.. ...++....++..+|..+...|++++|+.+|.++
T Consensus 59 ~~~~a~~~---------------------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a----------------- 100 (272)
T 3u4t_A 59 DIETYFSK---------------------VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA----------------- 100 (272)
T ss_dssp HHHHHHTT---------------------SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHhc---------------------cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH-----------------
Confidence 86663110 0112334667899999999999999999999998
Q ss_pred HHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy12802 1178 DAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVL 1257 (1637)
Q Consensus 1178 ~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~ 1257 (1637)
+...+....++..+|..+...|++++|++.|.++ ....+..+.++..+|...
T Consensus 101 ----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------------l~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 101 ----VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ------------------------IRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp ----HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG------------------------CCSSCCCHHHHHHHHHHH
T ss_pred ----HhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------hhcCCCcHHHHHHHHHHH
Confidence 3344555567778888887777777777777655 122567788999999444
Q ss_pred HhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCC---hhhHHHHHHHhCCh
Q psy12802 1258 EDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENEN---FSKFETLLLRAHKV 1334 (1637)
Q Consensus 1258 ~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~ 1334 (1637)
...+++++|+..|.++ .+..|.. +..+..++..+...|+ +++|+..|
T Consensus 153 ~~~~~~~~A~~~~~~a-----------------------~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~------ 202 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKV-----------------------LELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYY------ 202 (272)
T ss_dssp HHTTCHHHHHHHHHHH-----------------------HHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHH------
T ss_pred HHHHHHHHHHHHHHHH-----------------------HHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHH------
Confidence 4456999999888887 2334553 5777788888877777 66666655
Q ss_pred HHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch
Q psy12802 1335 DLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1335 ~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~ 1412 (1637)
++|+++.......... ....++..+|..|...|++++|+.+|.++....|
T Consensus 203 -------------~~a~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 203 -------------EKLIEVCAPGGAKYKD---------------ELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp -------------HHHHHHHGGGGGGGHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------HHHHHHHhcccccchH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 5555555432110000 0123588899999999999999999998875544
No 241
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.34 E-value=1.1e-10 Score=132.39 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=160.9
Q ss_pred ceEEEEECCCCCeEE-EEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCcee
Q psy12802 48 VVKGLAFSPDSTKLA-VAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQ 126 (1637)
Q Consensus 48 ~V~~~~~spd~~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~ 126 (1637)
...+++++|+|+..+ +.+.++.|.+|+..+. ........+...+.+++++|+|+++++..++.|.+||..++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc----ccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe
Confidence 788999999998666 4367889999987553 11111123345678899999999444444889999998877664
Q ss_pred eec-ccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC-CeEE-EEecCCeEEE
Q psy12802 127 TLY-ASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA-GYIL-AAGSDRIVTI 203 (1637)
Q Consensus 127 ~~~-~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~~l~-~~~~d~~i~i 203 (1637)
.+. .....+.+++++|+|+.+++...++.|.+|+..+. ............+.++++++ +.++ +...++.|.+
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-----TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-----SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-----eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 443 33367899999999998877777889999965432 11111223334678899987 3444 4455789999
Q ss_pred EeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCC
Q psy12802 204 YESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS 282 (1637)
Q Consensus 204 wd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 282 (1637)
||..+........ .....+..++++|+|..+++...++ |.+|+....... .....+...+.+++++|+|+
T Consensus 176 ~~~~~~~~~~~~~----~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 176 LEAESNNQVVLPF----TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-----VLPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp ECTTTCCEEECCC----SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-----ECCCCSCSCEEEEEECTTCC
T ss_pred EecCCCceEeecc----cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-----eeccCCCCCceeEEECCCCC
Confidence 9965554433321 1225688999999997777766666 888887553321 11112235788999999999
Q ss_pred EEEEEecCCcEEEEEcccc
Q psy12802 283 RIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 283 ~l~~~~~dg~v~iwd~~~~ 301 (1637)
.+++.+.++.|++++....
T Consensus 247 l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEGGGTEEEEECCCGG
T ss_pred EEEEECCCCEEEEEcCCCc
Confidence 8888889999999998644
No 242
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.34 E-value=7.8e-11 Score=133.74 Aligned_cols=227 Identities=8% Similarity=0.047 Sum_probs=159.2
Q ss_pred ceeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 13 VLQDDVFNLDIVRLR-SEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 13 ~i~~~~~spdg~~la-~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
....++++|+|++++ +.+.++.|.+|+..++. +...+.+++++|+|+.+++.. ++.|.+||..+. ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~----~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN----NQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS----CC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc----eE
Confidence 678999999999777 54677899999876543 224688999999998555544 889999997653 11
Q ss_pred EeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceee-ecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEec
Q psy12802 85 ICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQT-LYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVT 162 (1637)
Q Consensus 85 ~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~-~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~ 162 (1637)
..........+.+++++|+|+ +++...++.|.+|+..+..... .......+.+++++|+|+.+++...++.|.+||..
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 111122336789999999999 6666678899999766554422 22333467899999999977777778899999976
Q ss_pred CCCCcccccccccccCCCCcEEEEecCC-eEEEE-ecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEE
Q psy12802 163 EDASNFDQQQGRVVQHPVPPYALSWPAG-YILAA-GSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV 240 (1637)
Q Consensus 163 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~-~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 240 (1637)
.. ........+...+.+++++++ .+.++ ..++.|.+||.++........ .+...+.+++++|+|+.+++
T Consensus 180 ~~-----~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 180 SN-----NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF----TGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp TC-----CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC----CSCSCEEEEEECTTCCEEEE
T ss_pred CC-----ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc----CCCCCceeEEECCCCCEEEE
Confidence 53 221222233367889999874 55544 457899999976655444321 12346899999999997777
Q ss_pred EecCc-EEEEEeCC
Q psy12802 241 GSYDN-IKLFAWSP 253 (1637)
Q Consensus 241 ~~~d~-i~i~~~~~ 253 (1637)
.+.++ |++++...
T Consensus 251 ~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 251 DRGNDRVVKLTSLE 264 (270)
T ss_dssp EGGGTEEEEECCCG
T ss_pred ECCCCEEEEEcCCC
Confidence 77777 88888654
No 243
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.1e-09 Score=137.81 Aligned_cols=183 Identities=11% Similarity=0.093 Sum_probs=121.9
Q ss_pred HHHHHHHhhcC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHH
Q psy12802 1061 KAYAIAEQHLN--VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLL 1138 (1637)
Q Consensus 1061 ~A~~~~~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 1138 (1637)
+|.+++++... .|....++..+|..+...|++++|..+|.++- + ..|.....+|.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al----------------------~-~~p~~~~~~~~ 360 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL----------------------A-IEDIDPTLVYI 360 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------H-SSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------C-ccccCchHHHH
Confidence 56666655442 35668899999999999999999999877631 1 12222235889
Q ss_pred HHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHH-HHHhcCcchHHHHHHHhcc
Q psy12802 1139 HLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYL-WAKSLGGDSAVRLLNRLSL 1217 (1637)
Q Consensus 1139 ~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~ 1217 (1637)
.+|..+...|++++|...|.+|-. ........+...+.. +...|++++|.++|.++
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~Al~---------------------~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a-- 417 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKARE---------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELG-- 417 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---------------------CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh---------------------ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH--
Confidence 999999999999999999998822 000111111111111 22355555555555433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHh
Q psy12802 1218 LESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIAN 1297 (1637)
Q Consensus 1218 ~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~ 1297 (1637)
++ ..|..+.++..++..+...|++++|...|.++ +...
T Consensus 418 -----------------l~-----~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a------l~~~-------------- 455 (530)
T 2ooe_A 418 -----------------LK-----KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV------LTSG-------------- 455 (530)
T ss_dssp -----------------HH-----HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH------HHSC--------------
T ss_pred -----------------HH-----HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH------Hhcc--------------
Confidence 11 13567889999999999999999999999987 2210
Q ss_pred hhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1298 EHDPTSIGDILLNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1298 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
..+|+....++...+.+....|+.+.+..++.++
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123344568888888888889999888777554
No 244
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=6.4e-11 Score=139.40 Aligned_cols=239 Identities=12% Similarity=0.047 Sum_probs=182.4
Q ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCC
Q psy12802 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENK 1091 (1637)
Q Consensus 1012 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 1091 (1637)
+|+ ...+|..+|.++...|++++|+.+|.++...+ |....+|+.+|.+|..+|+
T Consensus 93 ~p~-~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------------------------P~~~~a~~~~g~~l~~~g~ 146 (382)
T 2h6f_A 93 SDK-FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------------------------AANYTVWHFRRVLLKSLQK 146 (382)
T ss_dssp CHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTC
T ss_pred Chh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------------------------ccCHHHHHHHHHHHHHccc
Confidence 344 67889999999999999999998888764322 5668899999999999997
Q ss_pred -HHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHH
Q psy12802 1092 -FKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMY 1170 (1637)
Q Consensus 1092 -~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y 1170 (1637)
+++|+..|.++ ++ ..| ....+|..+|.++...|++++|+..|.++
T Consensus 147 d~~eAl~~~~~a-------------------l~----l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~ka---------- 192 (382)
T 2h6f_A 147 DLHEEMNYITAI-------------------IE----EQP-KNYQVWHHRRVLVEWLRDPSQELEFIADI---------- 192 (382)
T ss_dssp CHHHHHHHHHHH-------------------HH----HCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHH----------
T ss_pred CHHHHHHHHHHH-------------------HH----HCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHH----------
Confidence 99999886653 11 233 33689999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHH
Q psy12802 1171 RSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVH 1250 (1637)
Q Consensus 1171 ~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~ 1250 (1637)
+...+.+..++..+|.++...|++++|+..|.++ ....+....+|
T Consensus 193 -----------l~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a------------------------l~l~P~~~~a~ 237 (382)
T 2h6f_A 193 -----------LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL------------------------LKEDVRNNSVW 237 (382)
T ss_dssp -----------HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH------------------------HHHCTTCHHHH
T ss_pred -----------HHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH------------------------HHhCCCCHHHH
Confidence 7777788889999999999999999999999765 12367788999
Q ss_pred HHHHHHHHh-CCChHHHH-----HHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcC--Chh
Q psy12802 1251 YKYALVLED-NGQFNEAE-----TQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENE--NFS 1322 (1637)
Q Consensus 1251 ~~~a~~~~~-~g~~~~A~-----~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~--~~~ 1322 (1637)
..+|.+|.. .|.+++|+ ..|.+| ..++|. .+.+|..++..+...| +++
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~A-----------------------l~l~P~-~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEM-----------------------IKLVPH-NESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHH-----------------------HHHSTT-CHHHHHHHHHHHTTTCGGGCH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHH-----------------------HHHCCC-CHHHHHHHHHHHHccCccchH
Confidence 999999999 56658885 445544 345676 4678888888888877 355
Q ss_pred hHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcC-------
Q psy12802 1323 KFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNG------- 1395 (1637)
Q Consensus 1323 ~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g------- 1395 (1637)
+|+..+. ++ +. .+....++..+|.+|.++|
T Consensus 294 ~a~~~~~-------------------~~-----~~-------------------~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 294 NLLNQLL-------------------DL-----QP-------------------SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHH-------------------HH-----TT-------------------TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHH-------------------Hh-----cc-------------------CCCCHHHHHHHHHHHHHHhcccccch
Confidence 5443321 11 11 2334456888999999875
Q ss_pred -C-HHHHHHHHHhc-CCcch
Q psy12802 1396 -E-FYNAVECYLKI-KNVDV 1412 (1637)
Q Consensus 1396 -~-~~~A~~~~~~~-~~~~~ 1412 (1637)
+ +++|+++|.++ ...++
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 3 59999999998 55555
No 245
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.30 E-value=6.1e-10 Score=129.74 Aligned_cols=251 Identities=10% Similarity=0.036 Sum_probs=168.3
Q ss_pred CCCeEEEEEcCCCCcc-------------cceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEE
Q psy12802 31 NVAGIWAWRGQNGRKS-------------YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTT 97 (1637)
Q Consensus 31 ~d~~i~vwd~~~~~h~-------------~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~ 97 (1637)
.+++|.++|.++++-. ....++.+. +++..++...++.|.+||..++ +.+... ........
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~----~~~~~i-~~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF----KEVGRI-TGFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----CEEEEE-ECCSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc----EEEEEc-CCCCCCcE
Confidence 3789999999877621 245778774 3444455556799999999885 332222 23467889
Q ss_pred EEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccC-----CcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCCccc
Q psy12802 98 MVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASN-----SFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDASNFD 169 (1637)
Q Consensus 98 v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~-----~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~g~~ 169 (1637)
++++|+++ +++...++.|.+||..+++. ..+.... .....+++ .++..+++.. .+++|.+||..+.
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~----- 162 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD----- 162 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-----
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-----
Confidence 99999988 55554789999999999987 3443222 14567777 4444444443 4889999999873
Q ss_pred ccccccccCCCCcEEEEecC-CeEEEEec-C----------CeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCC
Q psy12802 170 QQQGRVVQHPVPPYALSWPA-GYILAAGS-D----------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ 236 (1637)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-d----------~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 236 (1637)
+...++.. ...+..+.++| +.++.++. + +.|.++| .+++....+... .......++|+|+++
T Consensus 163 ~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~----~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 163 KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK----LGDWPSEVQLNGTRD 237 (328)
T ss_dssp EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC----TTCCCEEEEECTTSC
T ss_pred eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC----CCCCceeEEEecCCC
Confidence 44444432 34567888888 45554443 3 7899999 667777677642 123578999999999
Q ss_pred EEEEEecCcEEEEEeCCCCCccccCCCcccC-CCcceeEEEEcCC-CCEEEEE----ecCCcEEEEEcccccee
Q psy12802 237 AVVVGSYDNIKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRD-GSRIACG----GLCGSVELFESVLKRTI 304 (1637)
Q Consensus 237 ~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~spd-g~~l~~~----~~dg~v~iwd~~~~~~~ 304 (1637)
.+.++.. .|.+||..+.... ...... ....+..++++|+ +...++. ..++.|.+||.. ++.+
T Consensus 238 ~lyv~~~-~v~~~d~~t~~~~----~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 238 TLYWINN-DIWRMPVEADRVP----VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEEESS-SEEEEETTCSSCC----SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred EEEEEcc-EEEEEECCCCcee----eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9988765 6777887654421 011111 1357889999995 5555555 578999999986 5544
No 246
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.30 E-value=4.2e-10 Score=131.18 Aligned_cols=258 Identities=10% Similarity=-0.048 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCCCceeEeecc------CCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEE
Q psy12802 66 SDNIIFIYKLGDDWGDKKVICNKF------IQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVA 137 (1637)
Q Consensus 66 ~d~~i~iw~~~~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~ 137 (1637)
.+++|.+||..++ ++..... ........+.+. +++ +++...++.|.+||..+++. .++ ........
T Consensus 15 ~~~~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i-~~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI-TGFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-ECCSSEEE
T ss_pred CCceEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-CCCCCCcE
Confidence 4789999999875 3332211 123456778774 455 66677789999999999998 555 34577899
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCC-----CCcEEEEecCCeEEEEe--cCCeEEEEe-CCCc
Q psy12802 138 LCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHP-----VPPYALSWPAGYILAAG--SDRIVTIYE-SDGR 209 (1637)
Q Consensus 138 l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~-----~~v~~~~~~~~~l~~~~--~d~~i~iwd-~~~~ 209 (1637)
++++++|+.+++...++.|.+||..+. +....+.... ..+..+++..+.++++. .++.|.+|| .+++
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~-----~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTY-----EITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTT-----EEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCC-----eEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe
Confidence 999999955555447899999998863 3333333222 25667777666666665 488999999 7788
Q ss_pred eeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC----------c-EEEEEeCCCCCccccCCCcccCCCcceeEEEEc
Q psy12802 210 VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----------N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK 278 (1637)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----------~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 278 (1637)
.+.++... .....+.++|+|++++++..+ + |.++|..+.+... .........+..++|+
T Consensus 164 ~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~----~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 164 VVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK----QFKFKLGDWPSEVQLN 233 (328)
T ss_dssp EEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE----EEECCTTCCCEEEEEC
T ss_pred EEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE----EEecCCCCCceeEEEe
Confidence 88777642 235678899999988777654 4 8888876543221 0111112368899999
Q ss_pred CCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecC-ceEEEE
Q psy12802 279 RDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN-DRYLVA 357 (1637)
Q Consensus 279 pdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~lv~ 357 (1637)
||+++|.++.. .|.+||..+++..... + +. ..+.....++++|+ +++.++
T Consensus 234 ~d~~~lyv~~~--~v~~~d~~t~~~~~~~----------------~----------~~-~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 234 GTRDTLYWINN--DIWRMPVEADRVPVRP----------------F----------LE-FRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp TTSCEEEEESS--SEEEEETTCSSCCSSC----------------S----------BC-CCSSCEEEEEECTTTCCEEEE
T ss_pred cCCCEEEEEcc--EEEEEECCCCceeeee----------------e----------ec-CCCCceEEEEEcCCCCeEEEE
Confidence 99999887754 8999998765532100 0 00 01335788999994 666666
Q ss_pred e-----CCCcEEEeeccccce
Q psy12802 358 R-----TPDTLLLGDLHRNLL 373 (1637)
Q Consensus 358 ~-----~~~~i~i~d~~~~~~ 373 (1637)
. .++.|.+||..+..+
T Consensus 285 ~~~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp ECTTSSSEEEEEEECTTCCEE
T ss_pred cccccccCCEEEEECCCCCEE
Confidence 4 478899999884333
No 247
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.27 E-value=3.5e-09 Score=122.20 Aligned_cols=265 Identities=11% Similarity=0.004 Sum_probs=181.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCc
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR--------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDK 82 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~--------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~ 82 (1637)
...+.+++++++|+++++...++.|.+||.. ++ ....+.+++++|+|+..++...++.|..||.. + .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g---~ 93 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G---G 93 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---C
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C---C
Confidence 4578899999999988888778899999977 43 13578999999999877766667889999876 3 1
Q ss_pred eeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCceee--ecccCCcEEEEEEecCCCeEEEEeCCCcEEEE
Q psy12802 83 KVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQT--LYASNSFVVALCLNVRGAGVLSGHADGSIVRY 159 (1637)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iw 159 (1637)
............+.++++.++|. +++...++.|..+|.. ++... +......+.+++++++|+..++...++.|..|
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 11112222346789999999999 5555567899999988 65532 33345678999999999977666667889999
Q ss_pred EecCCCCccccccc-ccccCCCCcEEEEecC-CeEEEEe-cCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCC
Q psy12802 160 YVTEDASNFDQQQG-RVVQHPVPPYALSWPA-GYILAAG-SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ 236 (1637)
Q Consensus 160 d~~~~~~g~~~~~~-~~~~~~~~v~~~~~~~-~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 236 (1637)
+... .... ....+...+..+.+++ +.+..+. ..+.|.+||.+++.... ... .....+.+++++|+|+
T Consensus 173 ~~~g------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~-~~~---~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 173 TNTG------KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEY-DIP---TPNARPHAITAGKNSE 242 (300)
T ss_dssp CTTC------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE-ECS---STTCCEEEEEECSTTC
T ss_pred CCCC------cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEE-ECC---CCCCCceEEEECCCCC
Confidence 8732 2221 1223456788999987 3555554 46789999986665443 221 2345688999999999
Q ss_pred EEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEc
Q psy12802 237 AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 237 ~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
..++...++ |..|+.+.....+ ........+.++.++++|+..++.. . .|..+|.
T Consensus 243 l~v~~~~~~~i~~~~~~g~~~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 243 IWFTEWGANQIGRITNDNTIQEY-----QLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEETTTTEEEEECTTSCEEEE-----ECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEEeccCCCeEEEECCCCcEEEE-----ECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 666665545 8888763211111 0111234678899999998655444 4 6666664
No 248
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.27 E-value=2.7e-10 Score=147.75 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=158.0
Q ss_pred CCCceeEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCc----ccc--eEEEEECCCCCeEEEEECCCe---------
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGN-----VAGIWAWRGQNGRK----SYV--VKGLAFSPDSTKLAVAQSDNI--------- 69 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~-----d~~i~vwd~~~~~h----~~~--V~~~~~spd~~~la~~~~d~~--------- 69 (1637)
+...+..++|||||++||.+.. ..+|++||+.+++. ... ..+++|+ ||+.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 4457889999999999996432 24699999999882 222 3578999 9999999887743
Q ss_pred ----EEEEEcCCCCCCceeEeeccC-CCCCEEEEEEcCCCC-EEE-Ee---CCCcEEEEEcCCC--ceeeecccCCcEEE
Q psy12802 70 ----IFIYKLGDDWGDKKVICNKFI-QQCPVTTMVWLADGP-IIY-GQ---SDGKIKAAHVKAN--KTQTLYASNSFVVA 137 (1637)
Q Consensus 70 ----i~iw~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~-l~~-~~---~d~~v~vwd~~~~--~~~~~~~~~~~v~~ 137 (1637)
|++|++.++......+..... |...+.++.|||||+ ++. .+ .+..|+++|+.++ ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 999999876443444544444 556688999999999 544 33 2358999999877 34677777666665
Q ss_pred EEEecCCCeEEEEeC-C---CcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEec-CC--eEEEEeCCCce
Q psy12802 138 LCLNVRGAGVLSGHA-D---GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGS-DR--IVTIYESDGRV 210 (1637)
Q Consensus 138 l~~s~~g~~l~s~~~-d---g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~ 210 (1637)
. |+++|..|+..+. + +.|..+++.+... .....+..|...+..++...+.|+.... ++ .|.+||.+|..
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---AHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---GGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---cccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 5 7777777665543 3 5788898876422 2234556666666533333456666554 44 68889977777
Q ss_pred eEEeeccCCCCCCccEEEEEECCCCCEEEEEecC----c-EEEEEeC
Q psy12802 211 HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----N-IKLFAWS 252 (1637)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----~-i~i~~~~ 252 (1637)
...+... ....+..+.++|+++.++....+ + +..||+.
T Consensus 362 ~~~l~~p----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 362 VREVALP----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEECCS----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEeecC----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 7766542 33467778888998877665433 2 5555543
No 249
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.26 E-value=4e-10 Score=129.75 Aligned_cols=231 Identities=10% Similarity=0.104 Sum_probs=154.8
Q ss_pred ccceEEEEECCCCC-eEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC
Q psy12802 46 SYVVKGLAFSPDST-KLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 46 ~~~V~~~~~spd~~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
.....+++|+|+|+ .++++..++.|..|+..++ .. ....+...+.+++|+|+|+ +++...++.|.+||..++
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~---~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LS---PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EE---EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eE---EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 34577999999998 6777888999999998763 12 2224567799999999999 665656789999999888
Q ss_pred ceeeeccc-----CCcEEEEEEecCCCeEEEEeCC---------------CcEEEEEecCCCCcccccccccccCCCCcE
Q psy12802 124 KTQTLYAS-----NSFVVALCLNVRGAGVLSGHAD---------------GSIVRYYVTEDASNFDQQQGRVVQHPVPPY 183 (1637)
Q Consensus 124 ~~~~~~~~-----~~~v~~l~~s~~g~~l~s~~~d---------------g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~ 183 (1637)
+...+... ...+..++++|+|+.+++.+.. +.-.+|.+... | . ...+..+...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g--~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G--T-LSAPIRDRVKPN 175 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S--C-EEEEECCCSSEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C--C-EEEeecCCCCCc
Confidence 87433221 2346789999999988873211 11244444432 1 2 233445667789
Q ss_pred EEEecCC--eEEEEecCCeEEEEe-C-CCce---eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCC
Q psy12802 184 ALSWPAG--YILAAGSDRIVTIYE-S-DGRV---HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS 256 (1637)
Q Consensus 184 ~~~~~~~--~l~~~~~d~~i~iwd-~-~~~~---~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~ 256 (1637)
.++|+|+ .+++.+.++.|.+|+ . +|.. ...+. .....+..++++++|++.++. .++|.+|+.+. ..
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~-----~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g-~~ 248 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT-----VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG-DE 248 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC-----CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS-CE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee-----CCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC-CE
Confidence 9999984 556667789999999 3 5655 23331 233456779999999977666 44488988652 21
Q ss_pred ccccCCCcccCCCcceeEEEE-cCCCCEEEEEecCCcEEEEEcccc
Q psy12802 257 VWEEQPNKTIPNLYTISALSW-KRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~l~~-spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
. .....+.. +.+++| +|+++.|++++.+| +.-++..++
T Consensus 249 ~-----~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 249 L-----GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp E-----EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred E-----EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 1 11112223 889999 68999998888764 444455433
No 250
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.26 E-value=5.8e-10 Score=125.51 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=160.1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC-------cc-cceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccC-C
Q psy12802 21 LDIVRLRSEGNVAGIWAWRGQNGR-------KS-YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI-Q 91 (1637)
Q Consensus 21 pdg~~la~~~~d~~i~vwd~~~~~-------h~-~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~ 91 (1637)
..+++|++++.++.|.+||.++|+ +. ..+.++.++|+|+.++ +.++.|..||. ++ +.+-.... .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G----~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG----RELWNIAAPA 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS----CEEEEEECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC----CEEEEEcCCC
Confidence 346789999999999999998877 22 3689999999999888 45788999998 43 23322222 2
Q ss_pred CCCEEEEEEcCCCC-EEEEeC-CCcEEEEEcCCCceeeec------ccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecC
Q psy12802 92 QCPVTTMVWLADGP-IIYGQS-DGKIKAAHVKANKTQTLY------ASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTE 163 (1637)
Q Consensus 92 ~~~v~~v~~s~~~~-l~~~~~-d~~v~vwd~~~~~~~~~~------~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 163 (1637)
...+.++.+.|+|+ +++.+. ++.|..+|..+.....+. .+......+++.++|+++++.+.++.|..||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 35788999999999 777666 778888886433333332 222345566789999999999999999999976
Q ss_pred CCCcccccccccccCCCCcEEEEecC--CeEEEEecCCeEEEEe-CCCceeEEeeccCCC-CCCccEEEEEECCCCCEEE
Q psy12802 164 DASNFDQQQGRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-YKEREFTVACSSPSGQAVV 239 (1637)
Q Consensus 164 ~~~g~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~ 239 (1637)
| +.+.++... ..+.++...+ +.+++++.++.|..+| .+|+.+.++...... ..-..+..+...++|+.++
T Consensus 155 ---G--~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 155 ---G--QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp ---S--CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred ---C--CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 2 555555543 3455666665 3666677777999999 559999988743210 1223478899999999988
Q ss_pred EEecC---------cEEEEEeCC-CCCccccCCCcccC
Q psy12802 240 VGSYD---------NIKLFAWSP-SKSVWEEQPNKTIP 267 (1637)
Q Consensus 240 ~~~~d---------~i~i~~~~~-~~~~~~~~~~~~~~ 267 (1637)
+.+.. ..+++.++. ++..|.......+.
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~ 266 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFG 266 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSC
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCccccc
Confidence 87522 235666633 33345544444443
No 251
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.25 E-value=3.8e-10 Score=132.85 Aligned_cols=206 Identities=7% Similarity=0.004 Sum_probs=163.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccC-H
Q psy12802 1072 VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKN-Y 1150 (1637)
Q Consensus 1072 ~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 1150 (1637)
.|....++..+|.++...|++++|+..|.++ + ...| ....+|+.+|.++...|+ +
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~a-------------------l----~l~P-~~~~a~~~~g~~l~~~g~d~ 148 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDA-------------------I----ELNA-ANYTVWHFRRVLLKSLQKDL 148 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH-------------------H----HHCT-TCHHHHHHHHHHHHHTTCCH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHH-------------------H----HhCc-cCHHHHHHHHHHHHHcccCH
Confidence 3667889999999999999999999886653 1 1233 336889999999999997 9
Q ss_pred HHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCC
Q psy12802 1151 KQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQ 1230 (1637)
Q Consensus 1151 ~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~ 1230 (1637)
++|+.+|.++ +...+.+..++..+|.++...|++++|+..|.++
T Consensus 149 ~eAl~~~~~a---------------------l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka--------------- 192 (382)
T 2h6f_A 149 HEEMNYITAI---------------------IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI--------------- 192 (382)
T ss_dssp HHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH---------------
T ss_pred HHHHHHHHHH---------------------HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------
Confidence 9999999999 7777788889999999999999999999999765
Q ss_pred hHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHH
Q psy12802 1231 FDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLN 1310 (1637)
Q Consensus 1231 ~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 1310 (1637)
....+....+|..+|.++...|++++|+..|.++ .+++|. .+.+|..
T Consensus 193 ---------l~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a-----------------------l~l~P~-~~~a~~~ 239 (382)
T 2h6f_A 193 ---------LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL-----------------------LKEDVR-NNSVWNQ 239 (382)
T ss_dssp ---------HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH-----------------------HHHCTT-CHHHHHH
T ss_pred ---------HHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH-----------------------HHhCCC-CHHHHHH
Confidence 1236778899999999999999999999999988 444666 5788999
Q ss_pred hHHHHHh-cCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHH
Q psy12802 1311 QSKCEFE-NENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQAR 1389 (1637)
Q Consensus 1311 ~a~~~~~-~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 1389 (1637)
+|..+.. .|.+++|+ .+.++.+| ..|+++. |.+..++..++.
T Consensus 240 lg~~l~~l~~~~~eA~--------~~~el~~~------~~Al~l~-----------------------P~~~~a~~~l~~ 282 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAV--------LEREVQYT------LEMIKLV-----------------------PHNESAWNYLKG 282 (382)
T ss_dssp HHHHHHHTTCSCSHHH--------HHHHHHHH------HHHHHHS-----------------------TTCHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHH--------HHHHHHHH------HHHHHHC-----------------------CCCHHHHHHHHH
Confidence 9999988 56557775 12234445 4454432 234446889999
Q ss_pred HHHHcC--CHHHHHHHHHhc
Q psy12802 1390 QWEQNG--EFYNAVECYLKI 1407 (1637)
Q Consensus 1390 ~~~~~g--~~~~A~~~~~~~ 1407 (1637)
++...| ++.+|++.+.++
T Consensus 283 ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 283 ILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHTTTCGGGCHHHHHHHHHH
T ss_pred HHHccCccchHHHHHHHHHh
Confidence 999988 799999988866
No 252
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=5.2e-11 Score=145.46 Aligned_cols=137 Identities=8% Similarity=-0.082 Sum_probs=81.8
Q ss_pred ChHHHHHHHHhcCCCCcHHHHHHHHHH-H--HhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHH
Q psy12802 1230 QFDFAFELAKIGMKSKLEEVHYKYALV-L--EDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGD 1306 (1637)
Q Consensus 1230 ~~~~a~~l~~~~~~~~~~~~~~~~a~~-~--~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~ 1306 (1637)
++++|+..+++.. +..+..++.+|.. | ...+++++|+..|.++ ++ ...+.
T Consensus 232 d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A------a~--------------------~g~~~ 284 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG------RA--------------------ADQPR 284 (452)
T ss_dssp CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH------HH--------------------TTCHH
T ss_pred CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH------HH--------------------CCCHH
Confidence 4455555555545 6677788888887 4 4567777777777776 11 11456
Q ss_pred HHHHhHHHHHhcC-----ChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccch
Q psy12802 1307 ILLNQSKCEFENE-----NFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDI 1381 (1637)
Q Consensus 1307 ~~~~~a~~~~~~~-----~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~ 1381 (1637)
.+..+|..+. .| ++++|+.+|.++- + .+.
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~--------------------------------------------g~~ 318 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G--------------------------------------------REV 318 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T--------------------------------------------TCH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C--------------------------------------------CCH
Confidence 6677777666 44 5555555554431 1 122
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHhccCccchhhhhhhhhhhhhh----ccCHH
Q psy12802 1382 HSLITQARQWEQ----NGEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLKYLNHDQSYKILPSLVPKLME----FKQYD 1453 (1637)
Q Consensus 1382 ~~~~~~a~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 1453 (1637)
.++..+|..|.. ..++.+|+.+|.++.+... +++...+|..+.. ..++.
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-----------------------~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-----------------------NSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-----------------------TTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-----------------------HHHHHHHHHHHHhCCCCCCCHH
Confidence 346777877776 3488888888887652211 2445556666654 24666
Q ss_pred HHHHHHhcc
Q psy12802 1454 LAVRVYLNI 1462 (1637)
Q Consensus 1454 ~A~~~y~~~ 1462 (1637)
+|...|.++
T Consensus 376 ~A~~~~~~A 384 (452)
T 3e4b_A 376 NAYVFSQLA 384 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666554
No 253
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.1e-10 Score=133.36 Aligned_cols=248 Identities=18% Similarity=0.165 Sum_probs=160.2
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhc---cccchHHHHHHHHHHHHHhC
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVIT---NKQDIAQHVKTLAQHFKTVK 1031 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~---~~~~~~~~~~~la~~~~~~g 1031 (1637)
+.....+..+|..+...|++++|+.+|.++ +++++... .+. ...++..+|..|...|
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 83 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQA-------------------LEDLEKTSGHDHPD-VATMLNILALVYRDQN 83 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHHHCSSSHH-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHHHHHHcCCCCHH-HHHHHHHHHHHHHHCC
Confidence 455667788999999999999999998664 33333332 333 6778999999999999
Q ss_pred CHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhh--cChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHH
Q psy12802 1032 DYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQH--LNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAI 1109 (1637)
Q Consensus 1032 ~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai 1109 (1637)
++++|+.+|.++. ++.++. .+.+....++..+|..|...|++++|+.+|.++ +
T Consensus 84 ~~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------~ 138 (311)
T 3nf1_A 84 KYKDAANLLNDAL-------------------AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA------L 138 (311)
T ss_dssp CHHHHHHHHHHHH-------------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHH-------------------HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH------H
Confidence 9999999987653 333332 234566888999999999999999999987663 2
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhc--C-CHHHHHHHHHhc
Q psy12802 1110 SMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL--N-LWEDAYRIALSN 1186 (1637)
Q Consensus 1110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~--g-~~~~A~~~~~~~ 1186 (1637)
.++.+. .. ...+....++..+|..+...|++++|+.+|.++-.. +.+. + ...
T Consensus 139 ~~~~~~---------~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~--------- 193 (311)
T 3nf1_A 139 EIREKV---------LG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI------YQTKLGPDDPN--------- 193 (311)
T ss_dssp HHHHHH---------HC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------HHHTSCTTCHH---------
T ss_pred HHHHHh---------cC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHhCCCCHH---------
Confidence 222111 00 112334568899999999999999999999988221 1100 0 000
Q ss_pred CCccchHHHHHHHHHhcCcchHHHHHHHhccHH-----------------------HHHHHHHhcCChHHHHHHHHhcC-
Q psy12802 1187 GGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLE-----------------------SCISNACDTYQFDFAFELAKIGM- 1242 (1637)
Q Consensus 1187 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~i~~~~~~~~~~~a~~l~~~~~- 1242 (1637)
...++..++..+...|++++|++.|.++.... .....+...+.+.++....+...
T Consensus 194 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 194 -VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 01134555666666666666666665543221 11122333344444444433332
Q ss_pred -CCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1243 -KSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1243 -~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.+..+.++..+|..|...|++++|+..|.++
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456788899999999999999999999987
No 254
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=1.1e-09 Score=125.20 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=122.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhC-CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHcc
Q psy12802 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKIN-PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAK 998 (1637)
Q Consensus 920 ~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~-~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~ 998 (1637)
+.+|...|++++|+.+|. +|+++..... ++.....+..+|.+|...|++++|+.+|.++ ++++.+.|
T Consensus 44 ~~~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A------l~l~~~~g 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFL------KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA------IQIFTHRG 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHH------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHH------HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHcC
Confidence 445555666666666665 5666655542 2334567788999999999999999998654 34444433
Q ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHH
Q psy12802 999 QWKKAVQILQVITNKQDIAQHVKTLAQHFKTV-KDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKA 1077 (1637)
Q Consensus 999 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~ 1077 (1637)
++.....++..+|.+|... |++++|+.+|.++... .....+......
T Consensus 112 -------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-------------------~~~~~~~~~~~~ 159 (292)
T 1qqe_A 112 -------------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-------------------YAQDQSVALSNK 159 (292)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------------------HHHTTCHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-------------------HHhCCChHHHHH
Confidence 3222355788999999996 9999999999876433 222222233467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHH
Q psy12802 1078 TFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEK 1155 (1637)
Q Consensus 1078 ~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 1155 (1637)
++..+|.+|..+|+|++|+.+|.++... ...... -....++..+|.++...|++++|+.
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKS-------------------SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------------TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7899999999999999999987763211 000000 0123477889999999999999999
Q ss_pred HHHHcc
Q psy12802 1156 YYLDCN 1161 (1637)
Q Consensus 1156 ~y~~a~ 1161 (1637)
+|.++-
T Consensus 221 ~~~~al 226 (292)
T 1qqe_A 221 TLQEGQ 226 (292)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 999983
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.23 E-value=1.2e-06 Score=116.00 Aligned_cols=408 Identities=9% Similarity=0.077 Sum_probs=237.8
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------cc---ceEEEEECCCCCeEEEEECCCeEEEEEcCCCC
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK-------SY---VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW 79 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h-------~~---~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~ 79 (1637)
.++.|+++..+++|.+.+... +.+..||..+.+. .. .|.++...++|...+ ++. +.|..|+..++
T Consensus 86 ~~n~I~~i~~d~~g~lWigT~--~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi-~t~-~gl~~~~~~~~- 160 (795)
T 4a2l_A 86 ANDISRIVKTDSQGRVWIGTR--DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLI-STP-EGLIMFDIKES- 160 (795)
T ss_dssp SCSCEEEEEECTTSCEEEEES--SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEE-EET-TEEEEEETTTT-
T ss_pred cccceeEEEECCCCCEEEEeC--CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEE-EEC-CceEEEECCCC-
Confidence 457899999999998776543 4588999876541 11 188898888887555 454 55888987653
Q ss_pred CCceeEeeccCC-CCC-EEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeee--cccCCcEEEEEEecCCCeEEEEeCCCc
Q psy12802 80 GDKKVICNKFIQ-QCP-VTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTL--YASNSFVVALCLNVRGAGVLSGHADGS 155 (1637)
Q Consensus 80 ~~~~~~~~~~~~-~~~-v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~l~~s~~g~~l~s~~~dg~ 155 (1637)
+.......+ ... |.++...++|.+..++.++.|..|+..+++...+ ......|.++...++|...+ |+.++-
T Consensus 161 ---~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~G 236 (795)
T 4a2l_A 161 ---KFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAG 236 (795)
T ss_dssp ---EEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSC
T ss_pred ---EEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCC
Confidence 222111111 123 8889888888866677665699999988876433 22356789999888887554 554445
Q ss_pred EEEEEecCCCCcccccccccc--------cCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCceeEEeeccC---CCCCC
Q psy12802 156 IVRYYVTEDASNFDQQQGRVV--------QHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTA---PHYKE 223 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~--------~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~ 223 (1637)
|.+||..+.. ...+. -....|.++...+ +.+..|+.+ .|.+||........+.... ..-..
T Consensus 237 l~~~~~~~~~------~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (795)
T 4a2l_A 237 LFLINPKTKE------IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQ 309 (795)
T ss_dssp EEEEETTTTE------EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSS
T ss_pred eEEEeCCCCe------EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCC
Confidence 8888876521 11111 1235688888875 577778776 6888995555555543211 00234
Q ss_pred ccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCc-cccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccc
Q psy12802 224 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV-WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 302 (1637)
Q Consensus 224 ~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~ 302 (1637)
..|.++...++|..-+....+||..|+.....-. +........-....|.++...++|. |-+|+.++.|..|+..+++
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence 5799999999998655444455888875543211 1000000111234689999988887 5558888889999986543
Q ss_pred eeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCce-EEEEeCCCcEEEeeccccceeeeecCCC
Q psy12802 303 TIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEVLWPDS 381 (1637)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~lv~~~~~~i~i~d~~~~~~~~~~~~~~ 381 (1637)
...- ..+.. . .. .......|.++...++++ +.+++.++.+..+|..+++...+.....
T Consensus 389 ~~~~-------~~~~~--------~---~~---~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 389 FTSY-------TLQED--------E---SA---RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp EEEE-------CCC--------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred EEEE-------ecCCC--------C---cc---cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 2110 00000 0 00 000123688888888888 7888777889999998877665432111
Q ss_pred CCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCc---cCCCcceeeeeeeccCCCeEE
Q psy12802 382 GRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNK---TIPNLYTISALSWKRDGSRIA 458 (1637)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~---~~~~~~~I~~l~~s~dg~~la 458 (1637)
. ...+.+.++..++.+...+... +++. .+++....|...... .......|.++...++|...+
T Consensus 448 ~-----l~~~~v~~i~~d~~g~lwigt~-~Gl~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 448 Q-----LVNENVYAILPDGEGNLWLGTL-SALV--------RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp C-----CSCSCEEEEEECSSSCEEEEES-SCEE--------EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred C-----cCCCeeEEEEECCCCCEEEEec-Ccee--------EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 0 1123455666665333222222 3222 233332222211110 011235688999998887655
Q ss_pred eeccCCcEEEehh
Q psy12802 459 CGGLCGSVELFES 471 (1637)
Q Consensus 459 ~g~~dg~v~lw~~ 471 (1637)
... .| +..|+.
T Consensus 514 gt~-~G-l~~~~~ 524 (795)
T 4a2l_A 514 GGE-EG-LSVFKQ 524 (795)
T ss_dssp EES-SC-EEEEEE
T ss_pred EeC-Cc-eEEEeC
Confidence 443 44 545543
No 256
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.23 E-value=6.2e-10 Score=125.27 Aligned_cols=214 Identities=10% Similarity=0.085 Sum_probs=153.9
Q ss_pred CCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCC-CCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-eeeccc-CC
Q psy12802 57 DSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQ-CPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QTLYAS-NS 133 (1637)
Q Consensus 57 d~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~-~~ 133 (1637)
.++.|++++.++.|.+||..++ +.+-....+. ..+.++.++|+|+++. +.++.|..||. +++. ..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 3578889999999999998775 4444433443 4688999999999333 45788999999 6766 555543 35
Q ss_pred cEEEEEEecCCCeEEEEeC-CCcEEEEEecCCCCcccccccccc------cCCCCcEEEEecC--CeEEEEecCCeEEEE
Q psy12802 134 FVVALCLNVRGAGVLSGHA-DGSIVRYYVTEDASNFDQQQGRVV------QHPVPPYALSWPA--GYILAAGSDRIVTIY 204 (1637)
Q Consensus 134 ~v~~l~~s~~g~~l~s~~~-dg~i~iwd~~~~~~g~~~~~~~~~------~~~~~v~~~~~~~--~~l~~~~~d~~i~iw 204 (1637)
.+.++.+.|+|+.+++.+. ++.|..+|.. | +.+..+. .+...+..+.+.+ +.+++.+.++.|..|
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~----G--k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMK----G--EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTT----S--CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCC----C--CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 7889999999999999887 7777666643 2 4333332 1112344455555 478888889999999
Q ss_pred eCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcc-cCCCcceeEEEEcCCCC
Q psy12802 205 ESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGS 282 (1637)
Q Consensus 205 d~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdg~ 282 (1637)
|.+|+.+.++... ..+.++...|+|+.+++++.++ |..+|..+++..|....... -.....+..+...++|+
T Consensus 152 d~~G~~~w~~~~~------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 152 APNGQLLNSVKLS------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp CTTSCEEEEEECS------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred CCCCCEEEEEECC------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 9779999988753 2345677889999999988887 88899888888886542211 11234578899999999
Q ss_pred EEEEEe
Q psy12802 283 RIACGG 288 (1637)
Q Consensus 283 ~l~~~~ 288 (1637)
.+++..
T Consensus 226 i~v~~~ 231 (276)
T 3no2_A 226 LYICNW 231 (276)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888764
No 257
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=1.1e-09 Score=125.40 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=134.5
Q ss_pred HHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Q psy12802 965 GDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCD 1044 (1637)
Q Consensus 965 ~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 1044 (1637)
|..+...|++++|+.+|.+ |+++.....++.....++..+|.+|...|++++|+.+|.++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~-------------------al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLK-------------------AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHH-------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH-------------------HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455556666666665543 333334443443356789999999999999999999987653
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHH
Q psy12802 1045 MHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEE-NKFKEAERLYLIIGEPDLAISMFKNQRQYENMIK 1123 (1637)
Q Consensus 1045 ~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~ 1123 (1637)
+++.+.| +......++..+|.+|..+ |++++|+.+|.++ +.++...+..
T Consensus 105 ------~l~~~~g-------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A------l~~~~~~~~~----- 154 (292)
T 1qqe_A 105 ------QIFTHRG-------------QFRRGANFKFELGEILENDLHDYAKAIDCYELA------GEWYAQDQSV----- 154 (292)
T ss_dssp ------HHHHHTT-------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH------HHHHHHTTCH-----
T ss_pred ------HHHHHcC-------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH------HHHHHhCCCh-----
Confidence 2333333 3334467788999999996 9999999997653 3333322211
Q ss_pred HHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCcc-------chHHHH
Q psy12802 1124 LVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQE-------AVEPVV 1196 (1637)
Q Consensus 1124 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~l~ 1196 (1637)
.....++..+|..+...|+|++|+.+|.++ +........ .+..+|
T Consensus 155 -------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------l~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 155 -------ALSNKCFIKCADLKALDGQYIEASDIYSKL---------------------IKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHTTSSCTTTGGGHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------HHHHhcCCcccHHHHHHHHHHH
Confidence 122457889999999999999999999987 211111111 345667
Q ss_pred HHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCChHHHHHHHHHcC
Q psy12802 1197 YLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLE--DNGQFNEAETQFIKAN 1274 (1637)
Q Consensus 1197 ~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~--~~g~~~~A~~~~~~a~ 1274 (1637)
.++...|++++|+..|.++..+++-.. ..........++..+. +.+++++|+..|.++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~-------------------~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFA-------------------DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC----------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCC-------------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 777777787777777777544333210 0001123334555554 4567888888887773
Q ss_pred C
Q psy12802 1275 K 1275 (1637)
Q Consensus 1275 ~ 1275 (1637)
+
T Consensus 268 ~ 268 (292)
T 1qqe_A 268 R 268 (292)
T ss_dssp C
T ss_pred c
Confidence 3
No 258
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.22 E-value=1e-09 Score=126.41 Aligned_cols=269 Identities=7% Similarity=0.028 Sum_probs=169.3
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEEcCCCCc------ccceEEEEECCCCCeEEEEE----------CCCeEEEEEc
Q psy12802 17 DVFNLDIVRLRSEGN-----VAGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQ----------SDNIIFIYKL 75 (1637)
Q Consensus 17 ~~~spdg~~la~~~~-----d~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~----------~d~~i~iw~~ 75 (1637)
....||++++.+... ++.|.+.|..+++. .... .+++||||+++.+++ .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 456899998888765 57899999988762 1122 499999999998775 3678999999
Q ss_pred CCCCCCceeEeecc-CC------CCCEEEEEEcCCCC-EEEEeC--CCcEEEEEcCCCce-eeecccCCcEEEEEEecCC
Q psy12802 76 GDDWGDKKVICNKF-IQ------QCPVTTMVWLADGP-IIYGQS--DGKIKAAHVKANKT-QTLYASNSFVVALCLNVRG 144 (1637)
Q Consensus 76 ~~~~~~~~~~~~~~-~~------~~~v~~v~~s~~~~-l~~~~~--d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g 144 (1637)
.+. +.+.... +. ......+.|+|||+ ++++.. ++.|.++|+.+++. .++.. .+ . ...+....
T Consensus 117 ~t~----~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~g-~-~~~~P~g~ 189 (386)
T 3sjl_D 117 VTL----LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-PD-C-YHIFPTAP 189 (386)
T ss_dssp TTC----CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CS-E-EEEEEEET
T ss_pred CCC----eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-CC-c-ceeecCCC
Confidence 885 2222211 11 22455789999999 666553 68999999999998 44432 11 1 22233344
Q ss_pred CeEEEEeCCCcEEEEEecCCCCccccccc----ccccCCCCcE-EEEec-C-CeEEEEecCCeEEEEeCCCc---eeEEe
Q psy12802 145 AGVLSGHADGSIVRYYVTEDASNFDQQQG----RVVQHPVPPY-ALSWP-A-GYILAAGSDRIVTIYESDGR---VHRIF 214 (1637)
Q Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~g~~~~~~----~~~~~~~~v~-~~~~~-~-~~l~~~~~d~~i~iwd~~~~---~~~~~ 214 (1637)
+.+++.+.||++.+.++...+ +... .+.....++. ...|. + +.++..+.+|+|.+.|..+. .+..+
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEG----TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSS----CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred ceeEEECCCCCEEEEECCCCC----eEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 566677778887777776522 1111 1111112222 24663 3 46666777899999995443 22223
Q ss_pred ec-c-----CCCCCCccEEEEEECCCCCEEEEEec--------C--c-EEEEEeCCCCCccccCCCcccCCCcceeEEEE
Q psy12802 215 DY-T-----APHYKEREFTVACSSPSGQAVVVGSY--------D--N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW 277 (1637)
Q Consensus 215 ~~-~-----~~~~~~~~i~~~~~sp~g~~l~~~~~--------d--~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 277 (1637)
.. . .+ ........++++|+++.+.+... + + |.++|..+.+.. ..+.-...+.++.+
T Consensus 266 ~~~~~~~~~~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~------~~i~vg~~~~~lav 338 (386)
T 3sjl_D 266 EALTEAERADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL------AKFEMGHEIDSINV 338 (386)
T ss_dssp ESSCHHHHHTT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE------EEEEEEEEECEEEE
T ss_pred ecccccccccc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE------EEEECCCCcceEEE
Confidence 20 0 00 11123345777999998888753 1 2 667776665432 22222247889999
Q ss_pred cCCCC-EEEEE-ecCCcEEEEEcccccee
Q psy12802 278 KRDGS-RIACG-GLCGSVELFESVLKRTI 304 (1637)
Q Consensus 278 spdg~-~l~~~-~~dg~v~iwd~~~~~~~ 304 (1637)
+||++ +|+++ ..++.|.++|..+++.+
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99997 66665 45899999999877654
No 259
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.21 E-value=9.2e-11 Score=143.26 Aligned_cols=259 Identities=10% Similarity=0.023 Sum_probs=138.9
Q ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHH---HHHHHhcc------CHHHHHHHHHHcCCHHHHHHHHHhh
Q psy12802 999 QWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTA---EKIYSHCD------MHEQIVDMYHQTGQWEKAYAIAEQH 1069 (1637)
Q Consensus 999 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~------~~~~~~~~y~~~g~~~~A~~~~~~~ 1069 (1637)
++++|+.++++...++ .+.++..||..|...+..+++ .+.+.++. ....+..+|...+.++++...++..
T Consensus 89 ~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG-EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHTT-CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 3444444444433333 334566667666665543333 22232221 1122445555555444443332221
Q ss_pred cC--hhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHh---CCchHH----H-HHHHhc----CCHHHHHHHHHhhCCCc
Q psy12802 1070 LN--VGEIKATFIQKCKQLEEEN---KFKEAERLYLII---GEPDLA----I-SMFKNQ----RQYENMIKLVRNYHPDL 1132 (1637)
Q Consensus 1070 ~~--~~~~~~~~~~~a~~~~~~g---~~~~A~~~y~~~---~~~~~a----i-~~~~~~----~~~~~a~~~~~~~~~~~ 1132 (1637)
.. ....+..++.+|..|...| ++++|++.|.++ +...-. + .+|... +++++|++.+++.. +.
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g 246 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG 246 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC
Confidence 10 0122347778888888888 777888777763 111111 1 123222 45666666666555 44
Q ss_pred hHHHHHHHHHH-H--HHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHH
Q psy12802 1133 LDTTLLHLAQE-C--EESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAV 1209 (1637)
Q Consensus 1133 ~~~~~~~la~~-~--~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 1209 (1637)
.+.++..+|.. + ...|++++|+.+|.++ + +.+++.+...+|..|. .|..
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A---------------------a--~~g~~~A~~~Lg~~y~-~G~g---- 298 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNG---------------------R--AADQPRAELLLGKLYY-EGKW---- 298 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHH---------------------H--HTTCHHHHHHHHHHHH-HCSS----
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---------------------H--HCCCHHHHHHHHHHHH-cCCC----
Confidence 45566666665 3 3455666666666555 1 1234455666666665 3300
Q ss_pred HHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh----CCChHHHHHHHHHcCChHHHHHHHHh
Q psy12802 1210 RLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLED----NGQFNEAETQFIKANKPKEAISMYIH 1285 (1637)
Q Consensus 1210 ~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~ai~~~~~ 1285 (1637)
-..++++|+..+++.. +..+..++.+|..|.. ..++++|+..|.+|-
T Consensus 299 -----------------~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa----------- 349 (452)
T 3e4b_A 299 -----------------VPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA----------- 349 (452)
T ss_dssp -----------------SCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH-----------
T ss_pred -----------------CCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-----------
Confidence 0013444444445555 7788899999988887 348888888888871
Q ss_pred cCCHHHHHHHHhhhCCCChHHHHHHhHHHHHh----cCChhhHHHHHHHh
Q psy12802 1286 NQDWENAERIANEHDPTSIGDILLNQSKCEFE----NENFSKFETLLLRA 1331 (1637)
Q Consensus 1286 ~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a 1331 (1637)
+ ...+.....+|..+.. ..++.+|..+|.++
T Consensus 350 ------------~---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 350 ------------R---NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp ------------T---TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred ------------h---hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 1 1124556777777664 45777777777664
No 260
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.21 E-value=7.7e-09 Score=121.77 Aligned_cols=268 Identities=8% Similarity=0.014 Sum_probs=167.4
Q ss_pred EEEcCCCCEEEEEeC--CC---eEEEEEcCCCCc-----ccceEEEEECCCCCeEEEEE----------CCCeEEEEEcC
Q psy12802 17 DVFNLDIVRLRSEGN--VA---GIWAWRGQNGRK-----SYVVKGLAFSPDSTKLAVAQ----------SDNIIFIYKLG 76 (1637)
Q Consensus 17 ~~~spdg~~la~~~~--d~---~i~vwd~~~~~h-----~~~V~~~~~spd~~~la~~~----------~d~~i~iw~~~ 76 (1637)
...+||++++.+... .. +|.++|..+++. .+....++|||||+++.++. .++.|.+||..
T Consensus 26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred ccCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 456689988777653 33 889999987762 22223999999999999886 36789999997
Q ss_pred CCCCCceeEeec-cC------CCCCEEEEEEcCCCC-EEEEeC--CCcEEEEEcCCCce-eeecccCCcEEEEEEecCCC
Q psy12802 77 DDWGDKKVICNK-FI------QQCPVTTMVWLADGP-IIYGQS--DGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGA 145 (1637)
Q Consensus 77 ~~~~~~~~~~~~-~~------~~~~v~~v~~s~~~~-l~~~~~--d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~ 145 (1637)
+. +.+... .+ +......+.|+|||+ +++++. ++.|.++| .+++. ..+..... ++.+.|+++
T Consensus 106 t~----~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~ 177 (373)
T 2mad_H 106 TF----LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAP 177 (373)
T ss_pred CC----cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCC
Confidence 64 222111 11 112345899999999 776653 57899999 99987 34132222 245566654
Q ss_pred -eEEEEeCCCcEEEEEecCCCCcccccccccc-----cCCCCc-EEEEecC--CeEEEEecCCeEEEEeCCCc---eeEE
Q psy12802 146 -GVLSGHADGSIVRYYVTEDASNFDQQQGRVV-----QHPVPP-YALSWPA--GYILAAGSDRIVTIYESDGR---VHRI 213 (1637)
Q Consensus 146 -~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~-----~~~~~v-~~~~~~~--~~l~~~~~d~~i~iwd~~~~---~~~~ 213 (1637)
.+++.+.||.+.++|. +. +...... ....++ ....+.+ +.++..+..+.+.+.|..+. .+..
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AG-----GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP 251 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CC-----cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeee
Confidence 4667778999999998 43 2221111 111121 1233333 34444456788999994332 2233
Q ss_pred eeccCC-----CCCCccEEEEEECCCCCEEEEEec----------Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEE
Q psy12802 214 FDYTAP-----HYKEREFTVACSSPSGQAVVVGSY----------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW 277 (1637)
Q Consensus 214 ~~~~~~-----~~~~~~i~~~~~sp~g~~l~~~~~----------d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 277 (1637)
+..... .........+.++|+|+.+.+... .+ |.++|..+.+.. ..+.......++.|
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv------~~i~~g~~p~~i~~ 325 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS------SQISLGHDVDAISV 325 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE------EEEECCCCcCeEEE
Confidence 321110 001223445789999998887653 22 777777655432 22333346889999
Q ss_pred cCCCC-EEEEEe-cCCcEEEEEcccccee
Q psy12802 278 KRDGS-RIACGG-LCGSVELFESVLKRTI 304 (1637)
Q Consensus 278 spdg~-~l~~~~-~dg~v~iwd~~~~~~~ 304 (1637)
+|||+ .++++. .++.|.+||..+++.+
T Consensus 326 s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 326 AQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 99999 777776 5899999999876654
No 261
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.21 E-value=1.7e-09 Score=125.94 Aligned_cols=232 Identities=10% Similarity=0.082 Sum_probs=156.4
Q ss_pred CceeEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCC-----------cccceEEEEECCC-CCeEEEEECCCeEEE
Q psy12802 12 NVLQDDVFNLDIVRLRS-------EGNVAGIWAWRGQNGR-----------KSYVVKGLAFSPD-STKLAVAQSDNIIFI 72 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~-------~~~d~~i~vwd~~~~~-----------h~~~V~~~~~spd-~~~la~~~~d~~i~i 72 (1637)
....+++|+|+|.++++ +..++.|++||..+++ +...+.+++++|+ |+.++ ++..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEE
Confidence 34578999999998888 5678899999977665 2256889999999 65444 444557889
Q ss_pred EEcCCCCCCceeE-eec-c-CCCCCEEEEEEcCCCC-EEEEeCC---------------CcEEEEEcCCCceeeecccCC
Q psy12802 73 YKLGDDWGDKKVI-CNK-F-IQQCPVTTMVWLADGP-IIYGQSD---------------GKIKAAHVKANKTQTLYASNS 133 (1637)
Q Consensus 73 w~~~~~~~~~~~~-~~~-~-~~~~~v~~v~~s~~~~-l~~~~~d---------------~~v~vwd~~~~~~~~~~~~~~ 133 (1637)
||.. +. ...+ ... . .+...+.+++++|+|+ +++...+ +.|..|+.. ++...+..+..
T Consensus 97 ~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 97 VQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EETT-SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EeCC-CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 9976 31 1111 111 1 1234588999999999 5555444 567777766 55544444555
Q ss_pred cEEEEEEe----cCCCeEEEE-eCCCcEEEEEecCCCCc-ccccccccccCC-CCcEEEEecC-CeE-EEEecCCeEEEE
Q psy12802 134 FVVALCLN----VRGAGVLSG-HADGSIVRYYVTEDASN-FDQQQGRVVQHP-VPPYALSWPA-GYI-LAAGSDRIVTIY 204 (1637)
Q Consensus 134 ~v~~l~~s----~~g~~l~s~-~~dg~i~iwd~~~~~~g-~~~~~~~~~~~~-~~v~~~~~~~-~~l-~~~~~d~~i~iw 204 (1637)
....++|+ |+|+.+.++ +.++.|.+|+....+.. -......+..+. ..+..+++++ +.+ ++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 67899999 999766555 56789999998621100 000122233333 5678899987 344 444568899999
Q ss_pred eCC-CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC--cEEEEEeCC
Q psy12802 205 ESD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSP 253 (1637)
Q Consensus 205 d~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--~i~i~~~~~ 253 (1637)
|.. ++.+..+.. +...+.+++|+|+|+.|.+++.+ +|..|+...
T Consensus 253 d~~~g~~~~~~~~-----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 253 GPDGGQPKMRIRC-----PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEEC-----SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCCcEeEEEeC-----CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 955 877777663 33578999999999977666655 388888764
No 262
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=1.5e-08 Score=116.73 Aligned_cols=274 Identities=11% Similarity=-0.008 Sum_probs=182.2
Q ss_pred cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
....+.+++++|+|+..++...++.|.+|+.. + ....+ ....+...+.++++.++|. +++...++.|..+|.. +
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~--~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G--RIKEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C--ceEEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34678899999999877776678999999976 3 11111 2223346789999999999 5555557889999988 6
Q ss_pred ceee--ecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccc-cccccCCCCcEEEEecC-CeEEEEe-cC
Q psy12802 124 KTQT--LYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ-GRVVQHPVPPYALSWPA-GYILAAG-SD 198 (1637)
Q Consensus 124 ~~~~--~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~-~~~~~~~~~v~~~~~~~-~~l~~~~-~d 198 (1637)
+... +......+.+++++++|..+++...++.|..||... ... ..+......+.++.+++ +.+..+. .+
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG------TIYEYDLPNKGSYPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS------CEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC------CEEEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence 5532 233456799999999999888777788899998762 222 12233456788999987 3454444 47
Q ss_pred CeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEE
Q psy12802 199 RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW 277 (1637)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 277 (1637)
+.|..||.+++... +... .....+..++++++|+..++....+ |.+|+.. +... . .........+.++++
T Consensus 167 ~~i~~~~~~g~~~~-~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~--~--~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 167 NSIGRITNTGKLEE-YPLP---TNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEIS--E--YDIPTPNARPHAITA 237 (300)
T ss_dssp TEEEEECTTCCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEE--E--EECSSTTCCEEEEEE
T ss_pred CeEEEECCCCcEEE-eeCC---CCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEE--E--EECCCCCCCceEEEE
Confidence 88999998666553 3322 2334688999999998777666555 8887762 2211 0 011123456889999
Q ss_pred cCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEE
Q psy12802 278 KRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA 357 (1637)
Q Consensus 278 spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~ 357 (1637)
+++|+..++...++.|..|+.. ++.. .+ .+.. ....+.++.++++|++.++
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~~-g~~~-------~~---------~~~~------------~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITND-NTIQ-------EY---------QLQT------------ENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT-SCEE-------EE---------ECCS------------TTCCCCCEEECTTSCEEEE
T ss_pred CCCCCEEEeccCCCeEEEECCC-CcEE-------EE---------ECCc------------cCCccceeEeCCCCCEEEE
Confidence 9999976666667899999872 3211 00 0000 1124678888888888777
Q ss_pred eCCCcEEEeec
Q psy12802 358 RTPDTLLLGDL 368 (1637)
Q Consensus 358 ~~~~~i~i~d~ 368 (1637)
... .|..+|.
T Consensus 289 ~~~-~i~~~~p 298 (300)
T 2qc5_A 289 LKC-KIGKLNL 298 (300)
T ss_dssp CSS-EEEEEEE
T ss_pred ccC-ceEEeCC
Confidence 654 6666554
No 263
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=3.9e-09 Score=126.28 Aligned_cols=239 Identities=12% Similarity=0.022 Sum_probs=158.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
....+|..+...|++++|..+|.++ +.+.+...++......+..+|..+...|++++|+.+
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 115 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQT-------------------EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 115 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH-------------------HHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567888888999999999887664 223333223222344578899999999999999998
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNV--GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
|.++ +++.+..... +.....+..+|.++...|++++|+.+|.++
T Consensus 116 ~~~a-------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 161 (373)
T 1hz4_A 116 QEKA-------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG--------------- 161 (373)
T ss_dssp HHHH-------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHH-------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 8764 3333333222 445677888999999999999999986653
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccC----------HH-----HHHHHHHhcCCHHHHHHH
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNE----------WK-----LAIKMYRSLNLWEDAYRI 1182 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~----------~~-----~~~~~y~~~g~~~~A~~~ 1182 (1637)
+++.....++....++..+|..+...|++++|..+|.++.. +. ..+..+...|++++|.+.
T Consensus 162 ----l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 162 ----IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp ----HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111111222346778889999999999999999888721 11 122346678888888888
Q ss_pred HHhcCCcc---------chHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHH
Q psy12802 1183 ALSNGGQE---------AVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKY 1253 (1637)
Q Consensus 1183 ~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 1253 (1637)
+++..... .+..++..+...|++++|+..+.++. ......+. +....+++..+
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~------~~~~~~~~------------~~~~~~~~~~l 299 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN------ENARSLRL------------MSDLNRNLLLL 299 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHTTC------------HHHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCcc------------hhhHHHHHHHH
Confidence 87754321 12455666666677777766664431 11111111 11233577788
Q ss_pred HHHHHhCCChHHHHHHHHHc
Q psy12802 1254 ALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1254 a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|..+...|++++|...|.++
T Consensus 300 a~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999998887
No 264
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.20 E-value=1.9e-08 Score=118.45 Aligned_cols=281 Identities=9% Similarity=0.006 Sum_probs=170.2
Q ss_pred EECCCCCeEEEEEC--CC---eEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe----------CCCcEE
Q psy12802 53 AFSPDSTKLAVAQS--DN---IIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ----------SDGKIK 116 (1637)
Q Consensus 53 ~~spd~~~la~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~----------~d~~v~ 116 (1637)
...|+++++.++.. .+ +|.+||..++ +.+........+ .+.+||||+ ++++. .++.|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~----~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG----SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCC----eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 45688888777653 22 8899999875 334333222233 999999999 66554 367899
Q ss_pred EEEcCCCce-eeeccc-------CCcEEEEEEecCCCeEEEEeC--CCcEEEEEecCCCCcccccccc-cccCCCCcEEE
Q psy12802 117 AAHVKANKT-QTLYAS-------NSFVVALCLNVRGAGVLSGHA--DGSIVRYYVTEDASNFDQQQGR-VVQHPVPPYAL 185 (1637)
Q Consensus 117 vwd~~~~~~-~~~~~~-------~~~v~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~~g~~~~~~~-~~~~~~~v~~~ 185 (1637)
+||..+.+. ..+... ......+.|+|||++|++++. +++|.++| .+. +.+.. +. ....+...
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~-----~~~~~~i~-~~~~~~~~ 173 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG-----SSDDQLLS-SPTCYHIH 173 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC-----CEEeEEcC-CCceEEEE
Confidence 999998876 333211 234568999999999998874 57899999 763 44444 32 22222222
Q ss_pred EecCCeEEEEecCCeEEEEeCCCceeEEeeccCC-CCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCc----cc
Q psy12802 186 SWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAP-HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSV----WE 259 (1637)
Q Consensus 186 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~----~~ 259 (1637)
.+.+..+++.+.||.+.++|.+++.......... .....-.....+++++..++..+..+ +.+.|+...... |.
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred eCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 2233467777889999999986665533221000 01111123356677766655555555 778777543211 11
Q ss_pred cCCCcccC---CCcceeEEEEcCCCCEEEEEec----------CCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCC
Q psy12802 260 EQPNKTIP---NLYTISALSWKRDGSRIACGGL----------CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG 326 (1637)
Q Consensus 260 ~~~~~~~~---~~~~i~~l~~spdg~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (1637)
........ .......+.++||++.+.+... .+.|.++|..+++.+.+ +
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~-----------------i-- 314 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-----------------I-- 314 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE-----------------E--
Confidence 10000000 1122445788999988777653 35788888865543321 1
Q ss_pred CCCCceeEEecccCceeeEEEEecCce-EEEE-e-CCCcEEEeeccccceeee
Q psy12802 327 ESKGRGVILKSQYGYEITDVAIMGNDR-YLVA-R-TPDTLLLGDLHRNLLSEV 376 (1637)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~v~~s~~~~-~lv~-~-~~~~i~i~d~~~~~~~~~ 376 (1637)
..+.....+.|+||++ ++++ . .++.|.++|..+++....
T Consensus 315 -----------~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 315 -----------SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -----------ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 1122577899999987 5555 4 489999999998877643
No 265
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=1.1e-09 Score=126.22 Aligned_cols=222 Identities=9% Similarity=0.100 Sum_probs=153.7
Q ss_pred CceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 12 NVLQDDVFNLDIV-RLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 12 ~~i~~~~~spdg~-~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
.....++|+|+|+ ++.++..++.|+.|+.. ++ +...+.+++|+|+|+.+++...++.|.+|+... ....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g---~~~~ 120 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG---QAHL 120 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC---CEEE
Confidence 4456899999998 55566667899999974 43 355789999999998666555567899998752 1222
Q ss_pred Eeecc-C-CCCCEEEEEEcCCCC-EEE----EeC-------------CCcEEEEEcCCCceeeecccCCcEEEEEEecCC
Q psy12802 85 ICNKF-I-QQCPVTTMVWLADGP-IIY----GQS-------------DGKIKAAHVKANKTQTLYASNSFVVALCLNVRG 144 (1637)
Q Consensus 85 ~~~~~-~-~~~~v~~v~~s~~~~-l~~----~~~-------------d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g 144 (1637)
+.... + ....+..++++|+|+ +++ |.. .+.|..+|..+++...+. .......++|+|||
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg 199 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDE 199 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTS
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCC
Confidence 22111 1 124567899999999 554 332 356888888788774444 55667899999999
Q ss_pred CeEEEEeCC------CcEEEEEecCCCCccccccccc-ccCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCceeEEeec
Q psy12802 145 AGVLSGHAD------GSIVRYYVTEDASNFDQQQGRV-VQHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDY 216 (1637)
Q Consensus 145 ~~l~s~~~d------g~i~iwd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 216 (1637)
+.|+++... +.|.+|++..... .....+ ......+..+.+++ +.+.+++. +.|.+|+.+|+.+..+..
T Consensus 200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~l---~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 200 QTLYVSQTPEQGHGSVEITAFAWRDGAL---HDRRHFASVPDGLPDGFCVDRGGWLWSSSG-TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp SEEEEEECCC---CCCEEEEEEEETTEE---EEEEEEECCSSSCCCSEEECTTSCEEECCS-SEEEEECTTSCEEEEEEC
T ss_pred CEEEEEecCCcCCCCCEEEEEEecCCCc---cCCeEEEECCCCCCCeEEECCCCCEEEecC-CcEEEECCCCCEEEEEEC
Confidence 988877665 7899999875310 000111 11234566788876 46666664 459999999999888874
Q ss_pred cCCCCCCccEEEEEECCCCCEEEEEecCcEEE
Q psy12802 217 TAPHYKEREFTVACSSPSGQAVVVGSYDNIKL 248 (1637)
Q Consensus 217 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i 248 (1637)
+ . .+.+++|+|+++.|.+++.+++..
T Consensus 276 ~-----~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 276 P-----G-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp S-----S-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred C-----C-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 3 1 478899999999999988887433
No 266
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=6.5e-10 Score=126.23 Aligned_cols=204 Identities=10% Similarity=0.066 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhccCH------HHHHHHHHH----cCCHHHHHHHHHhhcChhhHHHHHHHHHHHH
Q psy12802 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHCDMH------EQIVDMYHQ----TGQWEKAYAIAEQHLNVGEIKATFIQKCKQL 1086 (1637)
Q Consensus 1017 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~ 1086 (1637)
+.++..+|..|...|++++|+++|.++... ..+..+|.. .+++++|++.+++..+. ..+..+..+|..|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~ 84 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 445555555555555555555555554221 112333444 44444444444433221 1345556666666
Q ss_pred HH----cCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH----ccCHHHHHHHHH
Q psy12802 1087 EE----ENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEE----SKNYKQAEKYYL 1158 (1637)
Q Consensus 1087 ~~----~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~y~ 1158 (1637)
.. .+++++|+.+|.++-.. ....++..+|..|.. .|++++|+.+|.
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~--------------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDL--------------------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHc--------------------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 66 66666666665543110 123445555555555 555555555555
Q ss_pred HccC------HHHHHHHHHh----cCCHHHHHHHHHh---cCCccchHHHHHHHHH----hcCcchHHHHHHHhccHHHH
Q psy12802 1159 DCNE------WKLAIKMYRS----LNLWEDAYRIALS---NGGQEAVEPVVYLWAK----SLGGDSAVRLLNRLSLLESC 1221 (1637)
Q Consensus 1159 ~a~~------~~~~~~~y~~----~g~~~~A~~~~~~---~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 1221 (1637)
++-+ +..+..+|.. .+++++|+..+++ .++..++..++..+.. .+++++|++.|.++
T Consensus 139 ~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a------ 212 (273)
T 1ouv_A 139 KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA------ 212 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH------
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH------
Confidence 5411 2223333333 3444444433332 2334455666666666 56666666655443
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh----CCChHHHHHHHHHc
Q psy12802 1222 ISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLED----NGQFNEAETQFIKA 1273 (1637)
Q Consensus 1222 i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a 1273 (1637)
.....+..+..+|..|.. .+++++|+..|.++
T Consensus 213 --------------------~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 213 --------------------CELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred --------------------HhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 222347888999999999 99999999999988
No 267
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=2.1e-09 Score=123.94 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+..+|.+|...|++++|+.+|.++ ++++ ....++.....++..+|.+|.. |++++|+
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~A------l~l~-------------~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKA------SVMY-------------VENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHH------HHHH-------------HTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH------HHHH-------------HHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 335567888888888888888887654 3333 3333333245678899999988 9999999
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
.+|.++.. +.....+......++..+|.+|..+|+|++|+.+|.++ +.++.+.+.
T Consensus 136 ~~~~~Al~-------------------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~ 190 (307)
T 2ifu_A 136 HLYQQAAA-------------------VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE------KSMYKEMEN 190 (307)
T ss_dssp HHHHHHHH-------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTC
T ss_pred HHHHHHHH-------------------HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcCC
Confidence 99877533 22222223345678999999999999999999996653 333333222
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
. .....++..+|..+...|++++|..+|.++
T Consensus 191 ~------------~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 191 Y------------PTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp H------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 122346788999999999999999999987
No 268
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=8.8e-10 Score=125.16 Aligned_cols=207 Identities=13% Similarity=0.067 Sum_probs=122.9
Q ss_pred HHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHH
Q psy12802 1050 VDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEE----ENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLV 1125 (1637)
Q Consensus 1050 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~ 1125 (1637)
...|.+.|++++|++.+++... +..+.++..+|..|.. .|++++|+.+|.++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a----------------------- 68 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA----------------------- 68 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-----------------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH-----------------------
Confidence 4445555555555555555433 2334455555555555 55555555554442
Q ss_pred HhhCCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHccC------HHHHHHHHHh----cCCHHHHHHHHHhc---CC
Q psy12802 1126 RNYHPDLLDTTLLHLAQECEE----SKNYKQAEKYYLDCNE------WKLAIKMYRS----LNLWEDAYRIALSN---GG 1188 (1637)
Q Consensus 1126 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~y~~a~~------~~~~~~~y~~----~g~~~~A~~~~~~~---~~ 1188 (1637)
.......++..+|..|.. .+++++|+.+|.++-+ +..+..+|.. .+++++|++.+++. ++
T Consensus 69 ---~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 69 ---CDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp ---HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---HHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 111135677888888888 8888888888887721 3344444554 55555555544331 23
Q ss_pred ccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHh----CCChH
Q psy12802 1189 QEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLED----NGQFN 1264 (1637)
Q Consensus 1189 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~----~g~~~ 1264 (1637)
..++..++..+.... ...+++++|+..+++......+..+..+|..|.. .++++
T Consensus 146 ~~a~~~lg~~~~~~~----------------------~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 146 GDGCTILGSLYDAGR----------------------GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHHTS----------------------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHHcCC----------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 333344444443300 0044444444444444334457788889988888 88888
Q ss_pred HHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHh----cCChhhHHHHHHHh
Q psy12802 1265 EAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFE----NENFSKFETLLLRA 1331 (1637)
Q Consensus 1265 ~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a 1331 (1637)
+|+..|.++ + +.++ +..+..++..+.. .+++++|+.+|.++
T Consensus 204 ~A~~~~~~a------~-----------------~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 204 EALARYSKA------C-----------------ELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHHHH------H-----------------HTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHHHHH------H-----------------hCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 888888877 2 1222 5778888999988 89999999888764
No 269
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.17 E-value=6.8e-09 Score=119.53 Aligned_cols=280 Identities=13% Similarity=0.056 Sum_probs=176.3
Q ss_pred EEEECCCCCeEEEEEC-----CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe----------CCCc
Q psy12802 51 GLAFSPDSTKLAVAQS-----DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ----------SDGK 114 (1637)
Q Consensus 51 ~~~~spd~~~la~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~----------~d~~ 114 (1637)
.....||++++.+... ++.|.+.|..+. +++........+ . +.+||||+ +++++ .++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCC----eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 4566899999988765 679999999884 444333323334 4 99999999 65554 3678
Q ss_pred EEEEEcCCCce-eeeccc-------CCcEEEEEEecCCCeEEEEeC--CCcEEEEEecCCCCcccccccccccCCCCcEE
Q psy12802 115 IKAAHVKANKT-QTLYAS-------NSFVVALCLNVRGAGVLSGHA--DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYA 184 (1637)
Q Consensus 115 v~vwd~~~~~~-~~~~~~-------~~~v~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~ 184 (1637)
|.+||..+++. .++.-. ......+.|+|||+++++++. +++|.++|+.+. +.+.++....+ .
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-----~vv~tI~v~g~---~ 182 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-----AFKRMLDVPDC---Y 182 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----EEEEEEECCSE---E
T ss_pred EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-----cEEEEEECCCc---c
Confidence 99999999987 444311 234667899999999888874 689999999874 45555532111 1
Q ss_pred EEec--CCeEEEEecCCeEEEEe-C-CCceeEEeeccCCCCCCccE-EEEEEC-CCCCEEEEEecCc-EEEEEeCCCCCc
Q psy12802 185 LSWP--AGYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREF-TVACSS-PSGQAVVVGSYDN-IKLFAWSPSKSV 257 (1637)
Q Consensus 185 ~~~~--~~~l~~~~~d~~i~iwd-~-~~~~~~~~~~~~~~~~~~~i-~~~~~s-p~g~~l~~~~~d~-i~i~~~~~~~~~ 257 (1637)
..+. ...+++.+.||++.+.+ . .++.........+ .....+ ....|. ++|++++ .+.++ +.+.|.......
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec-cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce
Confidence 2222 24677888999999998 3 3665432211111 111122 224554 6786555 44456 888888654321
Q ss_pred ----cccCCCccc-C--CCcceeEEEEcCCCCEEEEEec----------CCcEEEEEccccceeeeCcEEEEEecCCeEE
Q psy12802 258 ----WEEQPNKTI-P--NLYTISALSWKRDGSRIACGGL----------CGSVELFESVLKRTIWKGKFEMIYVSPSQVL 320 (1637)
Q Consensus 258 ----~~~~~~~~~-~--~~~~i~~l~~spdg~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 320 (1637)
|........ . .......++++|+++++++... .+.|.++|+.+++.+..
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~-------------- 326 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-------------- 326 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE--------------
T ss_pred eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE--------------
Confidence 110000000 0 1123445777999998887653 24688888877665432
Q ss_pred EecCCCCCCCceeEEecccCceeeEEEEecCce-E-EEE-eCCCcEEEeeccccceeee
Q psy12802 321 VKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-Y-LVA-RTPDTLLLGDLHRNLLSEV 376 (1637)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~-lv~-~~~~~i~i~d~~~~~~~~~ 376 (1637)
+.+ +..+.++.++++++ . +++ ..++.|.++|..+++....
T Consensus 327 ------------i~v----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 327 ------------FEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp ------------EEE----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ------------EEC----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 111 23688999999975 4 444 3488999999988876643
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.2e-05 Score=106.18 Aligned_cols=403 Identities=10% Similarity=0.028 Sum_probs=231.0
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------------cccceEEEEECC--CCCeEEEEECCCeEEEE
Q psy12802 10 SSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR--------------KSYVVKGLAFSP--DSTKLAVAQSDNIIFIY 73 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~--------------h~~~V~~~~~sp--d~~~la~~~~d~~i~iw 73 (1637)
.+..|+++...++|..|-.++.++.+..||..+++ ....|.++...+ +|. |-+++.++.|..|
T Consensus 64 ~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~ 142 (781)
T 3v9f_A 64 TGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYL 142 (781)
T ss_dssp SCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEE
T ss_pred cccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEE
Confidence 45679999999999833345555568889876543 123588888887 665 4456645568888
Q ss_pred EcCCCCCCceeEeecc-----CCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeecc--------cCCcEEEEEE
Q psy12802 74 KLGDDWGDKKVICNKF-----IQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYA--------SNSFVVALCL 140 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~l~~ 140 (1637)
+..++ +...... .....|.++...++|.+..++.++-|..||..+++...+.. ....|.++..
T Consensus 143 ~~~~~----~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 218 (781)
T 3v9f_A 143 DIATG----KFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYK 218 (781)
T ss_dssp ETTTT----EEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEE
T ss_pred ECCCC----eEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEE
Confidence 87653 2221111 12356888888888886667777569999998876533321 1356899998
Q ss_pred ecCCCeEEEEeCCCcEEEEEecCCCCcccccccccc--------cCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCcee
Q psy12802 141 NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVV--------QHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVH 211 (1637)
Q Consensus 141 s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~--------~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 211 (1637)
.++|...+ |+.+ -+.+||..+.. ...+. .....|.++...+ +.+..|+..+.|.++|.....+
T Consensus 219 d~~g~lwi-gt~~-Gl~~~d~~~~~------~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 219 DTNGNIWI-GTSK-GLALFNANTET------FTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp CTTCCEEE-EETT-EEEEEETTTTE------EEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--
T ss_pred cCCCCEEE-EeCC-cHheECCCCCc------EEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCee
Confidence 88887655 4444 58888876421 11111 1245688888865 5888888867888899544433
Q ss_pred EEeec-------c---CCCCCCccEEEEEECCCCCEEEEEe-cCcEEEEEeCCCCCcc-ccCC---CcccCCCcceeEEE
Q psy12802 212 RIFDY-------T---APHYKEREFTVACSSPSGQAVVVGS-YDNIKLFAWSPSKSVW-EEQP---NKTIPNLYTISALS 276 (1637)
Q Consensus 212 ~~~~~-------~---~~~~~~~~i~~~~~sp~g~~l~~~~-~d~i~i~~~~~~~~~~-~~~~---~~~~~~~~~i~~l~ 276 (1637)
..+.. . ........|.++...++|.+- +|+ ..||..++.....-.. .... ....-....|.++.
T Consensus 291 ~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 369 (781)
T 3v9f_A 291 LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC 369 (781)
T ss_dssp -------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE
T ss_pred eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE
Confidence 33221 0 000234579999999998754 555 5558887765433211 1000 01111234688999
Q ss_pred EcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEE
Q psy12802 277 WKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV 356 (1637)
Q Consensus 277 ~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv 356 (1637)
..++|. |.+|+.++.|..|+..+++...- ..+. .+ ....|.++...+++.+.+
T Consensus 370 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~-------~~~~-----~~--------------~~~~v~~i~~d~~g~lWi 422 (781)
T 3v9f_A 370 DDGQGK-LWIGTDGGGINVFENGKRVAIYN-------KENR-----EL--------------LSNSVLCSLKDSEGNLWF 422 (781)
T ss_dssp ECTTSC-EEEEEBSSCEEEEETTEEEEECC-----------------C--------------CCSBEEEEEECTTSCEEE
T ss_pred EcCCCC-EEEEeCCCcEEEEECCCCeEEEc-------cCCC-----CC--------------CCcceEEEEECCCCCEEE
Confidence 988887 55677777788898754322100 0000 01 123688888888888888
Q ss_pred EeCCCcEEEeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCC
Q psy12802 357 ARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPN 436 (1637)
Q Consensus 357 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~ 436 (1637)
++.++.+..+|..+++....... + .....+.++...+++...+... .++ +.+++....|.....
T Consensus 423 gt~~~Gl~~~~~~~~~~~~~~~~--~-----~~~~~v~~i~~d~~g~lwigt~-~Gl--------~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 423 GTYLGNISYYNTRLKKFQIIELE--K-----NELLDVRVFYEDKNKKIWIGTH-AGV--------FVIDLASKKVIHHYD 486 (781)
T ss_dssp EETTEEEEEECSSSCEEEECCST--T-----TCCCCEEEEEECTTSEEEEEET-TEE--------EEEESSSSSCCEEEC
T ss_pred EeccCCEEEEcCCCCcEEEeccC--C-----CCCCeEEEEEECCCCCEEEEEC-Cce--------EEEeCCCCeEEeccc
Confidence 87778899999887766544221 0 0022344555555333222221 322 223332222211100
Q ss_pred cc--CCCcceeeeeeeccCCCeEEeeccCCcEEEeh
Q psy12802 437 KT--IPNLYTISALSWKRDGSRIACGGLCGSVELFE 470 (1637)
Q Consensus 437 ~~--~~~~~~I~~l~~s~dg~~la~g~~dg~v~lw~ 470 (1637)
.. ......|.++...++|...+.....| +..|+
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence 00 01135688999888887554333345 43444
No 271
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.6e-10 Score=131.41 Aligned_cols=226 Identities=16% Similarity=0.153 Sum_probs=147.6
Q ss_pred CCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhC---CCChHHHHHHHHHHHHhccc
Q psy12802 897 LENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKIN---PKNVTALEEEWGDHLIENKQ 973 (1637)
Q Consensus 897 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~---~~~~~~l~~~~~~~l~~~~~ 973 (1637)
|.....+..++..+...|++++|..+|+ ++++++.... ++........+|..+...|+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 84 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCK-------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHH-------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 3445566667777766666666665554 4555555442 34455677789999999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhh--ccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCH-----
Q psy12802 974 YNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVI--TNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMH----- 1046 (1637)
Q Consensus 974 ~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 1046 (1637)
+++|+.+|.++. .+.+.. .++.....++..+|..|...|++++|+.+|.++...
T Consensus 85 ~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 85 YKDAANLLNDAL-------------------AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 999999987642 222222 122225667888888888899999998888887543
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHHHhhcC---------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCch
Q psy12802 1047 -----------EQIVDMYHQTGQWEKAYAIAEQHLN---------VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPD 1106 (1637)
Q Consensus 1047 -----------~~~~~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~ 1106 (1637)
..+..+|...|++++|++.+++... .+....++..+|..|..+|++++|+.+|.++....
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2256777888888888888776432 35567789999999999999999999988854321
Q ss_pred HH----------------H-------HHHHhcCCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1107 LA----------------I-------SMFKNQRQYENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1107 ~a----------------i-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
.. . ..+...+.+.++...+..... +....++..+|..|...|++++|+.+|.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 0 012222333333333333222 344567888888888888888888888877
No 272
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.16 E-value=5e-09 Score=120.18 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=148.5
Q ss_pred CCCceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC-----cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCce
Q psy12802 10 SSNVLQDDVFNLDIV-RLRSEGNVAGIWAWRGQNGR-----KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 10 ~~~~i~~~~~spdg~-~la~~~~d~~i~vwd~~~~~-----h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~ 83 (1637)
....--.+.|+|++. ++.+....+.|+.||..++. ....+.+++|+|+|++++ +. ++.|.+||..++ ..+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g--~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQ--SAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTT--EEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCC--cEE
Confidence 334556889999654 55556667899999998775 356799999999999554 44 567999998764 122
Q ss_pred eEeeccC--CCCCEEEEEEcCCCC-EEEEeC---------CCcEEEEEcCC-CceeeecccCCcEEEEEEecCCCeEEE-
Q psy12802 84 VICNKFI--QQCPVTTMVWLADGP-IIYGQS---------DGKIKAAHVKA-NKTQTLYASNSFVVALCLNVRGAGVLS- 149 (1637)
Q Consensus 84 ~~~~~~~--~~~~v~~v~~s~~~~-l~~~~~---------d~~v~vwd~~~-~~~~~~~~~~~~v~~l~~s~~g~~l~s- 149 (1637)
.+..... ....+..++++|+|+ +++... ...-.+|.+.. ++...+..+......++|+|||+.+++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 2222211 234588999999999 444322 12334555442 444444455566789999999997654
Q ss_pred EeCCCcEEEEEecCCCCccccc-----ccccccCCCCcEEEEecC-CeEE-EEecCCeEEEEeC-CCceeEEeeccCCCC
Q psy12802 150 GHADGSIVRYYVTEDASNFDQQ-----QGRVVQHPVPPYALSWPA-GYIL-AAGSDRIVTIYES-DGRVHRIFDYTAPHY 221 (1637)
Q Consensus 150 ~~~dg~i~iwd~~~~~~g~~~~-----~~~~~~~~~~v~~~~~~~-~~l~-~~~~d~~i~iwd~-~~~~~~~~~~~~~~~ 221 (1637)
.+.++.|.+|++.... | .. ...+..+...+..+++++ +.+. +...++.|.+||. +|+.+..+..+
T Consensus 167 ~~~~~~i~~~~~d~~~-G--~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p---- 239 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQT-G--QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP---- 239 (297)
T ss_dssp EGGGTEEEEEEECTTT-C--CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS----
T ss_pred cCCCCcEEEEeccCCC-C--cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC----
Confidence 4557899999985211 1 11 122223446788899987 3444 4455778999995 59999888743
Q ss_pred CCccEEEEEEC-CCCCEEEEEec
Q psy12802 222 KEREFTVACSS-PSGQAVVVGSY 243 (1637)
Q Consensus 222 ~~~~i~~~~~s-p~g~~l~~~~~ 243 (1637)
...+++++|+ |+++.|.+++.
T Consensus 240 -~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 240 -VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -SSBEEEEEEESGGGCEEEEEEB
T ss_pred -CCCceEEEEeCCCCCEEEEEcC
Confidence 3479999998 89888776654
No 273
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=4.1e-10 Score=128.76 Aligned_cols=253 Identities=13% Similarity=0.077 Sum_probs=159.2
Q ss_pred cCCHHHHHHHHHhCCChHHHHHHHHHhC---CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHH
Q psy12802 926 TNENEKALECYRKGKVYDKCIDLTRKIN---PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKK 1002 (1637)
Q Consensus 926 ~~~~~~a~~~y~~~~~~~~A~~l~~~~~---~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~ 1002 (1637)
.++++.|+..|. +|++++++.. ++.....+..+|.++...|++++|+.+|.++
T Consensus 14 ~~~~~~A~~~~~------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------ 69 (283)
T 3edt_B 14 LVPRGSAVPLCK------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA------------------ 69 (283)
T ss_dssp CSCSSSHHHHHH------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred CCCHHHHHHHHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH------------------
Confidence 345555665655 6777766652 3455677889999999999999999998764
Q ss_pred HHHHHHhh--ccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhh--cChhhHHHH
Q psy12802 1003 AVQILQVI--TNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQH--LNVGEIKAT 1078 (1637)
Q Consensus 1003 A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~--~~~~~~~~~ 1078 (1637)
+.+.+.. .++.....++..+|.+|...|++++|+++|.++. ++.++. .+.+....+
T Consensus 70 -l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 70 -LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-------------------EIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp -HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------------------HHHHHHHCTTCHHHHHH
T ss_pred -HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------HHHHHHcCCCChHHHHH
Confidence 2233332 2222267789999999999999999999997753 333332 123567888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhC---CCchHHHHHHHHHHHHHccCHHHHHH
Q psy12802 1079 FIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYH---PDLLDTTLLHLAQECEESKNYKQAEK 1155 (1637)
Q Consensus 1079 ~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~ 1155 (1637)
+..+|..|...|++++|+.+|.++ +++..... .+....++..+|..+...|++++|+.
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRA-------------------LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-------------------HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-------------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999986653 23333221 22345688999999999999999999
Q ss_pred HHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHH
Q psy12802 1156 YYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAF 1235 (1637)
Q Consensus 1156 ~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~ 1235 (1637)
+|.++-....-. ..+. ........+..++..+...+....+.. +..+.
T Consensus 191 ~~~~~l~~~~~~----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 238 (283)
T 3edt_B 191 LYKEILTRAHEK----EFGS--------VNGDNKPIWMHAEEREESKDKRRDSAP--------------------YGEYG 238 (283)
T ss_dssp HHHHHHHHHHHH----HSSS--------CCSSCCCHHHHHHHHHHTTCCCCC----------------------------
T ss_pred HHHHHHHHHHHh----cCCC--------cchhHHHHHHHHHHHHhcCCchhHHHH--------------------HHHHH
Confidence 999882210000 0000 000111122223322222222222111 11222
Q ss_pred HHHHhcC--CCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1236 ELAKIGM--KSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1236 ~l~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
...+... .+..+.++..+|..|...|++++|+..|.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222221 3445678889999999999999999999987
No 274
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.15 E-value=2.1e-06 Score=113.51 Aligned_cols=402 Identities=7% Similarity=0.018 Sum_probs=235.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------ccc-eEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 14 LQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK--------SYV-VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h--------~~~-V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
|.++...++|.+.+... +.|..||..+++. ... |.++...++|...+ ++.++.|..|+..++ +.
T Consensus 133 i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~----~~ 205 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTP--EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQK----TF 205 (795)
T ss_dssp CCEEEEEETTEEEEEET--TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTC----CE
T ss_pred EEEEEECCCCCEEEEEC--CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCC----eE
Confidence 78888888988766543 5688999766541 123 88999888886554 666555888987653 11
Q ss_pred Eee-ccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeecc--------cCCcEEEEEEecCCCeEEEEeCCCc
Q psy12802 85 ICN-KFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYA--------SNSFVVALCLNVRGAGVLSGHADGS 155 (1637)
Q Consensus 85 ~~~-~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~l~~s~~g~~l~s~~~dg~ 155 (1637)
... ...+...|.++...++|.+..++.++-+..||..+++...+.. ....|.++...++|...+ |+.+ -
T Consensus 206 ~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G 283 (795)
T 4a2l_A 206 EKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-D 283 (795)
T ss_dssp EECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-C
T ss_pred EEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-h
Confidence 111 1123567899988888886666655559999998877633321 135699999998887554 5555 5
Q ss_pred EEEEEecCCCCcccccccccc--------cCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCceeEEeeccC--CCCCCc
Q psy12802 156 IVRYYVTEDASNFDQQQGRVV--------QHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTA--PHYKER 224 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~--------~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~ 224 (1637)
|.+||..+. . ...+. -....|.++..++ +.+..|+.++.|..|+........+.... ..-...
T Consensus 284 l~~~~~~~~-----~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~ 357 (795)
T 4a2l_A 284 LNIYHEGTD-----S-FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDN 357 (795)
T ss_dssp EEEEETTTT-----E-EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCS
T ss_pred hheEcCCCC-----e-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCC
Confidence 888887642 1 11111 1235688888876 58888999889999984444333333211 001345
Q ss_pred cEEEEEECCCCCEEEEEecC-cEEEEEeCCCCCccccCCC-c-c-cCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc
Q psy12802 225 EFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPN-K-T-IPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 225 ~i~~~~~sp~g~~l~~~~~d-~i~i~~~~~~~~~~~~~~~-~-~-~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
.|.++...++|.+-+ |+.+ |+..|+.....-..-.... . . .-....|.++...++|..|.+|+.++.|..||..+
T Consensus 358 ~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp SEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred eeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 699999999987555 5555 5888876544321100000 0 0 01235788999988888566688878899999865
Q ss_pred cceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeeccccceeeeecCC
Q psy12802 301 KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPD 380 (1637)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~~~~~~~ 380 (1637)
++...- ... .+ . .....|.++...++|.+.+++. +.+.+||..+++........
T Consensus 437 ~~~~~~-------~~~---------~~----~-----l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 437 GQVENF-------NQR---------NS----Q-----LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp CCEEEE-------CTT---------TS----C-----CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCT
T ss_pred CcEEEe-------ecC---------CC----C-----cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccc
Confidence 543210 000 00 0 1123688888888888888866 67999998877665442210
Q ss_pred CCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCC--CccCCCcceeeeeeeccCCCeEE
Q psy12802 381 SGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQP--NKTIPNLYTISALSWKRDGSRIA 458 (1637)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~--~~~~~~~~~I~~l~~s~dg~~la 458 (1637)
.. .. ...+.+.++..++++...+... .++. .+++....+.... .........|.++..+++|...+
T Consensus 491 ~~--~~-~~~~~i~~i~~d~~g~lWigt~-~Gl~--------~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 558 (795)
T 4a2l_A 491 DG--TP-VVSKQITTLFRDSHKRLWIGGE-EGLS--------VFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV 558 (795)
T ss_dssp TC--CB-CCCCCEEEEEECTTCCEEEEES-SCEE--------EEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred cc--cc-cCCceEEEEEECCCCCEEEEeC-CceE--------EEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence 00 00 0123455666666333222222 3322 1222111110000 01112335788999999888554
Q ss_pred eeccCCcEEEehh
Q psy12802 459 CGGLCGSVELFES 471 (1637)
Q Consensus 459 ~g~~dg~v~lw~~ 471 (1637)
. +..| +..||.
T Consensus 559 g-T~~G-l~~~d~ 569 (795)
T 4a2l_A 559 G-TREG-FYCFNE 569 (795)
T ss_dssp E-ESSC-EEEEET
T ss_pred E-eCCC-ceeECC
Confidence 3 3334 445553
No 275
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.15 E-value=8.1e-10 Score=116.64 Aligned_cols=164 Identities=15% Similarity=0.068 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+.+|..+|..|...|++++|++.|.++... .|....++..+|.+|..+|++++|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-------------------------~p~~~~~~~~la~~~~~~~~~~~a 58 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-------------------------DPNNVETLLKLGKTYMDIGLPNDA 58 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4668999999999999999999999886432 255577888999999999999998
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCC
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNL 1175 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~ 1175 (1637)
+..+.++ + ...+ ....++..+|..+...+++++|...+.++
T Consensus 59 ~~~~~~~----------------------~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a--------------- 99 (184)
T 3vtx_A 59 IESLKKF----------------------V-VLDT-TSAEAYYILGSANFMIDEKQAAIDALQRA--------------- 99 (184)
T ss_dssp HHHHHHH----------------------H-HHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHH----------------------H-hcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Confidence 8876552 1 1122 23567788899999999999999988887
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHH
Q psy12802 1176 WEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYAL 1255 (1637)
Q Consensus 1176 ~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~ 1255 (1637)
+...+.+..++..+|..+.+.|++++|++.|.++ + ...|..+.++..+|.
T Consensus 100 ------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~-------------------l-----~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 100 ------IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT-------------------I-----SIKPGFIRAYQSIGL 149 (184)
T ss_dssp ------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H-----HHCTTCHHHHHHHHH
T ss_pred ------HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH-------------------H-----HhcchhhhHHHHHHH
Confidence 4444555667778888888888888888887654 1 125667889999999
Q ss_pred HHHhCCChHHHHHHHHHc
Q psy12802 1256 VLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1256 ~~~~~g~~~~A~~~~~~a 1273 (1637)
.|...|++++|+..|.+|
T Consensus 150 ~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999988
No 276
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=9.2e-09 Score=119.63 Aligned_cols=222 Identities=14% Similarity=0.079 Sum_probs=146.6
Q ss_pred CceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC-----cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeE
Q psy12802 12 NVLQDDVFNLDIV-RLRSEGNVAGIWAWRGQNGR-----KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVI 85 (1637)
Q Consensus 12 ~~i~~~~~spdg~-~la~~~~d~~i~vwd~~~~~-----h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~ 85 (1637)
.....++|+|++. ++.+...++.|+.||..++. ....|.+++|+|+|+++++. . +.|.+||..++ ....+
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g--~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATG--VLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTC--CEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCC--cEEEE
Confidence 3456899999855 45555567889999988765 24579999999999877654 4 45889998764 12222
Q ss_pred eeccC--CCCCEEEEEEcCCCC-EEEEeC------CCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEE-eCCCc
Q psy12802 86 CNKFI--QQCPVTTMVWLADGP-IIYGQS------DGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG-HADGS 155 (1637)
Q Consensus 86 ~~~~~--~~~~v~~v~~s~~~~-l~~~~~------d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~ 155 (1637)
..... ....+.++.++|+|+ +++... .+.|..++ +++...+..+......++|+|||+.++.+ +.++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 22111 134688999999999 444332 24566666 56654444444567899999999877555 45789
Q ss_pred EEEEEec--CC-CCcccccccccccCCCCcEEEEecC-CeEEEE-ecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEE
Q psy12802 156 IVRYYVT--ED-ASNFDQQQGRVVQHPVPPYALSWPA-GYILAA-GSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVAC 230 (1637)
Q Consensus 156 i~iwd~~--~~-~~g~~~~~~~~~~~~~~v~~~~~~~-~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 230 (1637)
|.+|++. +. ...-......+......+..+.+++ +.+.++ ..++.|.+||.+++.+..+..+ ...+++++
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~-----~~~~~~~a 277 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP-----GKQTTCPA 277 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS-----CSBEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECC-----CCCcEEEE
Confidence 9999986 22 1100011112222345677888876 344444 4568999999888888877743 34699999
Q ss_pred EC-CCCCEEEEEecC
Q psy12802 231 SS-PSGQAVVVGSYD 244 (1637)
Q Consensus 231 ~s-p~g~~l~~~~~d 244 (1637)
|+ |+++.|.+++..
T Consensus 278 f~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 278 FIGPDASRLLVTSAR 292 (326)
T ss_dssp EESTTSCEEEEEEBC
T ss_pred EecCCCCEEEEEecC
Confidence 98 998877666543
No 277
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.15 E-value=1e-09 Score=115.91 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
+.+|..+|..|..+|+|++|+.+|.++ +-..+.+..++..+|..+.+.|++++|++.+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~a---------------------l~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~ 63 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKV---------------------LKADPNNVETLLKLGKTYMDIGLPNDAIESLK 63 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999999999998 55566677788888888888888888877775
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHH
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAE 1293 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~ 1293 (1637)
++ ....+..+.++..+|..+...+++++|...+.++
T Consensus 64 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a-------------------- 99 (184)
T 3vtx_A 64 KF------------------------VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA-------------------- 99 (184)
T ss_dssp HH------------------------HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HH------------------------HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence 54 1225667888899999999999999999988887
Q ss_pred HHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHH
Q psy12802 1294 RIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEI 1373 (1637)
Q Consensus 1294 ~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~ 1373 (1637)
....|. .+.++..+|..+...|++++|+..|.+ ++++ .
T Consensus 100 ---~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------~l~~----~--------------- 137 (184)
T 3vtx_A 100 ---IALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEK-------------------TISI----K--------------- 137 (184)
T ss_dssp ---HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHH----C---------------
T ss_pred ---HHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHH-------------------HHHh----c---------------
Confidence 333455 467888899999999988888877643 3322 2
Q ss_pred hcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch
Q psy12802 1374 NTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~ 1412 (1637)
|.+..++..+|.+|.++|++++|+.+|.++.+.++
T Consensus 138 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 138 ----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred ----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 23344689999999999999999999998775544
No 278
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.15 E-value=5.9e-10 Score=124.06 Aligned_cols=196 Identities=15% Similarity=0.067 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
..+..+|..+...|++++|+.+|.++... .|. ...++..+|..|...|++++|+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------~~~-~~~~~~~la~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE------------------------NKE-DAIPYINFANLLSSVNELERALA 78 (243)
T ss_dssp ------------------CCTTHHHHHTT------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------------------------Ccc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456777777777777777777665332 444 56788889999999999999888
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCH
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQY 1118 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~ 1118 (1637)
.|.++... .+....++..+|..+...|++++|+..|.++-
T Consensus 79 ~~~~~~~~-------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------------- 118 (243)
T 2q7f_A 79 FYDKALEL-------------------------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL--------------- 118 (243)
T ss_dssp HHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHc-------------------------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHH---------------
Confidence 88775322 13346778889999999999999988866531
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHH
Q psy12802 1119 ENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYL 1198 (1637)
Q Consensus 1119 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~ 1198 (1637)
+ ..+ ....++..+|..+...|++++|+.+|.++ +.....+..++..++..
T Consensus 119 -------~-~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------------~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 119 -------R-AGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA---------------------VELNENDTEARFQFGMC 168 (243)
T ss_dssp -------H-HTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHH
T ss_pred -------H-hCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH---------------------HHhCCccHHHHHHHHHH
Confidence 1 112 22467888999999999999999999887 22233445567778888
Q ss_pred HHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1199 WAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1199 ~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
+...|++++|++.|.++. ...+..+.++..+|..|...|++++|+..|.++
T Consensus 169 ~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVT------------------------EQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHTCCHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH------------------------HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888888876541 113456778999999999999999999999887
No 279
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.14 E-value=5.7e-10 Score=126.94 Aligned_cols=200 Identities=11% Similarity=-0.048 Sum_probs=106.3
Q ss_pred ChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 956 NVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 956 ~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
.....+..+|..+...|++++|+.+|.++... .|+ .+.++..+|.+|...|++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI------------------------RPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------------------------CCC-cHHHHHHHHHHHHHccCHHH
Confidence 34556667788888888888888777664321 333 45566666666666666666
Q ss_pred HHHHHHhccCH--------HHHHHHHHHcCCHHHHHHHHHhhcCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCC--
Q psy12802 1036 AEKIYSHCDMH--------EQIVDMYHQTGQWEKAYAIAEQHLNV-GEIKATFIQKCKQLEEENKFKEAERLYLIIGE-- 1104 (1637)
Q Consensus 1036 A~~~~~~~~~~--------~~~~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~-- 1104 (1637)
|+++|.++... ..+..+|.+.|++++|++.+++.... |....... +...+...|++++|+..|.++..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 66666665321 22344555555555555555443221 11122221 22233445666666666644110
Q ss_pred -----chHHHHHHHhcCCHHHHHHHHHhhCCCc------hHHHHHHHHHHHHHccCHHHHHHHHHHc-----cCHHHHHH
Q psy12802 1105 -----PDLAISMFKNQRQYENMIKLVRNYHPDL------LDTTLLHLAQECEESKNYKQAEKYYLDC-----NEWKLAIK 1168 (1637)
Q Consensus 1105 -----~~~ai~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~y~~a-----~~~~~~~~ 1168 (1637)
......++...++.++|+..+.+..... ...++..+|..+...|++++|..+|.++ .++.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 254 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 254 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHH
Confidence 0011233444555555665555543321 1456777888888888888888888777 22333344
Q ss_pred HHHhcCCHHHHHH
Q psy12802 1169 MYRSLNLWEDAYR 1181 (1637)
Q Consensus 1169 ~y~~~g~~~~A~~ 1181 (1637)
++...|++++|++
T Consensus 255 ~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 255 ALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhhHH
Confidence 4444454544444
No 280
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.14 E-value=3.9e-10 Score=138.68 Aligned_cols=201 Identities=13% Similarity=0.032 Sum_probs=159.9
Q ss_pred CCCChHHHHHHHHHHHHhcccH-HHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Q psy12802 953 NPKNVTALEEEWGDHLIENKQY-NAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVK 1031 (1637)
Q Consensus 953 ~~~~~~~l~~~~~~~l~~~~~~-~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g 1031 (1637)
.++.....+..+|..+...|+| ++|+.+|.++... +|+ .+.+|..+|.+|...|
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~------------------------~p~-~~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL------------------------EPE-LVEAWNQLGEVYWKKG 151 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHHT
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh------------------------CCC-CHHHHHHHHHHHHHcC
Confidence 3456667888999999999999 9999998775332 455 6789999999999999
Q ss_pred CHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHh
Q psy12802 1032 DYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEE---------NKFKEAERLYLII 1102 (1637)
Q Consensus 1032 ~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~y~~~ 1102 (1637)
++++|+++|.++...+ |. ..++..+|.+|..+ |++++|+..|.++
T Consensus 152 ~~~~A~~~~~~al~~~-------------------------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC-------------------------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp CHHHHHHHHHHHHTTC-------------------------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-------------------------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 9999999998875432 23 47888999999998 8888888776553
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHc--------cCHHHHHHHHHHccCHHHHHHHHHhcC
Q psy12802 1103 GEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEES--------KNYKQAEKYYLDCNEWKLAIKMYRSLN 1174 (1637)
Q Consensus 1103 ~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~y~~a~~~~~~~~~y~~~g 1174 (1637)
++ ..| ....+|..+|..|... |++++|+.+|.++
T Consensus 206 -------------------l~----~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a-------------- 247 (474)
T 4abn_A 206 -------------------VQ----MDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA-------------- 247 (474)
T ss_dssp -------------------HH----HCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------------
T ss_pred -------------------HH----hCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH--------------
Confidence 11 123 3357899999999999 9999999999998
Q ss_pred CHHHHHHHHHhc---CCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHH
Q psy12802 1175 LWEDAYRIALSN---GGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHY 1251 (1637)
Q Consensus 1175 ~~~~A~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 1251 (1637)
+...+ .+..++..+|.++...|++++|++.|.++ + ...|..+..+.
T Consensus 248 -------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------l-----~l~p~~~~a~~ 296 (474)
T 4abn_A 248 -------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA-------------------A-----ALDPAWPEPQQ 296 (474)
T ss_dssp -------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H-----HHCTTCHHHHH
T ss_pred -------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------H-----HhCCCCHHHHH
Confidence 44444 56678889999999999999888888665 1 12466788899
Q ss_pred HHHHHHHhCCChHHHHHHHHHc
Q psy12802 1252 KYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1252 ~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.++..+...|++++|++.|.+.
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999988776
No 281
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.14 E-value=8.5e-10 Score=123.56 Aligned_cols=199 Identities=13% Similarity=0.003 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+..+|..+...|++++|+.+|.++... .|. ...++..+|..|...|++++|+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------------~~~-~~~~~~~la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------------DPS-SADAHAALAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------------CCC-hHHHHHHHHHHHHHcCCHHHHH
Confidence 456667888888888888888887664221 343 5678888999999999999888
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
++|.++... .+....++..+|..|...|++++|+++|.++...
T Consensus 92 ~~~~~a~~~-------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------ 134 (252)
T 2ho1_A 92 EEYRKALAS-------------------------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD------------ 134 (252)
T ss_dssp HHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHH-------------------------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC------------
Confidence 888775322 1334667888899999999999988887664320
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHH
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVY 1197 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~ 1197 (1637)
...+....++..+|..+...|++++|+.+|.++ +.....+..++..++.
T Consensus 135 ----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------------~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 135 ----------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS---------------------LRLNRNQPSVALEMAD 183 (252)
T ss_dssp ----------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCSCCHHHHHHHHH
T ss_pred ----------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HhcCcccHHHHHHHHH
Confidence 011334567888999999999999999998887 2223334445667777
Q ss_pred HHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1198 LWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1198 ~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.+...|++++|+..|.+. ....+..+..+..++..+...|++++|++.|.++
T Consensus 184 ~~~~~g~~~~A~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLF------------------------AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH------------------------HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777666543 1234556778888999999999999999888877
No 282
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=1.4e-08 Score=121.29 Aligned_cols=237 Identities=15% Similarity=0.058 Sum_probs=149.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
+.++...|++++|+..|.++ ..+....+...........++..+.. .|+++.|+..|.
T Consensus 60 ~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~la~~~~~-------------~G~~~~A~~~~~--- 117 (373)
T 1hz4_A 60 GEVLHCKGELTRSLALMQQT------EQMARQHDVWHYALWSLIQQSEILFA-------------QGFLQTAWETQE--- 117 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHH---
T ss_pred HHHHHhcCcHHHHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHH---
Confidence 56778889999999888776 33333321100011223334444444 444444555544
Q ss_pred ChHHHHHHHHHhCC---CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchH
Q psy12802 941 VYDKCIDLTRKINP---KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIA 1017 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~---~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~ 1017 (1637)
+++++.+.... +........+|.++...|++++|..+|.++. .+.....++. ..
T Consensus 118 ---~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------~~~~~~~~~~-~~ 174 (373)
T 1hz4_A 118 ---KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI-------------------EVLSSYQPQQ-QL 174 (373)
T ss_dssp ---HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHTTTSCGGG-GH
T ss_pred ---HHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------HHhhccCcHH-HH
Confidence 56666655432 3345566779999999999999999987642 2222222333 45
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhccCHH---------------HHHHHHHHcCCHHHHHHHHHhhcChh-----hHHH
Q psy12802 1018 QHVKTLAQHFKTVKDYKTAEKIYSHCDMHE---------------QIVDMYHQTGQWEKAYAIAEQHLNVG-----EIKA 1077 (1637)
Q Consensus 1018 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~y~~~g~~~~A~~~~~~~~~~~-----~~~~ 1077 (1637)
..+..+|..+...|++++|+.+|.++.... ..+..+...|++++|...+++..... ....
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 678889999999999999999998874220 12234667888888888877654311 1123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHH
Q psy12802 1078 TFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157 (1637)
Q Consensus 1078 ~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y 1157 (1637)
.+..+|..+..+|++++|...+.++ +......+.. .....++..+|..+...|++++|...|
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a------~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEEL------NENARSLRLM------------SDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTCH------------HHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHhCcch------------hhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4567788888888888888775542 2222222211 112346778899999999999999998
Q ss_pred HHc
Q psy12802 1158 LDC 1160 (1637)
Q Consensus 1158 ~~a 1160 (1637)
.++
T Consensus 317 ~~a 319 (373)
T 1hz4_A 317 LDA 319 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 283
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=2.6e-10 Score=145.26 Aligned_cols=167 Identities=14% Similarity=0.074 Sum_probs=136.6
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
|+....+..+|.+|.++|++++|+.+|+++... +|+ ...++.++|.+|.+.|+++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l------------------------~P~-~~~a~~nLg~~l~~~g~~~ 60 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV------------------------FPE-FAAAHSNLASVLQQQGKLQ 60 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CSC-CHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC-CHHHHHHHHHHHHHcCCHH
Confidence 455667789999999999999999998775332 565 7889999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHh
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKN 1114 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~ 1114 (1637)
+|+..|+++... .|....+|.++|.+|..+|++++|++.|.++
T Consensus 61 eA~~~~~~Al~l-------------------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kA------------ 103 (723)
T 4gyw_A 61 EALMHYKEAIRI-------------------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRA------------ 103 (723)
T ss_dssp HHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHh-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Confidence 999998876332 2556788999999999999999999987663
Q ss_pred cCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHH
Q psy12802 1115 QRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEP 1194 (1637)
Q Consensus 1115 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~ 1194 (1637)
++ ..| ....+|..+|..|...|++++|+..|+++ +........++..
T Consensus 104 -------l~----l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A---------------------l~l~P~~~~a~~~ 150 (723)
T 4gyw_A 104 -------IQ----INP-AFADAHSNLASIHKDSGNIPEAIASYRTA---------------------LKLKPDFPDAYCN 150 (723)
T ss_dssp -------HH----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCSCCHHHHHH
T ss_pred -------HH----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCChHHHhh
Confidence 11 123 34678999999999999999999999998 5666677778889
Q ss_pred HHHHHHHhcCcchHHHHHHHhc
Q psy12802 1195 VVYLWAKSLGGDSAVRLLNRLS 1216 (1637)
Q Consensus 1195 l~~~~~~~~~~~~A~~~~~~~~ 1216 (1637)
++..+...|++++|++.|.++.
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHH
Confidence 9999999999999988887753
No 284
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.13 E-value=5.4e-09 Score=121.55 Aligned_cols=237 Identities=13% Similarity=0.049 Sum_probs=154.3
Q ss_pred cceEEEEECCCCCeEEE-------EECCCeEEEEEcCCCCCCceeEee--ccCCCCCEEEEEEcCC-CCEEEEeCCCcEE
Q psy12802 47 YVVKGLAFSPDSTKLAV-------AQSDNIIFIYKLGDDWGDKKVICN--KFIQQCPVTTMVWLAD-GPIIYGQSDGKIK 116 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~-------~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~v~~v~~s~~-~~l~~~~~d~~v~ 116 (1637)
....+++|+|+|+.+++ ++.++.|.+||..++. ...+.. ..++...+.+++++++ |++..++..+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK--KTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC--EEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc--EEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 35679999999987777 5778999999976641 111111 0124467899999999 7755555555799
Q ss_pred EEEcCCCceeee-cc-----cCCcEEEEEEecCCCeEEEEeCC---------------CcEEEEEecCCCCccccccccc
Q psy12802 117 AAHVKANKTQTL-YA-----SNSFVVALCLNVRGAGVLSGHAD---------------GSIVRYYVTEDASNFDQQQGRV 175 (1637)
Q Consensus 117 vwd~~~~~~~~~-~~-----~~~~v~~l~~s~~g~~l~s~~~d---------------g~i~iwd~~~~~~g~~~~~~~~ 175 (1637)
+||.. ++...+ .. ....+.+++++|+|+..++...+ +.|..|+.. | .. ..+
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g--~~-~~~ 167 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----G--QM-IQV 167 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----S--CE-EEE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC----C--CE-EEe
Confidence 99998 776444 22 12458899999999888777655 456666543 1 22 222
Q ss_pred ccCCCCcEEEEec----CC--eEEEE-ecCCeEEEEe-C-CCceeE--EeeccCCCCCC-ccEEEEEECCCCCEEEEEec
Q psy12802 176 VQHPVPPYALSWP----AG--YILAA-GSDRIVTIYE-S-DGRVHR--IFDYTAPHYKE-REFTVACSSPSGQAVVVGSY 243 (1637)
Q Consensus 176 ~~~~~~v~~~~~~----~~--~l~~~-~~d~~i~iwd-~-~~~~~~--~~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~ 243 (1637)
..+...+..++|+ |+ .++++ ..++.|.+|| . +++... .+.... .+. ..+..++++++|++.++...
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEEEEET
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEEEEcC
Confidence 3344557889999 85 45444 5678999999 3 454211 111110 122 45788999999998888766
Q ss_pred Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEE-EEecCCcEEEEEccc
Q psy12802 244 DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGSVELFESVL 300 (1637)
Q Consensus 244 d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~-~~~~dg~v~iwd~~~ 300 (1637)
++ |.+|+..++.... ....+...+.+++|+|+|+.|. +...++.|..|+...
T Consensus 246 ~~~i~~~d~~~g~~~~-----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKM-----RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSE-----EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeE-----EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 66 8888866433211 1111235789999999999555 445568899998753
No 285
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=3.9e-10 Score=143.62 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=139.6
Q ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCC
Q psy12802 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENK 1091 (1637)
Q Consensus 1012 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 1091 (1637)
.|+ +++++++||..|.++|++++|+++|+++...+ |....++.++|.+|.++|+
T Consensus 5 ~P~-~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------------------------P~~~~a~~nLg~~l~~~g~ 58 (723)
T 4gyw_A 5 CPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVF-------------------------PEFAAAHSNLASVLQQQGK 58 (723)
T ss_dssp -CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------SCCHHHHHHHHHHHHHTTC
T ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCC
Confidence 455 78899999999999999999999998764322 5567889999999999999
Q ss_pred HHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHH
Q psy12802 1092 FKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYR 1171 (1637)
Q Consensus 1092 ~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~ 1171 (1637)
+++|+..|.++ ++ ..| ....+|..+|..|..+|++++|+++|+++
T Consensus 59 ~~eA~~~~~~A-------------------l~----l~P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kA----------- 103 (723)
T 4gyw_A 59 LQEALMHYKEA-------------------IR----ISP-TFADAYSNMGNTLKEMQDVQGALQCYTRA----------- 103 (723)
T ss_dssp HHHHHHHHHHH-------------------HH----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHH-------------------HH----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------
Confidence 99999987663 11 123 34688999999999999999999999998
Q ss_pred hcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHH
Q psy12802 1172 SLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHY 1251 (1637)
Q Consensus 1172 ~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 1251 (1637)
+........++..+|.++.+.|++++|++.|+++ + ...|..++++.
T Consensus 104 ----------l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A-------------------l-----~l~P~~~~a~~ 149 (723)
T 4gyw_A 104 ----------IQINPAFADAHSNLASIHKDSGNIPEAIASYRTA-------------------L-----KLKPDFPDAYC 149 (723)
T ss_dssp ----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H-----HHCSCCHHHHH
T ss_pred ----------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------H-----HhCCCChHHHh
Confidence 5556677778899999999999999999888665 1 22577899999
Q ss_pred HHHHHHHhCCChHHHHHHHHHc
Q psy12802 1252 KYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1252 ~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.+|..|...|++++|++.|.++
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHH
Confidence 9999999999999999999887
No 286
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=3.1e-10 Score=139.56 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHhCCH-HHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDY-KTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKE 1094 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 1094 (1637)
.+.++..+|..|...|++ ++|+++|.++...+ |....++..+|..|..+|++++
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------------------------p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------------------------PELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 688999999999999999 99999998764322 4457789999999999999999
Q ss_pred HHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHc---------cCHHHHHHHHHHccCHHH
Q psy12802 1095 AERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEES---------KNYKQAEKYYLDCNEWKL 1165 (1637)
Q Consensus 1095 A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~y~~a~~~~~ 1165 (1637)
|+..|.++-. ..|+ ..++..+|..|... |++++|+.+|.++
T Consensus 156 A~~~~~~al~-----------------------~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a----- 205 (474)
T 4abn_A 156 AHTCFSGALT-----------------------HCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA----- 205 (474)
T ss_dssp HHHHHHHHHT-----------------------TCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHh-----------------------hCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-----
Confidence 9998776421 1233 47889999999999 9999999999998
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHh--------cCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHH
Q psy12802 1166 AIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKS--------LGGDSAVRLLNRLSLLESCISNACDTYQFDFAFEL 1237 (1637)
Q Consensus 1166 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l 1237 (1637)
+...+.+..++..+|..+... |++++|++.|.++ +++
T Consensus 206 ----------------l~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a-------------------l~~ 250 (474)
T 4abn_A 206 ----------------VQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA-------------------EKV 250 (474)
T ss_dssp ----------------HHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------------------HHH
T ss_pred ----------------HHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH-------------------HHh
Confidence 555566677788888888887 7777777777554 111
Q ss_pred HHhcCCC---CcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHH
Q psy12802 1238 AKIGMKS---KLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKC 1314 (1637)
Q Consensus 1238 ~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~ 1314 (1637)
.+ ..+.+++.+|..|...|++++|++.|.++ .+++|+ .+..+..++..
T Consensus 251 -----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----------------------l~l~p~-~~~a~~~l~~~ 301 (474)
T 4abn_A 251 -----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA-----------------------AALDPA-WPEPQQREQQL 301 (474)
T ss_dssp -----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHCTT-CHHHHHHHHHH
T ss_pred -----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------HHhCCC-CHHHHHHHHHH
Confidence 34 67899999999999999999999999988 334565 46778888888
Q ss_pred HHhcCChhhHHHHHHHh
Q psy12802 1315 EFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1315 ~~~~~~~~~A~~~~~~a 1331 (1637)
+...|++++|+..+.+.
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88888888888766554
No 287
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.12 E-value=2.5e-09 Score=121.56 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+.++..+|..+...|++++|+.+|.++... .|....++..+|..|...|++++|
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------------------------~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI-------------------------RPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------------------------CCCcHHHHHHHHHHHHHccCHHHH
Confidence 6778999999999999999999999876432 133456778888888888888888
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccC-------HHHHHH
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNE-------WKLAIK 1168 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~-------~~~~~~ 1168 (1637)
+++|.++- + ..| ....++..+|..|...|++++|+.+|.++-. ......
T Consensus 97 ~~~~~~al-------------------~----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 97 YEAFDSVL-------------------E----LDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHH-------------------H----HCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHH-------------------h----cCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 88765531 1 112 1246777888888888888888888887711 112222
Q ss_pred HHHhcCCHHHHHHHHHhc----CCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCC
Q psy12802 1169 MYRSLNLWEDAYRIALSN----GGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKS 1244 (1637)
Q Consensus 1169 ~y~~~g~~~~A~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~ 1244 (1637)
.+...|++++|+..+++. ++......++..+...++.++|++.+.+.-...... .+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------~~ 212 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL--------------------AE 212 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--------------------HH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc--------------------cc
Confidence 333445555555544321 112222233333333344344444443321111100 01
Q ss_pred CcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1245 KLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1245 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
..+.++..+|..|...|++++|+..|.++
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12578889999999999999999999987
No 288
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.10 E-value=1.3e-08 Score=119.86 Aligned_cols=274 Identities=13% Similarity=0.067 Sum_probs=173.8
Q ss_pred CCCCCeEEEEECC-----CeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe----------CCCcEEEE
Q psy12802 55 SPDSTKLAVAQSD-----NIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ----------SDGKIKAA 118 (1637)
Q Consensus 55 spd~~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~----------~d~~v~vw 118 (1637)
.|+++++.++... +.|.++|..+. +++.....-..+ .+.++|||+ ++++. .++.|.++
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~----~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTG----RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTT----EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCC----EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence 3577877766543 69999999885 444433323344 899999999 66554 46789999
Q ss_pred EcCCCce-eeeccc-------CCcEEEEEEecCCCeEEEEeC--CCcEEEEEecCCCCcccccccccccCCCCcEEEEe-
Q psy12802 119 HVKANKT-QTLYAS-------NSFVVALCLNVRGAGVLSGHA--DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW- 187 (1637)
Q Consensus 119 d~~~~~~-~~~~~~-------~~~v~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~- 187 (1637)
|..+++. .++.-. ......+.|+|||+++++++. +++|.+.|+.+. +.+.++..... ..+.-
T Consensus 155 D~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-----kvv~~I~v~g~--~~~~p~ 227 (426)
T 3c75_H 155 DPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-----TFDRMLDVPDC--YHIFPA 227 (426)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-----EEEEEEECCSE--EEEEEE
T ss_pred ECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-----eEEEEEEcCCc--eeeccC
Confidence 9999987 444311 234567899999999999874 578999999874 44444432111 11111
Q ss_pred cCCeEEEEecCCeEEEEe-CCCceeEE----eeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCc----
Q psy12802 188 PAGYILAAGSDRIVTIYE-SDGRVHRI----FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSV---- 257 (1637)
Q Consensus 188 ~~~~l~~~~~d~~i~iwd-~~~~~~~~----~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~---- 257 (1637)
.+..+++.+.||++.+.+ .+++.... +... ...-...+.++|++..++..+..+ +.+.|.......
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~----~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE----DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT----TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC----CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 224667777889888888 55555432 2211 111122356899998888777777 888887644311
Q ss_pred cccCCCcccCC---CcceeEEEEcCCCCEEEEEec----------CCcEEEEEccccceeeeCcEEEEEecCCeEEEecC
Q psy12802 258 WEEQPNKTIPN---LYTISALSWKRDGSRIACGGL----------CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPL 324 (1637)
Q Consensus 258 ~~~~~~~~~~~---~~~i~~l~~spdg~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (1637)
|.......... ......+.++||++++++... ++.|.++|..+.+.+.+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~------------------ 365 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK------------------ 365 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE------------------
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE------------------
Confidence 11110011111 112234789999998776642 35799999877665422
Q ss_pred CCCCCCceeEEecccCceeeEEEEecCce-EEEE-e-CCCcEEEeeccccceee
Q psy12802 325 SGESKGRGVILKSQYGYEITDVAIMGNDR-YLVA-R-TPDTLLLGDLHRNLLSE 375 (1637)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~lv~-~-~~~~i~i~d~~~~~~~~ 375 (1637)
+.+ +.....+.|+|+++ ++++ . .++.|.++|+.+.++..
T Consensus 366 --------I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 366 --------IEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp --------EEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred --------EEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 111 22577899999976 5555 4 58999999999887654
No 289
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.07 E-value=1.5e-08 Score=121.26 Aligned_cols=230 Identities=10% Similarity=0.038 Sum_probs=155.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc------ccceEEEEECCCCCeEEEEECCC--eEEEEEcCCCCCCce
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQSDN--IIFIYKLGDDWGDKK 83 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~~d~--~i~iw~~~~~~~~~~ 83 (1637)
.....++|+|+|+++++...++.|++||..++.. ..... ++|+|+++.|+++..++ .|.+|+...++.. .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-T 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-E
Confidence 3567999999999888888788999999987652 22233 99999999999888766 7888887664321 1
Q ss_pred eEeeccC-CCCCEEEEEEcCC-CCEEEEeCCCcEEEEEcCCCceeee-----cccCCcE--EEEEEecC-CCeEEEEeCC
Q psy12802 84 VICNKFI-QQCPVTTMVWLAD-GPIIYGQSDGKIKAAHVKANKTQTL-----YASNSFV--VALCLNVR-GAGVLSGHAD 153 (1637)
Q Consensus 84 ~~~~~~~-~~~~v~~v~~s~~-~~l~~~~~d~~v~vwd~~~~~~~~~-----~~~~~~v--~~l~~s~~-g~~l~s~~~d 153 (1637)
.+..... ....+.+++++|+ +.++++..++.|+.||..++....+ .++...- ..++|+|+ +..+++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 2211112 4566788999994 5566677788999999998876433 2222222 39999995 5556666668
Q ss_pred CcEEEEEecCCCCcccccccccccC---------------CCCcEEEEecCC--eEEEEe-cCCeEEEEe-CCCceeEEe
Q psy12802 154 GSIVRYYVTEDASNFDQQQGRVVQH---------------PVPPYALSWPAG--YILAAG-SDRIVTIYE-SDGRVHRIF 214 (1637)
Q Consensus 154 g~i~iwd~~~~~~g~~~~~~~~~~~---------------~~~v~~~~~~~~--~l~~~~-~d~~i~iwd-~~~~~~~~~ 214 (1637)
+.|+.|+... . ...+.++ -..+..++++|+ .+++-+ .++.|+.|| .+|.. .++
T Consensus 289 ~~I~~~~~~g------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~ 360 (409)
T 3hrp_A 289 SSVYKITPDG------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV 360 (409)
T ss_dssp TEEEEECTTC------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE
T ss_pred CEEEEEecCC------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE
Confidence 8999998653 2 2222222 245889999884 455555 688999999 77764 444
Q ss_pred eccCC-C---------CCCccEEEEEECCCCCEEEEEecCc-EEEEEe
Q psy12802 215 DYTAP-H---------YKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 251 (1637)
Q Consensus 215 ~~~~~-~---------~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~ 251 (1637)
..... . ..-.....++++|+|.++++-..++ |+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 33210 0 0124588999999987777766666 766553
No 290
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.07 E-value=4.5e-09 Score=115.15 Aligned_cols=202 Identities=10% Similarity=-0.045 Sum_probs=140.6
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
+.....+..+|..+...|++++|+.+|.++... .|+ .+.++..+|..|...|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~-~~~~~~~l~~~~~~~~~~~ 59 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS------------------------DPK-NELAWLVRAEIYQYLKVND 59 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------------------------Ccc-chHHHHHHHHHHHHcCChH
Confidence 445556677888888888888888887664221 333 5667888888888888888
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHhCCchHHHHHHH
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEE-NKFKEAERLYLIIGEPDLAISMFK 1113 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~y~~~~~~~~ai~~~~ 1113 (1637)
+|+++|.++... .+....++..+|..+... |++++|+..|.++..
T Consensus 60 ~A~~~~~~a~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--------- 105 (225)
T 2vq2_A 60 KAQESFRQALSI-------------------------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA--------- 105 (225)
T ss_dssp HHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHh-------------------------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---------
Confidence 888888765321 133456778889999999 999888888665321
Q ss_pred hcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchH
Q psy12802 1114 NQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVE 1193 (1637)
Q Consensus 1114 ~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~ 1193 (1637)
....+....++..+|..+...|++++|+.+|.++ +-..+.+..++.
T Consensus 106 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------~~~~~~~~~~~~ 151 (225)
T 2vq2_A 106 -------------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS---------------------LAAQPQFPPAFK 151 (225)
T ss_dssp -------------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHSTTCHHHHH
T ss_pred -------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCchHHH
Confidence 0011334577888999999999999999999887 222333445667
Q ss_pred HHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy12802 1194 PVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKS-KLEEVHYKYALVLEDNGQFNEAETQFIK 1272 (1637)
Q Consensus 1194 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 1272 (1637)
.++..+...|++++|++.|.+.. + ..+ ..+..+..++..+...|++++|...+..
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~-------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQ-------------------S-----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-------------------H-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-------------------H-----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 77777777777777777775541 1 123 5566677777788888888888877766
Q ss_pred c
Q psy12802 1273 A 1273 (1637)
Q Consensus 1273 a 1273 (1637)
+
T Consensus 208 ~ 208 (225)
T 2vq2_A 208 L 208 (225)
T ss_dssp H
T ss_pred H
Confidence 5
No 291
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.06 E-value=1e-08 Score=114.75 Aligned_cols=206 Identities=13% Similarity=0.041 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHH
Q psy12802 1073 GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQ 1152 (1637)
Q Consensus 1073 ~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1152 (1637)
...+..+..+|..+...|++++|+..|.++- + ..+ ....++..+|..+...|++++
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-------------------~----~~~-~~~~~~~~la~~~~~~~~~~~ 89 (252)
T 2ho1_A 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKAL-------------------E----IDP-SSADAHAALAVVFQTEMEPKL 89 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------h----cCC-ChHHHHHHHHHHHHHcCCHHH
Confidence 3347888999999999999999988866531 1 122 235788999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChH
Q psy12802 1153 AEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFD 1232 (1637)
Q Consensus 1153 A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~ 1232 (1637)
|+.+|.++ +.....+..++..++..+...|++++|+++|.++..
T Consensus 90 A~~~~~~a---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------- 133 (252)
T 2ho1_A 90 ADEEYRKA---------------------LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--------------- 133 (252)
T ss_dssp HHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHH---------------------HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---------------
Confidence 99999888 222233444566677777777777777777655411
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhH
Q psy12802 1233 FAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQS 1312 (1637)
Q Consensus 1233 ~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a 1312 (1637)
....+..+.++..+|..+...|++++|+..|.++ +. ..|. .+.++..+|
T Consensus 134 -------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------~~-----------------~~~~-~~~~~~~la 182 (252)
T 2ho1_A 134 -------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS------LR-----------------LNRN-QPSVALEMA 182 (252)
T ss_dssp -------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HH-----------------HCSC-CHHHHHHHH
T ss_pred -------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH------Hh-----------------cCcc-cHHHHHHHH
Confidence 0124556788899999999999999999998887 22 2344 467788889
Q ss_pred HHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHH
Q psy12802 1313 KCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWE 1392 (1637)
Q Consensus 1313 ~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 1392 (1637)
..+...|++++|+..|.++ + +..| .....+..++..+.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~-------------------~----~~~~-------------------~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLF-------------------A----QGGG-------------------QNARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------------------H----TTSC-------------------CCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-------------------H----HhCc-------------------CcHHHHHHHHHHHH
Confidence 9898888888888766443 1 1122 22334788999999
Q ss_pred HcCCHHHHHHHHHhcCCcc
Q psy12802 1393 QNGEFYNAVECYLKIKNVD 1411 (1637)
Q Consensus 1393 ~~g~~~~A~~~~~~~~~~~ 1411 (1637)
..|++++|+.++.++....
T Consensus 221 ~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 221 VFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHHHC
Confidence 9999999999999876433
No 292
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=4.6e-09 Score=136.18 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=150.5
Q ss_pred cccceEEEEECCCCCeEEEEEC-----CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC-----
Q psy12802 45 KSYVVKGLAFSPDSTKLAVAQS-----DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG----- 113 (1637)
Q Consensus 45 h~~~V~~~~~spd~~~la~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~----- 113 (1637)
+...+.+++|||||++||.+.+ ...|++||+.++. .+... .+.....+++|+ ||+ |+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~----~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ----PLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS----EEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC----CCccc-cCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 5668999999999999995432 2579999999852 11110 011112567899 999 88887764
Q ss_pred --------cEEEEEcCCCce--eeec---c-cCCcEEEEEEecCCCeEEEEeC----CCcEEEEEecCCCCccccccccc
Q psy12802 114 --------KIKAAHVKANKT--QTLY---A-SNSFVVALCLNVRGAGVLSGHA----DGSIVRYYVTEDASNFDQQQGRV 175 (1637)
Q Consensus 114 --------~v~vwd~~~~~~--~~~~---~-~~~~v~~l~~s~~g~~l~s~~~----dg~i~iwd~~~~~~g~~~~~~~~ 175 (1637)
.|++|++.++.. ..+. . |...+.++.|||||++|+.... ++.|+++|+.+.. .....+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~----~~~~~l 276 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN----APLLTV 276 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT----CCCEEE
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC----CceEEE
Confidence 399999988764 2332 3 4456889999999998765543 2488999987642 234555
Q ss_pred ccCCCCcEEEEec-CCeEEEEec----CCeEEEEe-CCCce--eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--
Q psy12802 176 VQHPVPPYALSWP-AGYILAAGS----DRIVTIYE-SDGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-- 245 (1637)
Q Consensus 176 ~~~~~~v~~~~~~-~~~l~~~~~----d~~i~iwd-~~~~~--~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-- 245 (1637)
..+.........+ .+.++..+. .+.|..+| .++.. .+.+..+ ...+. .|+|+|+.|+....++
T Consensus 277 ~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-----~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 277 QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-----RQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-----CSSCE--EEEEETTEEEEEEEETTE
T ss_pred eCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-----CCCEE--EEEEECCEEEEEEEECCe
Confidence 5666666554222 345544433 36788888 44433 3455432 22333 8999999887776544
Q ss_pred --EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecC----CcEEEEEccccc
Q psy12802 246 --IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKR 302 (1637)
Q Consensus 246 --i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d----g~v~iwd~~~~~ 302 (1637)
|++|+++.... ....+...+.+..+.++|+++.++....+ +++..||+.+++
T Consensus 350 ~~l~~~d~~g~~~-----~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 350 ARVEQFDYEGKRV-----REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEECTTSCEE-----EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eEEEEEECCCCee-----EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 66776653211 01122344567788889998877665544 788899886553
No 293
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=9.4e-09 Score=117.24 Aligned_cols=233 Identities=13% Similarity=0.074 Sum_probs=147.5
Q ss_pred HHHcCCHHHHHHHHHHhCCHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCC
Q psy12802 864 YEKEGDHQTALNYYLKANFTSKACNLVQNE--PYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKV 941 (1637)
Q Consensus 864 ~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~ 941 (1637)
....|++++|+.+|.++ ..++... ...+.....+..++..+...|++++|..+|+
T Consensus 11 ~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------------- 67 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQA------LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN----------------- 67 (283)
T ss_dssp --CCSCSSSHHHHHHHH------HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred cCCCCCHHHHHHHHHHH------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH-----------------
Confidence 44567888888888777 3333221 1112344555666666666666666555543
Q ss_pred hHHHHHHHHHh---CCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhc---cccc
Q psy12802 942 YDKCIDLTRKI---NPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVIT---NKQD 1015 (1637)
Q Consensus 942 ~~~A~~l~~~~---~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~---~~~~ 1015 (1637)
+|+++.+.. .++.....+..+|.++...|++++|+.+|.++. .+.+... .|.
T Consensus 68 --~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------~~~~~~~~~~~~~- 125 (283)
T 3edt_B 68 --DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-------------------EIREKVLGKFHPD- 125 (283)
T ss_dssp --HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------------------HHHHHHHCTTCHH-
T ss_pred --HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------HHHHHHcCCCChH-
Confidence 455555443 234456677889999999999999999987653 2333321 233
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhh--cChhhHHHHHHHHHHHHHHcCCHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQH--LNVGEIKATFIQKCKQLEEENKFK 1093 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~ 1093 (1637)
...++..+|..|...|++++|+.+|.++.. +.+.. .+.+....++..+|.+|..+|+++
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALE-------------------IYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 677899999999999999999999877533 32222 124566788999999999999999
Q ss_pred HHHHHHHHhCCchHHH-----------------HHHH------hcCCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHcc
Q psy12802 1094 EAERLYLIIGEPDLAI-----------------SMFK------NQRQYENMIKLVRNYHP--DLLDTTLLHLAQECEESK 1148 (1637)
Q Consensus 1094 ~A~~~y~~~~~~~~ai-----------------~~~~------~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g 1148 (1637)
+|+.+|.++....... ..+. ....+..+...+....+ +....++..+|..|...|
T Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999988853321110 0111 12224444444444333 334568889999999999
Q ss_pred CHHHHHHHHHHc
Q psy12802 1149 NYKQAEKYYLDC 1160 (1637)
Q Consensus 1149 ~~~~A~~~y~~a 1160 (1637)
++++|+.+|.++
T Consensus 267 ~~~~A~~~~~~a 278 (283)
T 3edt_B 267 KLEAAHTLEDCA 278 (283)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999887
No 294
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.04 E-value=2.4e-09 Score=124.06 Aligned_cols=174 Identities=11% Similarity=0.107 Sum_probs=129.4
Q ss_pred CCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc---------e--eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEE
Q psy12802 93 CPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK---------T--QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYY 160 (1637)
Q Consensus 93 ~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~---------~--~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd 160 (1637)
.+++.+++++... +++|+.++ +.+|+++... . .....+.. |..++| |++.|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 3689999999999 77777774 6679976443 1 23345666 999999 99999999 889999999
Q ss_pred ecCCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEE
Q psy12802 161 VTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV 239 (1637)
Q Consensus 161 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 239 (1637)
+.+... ......|..++.++.+.+..+++++.||.|.+|| .++.... +. ..|++++|||+| ++
T Consensus 113 v~sl~~-----~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~~--------~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 113 LEELSE-----FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-LA--------QNVTSFDVTNSQ--LA 176 (388)
T ss_dssp SSSTTC-----EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-EE--------ESEEEEEECSSE--EE
T ss_pred chhhhc-----cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-cc--------CCceEEEEcCCc--eE
Confidence 987532 2345567778888888766699999999999999 5666543 22 269999999999 67
Q ss_pred EEecCc-EEEEEeCCCCC--ccccCCCcc----cCCCcceeEEEEcCCCCEEEEE
Q psy12802 240 VGSYDN-IKLFAWSPSKS--VWEEQPNKT----IPNLYTISALSWKRDGSRIACG 287 (1637)
Q Consensus 240 ~~~~d~-i~i~~~~~~~~--~~~~~~~~~----~~~~~~i~~l~~spdg~~l~~~ 287 (1637)
+|..|+ +++|+.+.... .-....+.. ..+...|.++.|.+++.++++-
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 788888 99998776542 111111111 1356899999999999888753
No 295
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=3.1e-08 Score=114.10 Aligned_cols=139 Identities=9% Similarity=0.051 Sum_probs=91.1
Q ss_pred HHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCC-CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHcc
Q psy12802 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINP-KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAK 998 (1637)
Q Consensus 920 ~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~-~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~ 998 (1637)
+.+|..+|++++|+.+|. +|+++...... ......+..+|.+|.. |++++|+.+|.++.
T Consensus 83 g~~~~~~g~~~~A~~~~~------~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al------------- 142 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIE------KASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA------------- 142 (307)
T ss_dssp HHHHHHTTCGGGGHHHHH------HHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-------------
T ss_pred HHHHHhCCCHHHHHHHHH------HHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-------------
Confidence 344444455555555444 44444443221 2233456688999988 99999999986642
Q ss_pred CHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHH
Q psy12802 999 QWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKAT 1078 (1637)
Q Consensus 999 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 1078 (1637)
++.+....+.....++..+|.+|...|++++|+.+|.++.. +..+..........
T Consensus 143 ------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 143 ------AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS-------------------MYKEMENYPTCYKK 197 (307)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHHTTCHHHHHHH
T ss_pred ------HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHcCChhHHHHH
Confidence 23332222222456799999999999999999999887543 22222222344567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhC
Q psy12802 1079 FIQKCKQLEEENKFKEAERLYLIIG 1103 (1637)
Q Consensus 1079 ~~~~a~~~~~~g~~~~A~~~y~~~~ 1103 (1637)
+..+|..+..+|++++|+..|.++.
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8889999999999999999988754
No 296
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.03 E-value=1.7e-09 Score=120.26 Aligned_cols=198 Identities=17% Similarity=0.162 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+..+..+|..+...|++++|+.+|.++... .+....++..+|..+...|++++|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------------------------~~~~~~~~~~la~~~~~~~~~~~A 76 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-------------------------NKEDAIPYINFANLLSSVNELERA 76 (243)
T ss_dssp --------------------CCTTHHHHHTT-------------------------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------------------------CcccHHHHHHHHHHHHHcCCHHHH
Confidence 4556888888888888888888888776432 234467888999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCC
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNL 1175 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~ 1175 (1637)
+..|.++- + ..+ ....++..+|..+...|++++|+.+|.++
T Consensus 77 ~~~~~~~~-------------------~----~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~--------------- 117 (243)
T 2q7f_A 77 LAFYDKAL-------------------E----LDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKA--------------- 117 (243)
T ss_dssp HHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHH-------------------H----cCC-cchHHHHHHHHHHHHhccHHHHHHHHHHH---------------
Confidence 98876531 1 122 23578899999999999999999999988
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHH
Q psy12802 1176 WEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYAL 1255 (1637)
Q Consensus 1176 ~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~ 1255 (1637)
+.....+..++..++..+...|++++|++.|.++. ...+..+.++..+|.
T Consensus 118 ------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 118 ------LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV------------------------ELNENDTEARFQFGM 167 (243)
T ss_dssp ------HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHH
T ss_pred ------HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH------------------------HhCCccHHHHHHHHH
Confidence 22333344556677777777777777777775541 113456778899999
Q ss_pred HHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1256 VLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1256 ~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
.+...|++++|+..|.++ +. ..|. .+.++..++..+...|++++|+..|.++
T Consensus 168 ~~~~~~~~~~A~~~~~~~------~~-----------------~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAV------TE-----------------QDPG-HADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHTCCHHHHHHHHHH------HH-----------------HCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH------HH-----------------hCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999998887 22 2344 4678899999999999999998877553
No 297
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.01 E-value=3.7e-08 Score=117.87 Aligned_cols=242 Identities=11% Similarity=0.014 Sum_probs=155.6
Q ss_pred cceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC--cEEEEEcCCC
Q psy12802 47 YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG--KIKAAHVKAN 123 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~--~v~vwd~~~~ 123 (1637)
....+++|+|+++.+++...++.|++||..++ .+......... .. ++|+|+++ ++++..++ .|.+|+..++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g----~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN----KVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT----EEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC----EEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 36889999999997777777799999999864 22222112222 23 89999999 77777655 7999998876
Q ss_pred ce-eee----cccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccc--cccCCC-CcE-EEEecC--Ce-
Q psy12802 124 KT-QTL----YASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGR--VVQHPV-PPY-ALSWPA--GY- 191 (1637)
Q Consensus 124 ~~-~~~----~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~--~~~~~~-~v~-~~~~~~--~~- 191 (1637)
.. ..+ ......+.+++++|++..|+++..++.|+.||...... ..... ..++.. .+. .++|+| +.
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---EEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---EEEecccccCCCCCCccccEEEeCCCCEE
Confidence 54 333 22556788999999555566677788999999875321 11100 112222 234 999998 34
Q ss_pred EEEEecCCeEEEEeCCCceeEEeeccC-CCC---------CCccEEEEEECCCCCEEEEEe-cCc-EEEEEeCCCCCcc-
Q psy12802 192 ILAAGSDRIVTIYESDGRVHRIFDYTA-PHY---------KEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPSKSVW- 258 (1637)
Q Consensus 192 l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~---------~~~~i~~~~~sp~g~~l~~~~-~d~-i~i~~~~~~~~~~- 258 (1637)
+++...++.|..|+.++... .+.... ... .-.....++++|+|+++++-+ .++ |+.|+...+....
T Consensus 282 yv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp EEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred EEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 44455678999999777733 333221 000 023478999999999766666 555 8888854432110
Q ss_pred ccC--------CCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEc
Q psy12802 259 EEQ--------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 298 (1637)
Q Consensus 259 ~~~--------~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~ 298 (1637)
... ..........+..++++|+|..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 000 0000112346889999999888888888888887764
No 298
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=2.4e-05 Score=103.15 Aligned_cols=405 Identities=10% Similarity=0.028 Sum_probs=233.5
Q ss_pred CceeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEECCCCCeEEEEECCCeEEEEEcCC
Q psy12802 12 NVLQDDVFNL--DIVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77 (1637)
Q Consensus 12 ~~i~~~~~sp--dg~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~ 77 (1637)
..|.++...+ +|.+.+ ++.++.|..+|..+++ ....|.++...++|...+ ++.++-|..||..+
T Consensus 115 ~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~ 192 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLWV-CTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLND 192 (781)
T ss_dssp SCEEEEEECSSTTSEEEE-EESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTT
T ss_pred CcceEEEecCccCCCEEE-EECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCC
Confidence 4688888888 776555 4434468888865443 134588888888776554 66665688888766
Q ss_pred CCCCceeEeec-------cCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeecc--------cCCcEEEEEEec
Q psy12802 78 DWGDKKVICNK-------FIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYA--------SNSFVVALCLNV 142 (1637)
Q Consensus 78 ~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~l~~s~ 142 (1637)
+ +..... ......|.++...++|.+..|+.+ -+.+||..+++...+.. ....|.++...+
T Consensus 193 ~----~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 267 (781)
T 3v9f_A 193 K----SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK 267 (781)
T ss_dssp T----EEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT
T ss_pred C----ceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC
Confidence 3 211110 012357999998888886666666 59999988876633321 245699999888
Q ss_pred CCCeEEEEeCCCcEEEEEecCCCCcccccccc------------cccCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCc
Q psy12802 143 RGAGVLSGHADGSIVRYYVTEDASNFDQQQGR------------VVQHPVPPYALSWPA-GYILAAGSDRIVTIYESDGR 209 (1637)
Q Consensus 143 ~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~------------~~~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 209 (1637)
+|. |..|+..+-|.++|...... ..... -.-....|.++...+ +.+..|+.++.|..++....
T Consensus 268 ~g~-lWigt~~~Gl~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 268 DNK-LWIATELNGIMILDLQQNQF---LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPP 343 (781)
T ss_dssp TSE-EEEEESSSCEEEEETTCC------------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCC
T ss_pred CCC-EEEEeCCCCeEEECCCCCee---eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCC
Confidence 886 44566656688888765321 11110 011345688888876 58888998889999995544
Q ss_pred eeEEeecc-----CCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEE
Q psy12802 210 VHRIFDYT-----APHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI 284 (1637)
Q Consensus 210 ~~~~~~~~-----~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 284 (1637)
....+... ........|.++...++|.+.+.....++..|+........ -..........|.++...++|..
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~l- 420 (781)
T 3v9f_A 344 TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY--NKENRELLSNSVLCSLKDSEGNL- 420 (781)
T ss_dssp SCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC--C-----CCCSBEEEEEECTTSCE-
T ss_pred cceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE--ccCCCCCCCcceEEEEECCCCCE-
Confidence 44444321 01023456999999998875544335558888765322111 00001112357889988888874
Q ss_pred EEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEE
Q psy12802 285 ACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLL 364 (1637)
Q Consensus 285 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~ 364 (1637)
.+|+.++.+..++..+++...- ..+ ......|.++...+++++.+++. +.+.
T Consensus 421 Wigt~~~Gl~~~~~~~~~~~~~-------~~~--------------------~~~~~~v~~i~~d~~g~lwigt~-~Gl~ 472 (781)
T 3v9f_A 421 WFGTYLGNISYYNTRLKKFQII-------ELE--------------------KNELLDVRVFYEDKNKKIWIGTH-AGVF 472 (781)
T ss_dssp EEEETTEEEEEECSSSCEEEEC-------CST--------------------TTCCCCEEEEEECTTSEEEEEET-TEEE
T ss_pred EEEeccCCEEEEcCCCCcEEEe-------ccC--------------------CCCCCeEEEEEECCCCCEEEEEC-CceE
Confidence 4477777788888754432110 000 01123678888888888888866 7899
Q ss_pred EeeccccceeeeecCCCCCCceeEecCceEEEEEeCCccEEEEecCCceeeeeeeeeeccCCCCcccccCCCccCCCcce
Q psy12802 365 LGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYT 444 (1637)
Q Consensus 365 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~ 444 (1637)
.+|..+++.....-.... . ...+.+.++..++.+..-+.....++. .+++....+..-....--....
T Consensus 473 ~~~~~~~~~~~~~~~~~~---~-~~~~~i~~i~~d~~g~lWigt~~~Gl~--------~~~~~~~~~~~~~~~~~l~~~~ 540 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNS---Q-LLENFVRSIAQDSEGRFWIGTFGGGVG--------IYTPDMQLVRKFNQYEGFCSNT 540 (781)
T ss_dssp EEESSSSSCCEEECTTTS---S-CSCSCEEEEEECTTCCEEEEESSSCEE--------EECTTCCEEEEECTTTTCSCSC
T ss_pred EEeCCCCeEEecccCccc---c-cccceeEEEEEcCCCCEEEEEcCCCEE--------EEeCCCCeEEEccCCCCCCCCe
Confidence 999887766544321110 0 112445566666633322222222222 2333322221111011112456
Q ss_pred eeeeeeccCCCeEEeeccCCcEEEehh
Q psy12802 445 ISALSWKRDGSRIACGGLCGSVELFES 471 (1637)
Q Consensus 445 I~~l~~s~dg~~la~g~~dg~v~lw~~ 471 (1637)
|.++...++|...+. +..|.+..||.
T Consensus 541 i~~i~~d~~g~lWi~-T~~Glv~~~d~ 566 (781)
T 3v9f_A 541 INQIYRSSKGQMWLA-TGEGLVCFPSA 566 (781)
T ss_dssp EEEEEECTTSCEEEE-ETTEEEEESCT
T ss_pred eEEEEECCCCCEEEE-ECCCceEEECC
Confidence 888998888875544 44676456664
No 299
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.01 E-value=2.6e-09 Score=123.65 Aligned_cols=178 Identities=8% Similarity=-0.017 Sum_probs=132.1
Q ss_pred cceEEEEECCCCCeEEEEECCCeEEEEEcCCCC-------CCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEE
Q psy12802 47 YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW-------GDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAA 118 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vw 118 (1637)
..++.+++++....+++|+.++ +.+|++.... ...... ....+.+ |+.++| |+. ++++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3789999999999999999875 5569865421 000110 1123556 999999 888 7777 88999999
Q ss_pred EcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEec
Q psy12802 119 HVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGS 197 (1637)
Q Consensus 119 d~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 197 (1637)
|+.+... .....|...+.++.+.+. .+++++.||+|.+||+.+. ... .+...|.|++|||+.++.|..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-----~~~----~~~~~Vs~v~WSpkG~~vg~~ 180 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-----STK----QLAQNVTSFDVTNSQLAVLLK 180 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-----CEE----EEEESEEEEEECSSEEEEEET
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-----ccc----cccCCceEEEEcCCceEEEEc
Confidence 9987766 667778888888877654 3999999999999999863 221 255689999999977899999
Q ss_pred CCeEEEEeCCCce---eEEeeccCC----CCCCccEEEEEECCCCCEEEEE
Q psy12802 198 DRIVTIYESDGRV---HRIFDYTAP----HYKEREFTVACSSPSGQAVVVG 241 (1637)
Q Consensus 198 d~~i~iwd~~~~~---~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~~~ 241 (1637)
||++++|+.++.. ..++..+.. ..+...|.+++|.+++.++++-
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999965555 445532110 0256789999999999888753
No 300
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.99 E-value=1.2e-08 Score=111.56 Aligned_cols=200 Identities=13% Similarity=-0.036 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+.++..+|..+...|++++|+++|.++.... +....++..+|..+...|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~A 61 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------------------------PKNELAWLVRAEIYQYLKVNDKA 61 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------------------------ccchHHHHHHHHHHHHcCChHHH
Confidence 67788999999999999999988887753211 33466788899999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHc-cCHHHHHHHHHHccCHHHHHHHHHhcC
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEES-KNYKQAEKYYLDCNEWKLAIKMYRSLN 1174 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~y~~a~~~~~~~~~y~~~g 1174 (1637)
+++|.++. + ..| ....++..+|..+... |++++|+.+|.++-. .+
T Consensus 62 ~~~~~~a~-------------------~----~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----------~~ 107 (225)
T 2vq2_A 62 QESFRQAL-------------------S----IKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALA----------DP 107 (225)
T ss_dssp HHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----------ST
T ss_pred HHHHHHHH-------------------H----hCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----------Cc
Confidence 88866531 1 122 2256788899999999 999999999988722 00
Q ss_pred CHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHH
Q psy12802 1175 LWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYA 1254 (1637)
Q Consensus 1175 ~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a 1254 (1637)
........+..++..+...|++++|++.|.++. ...+..+..+..+|
T Consensus 108 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~la 154 (225)
T 2vq2_A 108 ---------TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL------------------------AAQPQFPPAFKELA 154 (225)
T ss_dssp ---------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHSTTCHHHHHHHH
T ss_pred ---------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCchHHHHHH
Confidence 011122355677777777777777777775541 11345578889999
Q ss_pred HHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHH
Q psy12802 1255 LVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLR 1330 (1637)
Q Consensus 1255 ~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 1330 (1637)
..+...|++++|+..|.++ +. ..|...+..+...+..+...|++++|..++..
T Consensus 155 ~~~~~~~~~~~A~~~~~~~------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKY------QS-----------------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHH------HH-----------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH------HH-----------------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999988887 22 23423456667777777777888777766544
No 301
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.99 E-value=3.4e-08 Score=116.15 Aligned_cols=265 Identities=8% Similarity=0.036 Sum_probs=161.7
Q ss_pred cCCCCEEEEEeCC-----CeEEEEEcCCCCc------ccceEEEEECCCCCeEEEEE----------CCCeEEEEEcCCC
Q psy12802 20 NLDIVRLRSEGNV-----AGIWAWRGQNGRK------SYVVKGLAFSPDSTKLAVAQ----------SDNIIFIYKLGDD 78 (1637)
Q Consensus 20 spdg~~la~~~~d-----~~i~vwd~~~~~h------~~~V~~~~~spd~~~la~~~----------~d~~i~iw~~~~~ 78 (1637)
.||++++.+.... +.|.++|..+++- ...- .+++||||++|.++. .++.|.++|..+.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 3677776665442 6899999988762 1222 899999999998876 3678999999885
Q ss_pred CCCceeEeecc-C------CCCCEEEEEEcCCCC-EEEEeC--CCcEEEEEcCCCce-eeecccCCcEEEEEEecCC-Ce
Q psy12802 79 WGDKKVICNKF-I------QQCPVTTMVWLADGP-IIYGQS--DGKIKAAHVKANKT-QTLYASNSFVVALCLNVRG-AG 146 (1637)
Q Consensus 79 ~~~~~~~~~~~-~------~~~~v~~v~~s~~~~-l~~~~~--d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g-~~ 146 (1637)
+.+.... + .......+.|+|||+ ++++.. ++.|.+.|+.+++. .++.- .+. ....|+| ..
T Consensus 160 ----~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-~g~---~~~~p~g~~~ 231 (426)
T 3c75_H 160 ----LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-PDC---YHIFPASPTV 231 (426)
T ss_dssp ----CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CSE---EEEEEEETTE
T ss_pred ----cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-CCc---eeeccCCCcE
Confidence 2222211 1 122345789999999 666553 67899999999987 44432 111 2333433 44
Q ss_pred EEEEeCCCcEEEEEecCCCCccccccc----ccccCCCCc-EEEEecC--CeEEEEecCCeEEEEeCCCceeE---Eeec
Q psy12802 147 VLSGHADGSIVRYYVTEDASNFDQQQG----RVVQHPVPP-YALSWPA--GYILAAGSDRIVTIYESDGRVHR---IFDY 216 (1637)
Q Consensus 147 l~s~~~dg~i~iwd~~~~~~g~~~~~~----~~~~~~~~v-~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~---~~~~ 216 (1637)
+++.+.||.+.+.+..+. +... .+.....++ ..+.|++ +.++..+..+.+.+.|..+..+. .+..
T Consensus 232 ~v~~~~dG~~~~V~~~~~-----~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADG-----ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp EEEEETTSSEEEEECCTT-----CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred EEEEcCCCCEEEEECCCC-----cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 555666777666666321 1111 111111111 1234554 46666667889999994433222 1211
Q ss_pred cCCCC-----CCccEEEEEECCCCCEEEEEec----------Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCC
Q psy12802 217 TAPHY-----KEREFTVACSSPSGQAVVVGSY----------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD 280 (1637)
Q Consensus 217 ~~~~~-----~~~~i~~~~~sp~g~~l~~~~~----------d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 280 (1637)
..... .......++++|+|+.+.+... .+ |.++|..+.+.. ..+.-......+.|+||
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv------~~I~vg~~P~gia~spD 380 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI------NKIELGHEIDSINVSQD 380 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE------EEEEEEEEECEEEECCS
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE------EEEECCCCcCeEEEccC
Confidence 00000 0111223689999988777642 23 888887766542 22222235889999999
Q ss_pred CC-EEEEEe-cCCcEEEEEcccccee
Q psy12802 281 GS-RIACGG-LCGSVELFESVLKRTI 304 (1637)
Q Consensus 281 g~-~l~~~~-~dg~v~iwd~~~~~~~ 304 (1637)
|+ ++++.. .++.|.++|..+++.+
T Consensus 381 g~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 381 AEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 99 888887 5999999999877654
No 302
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.95 E-value=1e-07 Score=109.25 Aligned_cols=223 Identities=12% Similarity=0.068 Sum_probs=143.7
Q ss_pred ceEEEEECCCCCeE-EEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCcee
Q psy12802 48 VVKGLAFSPDSTKL-AVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQ 126 (1637)
Q Consensus 48 ~V~~~~~spd~~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~ 126 (1637)
-.-+..|+|++..| ++...++.|..||..++ .... ......+.+++++|+|+++++. ++.|.+||.++++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----~~~~--~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----QVQR--VTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----CEEE--EECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----cEEE--EeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence 44588999976554 45567889999998874 1111 1245789999999999955555 567999999988774
Q ss_pred eeccc-----CCcEEEEEEecCCCeEEEEeCC---------CcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--
Q psy12802 127 TLYAS-----NSFVVALCLNVRGAGVLSGHAD---------GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-- 190 (1637)
Q Consensus 127 ~~~~~-----~~~v~~l~~s~~g~~l~s~~~d---------g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-- 190 (1637)
.+... ...+..++++|+|+.+++...+ ....+|.+...+ .. ..+..+...+..++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~-~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH----HV-KKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS----CE-EEEEEEESBEEEEEECTTSC
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC----CE-EEEeeccccccceEEcCCCC
Confidence 44322 2457899999999976654322 334566665421 22 223334456789999984
Q ss_pred eE-EEEecCCeEEEEe---CCCcee--EEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCC
Q psy12802 191 YI-LAAGSDRIVTIYE---SDGRVH--RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN 263 (1637)
Q Consensus 191 ~l-~~~~~d~~i~iwd---~~~~~~--~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~ 263 (1637)
.+ ++.+.++.|.+|| .+|... +.+... . .....+..++++++|++.++...++ |..|+..+++..-
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~----- 234 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-E-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ----- 234 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-C-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE-----
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-C-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE-----
Confidence 34 4556688999998 345432 112110 0 1234678899999998777766666 8888766444321
Q ss_pred cccCCCcceeEEEEc-CCCCEEEEEec
Q psy12802 264 KTIPNLYTISALSWK-RDGSRIACGGL 289 (1637)
Q Consensus 264 ~~~~~~~~i~~l~~s-pdg~~l~~~~~ 289 (1637)
....+...+++++|+ ||++.|.+++.
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 111123478999998 89887766554
No 303
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.95 E-value=3.3e-08 Score=114.06 Aligned_cols=219 Identities=10% Similarity=0.035 Sum_probs=137.3
Q ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcC--hhhHHHHHHHHHHHHHHc
Q psy12802 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLN--VGEIKATFIQKCKQLEEE 1089 (1637)
Q Consensus 1012 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 1089 (1637)
.|. .+.+|..+|..+...++. +.+.|++. ...+++++|..++++... .|....++..+|..+..+
T Consensus 46 ~p~-~~~~w~~~~~~~~~~~~~------l~~~g~~~------~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 46 LGH-HPDIWYEAAQYLEQSSKL------LAEKGDMN------NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHH------HHHTSCCH------HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred cCC-CHHHHHHHHHHHHHhchh------hhhccchh------hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455 788999999988754221 11111110 000111333333333222 355678899999999999
Q ss_pred CCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHH
Q psy12802 1090 NKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKM 1169 (1637)
Q Consensus 1090 g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~ 1169 (1637)
|++++|+..|.++-.. .|.....+|..+|..+...|++++|...|.++-.
T Consensus 113 ~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------- 162 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI-----------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE------- 162 (308)
T ss_dssp TCHHHHHHHHHHHHTS-----------------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHHhc-----------------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------
Confidence 9999999987774221 2222223899999999999999999999999822
Q ss_pred HHhcCCHHHHHHHHHhcCCccchHHHHHHHH-HhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHH
Q psy12802 1170 YRSLNLWEDAYRIALSNGGQEAVEPVVYLWA-KSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEE 1248 (1637)
Q Consensus 1170 y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~ 1248 (1637)
..+.....+...+.... ..|++++|.+.|.++ +++ .|..+.
T Consensus 163 --------------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a-------------------l~~-----~p~~~~ 204 (308)
T 2ond_A 163 --------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELG-------------------LKK-----YGDIPE 204 (308)
T ss_dssp --------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH-------------------HHH-----HTTCHH
T ss_pred --------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHh-----CCCcHH
Confidence 11111112221222211 135555555555433 111 355788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHH
Q psy12802 1249 VHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLL 1328 (1637)
Q Consensus 1249 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 1328 (1637)
++..++..+...|++++|...|.++ +... .+.|+....++...+.++...|++++|...+
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~a------l~~~--------------~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERV------LTSG--------------SLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH------HHSS--------------SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH------Hhcc--------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999987 2210 1244446788889999998899999888777
Q ss_pred HHh
Q psy12802 1329 LRA 1331 (1637)
Q Consensus 1329 ~~a 1331 (1637)
.++
T Consensus 265 ~~a 267 (308)
T 2ond_A 265 KRR 267 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 304
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.91 E-value=1.9e-07 Score=108.45 Aligned_cols=221 Identities=9% Similarity=0.025 Sum_probs=137.5
Q ss_pred eEEEEECCCCCeE-EEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceee
Q psy12802 49 VKGLAFSPDSTKL-AVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQT 127 (1637)
Q Consensus 49 V~~~~~spd~~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~ 127 (1637)
..++.|+|++..+ ++...++.|..||..++ +.... .....+.++.|+|+|+++.++.+ .|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----~~~~~--~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----RKTVH--ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----EEEEE--ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----cEEEE--ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEE
Confidence 4678899986554 45567889999998764 22111 23467999999999994444544 49999999888744
Q ss_pred eccc-----CCcEEEEEEecCCCeEEEEeCC----CcEEEEEecCCCCcccccccccccCCCCcEEEEecCC--eEEE-E
Q psy12802 128 LYAS-----NSFVVALCLNVRGAGVLSGHAD----GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILA-A 195 (1637)
Q Consensus 128 ~~~~-----~~~v~~l~~s~~g~~l~s~~~d----g~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~--~l~~-~ 195 (1637)
+... ...+.++.++|+|+.+++...+ +...+|.+.+ | .. ..+..+...+..++|+|+ .++. .
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~---g--~~-~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---G--KV-TKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---T--EE-EEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC---C--cE-EEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 4322 2358899999999976655422 2234444432 2 22 222233345778999984 4444 4
Q ss_pred ecCCeEEEEeC---CC-cee--EEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCC
Q psy12802 196 GSDRIVTIYES---DG-RVH--RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN 268 (1637)
Q Consensus 196 ~~d~~i~iwd~---~~-~~~--~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~ 268 (1637)
+.++.|.+||. +| ... ..+.... .....+..++++++|.+.++...++ |.+|+.+ +... ......
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~-----~~i~~~ 269 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHI-----ARYEVP 269 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEE-----EEEECS
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEE-----EEEECC
Confidence 55789999993 45 321 1221110 1234567899999998777765555 8888763 2211 011112
Q ss_pred CcceeEEEEc-CCCCEEEEEecC
Q psy12802 269 LYTISALSWK-RDGSRIACGGLC 290 (1637)
Q Consensus 269 ~~~i~~l~~s-pdg~~l~~~~~d 290 (1637)
...+++++|+ |++..|++++..
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCcEEEEEecCCCCEEEEEecC
Confidence 3468999998 888877655543
No 305
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.90 E-value=5.6e-07 Score=107.32 Aligned_cols=257 Identities=9% Similarity=0.101 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc----------------ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeE
Q psy12802 22 DIVRLRSEGNVAGIWAWRGQNGRK----------------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVI 85 (1637)
Q Consensus 22 dg~~la~~~~d~~i~vwd~~~~~h----------------~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~ 85 (1637)
++..+.+++.++.|..+|..+|+. ...+.+ ....++..+.+++.++.|..+|..++. ..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~----~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT----VA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC----EE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC----EE
Confidence 456677777788999999987762 112222 222346678888999999999998752 22
Q ss_pred eeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeecccCCcE------EEEEEecCCCeEEEEeCCCcEEEE
Q psy12802 86 CNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFV------VALCLNVRGAGVLSGHADGSIVRY 159 (1637)
Q Consensus 86 ~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v------~~l~~s~~g~~l~s~~~dg~i~iw 159 (1637)
-.............. .++.+++++.++.|..+|..+|+..........+ ...... +..+++++.++.|..+
T Consensus 127 W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 127 WQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 111111111111111 2445888889999999999999873222221111 111222 4567888889999999
Q ss_pred EecCCCCcccccccccccCCC-----------CcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEE
Q psy12802 160 YVTEDASNFDQQQGRVVQHPV-----------PPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFT 227 (1637)
Q Consensus 160 d~~~~~~g~~~~~~~~~~~~~-----------~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~ 227 (1637)
|..+. +.+........ .........+.+++++.++.+..+| .+|+.+...... ...
T Consensus 204 d~~tG-----~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~~~ 271 (376)
T 3q7m_A 204 LMEQG-----QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------SVN 271 (376)
T ss_dssp ETTTC-----CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------CEE
T ss_pred ECCCC-----cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------CCC
Confidence 98764 33322221100 0011122346888888999999999 789887665532 233
Q ss_pred EEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeee
Q psy12802 228 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 306 (1637)
Q Consensus 228 ~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~ 306 (1637)
.+.. ++..+.+++.++ +..+|..+++..|....... ..+..... .+..|++++.+|.|..+|..+++.++.
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH----RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT----SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC----CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3333 466777777776 99999988888785432111 11122222 256788899999999999988876554
No 306
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.88 E-value=1.2e-07 Score=111.28 Aligned_cols=229 Identities=8% Similarity=-0.081 Sum_probs=144.8
Q ss_pred CceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCC-------------cccceEEEEECCCCCeEEEEEC-----CCeEE
Q psy12802 12 NVLQDDVFNLDIVRLRSEG--NVAGIWAWRGQNGR-------------KSYVVKGLAFSPDSTKLAVAQS-----DNIIF 71 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~--~d~~i~vwd~~~~~-------------h~~~V~~~~~spd~~~la~~~~-----d~~i~ 71 (1637)
..+..++++|||+++++.. .++.++||.+.+++ +...+.+++|+|+|+..++-+. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 5789999999999998863 23323444432222 3457999999999876665433 57899
Q ss_pred EEEcCCCCCCceeEeec---cCCCCCEEEEEEcCCCC--EEEEe---CCCcEEEEEcCCCce-eeecccC----------
Q psy12802 72 IYKLGDDWGDKKVICNK---FIQQCPVTTMVWLADGP--IIYGQ---SDGKIKAAHVKANKT-QTLYASN---------- 132 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~---~~~~~~v~~v~~s~~~~--l~~~~---~d~~v~vwd~~~~~~-~~~~~~~---------- 132 (1637)
+||+.++.. .+.+... ..+...+..++++|++. +++.. .++.|.+||+.+++. ..+.+|.
T Consensus 97 ~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 97 AWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 999987511 1111110 12234568999998654 55555 678999999998876 3333221
Q ss_pred -------------------CcEEEEEEecCCCeEEEEeCCC-cEEEEEecCCCCc---cccccc--ccccCCCCcEEEEe
Q psy12802 133 -------------------SFVVALCLNVRGAGVLSGHADG-SIVRYYVTEDASN---FDQQQG--RVVQHPVPPYALSW 187 (1637)
Q Consensus 133 -------------------~~v~~l~~s~~g~~l~s~~~dg-~i~iwd~~~~~~g---~~~~~~--~~~~~~~~v~~~~~ 187 (1637)
..+..++|+|||+.|+++..++ .|..++......+ -..... ...++...+..+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 2368899999999988887766 4444443210000 000111 11234556778899
Q ss_pred cCC--eEEEEecCCeEEEEeC-CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc
Q psy12802 188 PAG--YILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN 245 (1637)
Q Consensus 188 ~~~--~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~ 245 (1637)
+++ .+++...++.|.+||. +|+....... +....+.+++|+|+|+++++.+..+
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~----~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRAYKLLVTD----EKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC----GGGSCEEEEEECTTSCEEEEECCGG
T ss_pred CCCCCEEEEccCCCeEEEEECCCCCEEEEEEC----CceecCCeeEECCCCcEEEEeCccc
Confidence 873 5566667889999997 8865433321 1234688999999998887776544
No 307
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=5e-08 Score=109.57 Aligned_cols=187 Identities=9% Similarity=0.000 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+..+..+|..+...|++++|+..|.++..... ..+..+.+++.+|..|..+|+|++|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------~~~~~~~a~~~lg~~~~~~~~~~~A 71 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR----------------------THEWAADAQFYLARAYYQNKEYLLA 71 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS----------------------CSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----------------------CCcchHHHHHHHHHHHHHhCcHHHH
Confidence 577889999999999999999999988754321 1233478899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhC-CCchHHHHHHHHHHHHH--------ccCHHHHHHHHHHccCHHHH
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYH-PDLLDTTLLHLAQECEE--------SKNYKQAEKYYLDCNEWKLA 1166 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~la~~~~~--------~g~~~~A~~~y~~a~~~~~~ 1166 (1637)
+..|.+. +.... .+....++..+|.++.. .|++++|+..|.++-.
T Consensus 72 ~~~~~~~----------------------l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---- 125 (261)
T 3qky_A 72 ASEYERF----------------------IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---- 125 (261)
T ss_dssp HHHHHHH----------------------HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHH----------------------HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH----
Confidence 9886652 22211 13446789999999999 9999999999998711
Q ss_pred HHHHHhcCCHHHHHHHHHhc--CCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCC
Q psy12802 1167 IKMYRSLNLWEDAYRIALSN--GGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKS 1244 (1637)
Q Consensus 1167 ~~~y~~~g~~~~A~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~ 1244 (1637)
.+-.......+....... .-......+|..+.+.|++++|+..|.++ +-.....+
T Consensus 126 --~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------------l~~~p~~~ 182 (261)
T 3qky_A 126 --RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV---------------------FDAYPDTP 182 (261)
T ss_dssp --HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTST
T ss_pred --HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH---------------------HHHCCCCc
Confidence 000000111111000000 00112356666677777776666666543 11111123
Q ss_pred CcHHHHHHHHHHHHhC----------CChHHHHHHHHHc
Q psy12802 1245 KLEEVHYKYALVLEDN----------GQFNEAETQFIKA 1273 (1637)
Q Consensus 1245 ~~~~~~~~~a~~~~~~----------g~~~~A~~~~~~a 1273 (1637)
..+++++.+|..|... |++++|+..|.++
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 3678999999999876 7778888888776
No 308
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=5.3e-08 Score=106.76 Aligned_cols=97 Identities=15% Similarity=0.065 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
.+..+..+|..+...|++++|+..|.++.... ++.....+..+|..+...|++++|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~A 61 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT------------------------NNQDSVTAYNCGVCADNIKKYKEA 61 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------------TTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc------------------------CCCCcHHHHHHHHHHHHhhcHHHH
Confidence 45689999999999999999999998864332 112346677799999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+..|.++- +.. +....++..+|..|...|++++|+..|.++
T Consensus 62 ~~~~~~al-----------------------~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 62 ADYFDIAI-----------------------KKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHHHHH-----------------------HTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------HhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 98876631 112 334678999999999999999999999998
No 309
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.85 E-value=1.2e-07 Score=109.12 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=139.2
Q ss_pred cceEEEEECCCCCe-EEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCc
Q psy12802 47 YVVKGLAFSPDSTK-LAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK 124 (1637)
Q Consensus 47 ~~V~~~~~spd~~~-la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~ 124 (1637)
....++.|+|+|+. +++...++.|..|+.... .... ..+...+.+++|+|+|+ +++...++.|.+|+.. ++
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~~~~---~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT---VDVL---LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC---EEEE---EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC---EEEE---eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 45678999999994 456667889999987421 2222 23456789999999999 5444456789999986 55
Q ss_pred eeeeccc-----CCcEEEEEEecCCCeEEE----EeC-------------CCcEEEEEecCCCCcccccccccccCCCCc
Q psy12802 125 TQTLYAS-----NSFVVALCLNVRGAGVLS----GHA-------------DGSIVRYYVTEDASNFDQQQGRVVQHPVPP 182 (1637)
Q Consensus 125 ~~~~~~~-----~~~v~~l~~s~~g~~l~s----~~~-------------dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v 182 (1637)
...+..+ ...+..++++|+|+..++ |+. .+.|..||..+. .. ..+. ....+
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-----~~-~~~~-~~~~p 190 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-----PL-QRMA-DLDHP 190 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-----CC-EEEE-EESSE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-----cE-EEEe-cCCCC
Confidence 5333222 234678999999998886 332 245666665442 22 2222 44567
Q ss_pred EEEEecCC--eEEEEecC------CeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCC
Q psy12802 183 YALSWPAG--YILAAGSD------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPS 254 (1637)
Q Consensus 183 ~~~~~~~~--~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~ 254 (1637)
..++|+|+ .++++... +.|.+|+..+..+........ .....+..++++++|+ |.+++.++|.+|+.+..
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~-lwv~~~~gv~~~~~~g~ 268 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGW-LWSSSGTGVCVFDSDGQ 268 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSC-EEECCSSEEEEECTTSC
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCC-EEEecCCcEEEECCCCC
Confidence 88999985 46665554 789999932221221111000 1122345688999999 44455666888776322
Q ss_pred CCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCc
Q psy12802 255 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 292 (1637)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 292 (1637)
. ...+.....+.+++|+|+++.|.+++.++.
T Consensus 269 -~------~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 269 -L------LGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -E------EEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred -E------EEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 1 111112225889999999998888877643
No 310
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=2.7e-08 Score=111.85 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCC
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKD 1032 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~ 1032 (1637)
+.........|..+...|+|++|+.+|.++... .|. ..+.++..+|.+|...|+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------------~p~~~~~~~a~~~lg~~~~~~~~ 67 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY------------------------GRTHEWAADAQFYLARAYYQNKE 67 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG------------------------CSCSTTHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------------CCCCcchHHHHHHHHHHHHHhCc
Confidence 444556668899999999999999998886443 333 127789999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHhCC
Q psy12802 1033 YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEE--------ENKFKEAERLYLIIGE 1104 (1637)
Q Consensus 1033 ~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~--------~g~~~~A~~~y~~~~~ 1104 (1637)
+++|+..|.++.... .+.+..+.+++.+|..+.. +|++++|+..|.+.-
T Consensus 68 ~~~A~~~~~~~l~~~----------------------p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l- 124 (261)
T 3qky_A 68 YLLAASEYERFIQIY----------------------QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI- 124 (261)
T ss_dssp HHHHHHHHHHHHHHC----------------------TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHC----------------------CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH-
Confidence 999999988753321 1224557889999999999 999999999987731
Q ss_pred chHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1105 PDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1105 ~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
..+-.......+...+.... ......+..+|..|...|+|++|+..|.++
T Consensus 125 -----~~~p~~~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 125 -----DRYPNHELVDDATQKIRELR-AKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp -----HHCTTCTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHCcCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 11111111222222221111 122445788999999999999999999887
No 311
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.83 E-value=1e-07 Score=110.01 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=144.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCH-------HHHHHHHHhCCChH
Q psy12802 871 QTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNEN-------EKALECYRKGKVYD 943 (1637)
Q Consensus 871 ~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~-------~~a~~~y~~~~~~~ 943 (1637)
..|+..|.++-... |.+.+++..++..+...+. .+.+.|++ ++|+..|.
T Consensus 33 ~~a~~~~~~al~~~------------p~~~~~w~~~~~~~~~~~~------~l~~~g~~~~~~~~~~~A~~~~~------ 88 (308)
T 2ond_A 33 KRVMFAYEQCLLVL------------GHHPDIWYEAAQYLEQSSK------LLAEKGDMNNAKLFSDEAANIYE------ 88 (308)
T ss_dssp HHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHHH------HHHHTSCCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHhch------hhhhccchhhcccchHHHHHHHH------
Confidence 56777777762222 5788888888877754321 12233443 44444443
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHH-HHHH
Q psy12802 944 KCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQ-HVKT 1022 (1637)
Q Consensus 944 ~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~-~~~~ 1022 (1637)
+|++. .+|....++..+|.++...|++++|..+|+++... +|. .+. +|..
T Consensus 89 rAl~~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~~ 139 (308)
T 2ond_A 89 RAIST----LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI------------------------EDI-DPTLVYIQ 139 (308)
T ss_dssp HHHTT----TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------------------------SSS-CTHHHHHH
T ss_pred HHHHH----hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------------ccc-CccHHHHH
Confidence 33321 24566778889999999999999999999886443 343 344 8999
Q ss_pred HHHHHHHhCCHHHHHHHHHhccCHH--------HHHHH-HHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCH
Q psy12802 1023 LAQHFKTVKDYKTAEKIYSHCDMHE--------QIVDM-YHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKF 1092 (1637)
Q Consensus 1023 la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~-y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~ 1092 (1637)
+|..+.+.|++++|+..|.++.... ..+.+ +...|++++|.+++++.+. .|..+.++..+|..+..+|++
T Consensus 140 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999985431 11111 2235788888877776433 345577788888888888888
Q ss_pred HHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHh--hCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1093 KEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRN--YHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1093 ~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
++|+.+|.++ +.. ..|+.....|..++..+...|++++|..++.++
T Consensus 220 ~~A~~~~~~a----------------------l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 220 NNTRVLFERV----------------------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH----------------------HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887776653 111 122234567888888888888888888888877
No 312
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.81 E-value=1.4e-07 Score=103.48 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
.....+|.++...|++++|+.+|.++... .|+ .+.++..+|.+|...|++++|+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKK------------------------NYN-LANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------------TCS-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------------------Ccc-hHHHHHHHHHHHHHcccHHHHHH
Confidence 45556888888999988888888765322 454 67789999999999999999998
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGE 1104 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~ 1104 (1637)
.|.++.....- .. .+ ......++..+|..+..+|++++|+..|.++-.
T Consensus 98 ~~~~al~~~p~--------~~----~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 98 TLTEGIKAVPG--------NA----TI------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHSTT--------CH----HH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCC--------cH----HH------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 88876433210 00 00 011236789999999999999999999888654
No 313
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=4.2e-07 Score=97.31 Aligned_cols=165 Identities=9% Similarity=0.043 Sum_probs=118.4
Q ss_pred CCChHHHHH---HHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccc
Q psy12802 939 GKVYDKCID---LTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQD 1015 (1637)
Q Consensus 939 ~~~~~~A~~---l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~ 1015 (1637)
.|++++|.+ ++.. .|.........+|..+...|++++|+.+|.++ +.+++....+..
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~ 64 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQAL-------------------QQQAQKSGDHTA 64 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHTTCCHHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-------------------HHHHHHcCCcHH
Confidence 455555555 4433 45566778889999999999999999998664 334444433333
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKE 1094 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~ 1094 (1637)
...++..+|..|...|++++|++.|.++ +++++...+ +.....++..+|..+..+|++++
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEE-------------------RELLASLPEDPLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6678999999999999999999888764 444444432 22557788999999999999999
Q ss_pred HHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1095 AERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1095 A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
|+.+|.++ +.+....++. .....++..+|..+...|++++|..+|.++
T Consensus 126 A~~~~~~a------l~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 126 ARQEYEKS------LVYAQQADDQ------------VAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHH------HHHHHHTTCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHhccch------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99986653 3222222221 222456788999999999999999998877
No 314
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.80 E-value=2.6e-07 Score=108.32 Aligned_cols=228 Identities=12% Similarity=0.087 Sum_probs=138.8
Q ss_pred cceEEEEECCCCCeEEEEE--CCCeEEEEEcCCCCCCceeEe------eccCCCCCEEEEEEcCCCC-EEEEeC-----C
Q psy12802 47 YVVKGLAFSPDSTKLAVAQ--SDNIIFIYKLGDDWGDKKVIC------NKFIQQCPVTTMVWLADGP-IIYGQS-----D 112 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~--~d~~i~iw~~~~~~~~~~~~~------~~~~~~~~v~~v~~s~~~~-l~~~~~-----d 112 (1637)
..+..++++|+|+.+++.. .++.++||.+.++ +... ....+-..+.+++++|+|+ +++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g----~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD----GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT----EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC----CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 5788999999999888764 2343667766532 2221 1113456899999999999 444333 5
Q ss_pred CcEEEEEcCCCce-eeecc------cCCcEEEEEEecCCCe-EEEEe---CCCcEEEEEecCCCCcccccccccccCCCC
Q psy12802 113 GKIKAAHVKANKT-QTLYA------SNSFVVALCLNVRGAG-VLSGH---ADGSIVRYYVTEDASNFDQQQGRVVQHPVP 181 (1637)
Q Consensus 113 ~~v~vwd~~~~~~-~~~~~------~~~~v~~l~~s~~g~~-l~s~~---~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~ 181 (1637)
+.|.+||+.+++. ..+.. +...+..++++|++.. +++.+ .++.|.+||+.+. +....+.+|...
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-----~~~r~~~~~~~~ 167 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-----LAARVLQGYPGI 167 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-----CEEEECTTCTTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-----CEEEEecCCCcc
Confidence 7899999999985 43332 2345789999986545 45554 5789999998753 333333333221
Q ss_pred cE-EEEecC--CeEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCC---
Q psy12802 182 PY-ALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSK--- 255 (1637)
Q Consensus 182 v~-~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~--- 255 (1637)
.. ...+.+ ..+.+.+.++.+..|. ..+..++|+|+|+.|.++...+-++|.++...
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN 229 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC
T ss_pred cccccceeECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC
Confidence 10 011111 1233333444443321 13678999999999998877774555554210
Q ss_pred -Ccccc---CCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcccc
Q psy12802 256 -SVWEE---QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 256 -~~~~~---~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
..-.. .......+......++++++|..+++...++.|.+||..++
T Consensus 230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 00000 00011112235668999999999998888999999998433
No 315
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.79 E-value=1.4e-07 Score=99.29 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
....+..+|..+...|++++|+..|.++.... +....++..+|..+...|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~A 61 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------------------------AFDVDVALHLGIAYVKTGAVDRG 61 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------------------------SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------------ccChHHHHHHHHHHHHcCCHHHH
Confidence 45678888999999999988888888876532 23356788889999999999998
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCC
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNL 1175 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~ 1175 (1637)
+.+|.++. + ..| ....++..+|..+...|++++|..+|.++
T Consensus 62 ~~~~~~~~-------------------~----~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--------------- 102 (186)
T 3as5_A 62 TELLERSL-------------------A----DAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKV--------------- 102 (186)
T ss_dssp HHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHH-------------------h----cCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 88765531 1 122 22567888999999999999999998887
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHH
Q psy12802 1176 WEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYAL 1255 (1637)
Q Consensus 1176 ~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~ 1255 (1637)
+.....+...+..++..+...|++++|++.|.++. + ..+..+.++..+|.
T Consensus 103 ------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------------------~-----~~~~~~~~~~~la~ 152 (186)
T 3as5_A 103 ------AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL-------------------G-----LRPNEGKVHRAIAF 152 (186)
T ss_dssp ------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-----HCTTCHHHHHHHHH
T ss_pred ------HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH-------------------h-----cCccchHHHHHHHH
Confidence 22223344456677777777777777777775541 1 13455788899999
Q ss_pred HHHhCCChHHHHHHHHHc
Q psy12802 1256 VLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1256 ~~~~~g~~~~A~~~~~~a 1273 (1637)
.+...|++++|+..|.++
T Consensus 153 ~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 999999999999998887
No 316
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.77 E-value=1.6e-07 Score=98.90 Aligned_cols=129 Identities=8% Similarity=0.026 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+..+|..+...|++++|+.+|.++... .|. ...++..+|..+...|++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~-~~~~~~~~~~~~~~~~~~~~A~ 62 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA------------------------DAF-DVDVALHLGIAYVKTGAVDRGT 62 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT------------------------TSC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------Ccc-ChHHHHHHHHHHHHcCCHHHHH
Confidence 345556777777888888888777776543 343 5667788888888888888888
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
.+|.++.... +....++..+|..+...|++++|+++|.++.
T Consensus 63 ~~~~~~~~~~-------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------------- 103 (186)
T 3as5_A 63 ELLERSLADA-------------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVA-------------- 103 (186)
T ss_dssp HHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhcC-------------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------
Confidence 7777653221 2234556666666666666666666654421
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+ ..| ....++..+|..+...|++++|+.+|.++
T Consensus 104 -----~----~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 104 -----E----ANP-INFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp -----H----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----h----cCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 0 011 12345566666666666666666666665
No 317
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=5.6e-08 Score=97.80 Aligned_cols=121 Identities=15% Similarity=0.072 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHH
Q psy12802 1073 GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQ 1152 (1637)
Q Consensus 1073 ~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1152 (1637)
|..+..++.+|..|..+|+|++|++.|.++ ++ ..| ....+|..+|.+|...|++++
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~a-------------------l~----~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTY-------------------IN----VQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHH-------------------HH----HCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HH----hCC-CCHHHHHHHHHHHHHcCchHH
Confidence 556777889999999999999999886663 11 133 336899999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHH-HHhccHHHHHHHHHhcCCh
Q psy12802 1153 AEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLL-NRLSLLESCISNACDTYQF 1231 (1637)
Q Consensus 1153 A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~i~~~~~~~~~ 1231 (1637)
|+.+|.++ +-..+.+..++..+|..+.+.|++++|++.| .++
T Consensus 84 A~~~~~~a---------------------l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a---------------- 126 (150)
T 4ga2_A 84 AVECYRRS---------------------VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA---------------- 126 (150)
T ss_dssp HHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH----------------
T ss_pred HHHHHHHH---------------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----------------
Confidence 99999998 6666777888999999999999998877665 333
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Q psy12802 1232 DFAFELAKIGMKSKLEEVHYKYALVLEDNGQ 1262 (1637)
Q Consensus 1232 ~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~ 1262 (1637)
+ ...|..+.++...+..+..+|+
T Consensus 127 ---l-----~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 127 ---A-----KLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---H-----HHSTTCHHHHHHHHHHHHTCCC
T ss_pred ---H-----HhCcCCHHHHHHHHHHHHHhCc
Confidence 2 2256778888888888888775
No 318
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.74 E-value=6.3e-12 Score=140.00 Aligned_cols=434 Identities=15% Similarity=0.172 Sum_probs=253.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCH-------HHHH
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNEN-------EKAL 933 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~-------~~a~ 933 (1637)
|..+...+...+||+.|.|++++. .+..+.....+.|.|+.-..++....+. .+.+
T Consensus 61 gkAqL~~~~v~eAIdsyIkA~Dps-----------------~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi 123 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKADDPS-----------------SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 123 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCCSCCC-----------------SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHH
T ss_pred HHHHHccCchHHHHHHHHhCCChH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 455777789999999999996554 3333444445677777777766654432 4667
Q ss_pred HHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccc
Q psy12802 934 ECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNK 1013 (1637)
Q Consensus 934 ~~y~~~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~ 1013 (1637)
-+|.+.+++.+-.+++.. +++..+ ..+|+-+...|.|+.|.-+|....+|.+...++.+.+++..|++-+++..++
T Consensus 124 ~ayAk~~rL~elEefl~~---~N~A~i-q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 124 FALAKTNRLAELEEFING---PNNAHI-QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHHTSCSSSTTTSTTSC---CSSSCT-HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHHhhCcHHHHHHHHcC---CCcccH-HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 889999998876665444 333322 4799999999999999999999999999999999999999999988877766
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHH----HhccCHHHHHHHHHHcCCHHHHHHHHHhhcChh-hHHHHHHHHHHHHHH
Q psy12802 1014 QDIAQHVKTLAQHFKTVKDYKTAEKIY----SHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVG-EIKATFIQKCKQLEE 1088 (1637)
Q Consensus 1014 ~~~~~~~~~la~~~~~~g~~~~A~~~~----~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~a~~~~~ 1088 (1637)
. +|..+-.++...+++.-|--+- ..+..+.+++..|...|.|++.+.+++..+..+ .....++.+|..|.+
T Consensus 200 k----tWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 200 R----TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp C----SHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred h----HHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 5 7999999999999988775544 345677889999999999999999998865322 235677888888775
Q ss_pred c--CCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCC-CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHH
Q psy12802 1089 E--NKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHP-DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKL 1165 (1637)
Q Consensus 1089 ~--g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~ 1165 (1637)
- .+.-|-+++|...-...+-+..+.+...|.++.-++..+.. +....+...-.....+.+.+.+-+.--....-+-+
T Consensus 276 Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYK 355 (624)
T 3lvg_A 276 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 355 (624)
T ss_dssp SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHH
T ss_pred cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHH
Confidence 4 23333333333322222333333333333333333332222 00000000000000000000000000000000222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhcc------------------H-HHHHHHHH
Q psy12802 1166 AIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSL------------------L-ESCISNAC 1226 (1637)
Q Consensus 1166 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~-~~~i~~~~ 1226 (1637)
++..|.+. .+..++.+........+....+++|.+.+. . +...++|.
T Consensus 356 Ai~FYL~e--------------~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 356 AIQFYLEF--------------KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp HHHHHTTS--------------CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHh--------------ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 22222211 122233333333344444444555555332 1 23335666
Q ss_pred hcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---hHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCC
Q psy12802 1227 DTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQ---FNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTS 1303 (1637)
Q Consensus 1227 ~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~ 1303 (1637)
+..+|+..-.-.+.+..-... .+|.-+++..- -.-|.-+|.+.++|++++.++.+.+.|.+|+..|..-...
T Consensus 422 EEEDy~~LR~SId~ydNFD~i----~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~- 496 (624)
T 3lvg_A 422 TEEDYQALRTSIDAYDNFDNI----SLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDT- 496 (624)
T ss_dssp HTTCCHHHHHTTSSCCCSCTT----HHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCT-
T ss_pred hhhhHHHHHHHHHHhccccHH----HHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCH-
Confidence 666666543333322222222 25555555432 1446667888888888888888888888888877665443
Q ss_pred hHHHHHHhHHHHHhcCChhhHHHHHHH---hCChHHHHHH
Q psy12802 1304 IGDILLNQSKCEFENENFSKFETLLLR---AHKVDLIIEK 1340 (1637)
Q Consensus 1304 ~~~~~~~~a~~~~~~~~~~~A~~~~~~---a~~~~~a~~~ 1340 (1637)
++-..+.+++.+.|+.+--..++-. .-+|+.++++
T Consensus 497 --elaeeLL~yFv~~g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 497 --ELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --THHHHHHHHHHHHCSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHHHcCchHHHHHHHHHHhhccChHHHHHH
Confidence 4455666778888887765554433 2344444444
No 319
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.74 E-value=4e-07 Score=116.62 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=165.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCc------cc-----------ce-EEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 23 IVRLRSEGNVAGIWAWRGQNGRK------SY-----------VV-KGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 23 g~~la~~~~d~~i~vwd~~~~~h------~~-----------~V-~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
+..|.+++.++.|+-+|..+|+. .. .+ .+++. ++..|++++.|+.|..+|..++. .+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~---~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ---RA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC---EE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC---Ee
Confidence 55666777788899999888771 00 00 11222 46688889999999999998862 21
Q ss_pred EeeccC-CCCCEEEEEEcC---CCCEEEEe------CCCcEEEEEcCCCce-eeecc-----------------------
Q psy12802 85 ICNKFI-QQCPVTTMVWLA---DGPIIYGQ------SDGKIKAAHVKANKT-QTLYA----------------------- 130 (1637)
Q Consensus 85 ~~~~~~-~~~~v~~v~~s~---~~~l~~~~------~d~~v~vwd~~~~~~-~~~~~----------------------- 130 (1637)
-..... +......+..+| ++.+++++ .++.|..||.++|+. -.+..
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 111111 111111111122 55554443 368999999999987 22221
Q ss_pred --------cCCcEEEEEEecCCCeEEEEeCCCc-------------------EEEEEecCCCCccccccccccc--CC--
Q psy12802 131 --------SNSFVVALCLNVRGAGVLSGHADGS-------------------IVRYYVTEDASNFDQQQGRVVQ--HP-- 179 (1637)
Q Consensus 131 --------~~~~v~~l~~s~~g~~l~s~~~dg~-------------------i~iwd~~~~~~g~~~~~~~~~~--~~-- 179 (1637)
+......++++|++..+++++.++. |..||..+. +.+..+.. |.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-----~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-----EYVWHYQTTPGDAW 299 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-----CEEEEEESSTTCCS
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-----ceeEeeecCCcccc
Confidence 0111125788999999999988764 899998874 44433332 21
Q ss_pred -----CCcE--EEEecC---CeEEEEecCCeEEEEe-CCCceeEEeeccCCC-----------------------CC---
Q psy12802 180 -----VPPY--ALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-----------------------YK--- 222 (1637)
Q Consensus 180 -----~~v~--~~~~~~---~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~-----------------------~~--- 222 (1637)
.++. .+.+.. ..++.++.+|.++++| .+|+.+......... ..
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence 1121 122222 2678889999999999 899988554322100 00
Q ss_pred --------CccEEEEEECCCCCEEEEEec---------------------------------------------Cc-EEE
Q psy12802 223 --------EREFTVACSSPSGQAVVVGSY---------------------------------------------DN-IKL 248 (1637)
Q Consensus 223 --------~~~i~~~~~sp~g~~l~~~~~---------------------------------------------d~-i~i 248 (1637)
......++++|+..++++.+. ++ +..
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 001123688998888887633 24 778
Q ss_pred EEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeC
Q psy12802 249 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG 307 (1637)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~ 307 (1637)
||..+++..|...... ++....++..+..+++|+.||.|+.||..+++.+++.
T Consensus 460 ~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 460 WDPVKQQAAWEVPYVT------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp EETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCCCCeEeEccCCC------CccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 8888887777543221 2222355567888999999999999999999887653
No 320
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.71 E-value=1.8e-07 Score=108.27 Aligned_cols=246 Identities=9% Similarity=0.050 Sum_probs=148.9
Q ss_pred eEEEEEcCCCCc-------ccceEEEEECCCCCeEEEEE----------CCCeEEEEEcCCCCCCceeEeeccCC-----
Q psy12802 34 GIWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVAQ----------SDNIIFIYKLGDDWGDKKVICNKFIQ----- 91 (1637)
Q Consensus 34 ~i~vwd~~~~~h-------~~~V~~~~~spd~~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~----- 91 (1637)
+|.++|..+++- ..+ .+.|||||+++.++. .++.|.+||..+. +.+.....+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~----~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF----LPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC----CEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----CEEEEEECCCcccc
Confidence 888999988762 223 899999999999886 3688999999985 333222111
Q ss_pred --CCCEEEEEEcCCCC-EEEEeC--CCcEEE--EEcCCCceeeecccCCcEEEEEEecCCCe-EEEEeCCCcEEEEEecC
Q psy12802 92 --QCPVTTMVWLADGP-IIYGQS--DGKIKA--AHVKANKTQTLYASNSFVVALCLNVRGAG-VLSGHADGSIVRYYVTE 163 (1637)
Q Consensus 92 --~~~v~~v~~s~~~~-l~~~~~--d~~v~v--wd~~~~~~~~~~~~~~~v~~l~~s~~g~~-l~s~~~dg~i~iwd~~~ 163 (1637)
......+.++|||+ ++++.. +..|.+ +|+.+ ...+.. .+. ..+.|+|+. +++.+.||.+.+.++.+
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 12345789999999 776653 467888 99887 322221 111 223455543 45556688887777765
Q ss_pred ----CCCccccccc----ccccCCCCcEEEEecCCeEEEEecCCeEEEEeCCCc---eeEEeeccCC-----CCCCccEE
Q psy12802 164 ----DASNFDQQQG----RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGR---VHRIFDYTAP-----HYKEREFT 227 (1637)
Q Consensus 164 ----~~~g~~~~~~----~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~-----~~~~~~i~ 227 (1637)
.+ +... .+.....+. ....++.++..+. +.+.+.|..+. .+..+..... ........
T Consensus 195 ~~~~~~----~v~~~~t~~i~vg~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 195 APAAAG----IVGAQCTGAQNCSSQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp SCCCCE----ECCCCSCTTSCBCSCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred ccccCC----eEEEEeeeeeeCCCCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 11 1111 111112232 2222356666666 89999994432 2222321100 00011112
Q ss_pred EEEECCCCCEEEEEec----------CcEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCE-EEEEe-cCCcEEE
Q psy12802 228 VACSSPSGQAVVVGSY----------DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGG-LCGSVEL 295 (1637)
Q Consensus 228 ~~~~sp~g~~l~~~~~----------d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-l~~~~-~dg~v~i 295 (1637)
.++++|||+.+.++.. +++.++|..+.+.. ..+.-......+.|+|||++ +++.. .+++|.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv------~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS------GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE------ECCEEEEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE------EEEECCCCcceEEECCCCCEEEEEccCCCCeEEE
Confidence 2689999998887643 34669998876542 22222236889999999985 55666 5999999
Q ss_pred EEcccccee
Q psy12802 296 FESVLKRTI 304 (1637)
Q Consensus 296 wd~~~~~~~ 304 (1637)
+|+.+++.+
T Consensus 342 ID~~t~kvv 350 (368)
T 1mda_H 342 YDAASDQDQ 350 (368)
T ss_dssp EESSSCEEE
T ss_pred EECCCCcEE
Confidence 999877654
No 321
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.71 E-value=3.4e-08 Score=99.46 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchH
Q psy12802 1116 RQYENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVE 1193 (1637)
Q Consensus 1116 ~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~ 1193 (1637)
|++++|+..+++..+ +..+..+..+|..|...|+|++|+++|.++ +...+.+..++.
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~a---------------------l~~~p~~~~a~~ 69 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTY---------------------INVQERDPKAHR 69 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCHHHHH
Confidence 334444444444333 223456788999999999999999999998 666777888899
Q ss_pred HHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHH-HH
Q psy12802 1194 PVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQF-IK 1272 (1637)
Q Consensus 1194 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~-~~ 1272 (1637)
.+|.++...|++++|+..|.++ + ...|..++++..+|..|...|++++|.+.| .+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~a-------------------l-----~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRS-------------------V-----ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-------------------H-----HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHH-------------------H-----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999999888665 1 225778899999999999999998887765 55
Q ss_pred cCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhcCC
Q psy12802 1273 ANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENEN 1320 (1637)
Q Consensus 1273 a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~ 1320 (1637)
| .+++|. .+.++...+..+..+|+
T Consensus 126 a-----------------------l~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 126 A-----------------------AKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp H-----------------------HHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred H-----------------------HHhCcC-CHHHHHHHHHHHHHhCc
Confidence 5 445676 47888888888887774
No 322
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.70 E-value=4.9e-06 Score=99.09 Aligned_cols=269 Identities=12% Similarity=0.127 Sum_probs=159.0
Q ss_pred CCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCC--------CCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-ee
Q psy12802 57 DSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--------QCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QT 127 (1637)
Q Consensus 57 d~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-~~ 127 (1637)
++..|.+++.++.|..+|..++. ..-...... ...+.+.....++.+++++.++.|..+|.++|+. ..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGK---EIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC---EEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCc---eeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 36788888889999999998752 111111111 2233332222344488888999999999999987 23
Q ss_pred ecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCC-----cEEEEecCCeEEEEecCCeEE
Q psy12802 128 LYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVP-----PYALSWPAGYILAAGSDRIVT 202 (1637)
Q Consensus 128 ~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~-----v~~~~~~~~~l~~~~~d~~i~ 202 (1637)
............. .+..+++++.++.|..+|..+. +.+......... ........+.+++++.++.+.
T Consensus 129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADG-----AVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVS 201 (376)
T ss_dssp EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTC-----CEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEE
T ss_pred EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCC-----cEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEE
Confidence 2222111111122 2457888889999999998764 333333221111 012233356888899999999
Q ss_pred EEe-CCCceeEEeeccCCCCCCccEEE---EEECC--CCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEE
Q psy12802 203 IYE-SDGRVHRIFDYTAPHYKEREFTV---ACSSP--SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL 275 (1637)
Q Consensus 203 iwd-~~~~~~~~~~~~~~~~~~~~i~~---~~~sp--~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l 275 (1637)
.+| .+|+.+........ .....+.. +..+| .+..+.+++.++ +..+|..+++..|..... ....+
T Consensus 202 ~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~~~~~ 273 (376)
T 3q7m_A 202 AVLMEQGQMIWQQRISQA-TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------SVNDF 273 (376)
T ss_dssp EEETTTCCEEEEEECCC------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------CEEEE
T ss_pred EEECCCCcEEEEEecccC-CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------CCCCc
Confidence 999 78998877764321 00000000 11112 245677777676 999998888877754321 23333
Q ss_pred EEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEE
Q psy12802 276 SWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL 355 (1637)
Q Consensus 276 ~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 355 (1637)
.. ++..+++++.+|.|..+|..+++..+.... +... .+....+. ++.++
T Consensus 274 ~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~--------------~~~~--------------~~~~~~~~-~~~l~ 322 (376)
T 3q7m_A 274 IV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD--------------LLHR--------------LLTSPVLY-NGNLV 322 (376)
T ss_dssp EE--ETTEEEEEETTCCEEEEETTTCCEEEEECT--------------TTTS--------------CCCCCEEE-TTEEE
T ss_pred eE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc--------------cCCC--------------cccCCEEE-CCEEE
Confidence 33 466788889999999999988876654210 0000 11111222 36777
Q ss_pred EEeCCCcEEEeecccccee
Q psy12802 356 VARTPDTLLLGDLHRNLLS 374 (1637)
Q Consensus 356 v~~~~~~i~i~d~~~~~~~ 374 (1637)
+++.++.+.++|..++++.
T Consensus 323 v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EECTTSEEEEEETTTCCEE
T ss_pred EEeCCCeEEEEECCCCcEE
Confidence 7777888999998777654
No 323
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.68 E-value=9e-10 Score=130.23 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=136.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc-----ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeecc--CCCCC
Q psy12802 22 DIVRLRSEGNVAGIWAWRGQNGRK-----SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKF--IQQCP 94 (1637)
Q Consensus 22 dg~~la~~~~d~~i~vwd~~~~~h-----~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~ 94 (1637)
++..+++++.|+.|+.||..+|+. ...+.+..+.+++..+++++.||.|+.||..++....+...... ....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 678899999999999999998872 24455555667787888888999999999977522111100000 01111
Q ss_pred EEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccc
Q psy12802 95 VTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQG 173 (1637)
Q Consensus 95 v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~ 173 (1637)
+ +..++.+++++.++.|+.||..+|+. ..+..+. ...++|++..+++++.|+.|+.||..+. +.+.
T Consensus 88 ~----~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG-----~~~W 154 (369)
T 2hz6_A 88 C----RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTR-----ELRW 154 (369)
T ss_dssp C----C-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSS-----SCCC
T ss_pred e----EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCC-----CEEE
Confidence 1 11233477788899999999999987 4443332 2356678889999999999999999874 3333
Q ss_pred ccccCCCCcEEEEecC-----CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEE---EecC
Q psy12802 174 RVVQHPVPPYALSWPA-----GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV---GSYD 244 (1637)
Q Consensus 174 ~~~~~~~~v~~~~~~~-----~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~---~~~d 244 (1637)
.+..+. .....+++ +.+++++.+|.|..|| .+|+.+.++....+ .+....++++|...+. .+..
T Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~p-----v~~~~~~~~dg~~~v~~~~~~~~ 227 (369)
T 2hz6_A 155 NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASP-----VVAFYVWQREGLRKVMHINVAVE 227 (369)
T ss_dssp EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSC-----EEEEEECTTSSCEEECCEEEEHH
T ss_pred eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCc-----eEEEEEecCCceEeccceeeccc
Confidence 332111 11122333 5788899999999999 78998887764322 2344566777754321 1122
Q ss_pred cEEEEEeCCCC----CccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 245 NIKLFAWSPSK----SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 245 ~i~i~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.++.+|..++. ..|......... .++ -.+..|++++.+|.++.++..
T Consensus 228 ~l~~ld~~tG~~~~~~~W~~~~~~~~~--sp~------~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 228 TLRYLTFMSGEVGRITKWKYPFPKETE--AKS------KLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCCCHHH--HHH------HSEEEECBEECSSCEECCEEE
T ss_pred ceeeeehhcCCcccceeeeeccCcccc--ccc------cccceEEEecccCCEEecCcc
Confidence 25666665555 556443322110 111 124568889999999988874
No 324
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=9.8e-07 Score=100.82 Aligned_cols=142 Identities=9% Similarity=-0.016 Sum_probs=103.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12802 962 EEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYS 1041 (1637)
Q Consensus 962 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 1041 (1637)
..+|..+...+++++|+.+|.++... .....+......++..+|.+|...|++++|+.+|.
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~-------------------~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 179 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQ-------------------QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFE 179 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHT-------------------CCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHH-------------------hcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35788888888999999888775321 11111111134578999999999999999999998
Q ss_pred hccCHHHHHHHHHHcCCHHHHHHHHHhh-cChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHH
Q psy12802 1042 HCDMHEQIVDMYHQTGQWEKAYAIAEQH-LNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYEN 1120 (1637)
Q Consensus 1042 ~~~~~~~~~~~y~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~ 1120 (1637)
++. +++++. ...+....++.++|.+|..+|+|++|+.+|.++
T Consensus 180 ~al-------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a------------------ 222 (293)
T 3u3w_A 180 QIL-------------------KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA------------------ 222 (293)
T ss_dssp HHH-------------------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHH-------------------HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------
Confidence 753 333333 234566789999999999999999999986553
Q ss_pred HHHHHHhhC-CCchHHHHHHHHHHHHHcc-CHHHHHHHHHHc
Q psy12802 1121 MIKLVRNYH-PDLLDTTLLHLAQECEESK-NYKQAEKYYLDC 1160 (1637)
Q Consensus 1121 a~~~~~~~~-~~~~~~~~~~la~~~~~~g-~~~~A~~~y~~a 1160 (1637)
+++..... ....+.++..+|.++...| .+++|..+|.+|
T Consensus 223 -l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 223 -IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp -HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 33333322 2445789999999999999 579999999887
No 325
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.66 E-value=1.3e-06 Score=100.99 Aligned_cols=257 Identities=7% Similarity=-0.106 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe----------CCCcEEEEEcCCCce-eeeccc-----
Q psy12802 69 IIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ----------SDGKIKAAHVKANKT-QTLYAS----- 131 (1637)
Q Consensus 69 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~----------~d~~v~vwd~~~~~~-~~~~~~----- 131 (1637)
+|.++|..+. +++........+ .+.++||++ ++++. .++.|.+||+.+++. .++...
T Consensus 47 ~vsvID~~t~----~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCC----eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 7889998885 444443333345 799999999 66654 368899999999998 555422
Q ss_pred --CCcEEEEEEecCCCeEEEEeC--CCcEEE--EEecCCCCcccccccccccCCCCcEEEEecC-CeEEEEecCCeEEEE
Q psy12802 132 --NSFVVALCLNVRGAGVLSGHA--DGSIVR--YYVTEDASNFDQQQGRVVQHPVPPYALSWPA-GYILAAGSDRIVTIY 204 (1637)
Q Consensus 132 --~~~v~~l~~s~~g~~l~s~~~--dg~i~i--wd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~iw 204 (1637)
......+.+||||+++++++. +..|.+ +|..+ +..+.. .+.+ .+...+ ..+++.+.|+.+.+.
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--------v~~i~v-~~~~-~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------DQLTKS-ASCF-HIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------EEEEEC-SSCC-CCEEEETTEEECCCCTTSCEEE
T ss_pred ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--------ceEEEC-CCce-EEccCCCeEEEEEcCCCCEEEE
Confidence 134568899999999999875 456888 87754 111211 1111 111122 255566678888888
Q ss_pred e-CC-----CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCcEEEEEeCCCCCc----cccCCCcccCCC---cc
Q psy12802 205 E-SD-----GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV----WEEQPNKTIPNL---YT 271 (1637)
Q Consensus 205 d-~~-----~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~----~~~~~~~~~~~~---~~ 271 (1637)
| .+ ++........-. ....+. . ++++..++..+.+.+.+.|....... |........... ..
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~-vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQN-CSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSC-BCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred ECccccccCCeEEEEeeeeee-CCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 8 33 333211000000 111222 3 66666666655533888887543211 211100000011 11
Q ss_pred eeEEEEcCCCCEEEEEec-C--------CcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecccCce
Q psy12802 272 ISALSWKRDGSRIACGGL-C--------GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYE 342 (1637)
Q Consensus 272 i~~l~~spdg~~l~~~~~-d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 342 (1637)
...+.++|||+++.++.. . +.+.++|+.+++.+.+- .+ +..
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i--------------------------~v----g~~ 315 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI--------------------------SN----GHD 315 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC--------------------------EE----EEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE--------------------------EC----CCC
Confidence 223689999998887643 2 35669999776654321 11 225
Q ss_pred eeEEEEecCce-EEEE-e-CCCcEEEeeccccceeee
Q psy12802 343 ITDVAIMGNDR-YLVA-R-TPDTLLLGDLHRNLLSEV 376 (1637)
Q Consensus 343 i~~v~~s~~~~-~lv~-~-~~~~i~i~d~~~~~~~~~ 376 (1637)
...+.|+|+++ ++++ . .+++|.++|+.+.++...
T Consensus 316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 78899999975 4555 5 589999999998876643
No 326
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=1e-07 Score=122.73 Aligned_cols=183 Identities=12% Similarity=0.028 Sum_probs=133.1
Q ss_pred HhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHH
Q psy12802 969 IENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQ 1048 (1637)
Q Consensus 969 ~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 1048 (1637)
...|++++|+..|.++... .++. ....+|+ ...++..+|..|...|++++|+..|.++...+
T Consensus 402 ~~~~~~~~A~~~~~~al~~-----------~~~~-----~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHG-----------ALDA-----DGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-----------------------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHhhhh-----------cccc-----ccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-
Confidence 6778888888888775310 0000 0011344 67789999999999999999999998764332
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhh
Q psy12802 1049 IVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNY 1128 (1637)
Q Consensus 1049 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~ 1128 (1637)
|....+++.+|..|..+|++++|+..|.++- + .
T Consensus 464 ------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-------------------~----l 496 (681)
T 2pzi_A 464 ------------------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVL-------------------D----T 496 (681)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------H----H
T ss_pred ------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------H----h
Confidence 4557889999999999999999999876631 1 1
Q ss_pred CCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchH
Q psy12802 1129 HPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSA 1208 (1637)
Q Consensus 1129 ~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 1208 (1637)
.| ....++..+|..|...|+|++ +.+|.++ +...+.+..++..+|.++.+.|++++|
T Consensus 497 ~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~a---------------------l~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 497 FP-GELAPKLALAATAELAGNTDE-HKFYQTV---------------------WSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp ST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CC-CChHHHHHHHHHHHHcCChHH-HHHHHHH---------------------HHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 23 225788999999999999999 9999998 666666777888888888888888888
Q ss_pred HHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCh
Q psy12802 1209 VRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQF 1263 (1637)
Q Consensus 1209 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~ 1263 (1637)
++.|.++ ....+....+++.+|..|...++.
T Consensus 554 ~~~~~~a------------------------l~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 554 VRTLDEV------------------------PPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHTS------------------------CTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHhh------------------------cccCcccHHHHHHHHHHHHccCCC
Confidence 8887665 223566778888888887665553
No 327
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=2.5e-07 Score=119.01 Aligned_cols=223 Identities=8% Similarity=-0.099 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHH
Q psy12802 1074 EIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQA 1153 (1637)
Q Consensus 1074 ~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 1153 (1637)
..+..+...| ...|++++|++.|.++... .++. -.... +....++..+|..+...|+|++|
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~-----------~~~~----~~~~~-p~~~~~~~~~a~~~~~~g~~~~A 452 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHG-----------ALDA----DGVDF-SESVELPLMEVRALLDLGDVAKA 452 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC----------------------CC-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhh-----------cccc----ccccc-ccchhHHHHHHHHHHhcCCHHHH
Confidence 3344444444 6678888887776653210 0000 00112 33457899999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHH
Q psy12802 1154 EKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDF 1233 (1637)
Q Consensus 1154 ~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~ 1233 (1637)
+..|.++ +.....+..++..+|.++...|++++|++.|.++
T Consensus 453 ~~~~~~a---------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------ 493 (681)
T 2pzi_A 453 TRKLDDL---------------------AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEV------------------ 493 (681)
T ss_dssp HHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------
T ss_pred HHHHHHH---------------------hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------
Confidence 9999999 6667778888999999999999999999988665
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHH
Q psy12802 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSK 1313 (1637)
Q Consensus 1234 a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~ 1313 (1637)
....|..+..++.+|..|...|++++ ++.|.++ .+.+|. .+.++..+|.
T Consensus 494 ------l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a-----------------------l~~~P~-~~~a~~~lg~ 542 (681)
T 2pzi_A 494 ------LDTFPGELAPKLALAATAELAGNTDE-HKFYQTV-----------------------WSTNDG-VISAAFGLAR 542 (681)
T ss_dssp ------HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH-----------------------HHHCTT-CHHHHHHHHH
T ss_pred ------HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHH-----------------------HHhCCc-hHHHHHHHHH
Confidence 12256678889999999999999999 9888887 344666 4678899999
Q ss_pred HHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHH
Q psy12802 1314 CEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQ 1393 (1637)
Q Consensus 1314 ~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1393 (1637)
.+...|++++|+..|.++-.. .|....++..+|.++..
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l------------------------------------------~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT------------------------------------------SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT------------------------------------------STTHHHHHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHhhccc------------------------------------------CcccHHHHHHHHHHHHc
Confidence 999999999998887665221 11122235566666655
Q ss_pred c--------CCHHHHHHHHHhcCCcchh---HHHHHHHHHHHHHH
Q psy12802 1394 N--------GEFYNAVECYLKIKNVDVN---LMVKILNEVTQLTL 1427 (1637)
Q Consensus 1394 ~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~ 1427 (1637)
. +++.+|...+.++....+. ....++..++.+..
T Consensus 581 ~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~~~ 625 (681)
T 2pzi_A 581 GRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDWLK 625 (681)
T ss_dssp ------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3 3488888888877654442 33344555666554
No 328
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.65 E-value=2.1e-07 Score=108.85 Aligned_cols=292 Identities=12% Similarity=0.067 Sum_probs=176.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEe
Q psy12802 14 LQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVIC 86 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~ 86 (1637)
..++++..+|.. ..++.++.|..|| .+++ +...+.++...++|. |.+++.+ |..+|. ++ +.+.
T Consensus 22 ~~~~~~d~~g~l-~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g----~~~~ 91 (330)
T 3hxj_A 22 DSSPILAKNGTI-YLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DG----TEKW 91 (330)
T ss_dssp CCCCEECTTSCE-ECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CG----GGGG
T ss_pred ccCceEccCCeE-EEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CC----cEEE
Confidence 345566667754 4555677888888 6665 233467777777775 4444444 777775 32 1111
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCC
Q psy12802 87 NKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDA 165 (1637)
Q Consensus 87 ~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~ 165 (1637)
............... ++.+.+++.++.|..+|.. ++. .....+...+.++...++|. +.+++.++.|..+|.. .
T Consensus 92 ~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g- 166 (330)
T 3hxj_A 92 RFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G- 166 (330)
T ss_dssp GSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S-
T ss_pred EEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C-
Confidence 111111122222333 5558888889999999998 665 44444445566677777776 6667888999999876 2
Q ss_pred CcccccccccccCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC
Q psy12802 166 SNFDQQQGRVVQHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 244 (1637)
Q Consensus 166 ~g~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d 244 (1637)
............+.++...+ +.+.+++ +.|..+|.+|+.+..+.. ....+.++..+++|...+.....
T Consensus 167 ----~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~-----~~~~~~~~~~~~~g~l~v~t~~~ 235 (330)
T 3hxj_A 167 ----TEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYA-----GYWTVTRPAISEDGTIYVTSLDG 235 (330)
T ss_dssp ----CEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECC-----SSCCCSCCEECTTSCEEEEETTT
T ss_pred ----CEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEcc-----CCcceeceEECCCCeEEEEcCCC
Confidence 33334444455566677754 5677777 889999988887766653 22357778888888655544434
Q ss_pred cEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecC
Q psy12802 245 NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPL 324 (1637)
Q Consensus 245 ~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (1637)
++..++. .+...|..... ...+.++.+.++|. |.+++.+|.|..+|. +++..+.. . +
T Consensus 236 gl~~~~~-~g~~~~~~~~~-----~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~------~---------~ 292 (330)
T 3hxj_A 236 HLYAINP-DGTEKWRFKTG-----KRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNF------E---------T 292 (330)
T ss_dssp EEEEECT-TSCEEEEEECS-----SCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEE------E---------C
T ss_pred eEEEECC-CCCEeEEeeCC-----CCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEE------E---------c
Confidence 4767653 33333432211 11233455555665 677888888999985 44433221 0 0
Q ss_pred CCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeec
Q psy12802 325 SGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDL 368 (1637)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~ 368 (1637)
.+..+.++...+++++.+++.+|.+.+...
T Consensus 293 --------------~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 293 --------------GSWIIATPVIDENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp --------------SSCCCSCCEECTTCCEEEECTTSCEEEEEC
T ss_pred --------------CCccccceEEcCCCEEEEEcCCCeEEEEec
Confidence 112455666667788888888888887544
No 329
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=4.8e-06 Score=88.90 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
...++..+|..+...|++++|+.+|.++ ++++++....+....++..+|..+..+|++++|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQAL-------------------QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHH-------------------HHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6778999999999999999999888764 455555555667788899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCC--chHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPD--LLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+.+|.+ ++++......+ ....++..+|..+...|++++|+.+|.++
T Consensus 86 ~~~~~~-------------------al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 86 RRCFLE-------------------ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHH-------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHH-------------------HHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 998554 23333332211 33567889999999999999999999887
No 330
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=2e-06 Score=99.79 Aligned_cols=233 Identities=10% Similarity=0.107 Sum_probs=145.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------------------------ccceEEEEECCCCCeEEEEEC
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK--------------------------SYVVKGLAFSPDSTKLAVAQS 66 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h--------------------------~~~V~~~~~spd~~~la~~~~ 66 (1637)
....++++|+|+++.++..++.|..|+..++.. ...+.+++++|++..|.++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 346789999999777888888999998776431 125789999984345666655
Q ss_pred CCeEEEEEcCCCCCCceeEeecc-C-CCCCEEEEEEcC-CCC-EEEEeC-----------------CCcEEEEEcCCCce
Q psy12802 67 DNIIFIYKLGDDWGDKKVICNKF-I-QQCPVTTMVWLA-DGP-IIYGQS-----------------DGKIKAAHVKANKT 125 (1637)
Q Consensus 67 d~~i~iw~~~~~~~~~~~~~~~~-~-~~~~v~~v~~s~-~~~-l~~~~~-----------------d~~v~vwd~~~~~~ 125 (1637)
.+.|..+|..++ ..+.+.... + .......+++.| +|. +++... ++.|..+|..+++.
T Consensus 100 ~~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 100 YYHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 566888876542 112222111 1 124578899999 999 444322 36799999888876
Q ss_pred eeecccCCcEEEEEEecCCCeEEEE-eCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-eEEEEe-c-----
Q psy12802 126 QTLYASNSFVVALCLNVRGAGVLSG-HADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-YILAAG-S----- 197 (1637)
Q Consensus 126 ~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~-~----- 197 (1637)
..+.........++|+|+|+.|.++ +..+.|.+|++.....+ . ...+....+ +..++++++ .+.++. .
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~--~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG--T-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--C-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--c-cceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 4443333456789999999976665 45689999998753211 1 111112223 788899873 444443 3
Q ss_pred -----CCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCC
Q psy12802 198 -----DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 253 (1637)
Q Consensus 198 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~ 253 (1637)
.+.|..+|.+|+.+..+....+ ..-..++++++ .+|+++++...++ |..+++..
T Consensus 254 ~~~~~~~~v~~~d~~G~~~~~~~~~~g-~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEFGNILEVIPLPPP-FAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEECTTSCEEEEEECCTT-TTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ccCCCccEEEEECCCCCEEEEEECCCC-CccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678899988998888875432 11234566666 3555444444444 87777654
No 331
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=5.5e-07 Score=96.65 Aligned_cols=181 Identities=12% Similarity=0.014 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHcc--CHHHHHHHHHh-cCC-HHHHHHHHHhcCCccchHHHHHHHHHhcCcchHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCN--EWKLAIKMYRS-LNL-WEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAV 1209 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~--~~~~~~~~y~~-~g~-~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 1209 (1637)
.+.+...|..+...|+|++|+.+|.++- ++......+.. ... ...+ ......+|..+.+.|++++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEIS---------SKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHH---------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhh---------HHHHHHHHHHHHHCCCHHHHH
Confidence 3556778999999999999999999982 23322222211 100 0000 112234666677777766666
Q ss_pred HHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCH
Q psy12802 1210 RLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDW 1289 (1637)
Q Consensus 1210 ~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~ 1289 (1637)
..|.++ ....|..+++++.+|..|...|++++|+..|.++
T Consensus 75 ~~~~~a------------------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------- 114 (208)
T 3urz_A 75 LFYKEL------------------------LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI---------------- 114 (208)
T ss_dssp HHHHHH------------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred HHHHHH------------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------
Confidence 666543 1125677899999999999999999999999987
Q ss_pred HHHHHHHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHH
Q psy12802 1290 ENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEY 1369 (1637)
Q Consensus 1290 ~~a~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~ 1369 (1637)
.+++|+ .+.++..+|..+...|....+. +...| +....+
T Consensus 115 -------l~~~P~-~~~a~~~lg~~~~~~~~~~~~~-----------~~~~~-------------~~~~~~--------- 153 (208)
T 3urz_A 115 -------LQLEAD-NLAANIFLGNYYYLTAEQEKKK-----------LETDY-------------KKLSSP--------- 153 (208)
T ss_dssp -------HHHCTT-CHHHHHHHHHHHHHHHHHHHHH-----------HHHHH-------------C---CC---------
T ss_pred -------HHcCCC-CHHHHHHHHHHHHHHhHHHHHH-----------HHHHH-------------HHHhCC---------
Confidence 344666 4678888888876554332211 11222 111100
Q ss_pred HHHHhcccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCCcch
Q psy12802 1370 EKEINTNISKDIHSLITQARQWEQNGEFYNAVECYLKIKNVDV 1412 (1637)
Q Consensus 1370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~ 1412 (1637)
.+....+..+|..+...|+|++|+.+|.++....|
T Consensus 154 --------~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 154 --------TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred --------CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 01112356678888889999999999999987766
No 332
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.4e-06 Score=99.53 Aligned_cols=143 Identities=9% Similarity=-0.001 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12802 961 EEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY 1040 (1637)
Q Consensus 961 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 1040 (1637)
...+|..+...|++++|+.+|.++... .....++.....++..+|..|...|++++|+.+|
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 178 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQ-------------------QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTT-------------------CCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH-------------------HhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345777778888888888887765332 1111122113568999999999999999999999
Q ss_pred HhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHH
Q psy12802 1041 SHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGE-IKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYE 1119 (1637)
Q Consensus 1041 ~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~ 1119 (1637)
.++. ++.+...+.+. ...++.++|..|..+|+|++|+.+|.++
T Consensus 179 ~kal-------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka----------------- 222 (293)
T 2qfc_A 179 EQIL-------------------KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA----------------- 222 (293)
T ss_dssp HHHH-------------------HHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHH-------------------HHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH-----------------
Confidence 8753 33333322222 2378999999999999999999996663
Q ss_pred HHHHHHHhh-CCCchHHHHHHHHHHHHHccCHHHH-HHHHHHc
Q psy12802 1120 NMIKLVRNY-HPDLLDTTLLHLAQECEESKNYKQA-EKYYLDC 1160 (1637)
Q Consensus 1120 ~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A-~~~y~~a 1160 (1637)
+++.... .......++..+|..|...|++++| ..+|.+|
T Consensus 223 --l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 223 --IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp --HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2222221 2234577899999999999999999 7778776
No 333
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.4e-06 Score=99.40 Aligned_cols=190 Identities=9% Similarity=-0.087 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy12802 1018 QHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAER 1097 (1637)
Q Consensus 1018 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 1097 (1637)
..+...+..+...|+|++|++.|.++.... ............+..+|..+..+|++++|+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE-------------------EYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------------------CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc-------------------cCChhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 345556777777778877777776542211 0000011223456678888999999999998
Q ss_pred HHHHhCCchHHHHHHHhcCCHHHHHHHHHh-hCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCH
Q psy12802 1098 LYLIIGEPDLAISMFKNQRQYENMIKLVRN-YHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLW 1176 (1637)
Q Consensus 1098 ~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~ 1176 (1637)
.|.++-.. ..+ ..+.....+++.+|..|...|+|++|+.+|.++-+
T Consensus 137 ~~~~al~~-------------------~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~-------------- 183 (293)
T 2qfc_A 137 ELKKLLNQ-------------------QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK-------------- 183 (293)
T ss_dssp HHHHHHTT-------------------CCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHH-------------------HhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 87664211 111 11122356889999999999999999999999832
Q ss_pred HHHHHHHHhcCC-----ccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhc-CCCCcHHHH
Q psy12802 1177 EDAYRIALSNGG-----QEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIG-MKSKLEEVH 1250 (1637)
Q Consensus 1177 ~~A~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~-~~~~~~~~~ 1250 (1637)
+++..++ ..++..+|..|...|++++|+++|.++ +++.... .......++
T Consensus 184 -----~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka-------------------l~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 184 -----QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-------------------IEISCRINSMALIGQLY 239 (293)
T ss_dssp -----HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHTTBCSSHHHHH
T ss_pred -----HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH-------------------HHHHHhcCcHHHHHHHH
Confidence 1222211 135678899999999999999998654 2222222 233457899
Q ss_pred HHHHHHHHhCCChHHH-HHHHHHcCChHHHHHHHHhcCCH
Q psy12802 1251 YKYALVLEDNGQFNEA-ETQFIKANKPKEAISMYIHNQDW 1289 (1637)
Q Consensus 1251 ~~~a~~~~~~g~~~~A-~~~~~~a~~~~~ai~~~~~~~~~ 1289 (1637)
+.+|..|...|++++| ...|.+| +.++...++.
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~A------l~~~~~~~~~ 273 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKA------SFFFDILEMH 273 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH------HHHHHHTTCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHH------HHHHHHhCcH
Confidence 9999999999999999 7778877 6655544443
No 334
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=1.4e-06 Score=89.04 Aligned_cols=147 Identities=11% Similarity=0.037 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
..+...+|..+...|++++|+.+|.++. ++.+...++.....++..+|..+...|++++|+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 69 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL-------------------LIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456788999999999999999886643 333333333334567899999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ 1117 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~ 1117 (1637)
+.|.++ +++.....+.+....++..+|..+...|++++|+.+|.++ +.+..+.+.
T Consensus 70 ~~~~~a-------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~~~~~~ 124 (164)
T 3ro3_A 70 EYYKKT-------------------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------LAIAQELKD 124 (164)
T ss_dssp HHHHHH-------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTC
T ss_pred HHHHHH-------------------HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHccc
Confidence 988775 3334444344556778899999999999999999986553 333222221
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+.....++..+|..+...|++++|.++|.++
T Consensus 125 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 125 ------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ------------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1233567889999999999999999999887
No 335
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=6.6e-07 Score=97.50 Aligned_cols=63 Identities=8% Similarity=-0.107 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy12802 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAE 1096 (1637)
Q Consensus 1017 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 1096 (1637)
+..+..+|..+...|++++|+..|.++.... ...+....++..+|..|..+|++++|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~----------------------p~~~~~~~a~~~lg~~~~~~~~~~~A~ 61 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY----------------------PFGPYSQQVQLDLIYAYYKNADLPLAQ 61 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------TTSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4467788888888888888888887753211 112334678888999999999999998
Q ss_pred HHHHH
Q psy12802 1097 RLYLI 1101 (1637)
Q Consensus 1097 ~~y~~ 1101 (1637)
..|.+
T Consensus 62 ~~~~~ 66 (225)
T 2yhc_A 62 AAIDR 66 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88766
No 336
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=6.8e-07 Score=114.22 Aligned_cols=268 Identities=13% Similarity=0.167 Sum_probs=165.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCc------cc------------ceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 23 IVRLRSEGNVAGIWAWRGQNGRK------SY------------VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 23 g~~la~~~~d~~i~vwd~~~~~h------~~------------~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
+..|.+++.++.|+-+|..+|+. .. ...++++ ++..|++++.|+.|..+|..++. .+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~---~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK---EV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC---EE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC---EE
Confidence 44566666677888888877761 00 0112222 46788889999999999998862 11
Q ss_pred EeeccC-C---CCCEEEEEEcCCCCEEEEeC------CCcEEEEEcCCCce-eeecccC---------------------
Q psy12802 85 ICNKFI-Q---QCPVTTMVWLADGPIIYGQS------DGKIKAAHVKANKT-QTLYASN--------------------- 132 (1637)
Q Consensus 85 ~~~~~~-~---~~~v~~v~~s~~~~l~~~~~------d~~v~vwd~~~~~~-~~~~~~~--------------------- 132 (1637)
-..... . ...+.+--...++.+++++. ++.|+.+|..+|+. -.+....
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 111111 0 01111100111444555443 68999999999987 2222111
Q ss_pred -----------CcEEEEEEecCCCeEEEEeCCC-------------------cEEEEEecCCCCcccccccccc--cCC-
Q psy12802 133 -----------SFVVALCLNVRGAGVLSGHADG-------------------SIVRYYVTEDASNFDQQQGRVV--QHP- 179 (1637)
Q Consensus 133 -----------~~v~~l~~s~~g~~l~s~~~dg-------------------~i~iwd~~~~~~g~~~~~~~~~--~~~- 179 (1637)
.....++++|++..+++++.++ +|..+|..+. +.+..+. .|.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-----~~~W~~~~~~~d~ 306 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-----KYKWHYQETPGDN 306 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-----CEEEEEESSTTCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-----CEEEEEecCCCcc
Confidence 1113578899999999888764 4888888774 3333322 121
Q ss_pred ------CCcEEEEe--cC---CeEEEEecCCeEEEEe-CCCceeEEeeccCCC------CCCccE---------------
Q psy12802 180 ------VPPYALSW--PA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPH------YKEREF--------------- 226 (1637)
Q Consensus 180 ------~~v~~~~~--~~---~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~------~~~~~i--------------- 226 (1637)
..+..+.. .. +.+++++.+|.+.++| .+|+.+..+...... .....+
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 12222222 22 4688889999999999 899998776642110 000011
Q ss_pred ---------EEEEECCCCCEEEEEecC-------------------------------------------c-EEEEEeCC
Q psy12802 227 ---------TVACSSPSGQAVVVGSYD-------------------------------------------N-IKLFAWSP 253 (1637)
Q Consensus 227 ---------~~~~~sp~g~~l~~~~~d-------------------------------------------~-i~i~~~~~ 253 (1637)
..++++|++.++++.+.+ + |..||..+
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t 466 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence 256889998888876432 4 88888888
Q ss_pred CCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeee
Q psy12802 254 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 306 (1637)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~ 306 (1637)
++..|..... .++....+++++..+++++.||.+++||..+++.++.
T Consensus 467 G~~~W~~~~~------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 467 QKAAWSVEHV------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp TEEEEEEEES------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CcEEeecCCC------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 8877755322 1233445666788899999999999999998887765
No 337
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=5.3e-07 Score=98.26 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCc---cchHHHHHHHHHhcCcchHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQ---EAVEPVVYLWAKSLGGDSAVR 1210 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 1210 (1637)
+..+..+|..+...|+|++|+..|.++ +...+.++ .++..+|..+.+.|++++|+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~---------------------~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEAL---------------------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH---------------------HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456788999999999999999999988 32222221 355666777777777777766
Q ss_pred HHHHh
Q psy12802 1211 LLNRL 1215 (1637)
Q Consensus 1211 ~~~~~ 1215 (1637)
.|.+.
T Consensus 63 ~~~~~ 67 (225)
T 2yhc_A 63 AIDRF 67 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 338
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.59 E-value=5.9e-07 Score=96.37 Aligned_cols=177 Identities=11% Similarity=0.046 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhccCHHH-HHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQ-IVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1017 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
...+...|..+...|++++|+.+|.++...+. -.+.+.. ..........+.....+|..|..+|++++|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW----------TNVDKNSEISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH----------HHSCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH----------hhhcchhhhhHHHHHHHHHHHHHCCCHHHH
Confidence 34567788889999999999999998754321 1111111 000001122345556699999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCC
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNL 1175 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~ 1175 (1637)
+..|.++ + + ..| ....++..+|..+...|++++|+..|.++
T Consensus 74 ~~~~~~a-------------------l---~-~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------- 114 (208)
T 3urz_A 74 YLFYKEL-------------------L---Q-KAP-NNVDCLEACAEMQVCRGQEKDALRMYEKI--------------- 114 (208)
T ss_dssp HHHHHHH-------------------H---H-HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHH-------------------H---H-HCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Confidence 9886653 1 1 233 33678999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHhcCcc--hHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHH
Q psy12802 1176 WEDAYRIALSNGGQEAVEPVVYLWAKSLGGD--SAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKY 1253 (1637)
Q Consensus 1176 ~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 1253 (1637)
+...+.+..++..+|..|...|+.+ .+...|.+. ..++.....++..
T Consensus 115 ------l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~a~~~~ 163 (208)
T 3urz_A 115 ------LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-------------------------SSPTKMQYARYRD 163 (208)
T ss_dssp ------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------CCCHHHHHHHHH
T ss_pred ------HHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------------hCCCchhHHHHHH
Confidence 6667777778888888876554322 222222111 1122233456778
Q ss_pred HHHHHhCCChHHHHHHHHHc
Q psy12802 1254 ALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1254 a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|..+...|++++|+..|.++
T Consensus 164 g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888899999999999998
No 339
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.56 E-value=2e-06 Score=102.94 Aligned_cols=217 Identities=9% Similarity=-0.015 Sum_probs=138.1
Q ss_pred EEEECC-----CCCeEEEEEC-CCeEEEEEcCCCCCCceeEe-eccCCCCCEEEEEE-c-CCCC-EEEEe----------
Q psy12802 51 GLAFSP-----DSTKLAVAQS-DNIIFIYKLGDDWGDKKVIC-NKFIQQCPVTTMVW-L-ADGP-IIYGQ---------- 110 (1637)
Q Consensus 51 ~~~~sp-----d~~~la~~~~-d~~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~v~~-s-~~~~-l~~~~---------- 110 (1637)
.+..|. ||+++.+... ++.|.+.|+.+. ++.. ...+....+..+++ + |++. +++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~----~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCc----eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 355554 8998887665 456999999884 3221 12233456888888 5 8998 65553
Q ss_pred --------CCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCC---------------cEEEEEecCCCC
Q psy12802 111 --------SDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADG---------------SIVRYYVTEDAS 166 (1637)
Q Consensus 111 --------~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg---------------~i~iwd~~~~~~ 166 (1637)
.++.+.++|.++.+. .++.- .+....++++|||+++++.+.+. .|.+.|....
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~-- 241 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI-- 241 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH--
T ss_pred cccccccccCceEEEEECCCCeEEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce--
Confidence 245799999999887 33332 12456778999999999888653 2444444321
Q ss_pred cccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CC--Cce-eEEeeccCCCCCCccEEEEEECCCCCEEEEEe
Q psy12802 167 NFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SD--GRV-HRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 242 (1637)
Q Consensus 167 g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~--~~~-~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 242 (1637)
...... +..... +.|.+.| .+ ++. +..+... ....++.++|||+++++++
T Consensus 242 -----~~~v~~-----------Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg------~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 242 -----EKAIAA-----------GDYQEL----NGVKVVDGRKEASSLFTRYIPIA------NNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp -----HHHHHH-----------TCSEEE----TTEEEEECSGGGCCSSEEEEEEE------SSCCCEEECTTSSEEEEEC
T ss_pred -----eEeccC-----------CCeeEE----CcEEEEeCcccCCceeEEEEecC------CCceEEEEcCCCCEEEEeC
Confidence 000000 111111 5599999 54 555 5566543 2466899999999998887
Q ss_pred cCc--EEEEEeCCCCCc------cccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccc
Q psy12802 243 YDN--IKLFAWSPSKSV------WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 243 ~d~--i~i~~~~~~~~~------~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
... +.++|+...... ..........-......++|+|||...++...|+.|.+||+..
T Consensus 296 ~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 296 KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 655 999998853210 0000112223334688999999995456677899999999975
No 340
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.54 E-value=1.2e-05 Score=92.82 Aligned_cols=231 Identities=12% Similarity=0.033 Sum_probs=139.6
Q ss_pred EEC--CCCCeEEE-EECCCeEEEEEcCCCCCCceeEeecc------C-CCCCEEEEEEcCCCCEEEEeCC------CcEE
Q psy12802 53 AFS--PDSTKLAV-AQSDNIIFIYKLGDDWGDKKVICNKF------I-QQCPVTTMVWLADGPIIYGQSD------GKIK 116 (1637)
Q Consensus 53 ~~s--pd~~~la~-~~~d~~i~iw~~~~~~~~~~~~~~~~------~-~~~~v~~v~~s~~~~l~~~~~d------~~v~ 116 (1637)
.++ +++++|.+ +..++.|.|+|+.+.-...++..... . .......+..+|+|-++++..+ +.|.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGIL 167 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEE
Confidence 347 88888875 55778899999975422223332221 0 1123456678899843333333 6899
Q ss_pred EEEcCCCce-eeeccc--C-CcEEEEEEecCCCeEEEEe-------------------CCCcEEEEEecCCCCccccccc
Q psy12802 117 AAHVKANKT-QTLYAS--N-SFVVALCLNVRGAGVLSGH-------------------ADGSIVRYYVTEDASNFDQQQG 173 (1637)
Q Consensus 117 vwd~~~~~~-~~~~~~--~-~~v~~l~~s~~g~~l~s~~-------------------~dg~i~iwd~~~~~~g~~~~~~ 173 (1637)
+.|.++++. .+.... . ..-..+.|+|+++.+++.. .+.+|.+||+.+. +.+.
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~ 242 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIH 242 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEE
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEee
Confidence 999999988 444322 1 2234588899999888885 3689999999863 4444
Q ss_pred ccccC--CCCcEEEEe--cCC--eEE-EEe-----cCCeEEEEe-CCCc--eeEEeeccCCC--C-----------CCcc
Q psy12802 174 RVVQH--PVPPYALSW--PAG--YIL-AAG-----SDRIVTIYE-SDGR--VHRIFDYTAPH--Y-----------KERE 225 (1637)
Q Consensus 174 ~~~~~--~~~v~~~~~--~~~--~l~-~~~-----~d~~i~iwd-~~~~--~~~~~~~~~~~--~-----------~~~~ 225 (1637)
++... ...+..+.| +|+ ... ++- .+++|.+|. ..|. ..+.++..... . ....
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 44431 234556656 774 343 444 667888876 3332 22222211100 0 0234
Q ss_pred EEEEEECCCCCEEEEEecCc--EEEEEeCCCCC-cc--ccCCCcc---------cCCCcceeEEEEcCCCCEEEEEe
Q psy12802 226 FTVACSSPSGQAVVVGSYDN--IKLFAWSPSKS-VW--EEQPNKT---------IPNLYTISALSWKRDGSRIACGG 288 (1637)
Q Consensus 226 i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~-~~--~~~~~~~---------~~~~~~i~~l~~spdg~~l~~~~ 288 (1637)
...+.+||||++|.++.... |.+|++..... .. ....... ..-.+....+.+||||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 67899999999999988766 99999863321 10 0000000 00012468899999999998887
No 341
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=3.3e-07 Score=95.36 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=107.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12802 962 EEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYS 1041 (1637)
Q Consensus 962 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 1041 (1637)
...|..+...|++++|+.+|.++... +|+ .+.++..+|.+|...|++++|+..|.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~P~-~~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE------------------------LQS-RGDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH------------------------HHT-SHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------------------------CCC-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46777888888888888887776543 555 77889999999999999999999999
Q ss_pred hccCHH---HH----HHH-HHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHH
Q psy12802 1042 HCDMHE---QI----VDM-YHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMF 1112 (1637)
Q Consensus 1042 ~~~~~~---~~----~~~-y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~ 1112 (1637)
++.... .. ..+ +.+.+...+|+..+++... .|..+.++..+|..+...|++++|+..|.++-.
T Consensus 65 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------- 136 (176)
T 2r5s_A 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-------- 136 (176)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------
T ss_pred HhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------
Confidence 986542 11 001 1122222335666555432 356678889999999999999999888665311
Q ss_pred HhcCCHHHHHHHHHhhCCC-chHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1113 KNQRQYENMIKLVRNYHPD-LLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1113 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
..|+ ....++..+|..+...|++++|+..|.++
T Consensus 137 ---------------~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 137 ---------------VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp ---------------TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred ---------------hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 1221 22457889999999999999999999876
No 342
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.52 E-value=9.4e-07 Score=103.24 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=161.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h-------~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
..+.++...++|.+++ ++.+ |..+|. +++. ........+. +..|.+++.++.|..+|.. + ..
T Consensus 60 ~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g---~~- 128 (330)
T 3hxj_A 60 IIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G---TE- 128 (330)
T ss_dssp EEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S---CE-
T ss_pred CcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C---CE-
Confidence 3456777777776444 3333 888885 4331 1122233333 5567778888999999876 3 12
Q ss_pred EeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecC
Q psy12802 85 ICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTE 163 (1637)
Q Consensus 85 ~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 163 (1637)
......+...+.++...+++.+..++.++.|..+|.. ++. .........+.++...++|...+ ++ +.|..+| .+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PD 203 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TT
T ss_pred EEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CC
Confidence 2222223444566677777888888888999999999 665 44444455667777777887544 44 7888998 43
Q ss_pred CCCcccccccccccCCCCcEEEEecCC-eEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEe
Q psy12802 164 DASNFDQQQGRVVQHPVPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 242 (1637)
Q Consensus 164 ~~~g~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 242 (1637)
| ............+.++..+++ .+.+++.++.+..+|.+|+.+..+..... .+.++.+.++|. |.+++
T Consensus 204 ---g--~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~g~-l~v~t 272 (330)
T 3hxj_A 204 ---G--TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKR-----IESSPVIGNTDT-IYFGS 272 (330)
T ss_dssp ---S--CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSC-----CCSCCEECTTSC-EEEEC
T ss_pred ---C--cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCC-----ccccceEcCCCe-EEEec
Confidence 2 344444444566778888764 88889989999999988888877664321 233455566665 55566
Q ss_pred cCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 243 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 243 ~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
.++ +..+|. .+...|.... ....+.++...++|. |..++.+|.+.+....
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~-----~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFET-----GSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEEC-----SSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred CCCCEEEECC-CCcEEEEEEc-----CCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 664 888774 3343443221 223566777777777 6668999999887763
No 343
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.52 E-value=9.7e-06 Score=93.49 Aligned_cols=190 Identities=12% Similarity=0.119 Sum_probs=124.4
Q ss_pred EEc--CCCC--EEEEeCCCcEEEEEcCCC----ce-eeec------cc-CCcEEEEEEecCCCeEEEEeCC------CcE
Q psy12802 99 VWL--ADGP--IIYGQSDGKIKAAHVKAN----KT-QTLY------AS-NSFVVALCLNVRGAGVLSGHAD------GSI 156 (1637)
Q Consensus 99 ~~s--~~~~--l~~~~~d~~v~vwd~~~~----~~-~~~~------~~-~~~v~~l~~s~~g~~l~s~~~d------g~i 156 (1637)
.++ ++++ ++.+..+++|.++|+.+. +. .++. .+ ......+..+|+| .++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 7788 556778899999999866 33 3331 11 2246678889999 77766655 789
Q ss_pred EEEEecCCCCcccccccccccC---CCCcEEEEecCC--eEEEEe-------------------cCCeEEEEe-CCCcee
Q psy12802 157 VRYYVTEDASNFDQQQGRVVQH---PVPPYALSWPAG--YILAAG-------------------SDRIVTIYE-SDGRVH 211 (1637)
Q Consensus 157 ~iwd~~~~~~g~~~~~~~~~~~---~~~v~~~~~~~~--~l~~~~-------------------~d~~i~iwd-~~~~~~ 211 (1637)
.++|..+. +.+.++... ....+.+.|+|+ .++++. .+.+|.+|| .+++.+
T Consensus 167 ~vlD~~T~-----~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 167 LMLDHYSF-----EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp EEECTTTC-----CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred EEEECCCC-----eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 99998863 555555422 223456888884 555553 378999999 677888
Q ss_pred EEeeccCCCCCCccEEEEEE--CCCCCEEEEEec-----Cc--EEEEEeCCCCCccccCCCc---------cc-------
Q psy12802 212 RIFDYTAPHYKEREFTVACS--SPSGQAVVVGSY-----DN--IKLFAWSPSKSVWEEQPNK---------TI------- 266 (1637)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~--sp~g~~l~~~~~-----d~--i~i~~~~~~~~~~~~~~~~---------~~------- 266 (1637)
+++.... .......+.| +|+|+++.+++. .. |.+|.++. +.|...... .+
T Consensus 242 ~tI~vg~---~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 242 HSLTLGE---ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp EEEESCT---TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred eEEecCC---CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCcccccccccccccc
Confidence 8887531 1123444545 999999988876 44 77766654 223211110 00
Q ss_pred CC-CcceeEEEEcCCCCEEEEEec-CCcEEEEEcc
Q psy12802 267 PN-LYTISALSWKRDGSRIACGGL-CGSVELFESV 299 (1637)
Q Consensus 267 ~~-~~~i~~l~~spdg~~l~~~~~-dg~v~iwd~~ 299 (1637)
.. ...+..+.+||||++|.++.. .+.|.+||+.
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 00 235788999999999877664 7899999985
No 344
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=4.4e-06 Score=95.32 Aligned_cols=179 Identities=11% Similarity=-0.007 Sum_probs=113.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCC
Q psy12802 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940 (1637)
Q Consensus 861 ~~~~~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~ 940 (1637)
...+...|+|++|+.+|.+.... .+..+... .++..+ ...+.++...++++.|+..|.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~------------~~~~~~~~-~~~~~~------~~l~~~~~~~~~~~~Ai~~~~--- 139 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKK------------EEYHPEFQ-QFLQWQ------YYVAAYVLKKVDYEYCILELK--- 139 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT------------CCCCHHHH-HHHHHH------HHHHHHHTTSSCHHHHHHHHH---
T ss_pred HHHHHHHhhHHHHHHHHHHHhcc------------ccCChHHH-HHHHHH------HHHHHHHHcccCHHHHHHHHH---
Confidence 44567788888888888876221 11222221 111111 111333334444555555544
Q ss_pred ChHHHHHHHHHhCC-CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhh-ccccchHH
Q psy12802 941 VYDKCIDLTRKINP-KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVI-TNKQDIAQ 1018 (1637)
Q Consensus 941 ~~~~A~~l~~~~~~-~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~-~~~~~~~~ 1018 (1637)
+|+.+...... .....++..+|.++...|+|++|+.+|.++. ++++.. ..+.....
T Consensus 140 ---~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 140 ---KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL-------------------KQLEALHDNEEFDVK 197 (293)
T ss_dssp ---HHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHHHHSSCCHHHHHH
T ss_pred ---HHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHHhcccchhHHHH
Confidence 44442222111 1123467889999999999999999987753 333333 22222566
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcC-CHHHHHH
Q psy12802 1019 HVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEEN-KFKEAER 1097 (1637)
Q Consensus 1019 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~ 1097 (1637)
++.++|.+|...|+|++|+.+|.++ +++..+.........++..+|.+|..+| .+++|++
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~a-------------------l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKA-------------------IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-------------------HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 8999999999999999999998764 4455554445566899999999999999 4799999
Q ss_pred HHHHh
Q psy12802 1098 LYLII 1102 (1637)
Q Consensus 1098 ~y~~~ 1102 (1637)
.|.++
T Consensus 259 ~~~~A 263 (293)
T 3u3w_A 259 AYKKA 263 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 96663
No 345
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.50 E-value=6.2e-07 Score=101.77 Aligned_cols=157 Identities=14% Similarity=0.047 Sum_probs=120.2
Q ss_pred ChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 956 NVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 956 ~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
........+|..+...|++++|+.+|.++... +|+ .+.++..+|..|...|++++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~P~-~~~a~~~la~~~~~~g~~~~ 169 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL------------------------SNQ-NGEIGLLLAETLIALNRSED 169 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------TTS-CHHHHHHHHHHHHHTTCHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------------CCc-chhHHHHHHHHHHHCCCHHH
Confidence 34445568899999999999999988775332 565 78899999999999999999
Q ss_pred HHHHHHhccCHH--------HHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCch
Q psy12802 1036 AEKIYSHCDMHE--------QIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPD 1106 (1637)
Q Consensus 1036 A~~~~~~~~~~~--------~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~ 1106 (1637)
|+.+|.++.... .+.-.+.+.++.++|++.+++... .|....+++.+|..|..+|++++|+..|.++
T Consensus 170 A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~---- 245 (287)
T 3qou_A 170 AEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH---- 245 (287)
T ss_dssp HHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH----
Confidence 999999986431 123335566677777777766432 4667888999999999999999998886662
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC-CchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1107 LAISMFKNQRQYENMIKLVRNYHP-DLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1107 ~ai~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+.. .| .....++..++..+...|+.++|...|.++
T Consensus 246 ------------------l~~-~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 246 ------------------LRX-DLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp ------------------HHH-CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------Hhc-ccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 221 22 222578899999999999999999999887
No 346
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=2e-07 Score=93.02 Aligned_cols=113 Identities=7% Similarity=0.040 Sum_probs=89.4
Q ss_pred HHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc
Q psy12802 935 CYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ 1014 (1637)
Q Consensus 935 ~y~~~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~ 1014 (1637)
....++.+.+++++ .|+....+..+|..+...|++++|+.+|.++... +|.
T Consensus 18 ~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------------~P~ 68 (151)
T 3gyz_A 18 AINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------------------------DFY 68 (151)
T ss_dssp HHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT
T ss_pred HHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC
Confidence 33445555555542 3445556778999999999999999999876433 666
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHH
Q psy12802 1015 DIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKE 1094 (1637)
Q Consensus 1015 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 1094 (1637)
.+.+|..+|.+|...|++++|+.+|.++...+ |..+.+++.+|.+|..+|++++
T Consensus 69 -~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------------------------P~~~~~~~~lg~~~~~lg~~~e 122 (151)
T 3gyz_A 69 -NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------------------------KNDYTPVFHTGQCQLRLKAPLK 122 (151)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------------SSCCHHHHHHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------------------------CCCcHHHHHHHHHHHHcCCHHH
Confidence 78899999999999999999999998875433 4557889999999999999999
Q ss_pred HHHHHHHh
Q psy12802 1095 AERLYLII 1102 (1637)
Q Consensus 1095 A~~~y~~~ 1102 (1637)
|+..|.++
T Consensus 123 A~~~~~~a 130 (151)
T 3gyz_A 123 AKECFELV 130 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998774
No 347
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.48 E-value=1.7e-06 Score=110.55 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=125.4
Q ss_pred CCCEEEEeCCCcEEEEEcCCCce-eeecccCC-----------cEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccc
Q psy12802 103 DGPIIYGQSDGKIKAAHVKANKT-QTLYASNS-----------FVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQ 170 (1637)
Q Consensus 103 ~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~-----------~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~ 170 (1637)
++.+++++.++.|..+|..+|+. -....... ....+++ ++..+++++.|+.|..+|..+. +
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG-----~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATG-----K 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC-----C
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCC-----C
Confidence 45577778889999999999987 22221110 0112222 4667888999999999999874 4
Q ss_pred cccccccC-C----CCc-EEEEecCCeEEEEec------CCeEEEEe-CCCceeEEeeccCCCC----------------
Q psy12802 171 QQGRVVQH-P----VPP-YALSWPAGYILAAGS------DRIVTIYE-SDGRVHRIFDYTAPHY---------------- 221 (1637)
Q Consensus 171 ~~~~~~~~-~----~~v-~~~~~~~~~l~~~~~------d~~i~iwd-~~~~~~~~~~~~~~~~---------------- 221 (1637)
.+.+...+ . ..+ .......+.+++++. ++.|..|| .+|+.+.++.......
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 43333322 1 111 111223466777654 69999999 8999998877532200
Q ss_pred -----------CCccEEEEEECCCCCEEEEEecCc--------------------EEEEEeCCCCCccccCCCccc----
Q psy12802 222 -----------KEREFTVACSSPSGQAVVVGSYDN--------------------IKLFAWSPSKSVWEEQPNKTI---- 266 (1637)
Q Consensus 222 -----------~~~~i~~~~~sp~g~~l~~~~~d~--------------------i~i~~~~~~~~~~~~~~~~~~---- 266 (1637)
.......++++|++..+++++.++ |..+|..+++..|........
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 000113578899999998887653 777788888877865432211
Q ss_pred CCCcceeEEEEcCCC---CEEEEEecCCcEEEEEccccceeeeC
Q psy12802 267 PNLYTISALSWKRDG---SRIACGGLCGSVELFESVLKRTIWKG 307 (1637)
Q Consensus 267 ~~~~~i~~l~~spdg---~~l~~~~~dg~v~iwd~~~~~~~~~~ 307 (1637)
.......-+....+| ..+++++.+|.|+++|..+++.++..
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 111223333444577 67899999999999999999887653
No 348
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=8e-07 Score=85.97 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHH
Q psy12802 1131 DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVR 1210 (1637)
Q Consensus 1131 ~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 1210 (1637)
|..+.++..+|..|.++|+|++|+++|.++ +-..+.+..++..+|..+.+.|++++|++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~a---------------------l~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 68 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEA---------------------VKRDPENAILYSNRAACLTKLMEFQRALD 68 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHhhHHHhhccHHHHHH
Confidence 455788999999999999999999999998 55566777788889999999998888888
Q ss_pred HHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1211 LLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1211 ~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.|.++ ++ ..|..+.+|+.+|..|...|++++|++.|.++
T Consensus 69 ~~~~a-------------------l~-----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 69 DCDTC-------------------IR-----LDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHH-------------------HH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH-------------------HH-----hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88654 11 25667889999999999999999999999998
No 349
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.45 E-value=7.9e-07 Score=95.61 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=95.1
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCH------HHHHHHHHHcC----CHHHHHHHHHhhcChh
Q psy12802 1004 VQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMH------EQIVDMYHQTG----QWEKAYAIAEQHLNVG 1073 (1637)
Q Consensus 1004 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~y~~~g----~~~~A~~~~~~~~~~~ 1073 (1637)
++++++..+.. .+.++..||..|...+++++|+++|+++.+. ..+..+|.. + ++++|++.+++..+ +
T Consensus 6 ~~~~~~aa~~g-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~ 82 (212)
T 3rjv_A 6 GSQYQQQAEAG-DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A 82 (212)
T ss_dssp THHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C
Confidence 33444433444 6778999999999999999999999887321 112223333 3 34444444443321 1
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCc----hHHHHHHHHHHHH
Q psy12802 1074 EIKATFIQKCKQLEE----ENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDL----LDTTLLHLAQECE 1145 (1637)
Q Consensus 1074 ~~~~~~~~~a~~~~~----~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~la~~~~ 1145 (1637)
..+..++.+|..|.. .++ +++|+.++++..... .+.++..||..|.
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d--------------------------~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATD--------------------------VAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCC--------------------------HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCccC--------------------------HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 223344444444443 344 444444444433322 2677888888888
Q ss_pred H----ccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhc------CcchHHHHHHHh
Q psy12802 1146 E----SKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSL------GGDSAVRLLNRL 1215 (1637)
Q Consensus 1146 ~----~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~ 1215 (1637)
. .+++++|+.+|.++ +.. .+++.+...++..|.... ++++|+++|.++
T Consensus 137 ~g~g~~~d~~~A~~~~~~A---------------------~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGS---------------------SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHH---------------------HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH---------------------HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 8 78888888888887 111 345556778888876642 567777777664
No 350
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=5.9e-07 Score=89.57 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=82.7
Q ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCC
Q psy12802 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENK 1091 (1637)
Q Consensus 1012 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 1091 (1637)
+|+ .+..+..+|..+...|++++|+.+|.++...+ |..+..+..+|.+|..+|+
T Consensus 32 ~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------------------------P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 32 PDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------------------------FYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTC
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHHcc
Confidence 455 78889999999999999999999998764332 5668899999999999999
Q ss_pred HHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1092 FKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1092 ~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
|++|+..|.++ ++ ..|+ .+.+|..+|.+|...|++++|+..|.++
T Consensus 86 ~~~Ai~~~~~a-------------------l~----l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 86 FQQAADLYAVA-------------------FA----LGKN-DYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHHHHH-------------------HH----HSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------Hh----hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987663 11 2332 3578999999999999999999999998
No 351
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.44 E-value=1.5e-06 Score=90.35 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy12802 1019 HVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERL 1098 (1637)
Q Consensus 1019 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 1098 (1637)
.+..+|..+...|++++|+..|+++...+ |..+.++..+|.++..+|++++|+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------------------P~~~~a~~~la~~~~~~g~~~~A~~~ 62 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-------------------------QSRGDVKLAKADCLLETKQFELAQEL 62 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-------------------------HTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------------CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46677888888888888888888775433 44456677777777777777777777
Q ss_pred HHHhCCch---HHHHH-----HHhcCCHHHHHHHHHhhC--CCchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHH
Q psy12802 1099 YLIIGEPD---LAISM-----FKNQRQYENMIKLVRNYH--PDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIK 1168 (1637)
Q Consensus 1099 y~~~~~~~---~ai~~-----~~~~~~~~~a~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~ 1168 (1637)
|.++...+ ....+ +...+...+++..+++.. .+....++..+|..+...|++++|+..|.++
T Consensus 63 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------- 134 (176)
T 2r5s_A 63 LATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI-------- 134 (176)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------
T ss_pred HHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH--------
Confidence 76643321 11000 111111122344444321 1334678899999999999999999999887
Q ss_pred HHHhcCCHHHHHHHHHhcC--CccchHHHHHHHHHhcCcchHHHHHHHh
Q psy12802 1169 MYRSLNLWEDAYRIALSNG--GQEAVEPVVYLWAKSLGGDSAVRLLNRL 1215 (1637)
Q Consensus 1169 ~y~~~g~~~~A~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 1215 (1637)
+...+. +..++..++..+...|+.++|+..|.+.
T Consensus 135 -------------l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 135 -------------LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp -------------HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -------------HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 333322 2346788888999999999998888754
No 352
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=98.44 E-value=6.6e-06 Score=81.20 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=95.6
Q ss_pred HHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy12802 991 LDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHL 1070 (1637)
Q Consensus 991 i~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~ 1070 (1637)
.+++++.|+++.|.++++.+.. ...|.+||+....+|+++-|+++|.++++++.+.=+|.-.|+-++..++++...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566778888888888887754 448999999999999999999999999999999999999988877666554432
Q ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhh
Q psy12802 1071 NVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNY 1128 (1637)
Q Consensus 1071 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~ 1128 (1637)
.+.. +......+..+|++++++++|.+.+++.+|+.+....|--+.|.++++..
T Consensus 88 ~~g~----~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 88 TRED----FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HTTC----HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HCcc----HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHh
Confidence 2111 12222345566777777777777777777777777777766666666654
No 353
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.43 E-value=4e-06 Score=95.04 Aligned_cols=166 Identities=16% Similarity=0.061 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc--------cCHHHHHHHHHhcCCHHHHHHHHHhcCCc
Q psy12802 1118 YENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC--------NEWKLAIKMYRSLNLWEDAYRIALSNGGQ 1189 (1637)
Q Consensus 1118 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a--------~~~~~~~~~y~~~g~~~~A~~~~~~~~~~ 1189 (1637)
.+...+.+....|+ ..+.+..+|..+...|++++|+..|.++ .-+..++.+|...|++++|...+++....
T Consensus 102 ~~~l~~~l~~~lp~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPR-EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCC-chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34555566666554 3577889999999999999999999998 11344455555555555555555543221
Q ss_pred c-----chHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChH
Q psy12802 1190 E-----AVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFN 1264 (1637)
Q Consensus 1190 ~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~ 1264 (1637)
. .....+..+...+..++|+..|.++ ....|..+++++.+|..|...|+++
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a------------------------l~~~P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQ------------------------VAENPEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHH------------------------HhcCCccHHHHHHHHHHHHHcccHH
Confidence 1 1122222233334444444433322 1236778899999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCC-hHHHHHHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1265 EAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTS-IGDILLNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1265 ~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
+|+..|.++ ...+|.. .+.++..++..+...|+.++|...|.++
T Consensus 237 ~A~~~l~~~-----------------------l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 237 EALELLFGH-----------------------LRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH-----------------------HHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHH-----------------------HhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999987 3334552 3678899999999999999988877654
No 354
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.42 E-value=6.6e-08 Score=114.19 Aligned_cols=181 Identities=14% Similarity=0.139 Sum_probs=101.2
Q ss_pred CCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCC
Q psy12802 103 DGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPV 180 (1637)
Q Consensus 103 ~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~ 180 (1637)
++. +++++.|+.|..||..+|+. ..+.. +.+.+..+.+++..+++++.||.|+.||..+. +.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG-----~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN-----EGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC----------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCC-----ceeeeeeccCc
Confidence 344 88899999999999999998 34433 45555566678888888889999999998763 33322221110
Q ss_pred -Cc-EEEEe-cCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCC
Q psy12802 181 -PP-YALSW-PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK 255 (1637)
Q Consensus 181 -~v-~~~~~-~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~ 255 (1637)
.+ .+..+ ..+.+++++.++.|..|| .+|+.+..+..+. ...++|++..+++++.++ ++.||..+++
T Consensus 81 ~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC-----CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---------cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 00 00111 235778888999999999 7899887776321 234567888999999888 9999998888
Q ss_pred CccccCCCcccCCCcceeEEEEcCCC---CEEEEEecCCcEEEEEccccceeee
Q psy12802 256 SVWEEQPNKTIPNLYTISALSWKRDG---SRIACGGLCGSVELFESVLKRTIWK 306 (1637)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~l~~spdg---~~l~~~~~dg~v~iwd~~~~~~~~~ 306 (1637)
..|..... ......+++++ ..+++++.+|.|..||..+++.++.
T Consensus 152 ~~W~~~~~-------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 152 LRWNATYF-------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp CCCEEEEE-------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred EEEeEecc-------cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 77754311 11222333332 4577889999999999988877665
No 355
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=5.4e-07 Score=87.20 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=80.0
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
|+..+.+...|..+.+.|+|++|+.+|.++... +|. .+.+|..+|.+|...|+++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~~~~~~~~~~~~~ 64 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------------------------DPE-NAILYSNRAACLTKLMEFQ 64 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC-CHHHHHHHhhHHHhhccHH
Confidence 445556678999999999999999998776332 555 7889999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+|+..|.++...+ |....+|..+|.+|..+|++++|++.|.++
T Consensus 65 ~A~~~~~~al~~~-------------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 65 RALDDCDTCIRLD-------------------------SKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-------------------------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999887764322 455778999999999999999999987763
No 356
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.41 E-value=3.8e-06 Score=100.56 Aligned_cols=218 Identities=9% Similarity=-0.029 Sum_probs=138.8
Q ss_pred CCCCEEEEEeCC-CeEEEEEcCCCC--------cccceEEEEE-C-CCCCeEEEEE------------------CCCeEE
Q psy12802 21 LDIVRLRSEGNV-AGIWAWRGQNGR--------KSYVVKGLAF-S-PDSTKLAVAQ------------------SDNIIF 71 (1637)
Q Consensus 21 pdg~~la~~~~d-~~i~vwd~~~~~--------h~~~V~~~~~-s-pd~~~la~~~------------------~d~~i~ 71 (1637)
|||+++.....+ +.|.+.|+.+.+ ....+.++++ + |+++++.+++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 399988887664 569999998866 1346789998 5 9999998884 345788
Q ss_pred EEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCCC-------------------------------------
Q psy12802 72 IYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSDG------------------------------------- 113 (1637)
Q Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~------------------------------------- 113 (1637)
+.|..+. ++....... +....++++|+|+ +++++.+.
T Consensus 179 vID~~t~----~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 179 AVDADKW----EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEETTTT----EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEECCCC----eEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 9998873 333222111 1345677999999 55555332
Q ss_pred -cEEEEEcCC--Cce-eeecccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCC---c---ccccccccccCCCCc
Q psy12802 114 -KIKAAHVKA--NKT-QTLYASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDAS---N---FDQQQGRVVQHPVPP 182 (1637)
Q Consensus 114 -~v~vwd~~~--~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~---g---~~~~~~~~~~~~~~v 182 (1637)
.|.|.|..+ ++. ...........++.++|||+++++++ .+.+|.++|+.+... | ....+..-..-...+
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 367777776 433 22222334567899999999977766 488999999985210 0 000111112345678
Q ss_pred EEEEecCC-e-EEEEecCCeEEEEe-CC----------CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEec
Q psy12802 183 YALSWPAG-Y-ILAAGSDRIVTIYE-SD----------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY 243 (1637)
Q Consensus 183 ~~~~~~~~-~-l~~~~~d~~i~iwd-~~----------~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 243 (1637)
..++|+|+ . .++...|+.|.+|| .. .+.+.+++.+-.++|...-..+.++|||++|++...
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 99999984 3 34566799999999 33 467777775422011111112346899999988753
No 357
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.41 E-value=0.00012 Score=83.92 Aligned_cols=223 Identities=13% Similarity=0.019 Sum_probs=136.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----cccceEEEEECCCCCeEEEEECCC--eEEEEEcCCCCCCcee
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-----KSYVVKGLAFSPDSTKLAVAQSDN--IIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-----h~~~V~~~~~spd~~~la~~~~d~--~i~iw~~~~~~~~~~~ 84 (1637)
.....++|+|+|+++++...++.|+.||..+.. ....+.+++++|+|+.+++....+ .|..++..++ ....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g--~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG--TVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS--CEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC--eEEE
Confidence 456789999999987777778899999876432 234678999999999655544332 3555665553 2222
Q ss_pred EeeccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce--eee---------cccCCcEEEEEEecCCCeEEEEe-
Q psy12802 85 ICNKFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT--QTL---------YASNSFVVALCLNVRGAGVLSGH- 151 (1637)
Q Consensus 85 ~~~~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~--~~~---------~~~~~~v~~l~~s~~g~~l~s~~- 151 (1637)
+... ........++..+++. +++-..++.|.++|..+++. ... .........+ +|++..|.++.
T Consensus 110 ~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 2221 2223345566566666 55555688999999876532 110 1112345566 88887766555
Q ss_pred CCCcEEEEEecCCCCcccccccccccCCCCcEEEEecCC-eEE-EEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEE
Q psy12802 152 ADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG-YIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVA 229 (1637)
Q Consensus 152 ~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~-~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 229 (1637)
..+.|.++++...+.- .....+. ....+..++++++ .++ +....+.|.++|.+|+........ ......+++
T Consensus 187 ~~~~I~~~~~~~~g~~--~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~---~~~~~p~~~ 260 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKP--GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE---QGVIGSTAV 260 (306)
T ss_dssp TTTEEEEEEBCTTSCB--CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG---GTCTTEEEE
T ss_pred CCCEEEEEEeCCCCCC--CccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecc---cccCCceEE
Confidence 5788999998742110 1111111 1245667888763 444 444578999999878764322211 122468999
Q ss_pred EEC---CCCCEEEEEecCc
Q psy12802 230 CSS---PSGQAVVVGSYDN 245 (1637)
Q Consensus 230 ~~s---p~g~~l~~~~~d~ 245 (1637)
+|. |+++.|.+++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 999 8988877776544
No 358
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=1.6e-06 Score=84.05 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
..+..+|..+...|+|++|+.+|.++... +|+ .+.+|..+|.+|...|++++|++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~------------------------~p~-~~~~~~nlg~~~~~~~~~~~A~~ 63 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL------------------------DPS-NITFYNNKAAVYFEEKKFAECVQ 63 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC-CHHHHHhHHHHHHHhhhHHHHHH
Confidence 34568999999999999999999775332 565 78899999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhc-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHL-NVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
.|.++.... .... .......+|.++|..+..+|++++|++.|.++
T Consensus 64 ~~~~al~~~-------------------~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 64 FCEKAVEVG-------------------RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHH-------------------HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-------------------cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998764332 2221 12344678999999999999999999998774
No 359
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=1.2e-05 Score=81.97 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=94.7
Q ss_pred HHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCC-CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCH
Q psy12802 922 IYEFTNENEKALECYRKGKVYDKCIDLTRKINP-KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQW 1000 (1637)
Q Consensus 922 ~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~-~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~ 1000 (1637)
+|...|+++.|+..|. +|+++...... .........+|..+...|++++|+.+|.++
T Consensus 18 ~~~~~~~~~~A~~~~~------~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------- 75 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHE------QRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT---------------- 75 (164)
T ss_dssp HHHHTTCHHHHHHHHH------HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHhcCHHHHHHHHH------HHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------
Confidence 3344444444444444 55555554322 223346678999999999999999987664
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHH
Q psy12802 1001 KKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFI 1080 (1637)
Q Consensus 1001 ~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~ 1080 (1637)
+++.+...++.....++..+|..+...|++++|++.|.++ +++.+...+.+.....+.
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-------------------~~~~~~~~~~~~~~~~~~ 133 (164)
T 3ro3_A 76 ---LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-------------------LAIAQELKDRIGEGRACW 133 (164)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------------------HHHHHHccchHhHHHHHH
Confidence 3333333333334667899999999999999999988764 444444444556678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1081 QKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1081 ~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
.+|..+...|++++|+++|.++
T Consensus 134 ~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 134 SLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999997663
No 360
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.35 E-value=0.00016 Score=80.78 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=141.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCc------------ccceEEEEECCCCCeEEEEE-CCCeEEEEEcCCCCCCceeEeeccC
Q psy12802 24 VRLRSEGNVAGIWAWRGQNGRK------------SYVVKGLAFSPDSTKLAVAQ-SDNIIFIYKLGDDWGDKKVICNKFI 90 (1637)
Q Consensus 24 ~~la~~~~d~~i~vwd~~~~~h------------~~~V~~~~~spd~~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~ 90 (1637)
.+|..+.. +.|+.+++..... ...+.+++|+|++..|..+. .++.|..++..+.. ...+. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~--~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTII--RQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEE--CT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--cEEEE--EC
Confidence 34555443 4788888765432 12356899999877776554 56889999987531 11111 12
Q ss_pred CCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCceeeecc-cCCcEEEEEEecCCCeEEEEeC---CCcEEEEEecCC
Q psy12802 91 QQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKTQTLYA-SNSFVVALCLNVRGAGVLSGHA---DGSIVRYYVTED 164 (1637)
Q Consensus 91 ~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~l~~s~~g~~l~s~~~---dg~i~iwd~~~~ 164 (1637)
......+++++|++. +++-...+.|.+++..+.....+.. .......++++|++..|..+.. .+.|..+++..
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg- 155 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG- 155 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-
Confidence 235678999999765 4555567899999998655433332 2256789999997666655554 36788888763
Q ss_pred CCcccccccccc-cCCCCcEEEEecC--CeEE-EEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEE
Q psy12802 165 ASNFDQQQGRVV-QHPVPPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV 240 (1637)
Q Consensus 165 ~~g~~~~~~~~~-~~~~~v~~~~~~~--~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 240 (1637)
.....+. .....+..+++++ +.+. +-...+.|.++|.++.....+... ......++.. +..+.+
T Consensus 156 -----~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-----~~~P~gi~~d--~~~lyv 223 (267)
T 1npe_A 156 -----TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-----LQYPFAVTSY--GKNLYY 223 (267)
T ss_dssp -----CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-----CCSEEEEEEE--TTEEEE
T ss_pred -----CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-----CCCceEEEEe--CCEEEE
Confidence 2222221 2335688999987 3454 445568999999766544443211 1234456553 556666
Q ss_pred EecC-c-EEEEEeCCCCCccccCCCcccC--CCcceeEEEEcCCCC
Q psy12802 241 GSYD-N-IKLFAWSPSKSVWEEQPNKTIP--NLYTISALSWKRDGS 282 (1637)
Q Consensus 241 ~~~d-~-i~i~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~spdg~ 282 (1637)
+... + |..++..+++.. ..+. .......+++.|++.
T Consensus 224 a~~~~~~v~~~d~~~g~~~------~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 224 TDWKTNSVIAMDLAISKEM------DTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEETTTTEEE------EEECCSSCCCCCCEEEECSCC
T ss_pred EECCCCeEEEEeCCCCCce------EEEccccccccceeeecCccC
Confidence 6544 3 777776654322 1111 112356777777764
No 361
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=2.4e-06 Score=82.76 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
....+..+|..+.+.|+|++|++.|.++... .|....+|.++|.+|..+|+|++|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------------------------~p~~~~~~~nlg~~~~~~~~~~~A 61 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------------------------DPSNITFYNNKAAVYFEEKKFAEC 61 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCCHHHHHhHHHHHHHhhhHHHH
Confidence 4557889999999999999999999876422 255678899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCC--CchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHP--DLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
++.|.++ +++-....+ .....+|..+|..+...|+|++|+++|.++
T Consensus 62 ~~~~~~a-------------------l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 62 VQFCEKA-------------------VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHH-------------------HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9986653 222222222 223568899999999999999999999987
No 362
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.33 E-value=0.00019 Score=80.23 Aligned_cols=210 Identities=10% Similarity=0.032 Sum_probs=137.2
Q ss_pred ceeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCc-------ccceEEEEECCCCCeEEEEE-CCCeEEEEEcCCCCCCce
Q psy12802 13 VLQDDVFNLDIVRLRSE-GNVAGIWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVAQ-SDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~-~~d~~i~vwd~~~~~h-------~~~V~~~~~spd~~~la~~~-~d~~i~iw~~~~~~~~~~ 83 (1637)
.+..++|+|++..|..+ ...+.|..++..++.. .....+++++|++..|.++. ..+.|.+++.... ..+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~--~~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT--QRR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC--CEE
Confidence 34689999976655554 4567899999876531 24678999999877666554 5678999998653 122
Q ss_pred eEeeccCCCCCEEEEEEcCCCC-EEEEeC---CCcEEEEEcCCCceeeec-ccCCcEEEEEEecCCCeEEEEe-CCCcEE
Q psy12802 84 VICNKFIQQCPVTTMVWLADGP-IIYGQS---DGKIKAAHVKANKTQTLY-ASNSFVVALCLNVRGAGVLSGH-ADGSIV 157 (1637)
Q Consensus 84 ~~~~~~~~~~~v~~v~~s~~~~-l~~~~~---d~~v~vwd~~~~~~~~~~-~~~~~v~~l~~s~~g~~l~s~~-~dg~i~ 157 (1637)
.+.. ........++++|++. ++.+.. .+.|..+++.+.....+. ........++++|++..|..+. ..+.|.
T Consensus 115 ~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEE--CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 2211 1224578999999655 544443 468888888765443332 3335688999999887765555 467899
Q ss_pred EEEecCCCCcccccccccccCCCCcEEEEecCCeEEEEe-cCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCC
Q psy12802 158 RYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAG-SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG 235 (1637)
Q Consensus 158 iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 235 (1637)
+++.... ....+......+..++...+.++.+. .++.|.++| .+|+.+..+... .......+++.|++
T Consensus 193 ~~~~~g~------~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g----~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 193 CLNPAQP------GRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH----KQTRLYGITIALSQ 262 (267)
T ss_dssp EEETTEE------EEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCS----SCCCCCCEEEECSC
T ss_pred EEecCCC------ceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccc----cccccceeeecCcc
Confidence 9998642 22222223345667777666555554 568999999 568888887642 11235667777776
Q ss_pred C
Q psy12802 236 Q 236 (1637)
Q Consensus 236 ~ 236 (1637)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
No 363
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.32 E-value=9.3e-06 Score=97.91 Aligned_cols=141 Identities=9% Similarity=0.032 Sum_probs=105.2
Q ss_pred HHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12802 964 WGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKDYKTAEKIYS 1041 (1637)
Q Consensus 964 ~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 1041 (1637)
.+..+..+|+|++|+.+|+++ +++.+....++ ....++++||..|..+|+|++|+.+|+
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~a-------------------L~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCREC-------------------LEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-------------------HHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH-------------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334566788888888887654 33444433322 256679999999999999999999997
Q ss_pred hccCHHHHHHHHHHcCCHHHHHHHHHhhc--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHH
Q psy12802 1042 HCDMHEQIVDMYHQTGQWEKAYAIAEQHL--NVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYE 1119 (1637)
Q Consensus 1042 ~~~~~~~~~~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~ 1119 (1637)
++ +++.++.. +.|.....++++|.+|..+|+|++|+.+|.++
T Consensus 376 ~a-------------------L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A----------------- 419 (490)
T 3n71_A 376 RM-------------------VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA----------------- 419 (490)
T ss_dssp HH-------------------HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HH-------------------HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 64 44444432 35788999999999999999999999996653
Q ss_pred HHHHHHHhhCC---CchHHHHHHHHHHHHHccCHHHHHHHHHHcc
Q psy12802 1120 NMIKLVRNYHP---DLLDTTLLHLAQECEESKNYKQAEKYYLDCN 1161 (1637)
Q Consensus 1120 ~a~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~ 1161 (1637)
+.+.+.... +...++...+++.+.++++|++|+..|.+|.
T Consensus 420 --l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 420 --YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp --HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333 2345677889999999999999999999983
No 364
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=2.1e-06 Score=96.95 Aligned_cols=95 Identities=16% Similarity=0.058 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
......+|..+...|+|++|+.+|.++... .|+ .+.++..+|.+|...|++++|+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR------------------------NPL-VAVYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CSC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCc-cHHHHHHHHHHHHHhcCHHHHH
Confidence 345567888999999999999888765332 454 6788999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
..|.++...+ |....+++.+|..|..+|++++|+..|.++
T Consensus 59 ~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 59 ADCRRALELD-------------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHTTSC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9888876542 445678889999999999999999998884
No 365
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.31 E-value=3.2e-06 Score=107.07 Aligned_cols=99 Identities=14% Similarity=-0.006 Sum_probs=65.5
Q ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCC
Q psy12802 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENK 1091 (1637)
Q Consensus 1012 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 1091 (1637)
+|+ ...++..+|..|...|++++|++.|.++...+ +....++..+|..|..+|+
T Consensus 19 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 19 RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------------------------PGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp --C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------------------------TTCHHHHHHHHHHHHHTTC
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHCCC
Confidence 444 67789999999999999999999998875432 3335566677777777777
Q ss_pred HHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1092 FKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1092 ~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+++|++.|.++- + ..| ....++..+|..|...|++++|+++|.++
T Consensus 73 ~~~A~~~~~~al-------------------~----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 73 HAEAAVLLQQAS-------------------D----AAP-EHPGIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp HHHHHHHHHHHH-------------------H----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------h----cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777776655421 1 112 12455666666666666666666666665
No 366
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.31 E-value=7.5e-06 Score=98.69 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=101.6
Q ss_pred HHHcCCHHHHHHHHHhCCChHHHHHHHHHhC---CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccC
Q psy12802 923 YEFTNENEKALECYRKGKVYDKCIDLTRKIN---PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQ 999 (1637)
Q Consensus 923 ~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~---~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~ 999 (1637)
+...|++++|+.+|. +++++.++.. ++.+...+.++|.+|..+|+|++|+.+|+++
T Consensus 319 ~~~qg~~~eA~~l~~------~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a--------------- 377 (490)
T 3n71_A 319 ARSEGLYHEVVKLCR------ECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM--------------- 377 (490)
T ss_dssp HHTTTCHHHHHHHHH------HHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHhCCCHHHHHHHHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 344455555555554 6666666653 3566788899999999999999999998764
Q ss_pred HHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhh--cChhhH
Q psy12802 1000 WKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQH--LNVGEI 1075 (1637)
Q Consensus 1000 ~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~--~~~~~~ 1075 (1637)
+++.++.-.++ .....+++||..|..+|+|++|+.+|+++ +++.+.. .+.|..
T Consensus 378 ----L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A-------------------l~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 378 ----VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA-------------------YAILLVTHGPSHPIT 434 (490)
T ss_dssp ----HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHHHHHTCTTSHHH
T ss_pred ----HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------HHHHHHHhCCCChHH
Confidence 33344433332 25667999999999999999999999875 4454443 245778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1076 KATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1076 ~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
..+...++..+..+++|++|+..|.++
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999885
No 367
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.29 E-value=1.9e-05 Score=87.36 Aligned_cols=214 Identities=13% Similarity=0.037 Sum_probs=119.5
Q ss_pred CCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhc-c-ccch
Q psy12802 939 GKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVIT-N-KQDI 1016 (1637)
Q Consensus 939 ~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~-~-~~~~ 1016 (1637)
.|.|..++.-+.+..+.+......-..+.+..+|+++... ......+|+++|..-.. .+|+..+++.. . +. .
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----~~~~~~~a~~~la~~~~-~~a~~~l~~l~~~~~~-~ 99 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----PTSKLGKVLDLYVQFLD-TKNIEELENLLKDKQN-S 99 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----SSSTTHHHHHHHHHHHT-TTCCHHHHHTTTTSCC-C
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----CCCHHHHHHHHHHHHhc-ccHHHHHHHHHhcCCC-C
Confidence 4555555554444334333444445566677777765321 00112234443332111 12555565532 2 22 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhc-------cCH---HHHHHHHHHcCCHHHHHHHHHhhcChhh-----HHHHHHH
Q psy12802 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHC-------DMH---EQIVDMYHQTGQWEKAYAIAEQHLNVGE-----IKATFIQ 1081 (1637)
Q Consensus 1017 ~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~---~~~~~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~ 1081 (1637)
...+..+|.++...|++++|++++.+. +.. ..++++|.+.|+.+.|.++++++...+. ...+...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 445678999999999999999999998 222 3478999999999999999987643222 2444555
Q ss_pred HHHH--HHHcC--CHHHHHHHHHHh-CCc-h-----HHHHHHHhcCCHHHHHHHHHhhCC------------CchHHHHH
Q psy12802 1082 KCKQ--LEEEN--KFKEAERLYLII-GEP-D-----LAISMFKNQRQYENMIKLVRNYHP------------DLLDTTLL 1138 (1637)
Q Consensus 1082 ~a~~--~~~~g--~~~~A~~~y~~~-~~~-~-----~ai~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~ 1138 (1637)
++.. ....| ++.+|..+|.+. ..+ + .-..++.++|+|++|.+.++.... +..+.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 5544 44445 888888887772 111 1 112345666666666666543211 22344554
Q ss_pred HHHHHHHHccCHHHHHHHHHHc
Q psy12802 1139 HLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1139 ~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+++......|+ +|.+++.++
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHH
Confidence 44444444554 555555554
No 368
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.29 E-value=7.8e-06 Score=90.34 Aligned_cols=189 Identities=13% Similarity=0.033 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhccC-HHHHHHHHHHcCCHHHHHHHHHhhcCh-hhHHHHHHHHHHHHHHcCCHHHHH
Q psy12802 1019 HVKTLAQHFKTVKDYKTAEKIYSHCDM-HEQIVDMYHQTGQWEKAYAIAEQHLNV-GEIKATFIQKCKQLEEENKFKEAE 1096 (1637)
Q Consensus 1019 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~ 1096 (1637)
...-+.++|..+|+++... ... ...++++|..--. .+|+..+++.... +.....+..+|.++...|++++|+
T Consensus 47 ~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~~-~~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL 120 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFLD-TKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSL 120 (310)
T ss_dssp HHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHHT-TTCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHhc-ccHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 4444567777777765321 011 1123333221111 1156666654332 233455678999999999999999
Q ss_pred HHHHHh-------CCch---HHHHHHHhcCCHHHHHHHHHhhCC-Cc-----hHHHHHHHHHH--HHHcc--CHHHHHHH
Q psy12802 1097 RLYLII-------GEPD---LAISMFKNQRQYENMIKLVRNYHP-DL-----LDTTLLHLAQE--CEESK--NYKQAEKY 1156 (1637)
Q Consensus 1097 ~~y~~~-------~~~~---~ai~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~~la~~--~~~~g--~~~~A~~~ 1156 (1637)
+.+.+. +..+ .++.+|.+.|+.+.|.+.++++.. +. ...+...++.. ....| ++++|...
T Consensus 121 ~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~ 200 (310)
T 3mv2_B 121 ETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYY 200 (310)
T ss_dssp HHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHH
T ss_pred HHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 999987 2222 234679999999999999976533 11 13445555544 44445 99999999
Q ss_pred HHHc----cC---HHHHHHHHHhcCCHHHHHHHHHh---------------cCCccchHHHHHHHHHhcCcchHHHHHHH
Q psy12802 1157 YLDC----NE---WKLAIKMYRSLNLWEDAYRIALS---------------NGGQEAVEPVVYLWAKSLGGDSAVRLLNR 1214 (1637)
Q Consensus 1157 y~~a----~~---~~~~~~~y~~~g~~~~A~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 1214 (1637)
|+++ ++ ...+.+++.+.|+|++|.+.++. +.++.++.+++......|+ +|.+++.+
T Consensus 201 f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~q 278 (310)
T 3mv2_B 201 YEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQ 278 (310)
T ss_dssp HHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHH
Confidence 9998 33 33556688899999999998754 2344455455555555554 66666655
Q ss_pred h
Q psy12802 1215 L 1215 (1637)
Q Consensus 1215 ~ 1215 (1637)
+
T Consensus 279 L 279 (310)
T 3mv2_B 279 L 279 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 369
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.29 E-value=6.8e-05 Score=97.44 Aligned_cols=186 Identities=10% Similarity=0.056 Sum_probs=111.8
Q ss_pred ceeEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-Cc-c----cceEEEEECCCCCeEEEEECC-----CeEEEEEc
Q psy12802 13 VLQDDVFN-LDIVRLRSEGN-V----AGIWAWRGQNG-RK-S----YVVKGLAFSPDSTKLAVAQSD-----NIIFIYKL 75 (1637)
Q Consensus 13 ~i~~~~~s-pdg~~la~~~~-d----~~i~vwd~~~~-~h-~----~~V~~~~~spd~~~la~~~~d-----~~i~iw~~ 75 (1637)
.+..+.|| |||++||.+.. + .+|+++|+.++ +. . ....+++|||||+.|+....| ..|.++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 57789999 99999997643 2 25999999988 51 1 223468999999999877665 35777888
Q ss_pred CCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe---CCCcEEEEEcCCCc--e--eeec-ccCCcEEEEEEecCCCe
Q psy12802 76 GDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ---SDGKIKAAHVKANK--T--QTLY-ASNSFVVALCLNVRGAG 146 (1637)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~---~d~~v~vwd~~~~~--~--~~~~-~~~~~v~~l~~s~~g~~ 146 (1637)
.++......+.. ........++.|||||+ |+..+ ....|.++|+.++. . ..+. .......++.|+.++.+
T Consensus 255 gt~~~~~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 255 GKLQSEDVCLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TSCGGGCEEEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCchhcEEEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 764222223322 12334567899999999 66544 24568889998762 3 3333 33445556665544444
Q ss_pred EEEEeCC--C--cEEEEEecCCCCcccccccc-cccCCC--CcEEEEecCCeE-EEEecCCeEEEE
Q psy12802 147 VLSGHAD--G--SIVRYYVTEDASNFDQQQGR-VVQHPV--PPYALSWPAGYI-LAAGSDRIVTIY 204 (1637)
Q Consensus 147 l~s~~~d--g--~i~iwd~~~~~~g~~~~~~~-~~~~~~--~v~~~~~~~~~l-~~~~~d~~i~iw 204 (1637)
++....+ + .|..+++.+. ..... +..+.. .+..+.+..+.+ ++...++..++|
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~-----~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQP-----SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTST-----TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred EEEeCCCCCCCcEEEEEcCCCc-----ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 4444443 3 4555555431 11123 333333 345666666644 455667765544
No 370
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.28 E-value=7.4e-06 Score=87.94 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccC------HHHHHHHHHhcC----CHHHHHHHHHh---cCCccchHHHHHH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNE------WKLAIKMYRSLN----LWEDAYRIALS---NGGQEAVEPVVYL 1198 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~------~~~~~~~y~~~g----~~~~A~~~~~~---~~~~~~~~~l~~~ 1198 (1637)
..+.++..+|..|...+++++|+.+|.++-+ +..+..+|.. + ++++|++.+++ .+++.+...++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARV 94 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3467888889999889999999999888721 2333344443 3 44444444433 2333344444444
Q ss_pred HHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCc----HHHHHHHHHHHHh----CCChHHHHHHH
Q psy12802 1199 WAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKL----EEVHYKYALVLED----NGQFNEAETQF 1270 (1637)
Q Consensus 1199 ~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~----~~~~~~~a~~~~~----~g~~~~A~~~~ 1270 (1637)
|..-. .-.+++++|+.++++...... +..++.+|..|.. .+++++|+..|
T Consensus 95 y~~g~----------------------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 95 LVNRQ----------------------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HTCGG----------------------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHcCC----------------------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 43300 003445555555555554444 7888999999988 78889998888
Q ss_pred HHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHHHHhHHHHHhc-C-----ChhhHHHHHHHh
Q psy12802 1271 IKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFEN-E-----NFSKFETLLLRA 1331 (1637)
Q Consensus 1271 ~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~a~~~~~~-~-----~~~~A~~~~~~a 1331 (1637)
.++ + +. + ..+..+..++..+... | ++++|+.+|.++
T Consensus 153 ~~A------~-----------------~~-~-~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 153 KGS------S-----------------SL-S-RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHH------H-----------------HT-S-CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHH------H-----------------Hc-C-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 887 1 11 1 1245677888877653 3 788888887664
No 371
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.28 E-value=4.7e-06 Score=105.52 Aligned_cols=132 Identities=10% Similarity=-0.084 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
+.....+..+|..+...|++++|+.+|.++... .|+ ...++..+|.+|...|+++
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL------------------------HPG-HPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------------------------STT-CHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC-CHHHHHHHHHHHHHCCCHH
Confidence 445567789999999999999999998887553 555 6789999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHh
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKN 1114 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~ 1114 (1637)
+|+++|+++.... +.....+..+|..|..+|++++|++.|.++
T Consensus 75 ~A~~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------ 117 (568)
T 2vsy_A 75 EAAVLLQQASDAA-------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRA------------ 117 (568)
T ss_dssp HHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhcC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Confidence 9999988764321 344678899999999999999999886663
Q ss_pred cCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHc---cCHHHHHHHHHHc
Q psy12802 1115 QRQYENMIKLVRNYHPDLLDTTLLHLAQECEES---KNYKQAEKYYLDC 1160 (1637)
Q Consensus 1115 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~y~~a 1160 (1637)
++ ..| ....++..+|..+... |++++|...|.++
T Consensus 118 -------l~----~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 118 -------HQ----LLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp -------HH----HCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred -------HH----hCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 11 122 2357889999999999 9999999999988
No 372
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.28 E-value=0.00012 Score=79.41 Aligned_cols=193 Identities=8% Similarity=-0.054 Sum_probs=125.4
Q ss_pred ceEEEEECCCCCeEEEEEC---CCeEEEEEcCCCCCCceeEeecc-CCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC
Q psy12802 48 VVKGLAFSPDSTKLAVAQS---DNIIFIYKLGDDWGDKKVICNKF-IQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 48 ~V~~~~~spd~~~la~~~~---d~~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~ 122 (1637)
...+++|+||+ .|..++. ++.|.++|..++ +++.... +.......+++. .++ +++...++.+.++|..+
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg----~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTG----KVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTC----CEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCC----CEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence 36799999997 4554432 589999999986 3332221 122223345554 234 55566789999999999
Q ss_pred Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc--CC---CCcEEEEecCCeEEEEe
Q psy12802 123 NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ--HP---VPPYALSWPAGYILAAG 196 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~--~~---~~v~~~~~~~~~l~~~~ 196 (1637)
.+. .++..... ....+++||+.++++..++.|.++|..+. +...++.- .. ..+..+.|..+.+.+..
T Consensus 96 ~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~-----~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 96 LSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTF-----KLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp TEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTC-----CEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCC-----cEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 987 44432211 12346678988888888899999998764 33344331 11 23667888766665554
Q ss_pred -cCCeEEEEe-CCCceeEEeeccC--------CCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCC
Q psy12802 197 -SDRIVTIYE-SDGRVHRIFDYTA--------PHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSP 253 (1637)
Q Consensus 197 -~d~~i~iwd-~~~~~~~~~~~~~--------~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~ 253 (1637)
.++.|.+.| .+++.+..+.... ..........++|+|+++.+.+++... +.+.++..
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 578999999 8999999987531 001123578999999998776665444 66666554
No 373
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.27 E-value=3.7e-06 Score=102.62 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1135 TTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1135 ~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
.+|+.|...|.+.|++++|.++|.++
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34455555555555555555555544
No 374
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.26 E-value=0.0029 Score=79.40 Aligned_cols=203 Identities=12% Similarity=0.025 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHH-HHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHh
Q psy12802 1050 VDMYHQTGQWEKAY-AIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRN 1127 (1637)
Q Consensus 1050 ~~~y~~~g~~~~A~-~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~ 1127 (1637)
++.+.+.|+.++|. ++++.... .|....++..++...+..|++++|.++|.++- .... ...+.+..
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l------~~l~------~~~~~~~~ 417 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI------DRIH------LDLAALME 417 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHH------HHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH------HHHH------HHhhhhhh
Confidence 34444445544454 44443221 24456778889999999999999999877642 1110 00001111
Q ss_pred hCCC----------chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHH
Q psy12802 1128 YHPD----------LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVY 1197 (1637)
Q Consensus 1128 ~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~ 1197 (1637)
..|. ....+|...+......|..+.|...|.+|.... .......+...+.
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--------------------~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--------------------KLVTPDIYLENAY 477 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG--------------------GGSCTHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------------------CCCChHHHHHHHH
Confidence 1121 134578888888888888888888888872110 0001111111222
Q ss_pred HHHHh-cCcchHHHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCCh
Q psy12802 1198 LWAKS-LGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKP 1276 (1637)
Q Consensus 1198 ~~~~~-~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 1276 (1637)
.-.+. ++++.|.++|.+. ++. .+..+..+..++..+...|+.+.|...|.+|-
T Consensus 478 lE~~~~~d~e~Ar~ife~~-------------------Lk~-----~p~~~~~w~~y~~fe~~~~~~~~AR~lferal-- 531 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELG-------------------LKY-----FATDGEYINKYLDFLIYVNEESQVKSLFESSI-- 531 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHH-------------------HHH-----HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT--
T ss_pred HHHHhCCCHHHHHHHHHHH-------------------HHH-----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH--
Confidence 22222 2355666665433 111 24456777888888888899999999999872
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhCC--CChHHHHHHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1277 KEAISMYIHNQDWENAERIANEHDP--TSIGDILLNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1277 ~~ai~~~~~~~~~~~a~~~a~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
...| .....++.....+....|+.+.+..++.++
T Consensus 532 ---------------------~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 532 ---------------------DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp ---------------------TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred ---------------------HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 245577788888888888888887776653
No 375
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=0.00014 Score=94.64 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=110.4
Q ss_pred ceEEEEEC-CCCCeEEEEEC-CC----eEEEEEcCCC-CCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC-----Cc
Q psy12802 48 VVKGLAFS-PDSTKLAVAQS-DN----IIFIYKLGDD-WGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD-----GK 114 (1637)
Q Consensus 48 ~V~~~~~s-pd~~~la~~~~-d~----~i~iw~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d-----~~ 114 (1637)
.+.+.+|| |||++||.+.+ +| +|+++|+.++ ......+ .....+++|+|||+ |+....+ ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~------~~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV------SGTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE------EEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc------cCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 68889999 99999986543 22 5999999874 2111111 11134678999998 7766654 36
Q ss_pred EEEEEcCCCce--eeec--ccCCcEEEEEEecCCCeEEEEeC---CCcEEEEEecCCCCccccc--ccccccCCCCcEEE
Q psy12802 115 IKAAHVKANKT--QTLY--ASNSFVVALCLNVRGAGVLSGHA---DGSIVRYYVTEDASNFDQQ--QGRVVQHPVPPYAL 185 (1637)
Q Consensus 115 v~vwd~~~~~~--~~~~--~~~~~v~~l~~s~~g~~l~s~~~---dg~i~iwd~~~~~~g~~~~--~~~~~~~~~~v~~~ 185 (1637)
|+++++.++.. ..+. .......++.|||||++|+..+. ...|.++|+.+... .. ............++
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~---~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA---HNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT---CCCEEESSCCCTTCCEEE
T ss_pred EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC---CceeEEeecCCCCceEEE
Confidence 88899988753 2222 23345678999999999877663 34677888775321 22 22223345667788
Q ss_pred EecC-CeEEEEec-C----CeEEEEeCCC-ceeEE-eeccCCCCCCccEEEEEECCCCCEE-EEEecCc---EEEEEe
Q psy12802 186 SWPA-GYILAAGS-D----RIVTIYESDG-RVHRI-FDYTAPHYKEREFTVACSSPSGQAV-VVGSYDN---IKLFAW 251 (1637)
Q Consensus 186 ~~~~-~~l~~~~~-d----~~i~iwd~~~-~~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~d~---i~i~~~ 251 (1637)
.|+. +.|+..+. + ..|..+|..+ ..... +..+ .....+..+.+. +..| ++...++ +.+++.
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 8654 45544433 2 3566667432 22222 2211 112234455554 4444 5555566 455554
No 376
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.25 E-value=8.8e-06 Score=99.27 Aligned_cols=136 Identities=8% Similarity=-0.028 Sum_probs=69.5
Q ss_pred HHHHHhCCChHHHHHHHHHh----CCCChHHHHHHHHHHHHhcc---------cHHHHHHHHHHhC---------ChHHH
Q psy12802 933 LECYRKGKVYDKCIDLTRKI----NPKNVTALEEEWGDHLIENK---------QYNAAINHYIEAG---------KNNKA 990 (1637)
Q Consensus 933 ~~~y~~~~~~~~A~~l~~~~----~~~~~~~l~~~~~~~l~~~~---------~~~~A~~~~~~~~---------~~~~a 990 (1637)
+++|++.|++++|++++..+ ..|+.. .++.+...|...+ .+++|.++|.++. .|+..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44455555555555554444 122222 3444444444332 2455555555441 14445
Q ss_pred HHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCCHHHHHHHHHhcc---------CHHHHHHHHHHcCCH
Q psy12802 991 LDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKDYKTAEKIYSHCD---------MHEQIVDMYHQTGQW 1059 (1637)
Q Consensus 991 i~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~y~~~g~~ 1059 (1637)
|.+|.+.|++++|.++++.|.... ....+|+.+...|++.|++++|.++|.++. .+..++++|.+.|++
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 555555555555555555543221 024456666666666666666666666652 234566666666666
Q ss_pred HHHHHHHHhh
Q psy12802 1060 EKAYAIAEQH 1069 (1637)
Q Consensus 1060 ~~A~~~~~~~ 1069 (1637)
++|.++++++
T Consensus 192 d~A~~ll~~M 201 (501)
T 4g26_A 192 DKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 377
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.9e-05 Score=96.31 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
...++..+|..|...|+|++|..++.++ +.......+.+....++..++..|...|+|++|
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDL-------------------LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHH-------------------HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 4556667777777777777776666542 223333444566778899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhh-CC-CchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNY-HP-DLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
..+|.++. ...... .+ ......+..+|..+...|+|++|..+|.++
T Consensus 195 ~~~~~~al-------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 195 KASLTAAR-------------------TAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHH-------------------HHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------HHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88866642 112221 11 223467788999999999999999999887
No 378
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.23 E-value=2.8e-05 Score=99.45 Aligned_cols=252 Identities=11% Similarity=0.119 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCcc-------c--ceEEEEECC---CCCeEEEEE------CCCeEEEEEcCCCCCCce
Q psy12802 22 DIVRLRSEGNVAGIWAWRGQNGRKS-------Y--VVKGLAFSP---DSTKLAVAQ------SDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 22 dg~~la~~~~d~~i~vwd~~~~~h~-------~--~V~~~~~sp---d~~~la~~~------~d~~i~iw~~~~~~~~~~ 83 (1637)
++..|++++.|+.|+.+|.++|+.- . ....+..+| ++ .+++++ .+|.|..||..++....+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 4567888888999999999888721 0 011222233 44 444443 268999999988621111
Q ss_pred eEeec-c--------------------------CCCCCEEEEEEcCCCC-EEEEeCCC-------------------cEE
Q psy12802 84 VICNK-F--------------------------IQQCPVTTMVWLADGP-IIYGQSDG-------------------KIK 116 (1637)
Q Consensus 84 ~~~~~-~--------------------------~~~~~v~~v~~s~~~~-l~~~~~d~-------------------~v~ 116 (1637)
..... . ++......++++|++. +++++.++ .|.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 11000 0 0011113578888877 77777765 399
Q ss_pred EEEcCCCce-eeec--ccC-------CcEEEEEEecCCC---eEEEEeCCCcEEEEEecCCCCcccccccccc-------
Q psy12802 117 AAHVKANKT-QTLY--ASN-------SFVVALCLNVRGA---GVLSGHADGSIVRYYVTEDASNFDQQQGRVV------- 176 (1637)
Q Consensus 117 vwd~~~~~~-~~~~--~~~-------~~v~~l~~s~~g~---~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~------- 176 (1637)
.+|.++|+. -.+. .|. ..+.......+|+ .++.++.+|.++++|..+. +.+....
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-----~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-----ELLSAKGIVPQSWT 353 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-----CEEEEEESSCCSSE
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-----CEeccccccccccc
Confidence 999999997 2222 232 2233334444675 6889999999999998774 3321100
Q ss_pred ---------------------cCC-----------CCcEEEEecC--CeEEEEec-------------------------
Q psy12802 177 ---------------------QHP-----------VPPYALSWPA--GYILAAGS------------------------- 197 (1637)
Q Consensus 177 ---------------------~~~-----------~~v~~~~~~~--~~l~~~~~------------------------- 197 (1637)
... ..-..++|+| +.+++.+.
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 000 0011256666 34444321
Q ss_pred --------------------CCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCC
Q psy12802 198 --------------------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK 255 (1637)
Q Consensus 198 --------------------d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~ 255 (1637)
+|.|..|| .+|+.+.++..+.. .....++..|.++++++.|+ ++.||..+++
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------FNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 37899999 88998888775322 22335566788999999999 9999999999
Q ss_pred CccccCCCcccCCCcceeEEEEcCCCCE-EEEEec
Q psy12802 256 SVWEEQPNKTIPNLYTISALSWKRDGSR-IACGGL 289 (1637)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~l~~spdg~~-l~~~~~ 289 (1637)
..|....... ....-+.|+.||+. +++.+.
T Consensus 508 ~lw~~~~~~~----~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 508 KLWEQPAASG----VMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEEEEECSSC----CCSCCEEEEETTEEEEEEEEC
T ss_pred cceeeeCCCC----cccCceEEEECCEEEEEEEec
Confidence 8886543321 12233566778864 444433
No 379
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=2.5e-05 Score=95.23 Aligned_cols=106 Identities=11% Similarity=-0.022 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhC-CCchHHHHHHHHHHHHHccCH
Q psy12802 1072 VGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYH-PDLLDTTLLHLAQECEESKNY 1150 (1637)
Q Consensus 1072 ~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~la~~~~~~g~~ 1150 (1637)
......++..+|.+|..+|+|++|..++.+. ........ .+....++..+|..|...|+|
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDL-------------------LREFKKLDDKPSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHTTSSCSTHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHH-------------------HHHHHhcccchhHHHHHHHHHHHHHHhCcH
Confidence 3445778889999999999999998886552 22222222 245567889999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCc-----cchHHHHHHHHHhcCcchHHHHHHHh
Q psy12802 1151 KQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQ-----EAVEPVVYLWAKSLGGDSAVRLLNRL 1215 (1637)
Q Consensus 1151 ~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~ 1215 (1637)
++|..+|.++.. +.....++ .....++..+...+++++|.+.|.++
T Consensus 192 ~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 192 AKSKASLTAART-------------------AANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHH-------------------HHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------HhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999988732 11111111 12345566667777788887777554
No 380
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.20 E-value=1.9e-05 Score=77.21 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHH
Q psy12802 1135 TTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNR 1214 (1637)
Q Consensus 1135 ~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 1214 (1637)
.++..+|..+...|++++|+.+|.++ +.....+...+..++..+...|++++|++.|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 60 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKA---------------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHH---------------------HHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 46788899999999999999999887 222223344556677777777777777777755
Q ss_pred hccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Q psy12802 1215 LSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAER 1294 (1637)
Q Consensus 1215 ~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~ 1294 (1637)
+. ...+..+..+..+|..+...|++++|+..|.++ +
T Consensus 61 ~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~-------------- 96 (136)
T 2fo7_A 61 AL------------------------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA------L-------------- 96 (136)
T ss_dssp HH------------------------HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH------H--------------
T ss_pred HH------------------------HHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH------H--------------
Confidence 31 013445677888999999999999998888876 2
Q ss_pred HHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1295 IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1295 ~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
...|. .+.++..++..+...|++++|...|.++
T Consensus 97 ---~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 97 ---ELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp ---HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---HhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 22343 3567788888888888888888777543
No 381
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.18 E-value=9.1e-06 Score=91.68 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
....+..+|..+...|++++|+..|.++... .|....++..+|..|..+|++++|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------~p~~~~~~~~la~~~~~~~~~~~A 57 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-------------------------NPLVAVYYTNRALCYLKMQQPEQA 57 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCccHHHHHHHHHHHHHhcCHHHH
Confidence 3557888899999999999998888765332 244578899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+..|.++-.. .| ....++..+|..|...|++++|+.+|.++
T Consensus 58 ~~~~~~al~~-----------------------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 58 LADCRRALEL-----------------------DG-QSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHHTTS-----------------------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----------------------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987775432 22 33578899999999999999999999998
No 382
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.17 E-value=0.0025 Score=73.22 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=151.8
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCC
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-----------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW 79 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-----------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~ 79 (1637)
...+.++.|.+++..+++| ..+.|. .....|+ ....+.+|.|+| +. +.+++.++.| |....+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i--~~S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIM--LHTTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEE--EEESSTT
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeE--EEECCCC
Confidence 4578999999888888854 466553 2333222 134688999987 44 4444556644 3333221
Q ss_pred CCceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEecCCCeEEEEeCCCcEE
Q psy12802 80 GDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGVLSGHADGSIV 157 (1637)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~ 157 (1637)
..-+.+.....+...+..+.+.+++.++.++.++.|.. ..+.|+. ....++...+..+.++|++..++++.. |.+.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~ 186 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFY 186 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEE
Confidence 12222221112345678888887777444445665432 3344544 233345567899999999887776654 5443
Q ss_pred E-EEecCCCCcccccccccccCCCCcEEEEecC-CeEEEEecCCeEEEEeCC-CceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 158 R-YYVTEDASNFDQQQGRVVQHPVPPYALSWPA-GYILAAGSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 158 i-wd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
. +|-. +..| ..+ -......+..+.+++ +.++.++.+|.+.+.+.+ |+....+....- .....+..+.+.|+
T Consensus 187 ~S~d~g--G~tW-~~~--~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~-~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 187 STWEPG--QTAW-EPH--NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLR-RNSVGFLDLAYRTP 260 (327)
T ss_dssp EEECTT--CSSC-EEE--ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTS-SCCSCEEEEEESSS
T ss_pred EEeCCC--CCce-eEC--CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcc-cCCcceEEEEecCC
Confidence 3 2211 1111 111 123456778888876 577777888888877533 554444332100 12235889999998
Q ss_pred CCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEE
Q psy12802 235 GQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE 297 (1637)
Q Consensus 235 g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd 297 (1637)
+..++++....+ ++..+ ....|...... ......+.++.|.+++. +++++.+|.|.-++
T Consensus 261 ~~~~~~g~~g~i-~~S~D-gG~tW~~~~~~-~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 261 NEVWLAGGAGAL-LCSQD-GGQTWQQDVDV-KKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SCEEEEESTTCE-EEESS-TTSSCEECGGG-TTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CEEEEEeCCCeE-EEeCC-CCcccEEcCcc-CCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 888887764445 33333 34556432211 11224567888875554 66677788776655
No 383
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.16 E-value=4.4e-06 Score=83.51 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
|........+|..+...|++++|+.+|.++... +|. .+.+|..+|.+|...|+++
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL------------------------DHY-DSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------------------------Ccc-cHHHHHHHHHHHHHHhhHH
Confidence 344556678899999999999999988765322 555 7888999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+|+..|.++...+ |..+.+++.+|.+|..+|++++|+..|.++
T Consensus 73 ~A~~~~~~al~l~-------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 73 LAIHSYSYGAVMD-------------------------IXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHS-------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998764322 445678899999999999999999998774
No 384
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.14 E-value=1.8e-05 Score=81.06 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
.+..+|..+...|++++|+.+|.++... .|. ...++..+|.++...|++++|+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL------------------------NPS-NAIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------STT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh------------------------CCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456777777788888877777664221 343 567888889999999998888888
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHH
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYE 1119 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~ 1119 (1637)
|.++.... +....++..+|..+..+|++++|+..|.++-
T Consensus 70 ~~~a~~~~-------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---------------- 108 (166)
T 1a17_A 70 ATRAIELD-------------------------KKYIKGYYRRAASNMALGKFRAALRDYETVV---------------- 108 (166)
T ss_dssp HHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHhC-------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHH----------------
Confidence 87653221 3446788899999999999999988866631
Q ss_pred HHHHHHHhhCCCchHHHH--HHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1120 NMIKLVRNYHPDLLDTTL--LHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1120 ~a~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
. ..|.. ..++ ..++..+...|++++|+..|.++
T Consensus 109 ------~-~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 109 ------K-VKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp ------H-HSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------H-hCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 1 12211 2233 44555578889999999888876
No 385
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=2.5e-05 Score=76.45 Aligned_cols=114 Identities=13% Similarity=-0.022 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy12802 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAE 1096 (1637)
Q Consensus 1017 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 1096 (1637)
...+...|..+...|+|++|+..|.++..++.-. ++ + +.....+....+|.++|.++..+|+|++|+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~--------~~-~----~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl 77 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM--------PP-E----EAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--------CT-T----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--------cc-h----hhhhhccchHHHHHHHHHHHHHCCCHHHHH
Confidence 4467889999999999999999999886655310 00 0 000001234569999999999999999999
Q ss_pred HHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHH----HHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1097 RLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTL----LHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1097 ~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
..|.+ |+.+|.+.+ +.. +....+| ++.|..+...|++++|+..|.++
T Consensus 78 ~~~~k------AL~l~n~~~----------e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 78 HSADK------ALHYFNRRG----------ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHH------HHHHHHHHC----------CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------HHHhhhccc----------cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 98554 343332222 112 3446788 99999999999999999999998
No 386
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=3.8e-05 Score=83.73 Aligned_cols=88 Identities=7% Similarity=-0.108 Sum_probs=47.0
Q ss_pred cccchHHHHHHH-------HHHHHHhCCHHHHHHHHHhccCHH-----------------------------HHHHHHHH
Q psy12802 1012 NKQDIAQHVKTL-------AQHFKTVKDYKTAEKIYSHCDMHE-----------------------------QIVDMYHQ 1055 (1637)
Q Consensus 1012 ~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~-----------------------------~~~~~y~~ 1055 (1637)
+|+ .+++|..+ +..+...+++.+++..+.+..... ....++..
T Consensus 36 dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~ 114 (282)
T 4f3v_A 36 DES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAA 114 (282)
T ss_dssp CTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHH
T ss_pred Chh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHH
Confidence 555 67777777 677777777777776666653210 12344445
Q ss_pred cCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12802 1056 TGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLI 1101 (1637)
Q Consensus 1056 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 1101 (1637)
.|++++|.+++..... .|... ..+.+|.++.+.|+|++|+.+|.+
T Consensus 115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555544322 12222 445555555555555555555443
No 387
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.11 E-value=1.8e-05 Score=77.42 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12802 961 EEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY 1040 (1637)
Q Consensus 961 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 1040 (1637)
+..+|..+...|++++|..+|.++... .|. ....+..+|..+...|++++|+.+|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~~ 58 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL------------------------DPR-SAEAWYNLGNAYYKQGDYDEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc------------------------CCc-chhHHHHHHHHHHHhcCHHHHHHHH
Confidence 456777888888888888877664211 233 4567778888888888888888888
Q ss_pred HhccCH--------HHHHHHHHHcCCHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1041 SHCDMH--------EQIVDMYHQTGQWEKAYAIAEQHLN-VGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1041 ~~~~~~--------~~~~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
.++... ..+..+|.+.|++++|++.+++... .+....++..+|..+...|++++|+..|.++
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 876321 2356667777777777777766432 2344667778888888888888888877653
No 388
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.09 E-value=0.00038 Score=75.62 Aligned_cols=198 Identities=8% Similarity=0.016 Sum_probs=124.5
Q ss_pred CEEEEEEcCCCC-EEEEeC--CCcEEEEEcCCCce-eeec-ccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCCc
Q psy12802 94 PVTTMVWLADGP-IIYGQS--DGKIKAAHVKANKT-QTLY-ASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDASN 167 (1637)
Q Consensus 94 ~v~~v~~s~~~~-l~~~~~--d~~v~vwd~~~~~~-~~~~-~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~g 167 (1637)
....+.|+|++. +++.+. ++.|.++|+.+++. ..+. +.......++++ |..+..++ .++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~--- 96 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL--- 96 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT---
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC---
Confidence 368999999977 555443 68999999999998 4433 222233455554 55555554 5889999998863
Q ss_pred ccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-
Q psy12802 168 FDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 245 (1637)
Q Consensus 168 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~- 245 (1637)
+.+.++......-+.+++.+..++++..++.|.++| .+.+.+..+........-..++.+.|. +|...+....++
T Consensus 97 --~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 97 --SNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp --EEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred --cEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 455555422133456777766666666789999999 777888877743210111236677887 675444443344
Q ss_pred EEEEEeCCCCCccccCCCc--------ccCCCcceeEEEEcCCCCEE-EEEecCCcEEEEEcc
Q psy12802 246 IKLFAWSPSKSVWEEQPNK--------TIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESV 299 (1637)
Q Consensus 246 i~i~~~~~~~~~~~~~~~~--------~~~~~~~i~~l~~spdg~~l-~~~~~dg~v~iwd~~ 299 (1637)
|.+.|..+++..-...... ..........++|+|+++.+ +++...+.|...++.
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 8888887765431111110 00112356899999998764 556677888888874
No 389
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.08 E-value=7.7e-05 Score=95.15 Aligned_cols=268 Identities=12% Similarity=0.155 Sum_probs=158.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCc------cc-----------ce-EEEEECCCCCeEEEEECCCeEEEEEcCCCCCCcee
Q psy12802 23 IVRLRSEGNVAGIWAWRGQNGRK------SY-----------VV-KGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV 84 (1637)
Q Consensus 23 g~~la~~~~d~~i~vwd~~~~~h------~~-----------~V-~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~ 84 (1637)
+..+.+++.++.|+-+|..+|+. .. .+ ..+++ ++..|++++.|+.|..+|..++. .+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~---~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK---AI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC---EE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC---Ee
Confidence 45566667788888888887761 00 00 11222 35678888899999999998862 11
Q ss_pred EeeccCCCCCEEEEEEcC---CCCEEEEeC------CCcEEEEEcCCCce-eeecc---c--------------------
Q psy12802 85 ICNKFIQQCPVTTMVWLA---DGPIIYGQS------DGKIKAAHVKANKT-QTLYA---S-------------------- 131 (1637)
Q Consensus 85 ~~~~~~~~~~v~~v~~s~---~~~l~~~~~------d~~v~vwd~~~~~~-~~~~~---~-------------------- 131 (1637)
-............+.-+| ++.+++++. +|.|..+|.++|+. -.+.. .
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 111111100000000111 445555433 58999999999987 22221 0
Q ss_pred --------CCcEEEEEEecCCCeEEEEeCCCc-------------------EEEEEecCCCCccccccccccc--CC---
Q psy12802 132 --------NSFVVALCLNVRGAGVLSGHADGS-------------------IVRYYVTEDASNFDQQQGRVVQ--HP--- 179 (1637)
Q Consensus 132 --------~~~v~~l~~s~~g~~l~s~~~dg~-------------------i~iwd~~~~~~g~~~~~~~~~~--~~--- 179 (1637)
.....+++++|++..+++++.++. |..+|..+. +.+..... |.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-----~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-----KLAWHYQVTPGDSWD 295 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-----CEEEEEESSTTCCSC
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-----ceeeEeecCCCcccc
Confidence 011224788898889988887763 888888774 33333322 22
Q ss_pred ----CCcEE--EEecCC---eEEEEecCCeEEEEe-CCCceeEEeeccCCC-------CCCc------------------
Q psy12802 180 ----VPPYA--LSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-------YKER------------------ 224 (1637)
Q Consensus 180 ----~~v~~--~~~~~~---~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~-------~~~~------------------ 224 (1637)
.++.. +.+... .+++++.+|.+.++| .+|+.+........+ ....
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 22222 223332 588899999999999 889988554432100 0000
Q ss_pred ------cEEEEEECCCCCEEEEEe------------------------------------cCc-EEEEEeCCCCCccccC
Q psy12802 225 ------EFTVACSSPSGQAVVVGS------------------------------------YDN-IKLFAWSPSKSVWEEQ 261 (1637)
Q Consensus 225 ------~i~~~~~sp~g~~l~~~~------------------------------------~d~-i~i~~~~~~~~~~~~~ 261 (1637)
.-..++++|+...+.+.. .++ |..||..+++..|...
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 011267788777666522 124 7788888887777543
Q ss_pred CCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeee
Q psy12802 262 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 306 (1637)
Q Consensus 262 ~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~ 306 (1637)
... +.....+...+..+++++.||.|+.||..+++.+++
T Consensus 456 ~~~------~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 456 YPT------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp ESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCC------CCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 221 222233444678899999999999999998877655
No 390
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.08 E-value=0.00042 Score=79.93 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=137.5
Q ss_pred ceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeecc-----------------CCCCCEEEEEEcC-CCCEEEE
Q psy12802 48 VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKF-----------------IQQCPVTTMVWLA-DGPIIYG 109 (1637)
Q Consensus 48 ~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-----------------~~~~~v~~v~~s~-~~~l~~~ 109 (1637)
...+++|+|+|+.+.++..++.|..|+..++ ......... .....+.++++.+ +|.++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS--GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT--CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC--ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 4567889999987888888999999987653 111111100 0123578999998 6776666
Q ss_pred eCCCcEEEEEcCCCceeeecc-----cCCcEEEEEEec-CCCeEEEEeC-----------------CCcEEEEEecCCCC
Q psy12802 110 QSDGKIKAAHVKANKTQTLYA-----SNSFVVALCLNV-RGAGVLSGHA-----------------DGSIVRYYVTEDAS 166 (1637)
Q Consensus 110 ~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~l~~s~-~g~~l~s~~~-----------------dg~i~iwd~~~~~~ 166 (1637)
...+.|..+|..++....+.. .......+++.+ +|+..++... ++.|..||..+.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-- 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK-- 175 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT--
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC--
Confidence 555668889887765433321 123578899999 9987666432 366888876542
Q ss_pred cccccccccccCCCCcEEEEecCC--eEEEE-ecCCeEEEEeCCCc---eeEEeeccCCCCCCccEEEEEECCCCCEEEE
Q psy12802 167 NFDQQQGRVVQHPVPPYALSWPAG--YILAA-GSDRIVTIYESDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVV 240 (1637)
Q Consensus 167 g~~~~~~~~~~~~~~v~~~~~~~~--~l~~~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 240 (1637)
. ...+......+..++|+|+ .++++ +..+.|.+|+.++. ....+.. ... ...++++++|++.++
T Consensus 176 ---~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 176 ---E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp ---E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----CSS-EEEEEECTTSCEEEE
T ss_pred ---E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----CCC-CCCeEECCCCCEEEE
Confidence 1 1222222345678999884 45544 55689999985432 1222221 112 678999999987666
Q ss_pred Eec----------Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEcc
Q psy12802 241 GSY----------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 299 (1637)
Q Consensus 241 ~~~----------d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~ 299 (1637)
... .+ |..++.+ ...........-.....++++.+ .++..+++....+.|..+++.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 544 22 5555432 21110000000000234566666 356655555567888888874
No 391
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=1.4e-05 Score=92.83 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHcc--CHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAK--QWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~--~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
...+..+|..+...|+|++|+.+|.++... .-... ..+++..+ .+. ...++.++|.+|...|++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~-----~~~-~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKA-----QAL-RLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHH-----HHH-HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHH-----HHH-HHHHHHHHHHHHHHcCCHHH
Confidence 345678999999999999999999876322 10000 00111110 111 35689999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhc
Q psy12802 1036 AEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQ 1115 (1637)
Q Consensus 1036 A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~ 1115 (1637)
|+.+|.++...+ |....+++.+|.+|..+|++++|+..|.++
T Consensus 215 A~~~~~~al~~~-------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------- 256 (336)
T 1p5q_A 215 AIESCNKALELD-------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKV------------- 256 (336)
T ss_dssp HHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhC-------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------
Confidence 999988764322 445788999999999999999999886663
Q ss_pred CCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHH-HHHHHc
Q psy12802 1116 RQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAE-KYYLDC 1160 (1637)
Q Consensus 1116 ~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~y~~a 1160 (1637)
++ ..| ....++..+|.++...|++++|+ ..|.++
T Consensus 257 ------l~----l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 257 ------LQ----LYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp ------HH----HCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HH----HCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 133 23578899999999999999994 456655
No 392
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.08 E-value=0.00019 Score=76.58 Aligned_cols=185 Identities=9% Similarity=-0.015 Sum_probs=120.5
Q ss_pred cceEEEEECCCCCeEEEEECCC--eEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCC
Q psy12802 47 YVVKGLAFSPDSTKLAVAQSDN--IIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKA 122 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~ 122 (1637)
.-..++.|+ ++....+.+.+| .|+++|+.++ +++..... ..........+++. ++....++.+.++|.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg----kv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG----KTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC----CEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCC----cEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 345889998 666556666655 8999999986 33322221 22333332333455 44556689999999999
Q ss_pred Cce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc--CC---CCcEEEEecCCeEEEEe
Q psy12802 123 NKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ--HP---VPPYALSWPAGYILAAG 196 (1637)
Q Consensus 123 ~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~--~~---~~v~~~~~~~~~l~~~~ 196 (1637)
.+. .++.-.. ....+++||+.|+.++.++.|.++|..+. +.+.++.. .. ..+..+.|..+.+.+..
T Consensus 117 ~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~-----~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~ 188 (262)
T 3nol_A 117 LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESL-----TPVRTITVTAHGEELPELNELEWVDGEIFANV 188 (262)
T ss_dssp CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTC-----SEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCC-----eEEEEEEeccCCccccccceeEEECCEEEEEE
Confidence 988 4444322 22344477888888777788999998763 33444332 12 33456788777666655
Q ss_pred -cCCeEEEEe-CCCceeEEeeccCC-------CCCCccEEEEEECCCCCEEEEEecCc
Q psy12802 197 -SDRIVTIYE-SDGRVHRIFDYTAP-------HYKEREFTVACSSPSGQAVVVGSYDN 245 (1637)
Q Consensus 197 -~d~~i~iwd-~~~~~~~~~~~~~~-------~~~~~~i~~~~~sp~g~~l~~~~~d~ 245 (1637)
.++.|.+.| .+|+.+..++...- .....-.+.++|+|+++.|.+.+..-
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 588999999 89999999886411 01234578999999988887776544
No 393
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.07 E-value=0.063 Score=67.09 Aligned_cols=190 Identities=14% Similarity=0.006 Sum_probs=114.9
Q ss_pred ceeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCC--------cccceEEEEECCCCCeEEEE-ECCCeEEEEEcCCCCCCc
Q psy12802 13 VLQDDVFNLDIVRLRSE-GNVAGIWAWRGQNGR--------KSYVVKGLAFSPDSTKLAVA-QSDNIIFIYKLGDDWGDK 82 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~-~~d~~i~vwd~~~~~--------h~~~V~~~~~spd~~~la~~-~~d~~i~iw~~~~~~~~~ 82 (1637)
....++|++.+..|... ...+.|..++..... ......++++.+.+..|..+ ...+.|.+.+.... ..
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~--~~ 118 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS--LR 118 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SC
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC--CE
Confidence 45688999976666654 446778888876542 11467899999977766655 45688999998753 12
Q ss_pred eeEeeccCCCCCEEEEEEcCCCC-EEEEeC--CCcEEEEEcCCCceeeec-ccCCcEEEEEEecCCCeEEEEeC-CCcEE
Q psy12802 83 KVICNKFIQQCPVTTMVWLADGP-IIYGQS--DGKIKAAHVKANKTQTLY-ASNSFVVALCLNVRGAGVLSGHA-DGSIV 157 (1637)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~--d~~v~vwd~~~~~~~~~~-~~~~~v~~l~~s~~g~~l~s~~~-dg~i~ 157 (1637)
+.+.. ..-.....|++.|.+. ++.+.. .+.|...++++.....+. ..-.....|++++++..|..+.. .+.|.
T Consensus 119 ~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 119 KVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp EEEEC--SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEe--CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 22221 2334466889998755 544432 467887888766553333 34457899999998777666654 66788
Q ss_pred EEEecCCCCcccccccccccCCCCcEEEEecCCeEEEE-ecCCeEEEEe-CCCcee
Q psy12802 158 RYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAA-GSDRIVTIYE-SDGRVH 211 (1637)
Q Consensus 158 iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~d~~i~iwd-~~~~~~ 211 (1637)
..|+.... ......+....+..+++.++.++.+ ...+.|...| .+|+..
T Consensus 197 ~~~~dG~~-----~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 197 KSNLDGTN-----RQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EESSSCCE-----EC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred EecCCCCc-----cEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 87776421 1111222233456777777655444 4567888888 455543
No 394
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.07 E-value=4.3e-05 Score=82.17 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHH
Q psy12802 1076 KATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEK 1155 (1637)
Q Consensus 1076 ~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1155 (1637)
...++.+|..+...|++++|+..|.++- ++ ...++..+|..+...|++++|+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------------------------~~-~~~~~~~lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--------------------------DP-HSRICFNIGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--------------------------SC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--------------------------CC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 3456678888888888888888776642 11 24678999999999999999999
Q ss_pred HHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHH
Q psy12802 1156 YYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAF 1235 (1637)
Q Consensus 1156 ~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~ 1235 (1637)
+|.++ +...+....++..+|..+...|++++|++.|.++.... -...... .
T Consensus 59 ~~~~a---------------------l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~--~ 109 (213)
T 1hh8_A 59 AFTRS---------------------INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL------RGNQLID--Y 109 (213)
T ss_dssp HHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------TTCSEEE--C
T ss_pred HHHHH---------------------HHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCccHHH--H
Confidence 99988 33334555677888888888888888888886541110 0000000 0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1236 ELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1236 ~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
........+..+.+++.+|..|...|++++|+..|.++
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 00000012345689999999999999999999999987
No 395
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.1e-05 Score=78.09 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
..+...|..+...|+|++|+.+|.++... .|+ .+.++..+|.+|...|++++|+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR------------------------APE-DARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------CCC-ChHHHHHHHHHHHHhcCHHHHHH
Confidence 44567888888999999998888765332 454 67889999999999999999998
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
.|.++...+ |....++..+|.++..+|++++|+..|.++
T Consensus 60 ~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 60 DCNKAIEKD-------------------------PNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-------------------------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 887764322 445778999999999999999999987764
No 396
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.06 E-value=2.5e-05 Score=84.07 Aligned_cols=128 Identities=10% Similarity=0.004 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHH
Q psy12802 939 GKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQ 1018 (1637)
Q Consensus 939 ~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~ 1018 (1637)
.|++++|+..+++..++ ....+..+|..+...|++++|+.+|.++... .|. .+.
T Consensus 19 ~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~~~-~~~ 72 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR------------------------DKH-LAV 72 (213)
T ss_dssp TTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHH
T ss_pred hCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------Ccc-chH
Confidence 34444444444433333 3456778999999999999998888765322 344 677
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHh-hcChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy12802 1019 HVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQ-HLNVGEIKATFIQKCKQLEEENKFKEAER 1097 (1637)
Q Consensus 1019 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 1097 (1637)
++..+|.+|...|++++|+..|.++..... .... +..... ....+....++..+|..|..+|++++|+.
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQL----IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT------TCSE----EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CccH----HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 899999999999999999999988643210 0000 000000 00124456889999999999999999999
Q ss_pred HHHHh
Q psy12802 1098 LYLII 1102 (1637)
Q Consensus 1098 ~y~~~ 1102 (1637)
.|.++
T Consensus 143 ~~~~a 147 (213)
T 1hh8_A 143 QLALA 147 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 397
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.05 E-value=0.0001 Score=94.43 Aligned_cols=265 Identities=14% Similarity=0.134 Sum_probs=148.0
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCCC----------cccceEEEEECCCCCeEEEEE-CCCeEEE
Q psy12802 16 DDVFNL-DIVRLRSEGNVA-----------GIWAWRGQNGR----------KSYVVKGLAFSPDSTKLAVAQ-SDNIIFI 72 (1637)
Q Consensus 16 ~~~~sp-dg~~la~~~~d~-----------~i~vwd~~~~~----------h~~~V~~~~~spd~~~la~~~-~d~~i~i 72 (1637)
..++.| +|++++.|+.+. .+.+||..++. +.....++++.++|+.+++|+ .++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 899999887532 58899988766 122334578889999999988 4568999
Q ss_pred EEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe-CC-----CcEEEEEcCCCceeeeccc-----CCcEEEEEE
Q psy12802 73 YKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ-SD-----GKIKAAHVKANKTQTLYAS-----NSFVVALCL 140 (1637)
Q Consensus 73 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~-~d-----~~v~vwd~~~~~~~~~~~~-----~~~v~~l~~ 140 (1637)
||..+.. ...+.. ......-.+++..++|+ ++.|+ .+ ..+.+||..+++...+... ...-....+
T Consensus 270 yd~~t~~--W~~~~~-~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~ 346 (656)
T 1k3i_A 270 YDSSSDS--WIPGPD-MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 346 (656)
T ss_dssp EEGGGTE--EEECCC-CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred ecCcCCc--eeECCC-CCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence 9987641 111111 11122223455667899 77777 34 5699999998876443210 000000122
Q ss_pred ecCCCeEEEEeCCC---------cEEEEEecCCCCccccccccccc------CCCCcEEEEec--CC-eEEEEecCC---
Q psy12802 141 NVRGAGVLSGHADG---------SIVRYYVTEDASNFDQQQGRVVQ------HPVPPYALSWP--AG-YILAAGSDR--- 199 (1637)
Q Consensus 141 s~~g~~l~s~~~dg---------~i~iwd~~~~~~g~~~~~~~~~~------~~~~v~~~~~~--~~-~l~~~~~d~--- 199 (1637)
..++..++.|+.+| .+..||..+... ......... ....-.++.|. .+ .+++|+.++
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 34556666665554 456777765421 011111111 01123444443 24 556666432
Q ss_pred --------eEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC-----------c-EEEEEeCCCCCccc
Q psy12802 200 --------IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----------N-IKLFAWSPSKSVWE 259 (1637)
Q Consensus 200 --------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----------~-i~i~~~~~~~~~~~ 259 (1637)
.|.+||........+..... +......+.+..|+|+.+++|+.+ . +.+||..+ ..|.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t--~~W~ 501 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ--DTFY 501 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG--TEEE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC--Ccee
Confidence 67788843333333321111 223334456778999999999754 2 77887654 4464
Q ss_pred cCCCcccCCCcceeEEEEcCCCCEEEEEec
Q psy12802 260 EQPNKTIPNLYTISALSWKRDGSRIACGGL 289 (1637)
Q Consensus 260 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 289 (1637)
......... ....+..+.|||+.++.|+.
T Consensus 502 ~~~~~~~~R-~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVR-VYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCC-CTTEEEEECTTSCEEEEECC
T ss_pred ecCCCCCcc-ccccHhhcCCCcEEEecCCC
Confidence 322221111 12234556799999998884
No 398
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.04 E-value=3.5e-05 Score=78.85 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
...+..+|..+...|++++|+.+|.++ +.....+..++..+|..+...|++++|++.|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~a---------------------l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 71 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQA---------------------IELNPSNAIYYGNRSLAYLRTECYGYALGDAT 71 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467888999999999999999999988 33344455667788888888888888887776
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHH
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAE 1293 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~ 1293 (1637)
++ ++ ..+..+.++..+|..+...|++++|+..|.++ +
T Consensus 72 ~a-------------------~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~------------- 108 (166)
T 1a17_A 72 RA-------------------IE-----LDKKYIKGYYRRAASNMALGKFRAALRDYETV------V------------- 108 (166)
T ss_dssp HH-------------------HH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------H-------------
T ss_pred HH-------------------HH-----hCcccHHHHHHHHHHHHHhccHHHHHHHHHHH------H-------------
Confidence 54 11 13556788999999999999999999999887 2
Q ss_pred HHHhhhCCCChHHHH--HHhHHHHHhcCChhhHHHHHH
Q psy12802 1294 RIANEHDPTSIGDIL--LNQSKCEFENENFSKFETLLL 1329 (1637)
Q Consensus 1294 ~~a~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~ 1329 (1637)
...|.. +.++ ...+..+...|++++|+..+.
T Consensus 109 ----~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 109 ----KVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp ----HHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 234442 3344 444444666677776666553
No 399
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.04 E-value=1.4e-05 Score=79.81 Aligned_cols=97 Identities=18% Similarity=0.030 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRL 1211 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 1211 (1637)
....++..+|..+...|+|++|+.+|.++ +...+.+..++..+|..+...|++++|++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~a---------------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQAL---------------------CVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHH---------------------HHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34568899999999999999999999988 666677777888899999999998888888
Q ss_pred HHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1212 LNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1212 ~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|.++ + ...|..+.+++.+|..|...|++++|+..|.++
T Consensus 78 ~~~a-------------------l-----~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 78 YSYG-------------------A-----VMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHH-------------------H-----HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-------------------H-----hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8665 1 124667889999999999999999999999987
No 400
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.03 E-value=0.0061 Score=69.97 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=150.8
Q ss_pred ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeecc-CCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCc
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKF-IQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANK 124 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~ 124 (1637)
...+.+|.|.+++..++ ++.+|.| +...+.+ ..-+.+.... .....+.+|.|+| +.++.++.++.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG-~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGG-QTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTT-SSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCC-CCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCC
Confidence 45799999988887777 4557765 2333222 1112221111 1245688999986 55444455665443 445555
Q ss_pred e-eeec---ccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC-CeEEEEecCC
Q psy12802 125 T-QTLY---ASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA-GYILAAGSDR 199 (1637)
Q Consensus 125 ~-~~~~---~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~ 199 (1637)
. .... .+...+..+.+.+++..++++ .+|.| |...+.+.-|.. ...++...+..+.+.| +.++..+.+|
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~---~~~~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQA---LVQEAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEE---EECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEE---eecCCCcceEEEEEcCCCcEEEEECCC
Confidence 4 3322 234567888888887766655 45544 333332211211 1123456788899976 4566666666
Q ss_pred eEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccCCCcceeEEEE
Q psy12802 200 IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW 277 (1637)
Q Consensus 200 ~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 277 (1637)
.+..-+ ..|...+.+.. .....+..+.++|+++.++++ .++ +.+.+ ......|.............+.++.+
T Consensus 184 ~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~-~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSD-PDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp SEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEE-TTTEEEEEE-TTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred cEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEe-CCceEEEec-CCCCCeeEeccCCcccCCcceEEEEe
Confidence 655443 33555544432 244578899999999877655 445 54432 12233454322211223346889999
Q ss_pred cCCCCEEEEEecCCcEEEEEccccceeeeCcEEEEEecCCeEEEecCCCCCCCceeEEecc--cCceeeEEEEecCceEE
Q psy12802 278 KRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ--YGYEITDVAIMGNDRYL 355 (1637)
Q Consensus 278 spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~i~~v~~s~~~~~l 355 (1637)
.|++..++++ .+|.| ++....++.. ..+... ....+.++.|.++++++
T Consensus 258 ~~~~~~~~~g-~~g~i-~~S~DgG~tW----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~ 307 (327)
T 2xbg_A 258 RTPNEVWLAG-GAGAL-LCSQDGGQTW----------------------------QQDVDVKKVPSNFYKILFFSPDQGF 307 (327)
T ss_dssp SSSSCEEEEE-STTCE-EEESSTTSSC----------------------------EECGGGTTSSSCCCEEEEEETTEEE
T ss_pred cCCCEEEEEe-CCCeE-EEeCCCCccc----------------------------EEcCccCCCCCCeEEEEEECCCceE
Confidence 9888766655 46666 3333222110 001100 11246778887778888
Q ss_pred EEeCCCcEEEee
Q psy12802 356 VARTPDTLLLGD 367 (1637)
Q Consensus 356 v~~~~~~i~i~d 367 (1637)
+++.++.|.-++
T Consensus 308 ~~G~~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQKGILLRYV 319 (327)
T ss_dssp EECSTTEEEEEC
T ss_pred EEcCCceEEEEc
Confidence 888888776654
No 401
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=2.9e-05 Score=76.03 Aligned_cols=105 Identities=10% Similarity=0.010 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhh-------ccccchHHHHHHHHHHHHHhCC
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVI-------TNKQDIAQHVKTLAQHFKTVKD 1032 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~-------~~~~~~~~~~~~la~~~~~~g~ 1032 (1637)
.....|..+...|+|++|+..|.++..+ .... ..|. ...+|.++|.++...|+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-------------------~p~~~~~~a~~~~~~-~a~a~~n~g~al~~Lgr 72 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI-------------------SHTMPPEEAFDHAGF-DAFCHAGLAEALAGLRS 72 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------HTTSCTTSCCCHHHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh-------------------CCCCcchhhhhhccc-hHHHHHHHHHHHHHCCC
Confidence 3457899999999999999998776432 2110 0111 34489999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1033 YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATF----IQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1033 ~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
|++|+..|.++... +-+ +. .-.|....+| ++.|..|..+|++++|+..|.++
T Consensus 73 ~~eAl~~~~kAL~l------~n~------~~------e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 73 FDEALHSADKALHY------FNR------RG------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHHHH------HHH------HC------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------hhc------cc------cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998876432 211 11 1135667788 99999999999999999998774
No 402
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.01 E-value=0.0019 Score=69.69 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=127.1
Q ss_pred cceEEEEECCCCCeEE-EEECCCeEEEEEcCCCCCCceeEeec-cCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCC
Q psy12802 47 YVVKGLAFSPDSTKLA-VAQSDNIIFIYKLGDDWGDKKVICNK-FIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKAN 123 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~ 123 (1637)
..+.+++|+|++..|. +...++.|...|.. + +++... ..-......|++.+++. +++.-.++.+.++++...
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g----~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G----DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-C----CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C----CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 4699999999877665 46667778888876 3 222221 22336788899998888 555556788989887654
Q ss_pred ce----eee------cccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccc-------ccCCCCcEEEE
Q psy12802 124 KT----QTL------YASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRV-------VQHPVPPYALS 186 (1637)
Q Consensus 124 ~~----~~~------~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~-------~~~~~~v~~~~ 186 (1637)
.. ... .........++|+|+++.|.++.......+|.+.....+ ..+..+ ..+-..+.+++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~--~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS--NELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS--SCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC--CceeeecchhhccccccCCceeEE
Confidence 31 111 123455789999999988888777666666666421100 111111 11234578999
Q ss_pred ecC--C-eEEEEecCCeEEEEeCCCceeEEeeccCCC----CCCccEEEEEECCCCCEEEEEecCc-EEEEE
Q psy12802 187 WPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPH----YKEREFTVACSSPSGQAVVVGSYDN-IKLFA 250 (1637)
Q Consensus 187 ~~~--~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~ 250 (1637)
++| + .++.+..++.+.++|.+|+.+..+....+. ..-...-.++|.|+|+..++ +..+ ++.|.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 988 3 555667788999999999988887765320 11236789999999986555 5555 54443
No 403
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.01 E-value=0.0047 Score=77.55 Aligned_cols=193 Identities=11% Similarity=-0.011 Sum_probs=119.5
Q ss_pred hcCCccchHHHHHHHHHhcCcchHH-HHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCh
Q psy12802 1185 SNGGQEAVEPVVYLWAKSLGGDSAV-RLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQF 1263 (1637)
Q Consensus 1185 ~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~ 1263 (1637)
.+..+..|...+..+...|+.++|. ++|.++ + ...|.....++.++...+..|++
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA-------------------i-----~~~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG-------------------Q-----QCIPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH-------------------H-----HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------------------H-----HhCCCCHHHHHHHHHHHHHhCCH
Confidence 3446667777777777777777776 777544 1 11345677888999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCC----------ChHHHHHHhHHHHHhcCChhhHHHHHHHhCC
Q psy12802 1264 NEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPT----------SIGDILLNQSKCEFENENFSKFETLLLRAHK 1333 (1637)
Q Consensus 1264 ~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 1333 (1637)
++|...|.++ +..+.. .......+.|. ..+.+|...+++....|..+.|..+|.+|-+
T Consensus 395 e~aR~iyek~------l~~l~~------~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 395 PEIETTILSC------IDRIHL------DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHHH------HHHHHH------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHH------HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887 332210 00000111232 2456788888888888999999998888632
Q ss_pred --hHHHHHHH-------HH-cCChHHHHHHHhhhCCCChhHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCHHHHHHH
Q psy12802 1334 --VDLIIEKY-------KM-NHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVEC 1403 (1637)
Q Consensus 1334 --~~~a~~~y-------~~-~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 1403 (1637)
+...-..| .. .++.+.|..+.+..+ . ..|.....+...+......|+.++|...
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L---------------k-~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGL---------------K-YFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH---------------H-HHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------H-HCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 11001111 11 233566665555421 1 1333444466778888889999999999
Q ss_pred HHhcCCcch--hHHHHHHHHHHHHHHhc
Q psy12802 1404 YLKIKNVDV--NLMVKILNEVTQLTLKY 1429 (1637)
Q Consensus 1404 ~~~~~~~~~--~~~~~~~~~a~~~~~~~ 1429 (1637)
|.++....+ .....+|..-++.-.++
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 999886554 24445555444443333
No 404
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.99 E-value=1.2e-05 Score=79.68 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 956 NVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 956 ~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
........+|..+...|++++|+.+|.++... +|. .+.+|..+|.+|...|++++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~lg~~~~~~g~~~~ 70 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML------------------------DHY-DARYFLGLGACRQSLGLYEQ 70 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh------------------------CCc-cHHHHHHHHHHHHHHhhHHH
Confidence 34445567888999999999999888764322 555 78889999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1036 AEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1036 A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
|+.+|.++...+ |..+..+..+|..|..+|++++|+..|.++
T Consensus 71 A~~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 71 ALQSYSYGALMD-------------------------INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHHC-------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988764322 445678889999999999999999987764
No 405
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.99 E-value=0.00054 Score=85.03 Aligned_cols=270 Identities=15% Similarity=0.108 Sum_probs=153.6
Q ss_pred CCEEEEEeC-CCeEEEEEc-CCCCc------cc------------ceEEEEECCCCCe----EEEEECCCeEEEEEcCCC
Q psy12802 23 IVRLRSEGN-VAGIWAWRG-QNGRK------SY------------VVKGLAFSPDSTK----LAVAQSDNIIFIYKLGDD 78 (1637)
Q Consensus 23 g~~la~~~~-d~~i~vwd~-~~~~h------~~------------~V~~~~~spd~~~----la~~~~d~~i~iw~~~~~ 78 (1637)
+..|.+++. ++.|+-+|. .+|+. .. ....++++|++.. |++++.|+.|.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 344555555 677888887 66661 10 1234566665555 888889999999999886
Q ss_pred CCCceeEeeccCC-C--CCEEE-EEEcCCCCEEEEe------CCCcEEEEEcCCCce-eeecccCC--------------
Q psy12802 79 WGDKKVICNKFIQ-Q--CPVTT-MVWLADGPIIYGQ------SDGKIKAAHVKANKT-QTLYASNS-------------- 133 (1637)
Q Consensus 79 ~~~~~~~~~~~~~-~--~~v~~-v~~s~~~~l~~~~------~d~~v~vwd~~~~~~-~~~~~~~~-------------- 133 (1637)
. .+-...... . ..+++ ... .++.+++++ .++.|+.+|.++|+. -.+.....
T Consensus 142 ~---~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 E---TVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp C---EEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred C---EEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 2 111111110 0 01111 011 145555544 379999999999987 22221110
Q ss_pred -----------------------cE-EEEEEecCCCeEEEEeCCC----------------cEEEEEecCCCCccccccc
Q psy12802 134 -----------------------FV-VALCLNVRGAGVLSGHADG----------------SIVRYYVTEDASNFDQQQG 173 (1637)
Q Consensus 134 -----------------------~v-~~l~~s~~g~~l~s~~~dg----------------~i~iwd~~~~~~g~~~~~~ 173 (1637)
.+ ..+++.++...++.++.++ +|.-+|..+. +.+.
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-----~~~W 292 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-----EAKF 292 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-----CEEE
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-----ceee
Confidence 01 1456677777888777653 7888888773 3333
Q ss_pred ccc--cCC-------CCcEEEEe---cC---CeEEEEecCCeEEEEe-CCCceeEEeeccCCC--------CCCcc----
Q psy12802 174 RVV--QHP-------VPPYALSW---PA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPH--------YKERE---- 225 (1637)
Q Consensus 174 ~~~--~~~-------~~v~~~~~---~~---~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~--------~~~~~---- 225 (1637)
.+. .|. ..+.-+.. .. ..++.++.+|.+.++| .+|+.+......... ....+
T Consensus 293 ~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 372 (599)
T 1w6s_A 293 GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDP 372 (599)
T ss_dssp EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECG
T ss_pred EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecc
Confidence 322 121 11122232 12 2466688999999999 899988776532100 00001
Q ss_pred ----------------------EEEEEECCCCCEEEEEec---------------------------------------C
Q psy12802 226 ----------------------FTVACSSPSGQAVVVGSY---------------------------------------D 244 (1637)
Q Consensus 226 ----------------------i~~~~~sp~g~~l~~~~~---------------------------------------d 244 (1637)
-..++++|+..++.+... .
T Consensus 373 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~ 452 (599)
T 1w6s_A 373 EYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGL 452 (599)
T ss_dssp GGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCC
T ss_pred ccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCc
Confidence 124567777776655421 2
Q ss_pred c-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeC
Q psy12802 245 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG 307 (1637)
Q Consensus 245 ~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~ 307 (1637)
+ +..||..+++..|...... +..+-.....+..+++++.||.++.||..+++.+++.
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~------~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERF------AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCCEEeEecCCC------CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 3 6667777776667543211 1111111225677888999999999999999887764
No 406
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=5.5e-05 Score=73.07 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHH
Q psy12802 1133 LDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLL 1212 (1637)
Q Consensus 1133 ~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 1212 (1637)
.+..+..+|..+...|+|++|+.+|.++ +...+.+..++..+|..+.+.|++++|++.|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a---------------------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEM---------------------IKRAPEDARGYSNRAAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3567899999999999999999999998 5555566677888898988888888888888
Q ss_pred HHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1213 NRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1213 ~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.++ + ...|..+.+++.+|..+...|++++|+..|.++
T Consensus 62 ~~a-------------------l-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 62 NKA-------------------I-----EKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHH-------------------H-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-------------------H-----HhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 655 1 124667889999999999999999999999988
No 407
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.99 E-value=0.00024 Score=88.54 Aligned_cols=267 Identities=13% Similarity=0.126 Sum_probs=151.3
Q ss_pred CCEEEEEeC-CCeEEEEEc-CCCCc------cc--c----------eEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCc
Q psy12802 23 IVRLRSEGN-VAGIWAWRG-QNGRK------SY--V----------VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDK 82 (1637)
Q Consensus 23 g~~la~~~~-d~~i~vwd~-~~~~h------~~--~----------V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~ 82 (1637)
+..+.+++. ++.|+-+|. .+|+. .. . -..++. ++..|++++.|+.|..+|..++....
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 344555555 677888888 67661 10 0 011222 35678888889999999998862111
Q ss_pred eeEeeccCCC--CCEEE-EEEcCCCCEEEEeC------CCcEEEEEcCCCce-eeecccCC-------------------
Q psy12802 83 KVICNKFIQQ--CPVTT-MVWLADGPIIYGQS------DGKIKAAHVKANKT-QTLYASNS------------------- 133 (1637)
Q Consensus 83 ~~~~~~~~~~--~~v~~-v~~s~~~~l~~~~~------d~~v~vwd~~~~~~-~~~~~~~~------------------- 133 (1637)
+. ....+. ..+.+ ... .++.+++++. ++.|..+|.++|+. -.+.....
T Consensus 140 ~~--~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EV--EVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EE--ECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred Ee--cCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 11 111110 01111 001 1455555554 78999999999987 22221110
Q ss_pred -------------------cEEEEEEecCCCeEEEEeCC----------------CcEEEEEecCCCCcccccccccc--
Q psy12802 134 -------------------FVVALCLNVRGAGVLSGHAD----------------GSIVRYYVTEDASNFDQQQGRVV-- 176 (1637)
Q Consensus 134 -------------------~v~~l~~s~~g~~l~s~~~d----------------g~i~iwd~~~~~~g~~~~~~~~~-- 176 (1637)
....+++.++...+..++.+ ++|..+|..+. +.+....
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-----~~~W~~~~~ 291 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-----MAKWGYQKT 291 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-----CEEEEEESS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-----cEEEEecCC
Confidence 00235667776677766642 25888888763 3333322
Q ss_pred cC--------CCCcEEEEec-CC----eEEEEecCCeEEEEe-CCCceeEEeeccCCC--------CCCccE--------
Q psy12802 177 QH--------PVPPYALSWP-AG----YILAAGSDRIVTIYE-SDGRVHRIFDYTAPH--------YKEREF-------- 226 (1637)
Q Consensus 177 ~~--------~~~v~~~~~~-~~----~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~--------~~~~~i-------- 226 (1637)
.| ..++. +... .+ .++.++.+|.+.++| .+|+.+..+...... ....++
T Consensus 292 ~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 370 (571)
T 2ad6_A 292 PHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATR 370 (571)
T ss_dssp TTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCC
T ss_pred CCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCC
Confidence 12 12221 2211 22 356788899999999 899988776543100 000111
Q ss_pred ------------------EEEEECCCCCEEEEEec-------------------------------------Cc-EEEEE
Q psy12802 227 ------------------TVACSSPSGQAVVVGSY-------------------------------------DN-IKLFA 250 (1637)
Q Consensus 227 ------------------~~~~~sp~g~~l~~~~~-------------------------------------d~-i~i~~ 250 (1637)
..++++|++..+.+.+. ++ +..||
T Consensus 371 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D 450 (571)
T 2ad6_A 371 MDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFD 450 (571)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEEC
T ss_pred CCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEE
Confidence 24578888887777643 24 77788
Q ss_pred eCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeee
Q psy12802 251 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 306 (1637)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~ 306 (1637)
..+++..|...... .+.+..+...+..+++++.||.|+.||..+++.+++
T Consensus 451 ~~tG~~~W~~~~~~------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 451 LTTGKAKWTKWEKF------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp TTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEecCCC------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 77777777543221 111122223466788899999999999998887765
No 408
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=4.2e-05 Score=88.76 Aligned_cols=145 Identities=13% Similarity=0.047 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC--HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCH
Q psy12802 1073 GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ--YENMIKLVRNYHPDLLDTTLLHLAQECEESKNY 1150 (1637)
Q Consensus 1073 ~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 1150 (1637)
+.....+..+|..|..+|+|++|+..|.++- .+.-.... .+.+..+- +....+|..+|.+|...|+|
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al------~~~p~~~~~~~~~~~~~~-----~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIV------SWLEYESSFSNEEAQKAQ-----ALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHTTTCCCCCSHHHHHHH-----HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHhhccccCChHHHHHHH-----HHHHHHHHHHHHHHHHcCCH
Confidence 5567889999999999999999999987742 21111100 01111110 12257899999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCC
Q psy12802 1151 KQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQ 1230 (1637)
Q Consensus 1151 ~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~ 1230 (1637)
++|+.+|.++ +...+.+..++..+|.++...|++++|+..|.++
T Consensus 213 ~~A~~~~~~a---------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a--------------- 256 (336)
T 1p5q_A 213 SAAIESCNKA---------------------LELDSNNEKGLSRRGEAHLAVNDFELARADFQKV--------------- 256 (336)
T ss_dssp HHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH---------------------HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------
Confidence 9999999998 4555566778888999999999998888888655
Q ss_pred hHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHH-HHHHc
Q psy12802 1231 FDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAET-QFIKA 1273 (1637)
Q Consensus 1231 ~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~a 1273 (1637)
+ ...|..+.++..++..+...|++++|.. .|.++
T Consensus 257 ----l-----~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 257 ----L-----QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp ----H-----HHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----H-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1256678899999999999999999954 45443
No 409
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.0012 Score=78.98 Aligned_cols=232 Identities=9% Similarity=0.042 Sum_probs=134.1
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECC-C----eEEEEEcCCCCC
Q psy12802 13 VLQDDVFNL-DIVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSD-N----IIFIYKLGDDWG 80 (1637)
Q Consensus 13 ~i~~~~~sp-dg~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d-~----~i~iw~~~~~~~ 80 (1637)
....++++| ++..|.+....+.|+.+|..++. ......+++|+|+|++|.++... + .+.+.+......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457899998 45555555444789999987654 23457899999999977766542 1 344444333221
Q ss_pred CceeEeeccCCCCCEEEEEEcC-CCC-EEEEeCCCcEEEEEcCCCceeeecc--cCCcEEEEEEecCCCeEEEE-eCCCc
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLA-DGP-IIYGQSDGKIKAAHVKANKTQTLYA--SNSFVVALCLNVRGAGVLSG-HADGS 155 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~-~~~-l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~l~~s~~g~~l~s~-~~dg~ 155 (1637)
....+. . .....+++++| +|. +++-..++.|..++..++....+.. .......++|+|+|++|.++ ...+.
T Consensus 218 ~~~~l~-~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 218 VITELT-K---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp SEEEEE-E---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeec-c---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 112222 1 23345678999 667 5555677899999998876522222 22457899999999955544 55788
Q ss_pred EEEEEecCCCCccccc--ccccccC---------------CCCcE-EEEec--------C-CeEEE-EecCCeEEEEeCC
Q psy12802 156 IVRYYVTEDASNFDQQ--QGRVVQH---------------PVPPY-ALSWP--------A-GYILA-AGSDRIVTIYESD 207 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~--~~~~~~~---------------~~~v~-~~~~~--------~-~~l~~-~~~d~~i~iwd~~ 207 (1637)
|..++..... + .. ...+.+. -..+. .+... + +.|.+ -...+.|+.++.+
T Consensus 294 I~~~~~d~~~-~--~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~ 370 (430)
T 3tc9_A 294 ILRSDYDWKT-K--RLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ 370 (430)
T ss_dssp EEEEEEETTT-T--EECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT
T ss_pred EEEEeCCccc-c--cccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC
Confidence 9998876321 0 10 1111111 11233 44442 2 23444 3456788888877
Q ss_pred CceeEEeeccC----C--------CCCCccEEEEEECCCCCEEEEEe-cCc-EEEEEe
Q psy12802 208 GRVHRIFDYTA----P--------HYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAW 251 (1637)
Q Consensus 208 ~~~~~~~~~~~----~--------~~~~~~i~~~~~sp~g~~l~~~~-~d~-i~i~~~ 251 (1637)
|......-... + ...-.....++++|++..|.++. .++ |+.++.
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 75443332100 0 00112578999999644444444 444 776654
No 410
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.98 E-value=0.00031 Score=74.92 Aligned_cols=182 Identities=12% Similarity=0.010 Sum_probs=118.6
Q ss_pred cceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCc
Q psy12802 47 YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANK 124 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~ 124 (1637)
.-..++.|+. +....+.+.+|.|+++|+.++....+. .+...--..+++ ++. ++....++.+.++|.++.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~----l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME----RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE----ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE----CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCc
Confidence 3457888873 555566777889999999986332222 111111123444 444 5556678999999999998
Q ss_pred e-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc--CC---CCcEEEEecCCeEEEEe-c
Q psy12802 125 T-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ--HP---VPPYALSWPAGYILAAG-S 197 (1637)
Q Consensus 125 ~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~--~~---~~v~~~~~~~~~l~~~~-~ 197 (1637)
. .++.. ...-.. +++||+.|+.+..++.|.++|..+. +.+.++.- +. ..+..+.|..+.+.+.. .
T Consensus 128 ~~~ti~~-~~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~-----~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~ 199 (268)
T 3nok_A 128 RERTTRY-SGEGWG--LCYWNGKLVRSDGGTMLTFHEPDGF-----ALVGAVQVKLRGQPVELINELECANGVIYANIWH 199 (268)
T ss_dssp EEEEEEC-SSCCCC--EEEETTEEEEECSSSEEEEECTTTC-----CEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred EEEEEeC-CCceeE--EecCCCEEEEECCCCEEEEEcCCCC-----eEEEEEEeCCCCcccccccccEEeCCEEEEEECC
Confidence 8 44443 222233 3467888888888899999998763 34444332 22 24467788777666655 5
Q ss_pred CCeEEEEe-CCCceeEEeeccC--------CCCCCccEEEEEECCCCCEEEEEec
Q psy12802 198 DRIVTIYE-SDGRVHRIFDYTA--------PHYKEREFTVACSSPSGQAVVVGSY 243 (1637)
Q Consensus 198 d~~i~iwd-~~~~~~~~~~~~~--------~~~~~~~i~~~~~sp~g~~l~~~~~ 243 (1637)
++.|.+.| .+|+.+..++... ......-.+.++++|+++.|.+.+.
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 78999999 8999999888641 1023346789999998776665543
No 411
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.97 E-value=3.1e-05 Score=84.37 Aligned_cols=170 Identities=10% Similarity=-0.074 Sum_probs=113.2
Q ss_pred cCCHHHHHHHHHhhC--CCchHHHHHHH-------HHHHHHccCHHHHHHHHHHccC-----------------------
Q psy12802 1115 QRQYENMIKLVRNYH--PDLLDTTLLHL-------AQECEESKNYKQAEKYYLDCNE----------------------- 1162 (1637)
Q Consensus 1115 ~~~~~~a~~~~~~~~--~~~~~~~~~~l-------a~~~~~~g~~~~A~~~y~~a~~----------------------- 1162 (1637)
.+++..|.+.+.+.. .+...++|+.+ +..++..+++.+|+..+.++-.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 344444555554421 24557889888 8899999999999888888711
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhcCCcc----chHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChH
Q psy12802 1163 ------WKLAIKMYRSLNLWEDAYRIALSNGGQE----AVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFD 1232 (1637)
Q Consensus 1163 ------~~~~~~~y~~~g~~~~A~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~ 1232 (1637)
+...+.+|...|++++|.+++....... +.+.++. .+.+.++|+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~--------------------------l~~~~~r~~ 152 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV--------------------------VYGAAERWT 152 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH--------------------------HHHHTTCHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH--------------------------HHHHcCCHH
Confidence 1224566777788888877776543211 2233333 344555555
Q ss_pred HHHHHHHhcCCC--C--cHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHhhhCCCChHHHH
Q psy12802 1233 FAFELAKIGMKS--K--LEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDIL 1308 (1637)
Q Consensus 1233 ~a~~l~~~~~~~--~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~~a~~~~~~~~~~~~ 1308 (1637)
+|+..++..... . ...+++.+|..+...|++++|+..|.++. . ...+|...++++
T Consensus 153 dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~------~---------------g~~~P~~~~da~ 211 (282)
T 4f3v_A 153 DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN------D---------------SPAGEACARAIA 211 (282)
T ss_dssp HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------T---------------STTTTTTHHHHH
T ss_pred HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh------c---------------CCCCccccHHHH
Confidence 555555433321 1 24589999999999999999999999871 0 111244467888
Q ss_pred HHhHHHHHhcCChhhHHHHHHHh
Q psy12802 1309 LNQSKCEFENENFSKFETLLLRA 1331 (1637)
Q Consensus 1309 ~~~a~~~~~~~~~~~A~~~~~~a 1331 (1637)
+.+|..+..+|+.++|...|.++
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999988774
No 412
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.94 E-value=0.00038 Score=74.36 Aligned_cols=191 Identities=11% Similarity=0.092 Sum_probs=117.4
Q ss_pred CCCCC--EEEEEEcCCCC-EEEEeCCC--cEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEec
Q psy12802 90 IQQCP--VTTMVWLADGP-IIYGQSDG--KIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVT 162 (1637)
Q Consensus 90 ~~~~~--v~~v~~s~~~~-l~~~~~d~--~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~ 162 (1637)
+|... ...+.|+ ++. +.+++.+| .|+++|+++++. ..+.. ..........+++..|...+ .++.+.+||..
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 45433 4788998 677 66776665 899999999998 44432 22333333334455665555 48899999998
Q ss_pred CCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEE
Q psy12802 163 EDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 241 (1637)
Q Consensus 163 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 241 (1637)
+. +.+.++... ..-..+++..+.++.+..++.|.++| .+.+.+.++........-..++.+.|. +|+..+..
T Consensus 116 t~-----~~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 116 NL-----RQVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp TC-----CEEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred cC-----cEEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 74 555555532 23356777666777666688999999 778888887753210111335557776 67544443
Q ss_pred ecCc-EEEEEeCCCCCc--cccCCCc-----ccCCCcceeEEEEcCCCCEEEEEec
Q psy12802 242 SYDN-IKLFAWSPSKSV--WEEQPNK-----TIPNLYTISALSWKRDGSRIACGGL 289 (1637)
Q Consensus 242 ~~d~-i~i~~~~~~~~~--~~~~~~~-----~~~~~~~i~~l~~spdg~~l~~~~~ 289 (1637)
-.+. |.+.|..+++.. ++..... ..........++|+|+++.|.+.+.
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 3333 777776665432 1111111 1112246689999999888776653
No 413
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.93 E-value=5.1e-05 Score=75.15 Aligned_cols=97 Identities=13% Similarity=-0.009 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRL 1211 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 1211 (1637)
.....+..+|..+...|+|++|+.+|.++ +...+.+..++..+|..+...|++++|+..
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a---------------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQAL---------------------CMLDHYDARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH---------------------HHhCCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34567889999999999999999999998 666667777888899999999999888888
Q ss_pred HHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1212 LNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1212 ~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|.++ + ...|..+..++.+|..|...|++++|+..|.++
T Consensus 75 ~~~a-------------------l-----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 75 YSYG-------------------A-----LMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHH-------------------H-----HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-------------------H-----hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8665 1 125667889999999999999999999999987
No 414
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=2.6e-05 Score=79.65 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 956 NVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 956 ~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
.....+..+|..+...|+|++|+.+|.++... .|+ .+.++..+|.+|...|++++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~p~-~~~~~~~l~~~~~~~g~~~~ 63 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI------------------------APA-NPIYLSNRAAAYSASGQHEK 63 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------STT-CHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCc-CHHHHHHHHHHHHHccCHHH
Confidence 34556678899999999999999888775332 454 67789999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1036 AEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1036 A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
|+..|.++...+ |....++..+|.+|..+|++++|+..|.++
T Consensus 64 A~~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 64 AAEDAELATVVD-------------------------PKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 998887764322 445788999999999999999999987763
No 415
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.92 E-value=0.0011 Score=70.35 Aligned_cols=191 Identities=12% Similarity=0.037 Sum_probs=121.1
Q ss_pred ccceEEEEECCCCCeEEEEECC--CeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcC
Q psy12802 46 SYVVKGLAFSPDSTKLAVAQSD--NIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVK 121 (1637)
Q Consensus 46 ~~~V~~~~~spd~~~la~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~ 121 (1637)
..-..++.|++ +....+.+.+ +.|+++|+.++ +++..... ..........+++. ++....++.+.++|.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg----kv~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG----RILQRAEV-PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC----CEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCC----CEEEEEeC-CCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 34567899987 4444454543 48999999886 33322211 12222222233344 5556678999999999
Q ss_pred CCce-eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCccccccccccc--CC---CCcEEEEecCCeEEEE
Q psy12802 122 ANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ--HP---VPPYALSWPAGYILAA 195 (1637)
Q Consensus 122 ~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~--~~---~~v~~~~~~~~~l~~~ 195 (1637)
+.+. .++.... .-. .+++++..|+++..++.|.++|..+. +.+.++.- +. ..+..+.|..+.+.+.
T Consensus 94 tl~~~~ti~~~~-~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~-----~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 94 TLTPRARFRYPG-EGW--ALTSDDSHLYMSDGTAVIRKLDPDTL-----QQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTEEEEEEECSS-CCC--EEEECSSCEEEECSSSEEEEECTTTC-----CEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEeCCC-Cce--EEeeCCCEEEEECCCCeEEEEeCCCC-----eEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 9988 4444322 223 33467888888888899999998764 33444332 22 3456778877766665
Q ss_pred e-cCCeEEEEe-CCCceeEEeeccCC--------CCCCccEEEEEECCCCCEEEEEecCcEEEEE
Q psy12802 196 G-SDRIVTIYE-SDGRVHRIFDYTAP--------HYKEREFTVACSSPSGQAVVVGSYDNIKLFA 250 (1637)
Q Consensus 196 ~-~d~~i~iwd-~~~~~~~~~~~~~~--------~~~~~~i~~~~~sp~g~~l~~~~~d~i~i~~ 250 (1637)
. .+..|.+.| .+|+.+..++...- .....-.+.++++|+++.|.+.+..-=++|.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~ 230 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE 230 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence 5 578999999 89999999885421 0123467899999988877776654433333
No 416
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.92 E-value=0.00081 Score=86.10 Aligned_cols=248 Identities=11% Similarity=0.030 Sum_probs=132.1
Q ss_pred EEEECC-CCCeEEEEECCC-----------eEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEe-CCCcEE
Q psy12802 51 GLAFSP-DSTKLAVAQSDN-----------IIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQ-SDGKIK 116 (1637)
Q Consensus 51 ~~~~sp-d~~~la~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~-~d~~v~ 116 (1637)
++++.| +++.++.|+.++ .+.+||..++.-.. .......+.....++++.++|+ +++|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-CEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-CcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 567777 888888887543 57889987742111 1111112333344577889999 77776 456899
Q ss_pred EEEcCCCceeeeccc--CCcEEEEEEecCCCeEEEEe-CC-----CcEEEEEecCCCCcccccc-----ccccc------
Q psy12802 117 AAHVKANKTQTLYAS--NSFVVALCLNVRGAGVLSGH-AD-----GSIVRYYVTEDASNFDQQQ-----GRVVQ------ 177 (1637)
Q Consensus 117 vwd~~~~~~~~~~~~--~~~v~~l~~s~~g~~l~s~~-~d-----g~i~iwd~~~~~~g~~~~~-----~~~~~------ 177 (1637)
+||..+++...+..- ...-.+++..++|+.++.|+ .+ ..+.+||..+... ..+ ..+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W---~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW---TSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE---EEETTSCSGGGCCCCTTGG
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc---eeCCCccccccccccccce
Confidence 999998876443221 11223456668999999998 34 5689999876432 111 00110
Q ss_pred --CCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCC----CCCCccEEEEEEC-CCCCEEEEEecCc----
Q psy12802 178 --HPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAP----HYKEREFTVACSS-PSGQAVVVGSYDN---- 245 (1637)
Q Consensus 178 --~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~----~~~~~~i~~~~~s-p~g~~l~~~~~d~---- 245 (1637)
+...+..+....+.++..+....+..|| .+............ ......-.++.|. .+++.+++|+.+.
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 1111111111111222222334567788 33332222211100 0011123444454 4778888887421
Q ss_pred ------EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecC-----------CcEEEEEccccc
Q psy12802 246 ------IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-----------GSVELFESVLKR 302 (1637)
Q Consensus 246 ------i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d-----------g~v~iwd~~~~~ 302 (1637)
..++-++.....|.............-.+....|+|+.+++|+.+ ..+.+||..+.+
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 134445555555643221111222223456677899999998864 457888886544
No 417
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.89 E-value=0.0011 Score=84.65 Aligned_cols=58 Identities=5% Similarity=-0.024 Sum_probs=45.8
Q ss_pred cceEEEEEccCCcceEEecccCCccEEEeCcCcceeEeecccceEEEEeccccceeee
Q psy12802 568 LHTICVIDLITNLPTLHINHDSKIDWLELNETAHKLLYRDKKMRLTLLDIRTSEKHNI 625 (1637)
Q Consensus 568 ~~~i~v~dl~~~~~~~~~~~~~~i~~l~~s~~g~~L~~~~~~~~~~l~d~~t~~~~~l 625 (1637)
++.|..||+.+|+.+....+........+...+..+++++.++.++.||..+++.+..
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 4789999999999888776555554445555677888899999999999999987643
No 418
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.87 E-value=0.00012 Score=70.83 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
...+..+|..+...|++++|+.+|.++ +.....+..++..+|..+...|++++|++.|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~---------------------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKA---------------------IELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHH---------------------HHcCCCCHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 567889999999999999999999988 33334445567778888888888888887776
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHH
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAE 1293 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~ 1293 (1637)
++ ++ ..+..+.++..+|..+...|++++|+..|.++
T Consensus 71 ~~-------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-------------------- 106 (131)
T 2vyi_A 71 RA-------------------IC-----IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA-------------------- 106 (131)
T ss_dssp HH-------------------HH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HH-------------------Hh-----cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH--------------------
Confidence 54 11 13456788999999999999999999998887
Q ss_pred HHHhhhCCCChHHHHHHhHHHHHhcCCh
Q psy12802 1294 RIANEHDPTSIGDILLNQSKCEFENENF 1321 (1637)
Q Consensus 1294 ~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 1321 (1637)
....|. .+.++..++..+...|++
T Consensus 107 ---~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 107 ---LELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---HHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred ---HhcCcc-chHHHHHHHHHHHHHhcC
Confidence 233454 356777888887777765
No 419
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=2.6e-05 Score=74.61 Aligned_cols=92 Identities=11% Similarity=-0.028 Sum_probs=73.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12802 962 EEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYS 1041 (1637)
Q Consensus 962 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 1041 (1637)
..+|..+...|++++|+.+|.++... +|+ .+.+|..+|.++...|++++|+..|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK------------------------EPE-REEAWRSLGLTQAENEKDGLAIIALN 75 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------------------STT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46788888888888888887665332 565 78899999999999999999999888
Q ss_pred hccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy12802 1042 HCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIG 1103 (1637)
Q Consensus 1042 ~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~ 1103 (1637)
++...+ |....++..+|.+|...|++++|+..|.++-
T Consensus 76 ~al~l~-------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 76 HARMLD-------------------------PKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHC-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764332 4456788999999999999999999988753
No 420
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.86 E-value=0.00012 Score=74.56 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRL 1211 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 1211 (1637)
.....+..+|..+...|+|++|+.+|.++ +.....+..++..+|..+...|++++|+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a---------------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQA---------------------LSIAPANPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCcCHHHHHHHHHHHHHccCHHHHHHH
Confidence 34678899999999999999999999998 444555667788889888888888888888
Q ss_pred HHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1212 LNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1212 ~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|.++ + ...+..+.+++.+|..|...|++++|+..|.++
T Consensus 68 ~~~a-------------------l-----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 68 AELA-------------------T-----VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHH-------------------H-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-------------------H-----HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8654 1 124567889999999999999999999999988
No 421
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.86 E-value=5.8e-05 Score=73.59 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=75.1
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHH
Q psy12802 1131 DLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVR 1210 (1637)
Q Consensus 1131 ~~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 1210 (1637)
+....++..+|..+...|++++|+.+|.++- .....+..++..+|..+...|++++|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI---------------------KRNPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH---------------------TTCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HcCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 4456789999999999999999999999982 2223344456677777777777777777
Q ss_pred HHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1211 LLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1211 ~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.|.++ ++ ..+..+.++..+|..+...|++++|+..|.++
T Consensus 72 ~~~~a-------------------~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 72 DCEEC-------------------IQ-----LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHH-------------------HH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH-------------------HH-----hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77544 11 13456788999999999999999999999887
No 422
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=6.3e-05 Score=76.60 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
...+...|..+...|+|++|+.+|.++-....-. .......+............++..+|.++.+.|++++|+..+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTL---ILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---HHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5678899999999999999999999983321110 0001110000001122334466778888888888777777775
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
++ ++ ..|..+.+++.+|..|...|++++|+..|.++
T Consensus 88 ~a-------------------l~-----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 88 EV-------------------LK-----REETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HH-------------------HH-----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-------------------Hh-----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 44 11 25678899999999999999999999999988
No 423
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.85 E-value=0.00012 Score=71.75 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
+.....+..+|..+...|++++|+.+|.++... .|. .+.++..+|.++...|+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------------~~~-~~~~~~~l~~~~~~~~~~~ 60 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR------------------------NPL-VAVYYTNRALCYLKMQQPE 60 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------------------------CcC-cHHHHHHHHHHHHHhcCHH
Confidence 344556678899999999999998888775332 444 6778999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+|+..|.++.... |....++..+|..+...|++++|+..|.++
T Consensus 61 ~A~~~~~~al~~~-------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 61 QALADCRRALELD-------------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9988887754322 345678999999999999999999987764
No 424
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.83 E-value=0.0036 Score=71.36 Aligned_cols=226 Identities=12% Similarity=0.084 Sum_probs=129.7
Q ss_pred cceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EEEEeCC-C-cEEEEEcCCC
Q psy12802 47 YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-IIYGQSD-G-KIKAAHVKAN 123 (1637)
Q Consensus 47 ~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~~~~~d-~-~v~vwd~~~~ 123 (1637)
....+++|+|+|+.+++-..++.|..||..+. ..... .....+.++++.++|+ +++.... + .|..+|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~---~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHA---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEE---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEE---eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence 45678999999986666667889988887652 11111 1235688999999999 5544332 2 4777788888
Q ss_pred ceeeecc--cCCcEEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccc------c--ccccCCCCcEEEEecCCeE-
Q psy12802 124 KTQTLYA--SNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ------G--RVVQHPVPPYALSWPAGYI- 192 (1637)
Q Consensus 124 ~~~~~~~--~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~------~--~~~~~~~~v~~~~~~~~~l- 192 (1637)
+...+.. .......++..+++..+++-..++.|.++|..... + ... . .....-..+..++...+.+
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~-~--~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly 182 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS-G--SIWLEHPMLARSNSESVFPAANGLKRFGNFLY 182 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE-E--EEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc-E--eEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence 7643322 22344566666655555555468888888865321 0 110 0 0111122445563333444
Q ss_pred EEEecCCeEEEEeCC--Cce--eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EEEEEeCCCCCccccCCCcccC
Q psy12802 193 LAAGSDRIVTIYESD--GRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 267 (1637)
Q Consensus 193 ~~~~~d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~i~~~~~~~~~~~~~~~~~~~ 267 (1637)
++-+..+.|..|+.+ |.. ...+.. ......++++++|++.++....+ |.+++.+ +... .. .....
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~-~~--~~~~~ 252 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT-II--AQAEQ 252 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE-EE--ECGGG
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE-EE--eeccc
Confidence 445567889999843 332 111210 01345689999998766665555 8887754 2110 00 00111
Q ss_pred CCcceeEEEEc---CCCCEEEEEecCC
Q psy12802 268 NLYTISALSWK---RDGSRIACGGLCG 291 (1637)
Q Consensus 268 ~~~~i~~l~~s---pdg~~l~~~~~dg 291 (1637)
....+++++|. ||++.|++.+..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 23468899998 8988877666543
No 425
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.83 E-value=0.00017 Score=69.05 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRL 1211 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 1211 (1637)
....++..+|..+...|++++|+.+|.++ +.....+..++..++..+...|++++|+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKA---------------------LELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHHCcCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33578889999999999999999999988 222233445667778888888888888777
Q ss_pred HHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1212 LNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1212 ~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|.++- ...+..+..+..+|..+...|++++|+..|.++
T Consensus 66 ~~~~~------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 66 YQKAL------------------------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHH------------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------------------------HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 75541 113445778889999999999999999988887
No 426
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.83 E-value=0.00018 Score=69.67 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
....+..+|..+...|++++|+.+|.++... .+....++..+|..+...|++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~~~~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-------------------------NPANAVYFCNRAAAYSKLGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------------------------CCCCHHHHHHHHHHHHHhhchHHH
Confidence 5667888899999999999888888775322 133356778888888888888888
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+..|.++ ++ ..| ....++..+|..+...|++++|..+|.++
T Consensus 66 ~~~~~~~-------------------~~----~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 66 VQDCERA-------------------IC----IDP-AYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHH-------------------HH----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------Hh----cCc-cCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8876553 11 122 22467788888888888888888888887
No 427
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.80 E-value=0.0018 Score=77.36 Aligned_cols=229 Identities=9% Similarity=0.036 Sum_probs=133.1
Q ss_pred ceeEEEEcCC---CCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCC-----eEEEEEcCCC
Q psy12802 13 VLQDDVFNLD---IVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDN-----IIFIYKLGDD 78 (1637)
Q Consensus 13 ~i~~~~~spd---g~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~-----~i~iw~~~~~ 78 (1637)
....++|+|+ |.+.++-. .+.|+.+|..++. ......+++|+|+|+ |.++...+ .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~-~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQ-RDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECB-TSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeC-CCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999995 55444433 3789999987655 234588999999999 55444321 2333333222
Q ss_pred CCCceeEeeccCCCCCEEEEEEcC-CCCE-EEEeCCCcEEEEEcCCCce-eeeccc--CCcEEEEEEecCCCeEEEEe-C
Q psy12802 79 WGDKKVICNKFIQQCPVTTMVWLA-DGPI-IYGQSDGKIKAAHVKANKT-QTLYAS--NSFVVALCLNVRGAGVLSGH-A 152 (1637)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~s~-~~~l-~~~~~d~~v~vwd~~~~~~-~~~~~~--~~~v~~l~~s~~g~~l~s~~-~ 152 (1637)
......+. .......++++| +|.+ ++-..++.|+.+|..++.. ..+... ......++|+|+|+.|.++. .
T Consensus 218 ~~~~~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 218 FTERLSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp TCCEEEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred eecccccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 11111111 223445678899 6664 4555678899999987766 333222 22335799999999655554 5
Q ss_pred CCcEEEEEecCCCCccccc--cccccc---------------CCCCcEEEEe---------cCC--eEEEEecCCeEEEE
Q psy12802 153 DGSIVRYYVTEDASNFDQQ--QGRVVQ---------------HPVPPYALSW---------PAG--YILAAGSDRIVTIY 204 (1637)
Q Consensus 153 dg~i~iwd~~~~~~g~~~~--~~~~~~---------------~~~~v~~~~~---------~~~--~l~~~~~d~~i~iw 204 (1637)
.+.|..++..... + .. ...+.+ .-..+..+++ .++ .+++-...+.|+.+
T Consensus 294 ~~~I~~~~~d~~~-~--~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 294 KHCIYRVDYNRET-G--KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp TTEEEEEEBCTTT-C--CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCC-c--ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 7889998875321 0 11 011111 1234677888 553 44444557889999
Q ss_pred eCCCceeEEeecc-C----C--------CCCCccEEEEEEC-CCCCEEEEEecCc-EEEEEe
Q psy12802 205 ESDGRVHRIFDYT-A----P--------HYKEREFTVACSS-PSGQAVVVGSYDN-IKLFAW 251 (1637)
Q Consensus 205 d~~~~~~~~~~~~-~----~--------~~~~~~i~~~~~s-p~g~~l~~~~~d~-i~i~~~ 251 (1637)
+.+|... ++... . + ...-.....++++ ++|.++++-..++ |+.++.
T Consensus 371 ~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 371 TPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 9888544 33321 0 0 0011347889999 5665555544444 777664
No 428
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.80 E-value=0.29 Score=65.62 Aligned_cols=265 Identities=6% Similarity=-0.026 Sum_probs=134.9
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------------cccceEEEEECCC----CCeEEEEE---CCCeEEEE
Q psy12802 15 QDDVFNLDIVRLRSEGNVAGIWAWRGQNGR--------------KSYVVKGLAFSPD----STKLAVAQ---SDNIIFIY 73 (1637)
Q Consensus 15 ~~~~~spdg~~la~~~~d~~i~vwd~~~~~--------------h~~~V~~~~~spd----~~~la~~~---~d~~i~iw 73 (1637)
+++++-.+| +|..|+..|.=.+|.+.... .-++|..++.... ...|++++ .+|++++.
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l 408 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII 408 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence 455555555 66777666654555544321 2357877777432 23566554 56889988
Q ss_pred EcCCCCCCceeEeeccCCCCCEEEEEEcC---CCC-EEEEeCCCcEEEEEcCCCceeee--cccCCcEEEEEEec-CCCe
Q psy12802 74 KLGDDWGDKKVICNKFIQQCPVTTMVWLA---DGP-IIYGQSDGKIKAAHVKANKTQTL--YASNSFVVALCLNV-RGAG 146 (1637)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~-l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~l~~s~-~g~~ 146 (1637)
.-.-+ .........+....++.+.... .+. ++.+..+.+ .|+.+.......+ .+.......+.... .+..
T Consensus 409 r~Gi~--~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ 485 (1158)
T 3ei3_A 409 RNGIG--IHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQ 485 (1158)
T ss_dssp EESBC--EEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEEEEECCTTCCSSSCEEEEEEETTTE
T ss_pred ecCCC--EEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCcccccccccccCCCCcEEEEEcCCCe
Confidence 75542 1111122223334555555432 223 555555555 5665543333211 11111111111111 1123
Q ss_pred EEEEeCCCcEEEEEecCCCCccccccccccc-CCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCc
Q psy12802 147 VLSGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER 224 (1637)
Q Consensus 147 l~s~~~dg~i~iwd~~~~~~g~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~ 224 (1637)
++=.+. ..|++.+.... ..+..+.. ....|...+.++..++.++ ++.+.+++ .+++.. ..... ..+.
T Consensus 486 ivQVt~-~~Irli~~~~~-----~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~-~~~~~---~l~~ 554 (1158)
T 3ei3_A 486 LIQITS-ASVRLVSQEPK-----ALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELR-QISHT---EMEH 554 (1158)
T ss_dssp EEEEES-SCEEEEESSSC-----CEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEE-EEEEE---ECSS
T ss_pred EEEEec-CEEEEEECCCC-----eEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCcee-eeccc---CCCC
Confidence 332222 34566654421 23333332 3346777777766666664 67888887 444322 22211 2345
Q ss_pred cEEEEEECCC------CCEEEEEec-Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEc--CCCCEEEEEecCCcEE
Q psy12802 225 EFTVACSSPS------GQAVVVGSY-DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK--RDGSRIACGGLCGSVE 294 (1637)
Q Consensus 225 ~i~~~~~sp~------g~~l~~~~~-d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdg~~l~~~~~dg~v~ 294 (1637)
.|.|+++.|. ++++++|.. |+ ++|++++.-...... .......+.++.+. ....+|.+|-.||.+.
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~----~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE----MLGGEIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE----ECCSSCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE----ECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 7999999864 479999997 77 999998754332211 11111223333322 2345788999999986
Q ss_pred EEEc
Q psy12802 295 LFES 298 (1637)
Q Consensus 295 iwd~ 298 (1637)
-+.+
T Consensus 631 ~~~~ 634 (1158)
T 3ei3_A 631 YFGL 634 (1158)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 429
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.80 E-value=0.0021 Score=68.09 Aligned_cols=190 Identities=8% Similarity=0.024 Sum_probs=115.3
Q ss_pred CCC--CCEEEEEEcCCCC-EEEEeCC--CcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEE-eCCCcEEEEEec
Q psy12802 90 IQQ--CPVTTMVWLADGP-IIYGQSD--GKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSG-HADGSIVRYYVT 162 (1637)
Q Consensus 90 ~~~--~~v~~v~~s~~~~-l~~~~~d--~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~ 162 (1637)
+|. .-...+.|++ +. +.+++.+ +.|+++|+.+++. ....- ..........+++..|... -.++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-CCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 553 4567899986 56 5666654 4899999999998 33332 2222222233345555544 458999999988
Q ss_pred CCCCcccccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEE
Q psy12802 163 EDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 241 (1637)
Q Consensus 163 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 241 (1637)
+. +.+.++... ..-+.+++..+.++.+..++.|.++| .+.+.+.++........-..++.+.|. +|+..+..
T Consensus 94 tl-----~~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 94 TL-----TPRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TT-----EEEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred cC-----cEEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 73 555555533 34467777777777766789999999 788888887753210111245556665 66544444
Q ss_pred ecCc-EEEEEeCCCCCc--cccCCCcc------cCCCcceeEEEEcCCCCEEEEEe
Q psy12802 242 SYDN-IKLFAWSPSKSV--WEEQPNKT------IPNLYTISALSWKRDGSRIACGG 288 (1637)
Q Consensus 242 ~~d~-i~i~~~~~~~~~--~~~~~~~~------~~~~~~i~~l~~spdg~~l~~~~ 288 (1637)
-... |.+.|..++... ++...... .........++|+|+++.|.+.+
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 2333 777777665432 11110000 11224678999999988776555
No 430
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.78 E-value=3.1e-05 Score=82.09 Aligned_cols=142 Identities=11% Similarity=0.095 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHH
Q psy12802 1073 GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQ 1152 (1637)
Q Consensus 1073 ~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1152 (1637)
+.....+..+|..+...|+|++|+..|.++-.. .-....+... .+..........++..+|.+|...|+|++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 106 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF------FIHTEEWDDQ--ILLDKKKNIEISCNLNLATCYNKNKDYPK 106 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TTTCTTCCCH--HHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------Hhcccccchh--hHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 345677889999999999999999998774211 0000000000 00000001124688999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChH
Q psy12802 1153 AEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFD 1232 (1637)
Q Consensus 1153 A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~ 1232 (1637)
|+.+|.++ +........++..+|.++...|++++|++.|.++-
T Consensus 107 A~~~~~~a---------------------l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------- 149 (198)
T 2fbn_A 107 AIDHASKV---------------------LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA---------------- 149 (198)
T ss_dssp HHHHHHHH---------------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHH---------------------HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH----------------
Confidence 99999988 33344556677888888888888888888886541
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHH
Q psy12802 1233 FAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAE 1267 (1637)
Q Consensus 1233 ~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 1267 (1637)
...|..+.++..++..+...++..++.
T Consensus 150 --------~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 --------SLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp --------HHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred --------HHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 124556777888888887777776666
No 431
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.78 E-value=0.00011 Score=71.57 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
+.....+..+|..+...|++++|+.+|.++... .|. ...++..+|.+|...|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------~~~-~~~~~~~la~~~~~~~~~~ 67 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR------------------------NPK-DAKLYSNRAACYTKLLEFQ 67 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT------------------------CTT-CHHHHHHHHHHHTTTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------CCC-cHHHHHHHHHHHHHhccHH
Confidence 445556667888888888888888887775432 343 5667788888888888888
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLI 1101 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 1101 (1637)
+|+++|.++.... +....++..+|..+...|++++|+..|.+
T Consensus 68 ~A~~~~~~a~~~~-------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 68 LALKDCEECIQLE-------------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8887777653221 22234455555555555555555555554
No 432
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.78 E-value=0.0044 Score=73.99 Aligned_cols=196 Identities=8% Similarity=0.048 Sum_probs=116.7
Q ss_pred CEEEEEEcCC---CCEEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeCCC----c-EEEEEecCCC
Q psy12802 94 PVTTMVWLAD---GPIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADG----S-IVRYYVTEDA 165 (1637)
Q Consensus 94 ~v~~v~~s~~---~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg----~-i~iwd~~~~~ 165 (1637)
....++|+|+ +.|+++...+.|+.+|..++....+........+++|+++|+ |+++...+ . +...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~-- 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS-- 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG--
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC--
Confidence 4578999995 456655544899999999998877666667799999999999 44444321 2 33332221
Q ss_pred CcccccccccccCCCCcEEEEecC--CeEEEE-ecCCeEEEEeCC-CceeEEeeccCCCCCCccEEEEEECCCCCEEEEE
Q psy12802 166 SNFDQQQGRVVQHPVPPYALSWPA--GYILAA-GSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 241 (1637)
Q Consensus 166 ~g~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 241 (1637)
+ ............+..++++| +.|.++ ..++.|..+|.. |.....+... ........++|+|+|+.|.++
T Consensus 217 -~--~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~---~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 217 -G--FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM---DTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp -T--TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC---SCCSSCEEEEECTTSSEEEEE
T ss_pred -C--eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc---CCCCCcccEEEeCCCCEEEEE
Confidence 1 11001112334566778877 355544 456789999954 6653333221 111223469999999966666
Q ss_pred ecCc--EEEEEeCCCCCcccc------C-CC-------cccCCCcceeEEEE---------cCCCCEEEEEecCCcEEEE
Q psy12802 242 SYDN--IKLFAWSPSKSVWEE------Q-PN-------KTIPNLYTISALSW---------KRDGSRIACGGLCGSVELF 296 (1637)
Q Consensus 242 ~~d~--i~i~~~~~~~~~~~~------~-~~-------~~~~~~~~i~~l~~---------spdg~~l~~~~~dg~v~iw 296 (1637)
.... |+.++++.....+.. . .. ...........+++ .++|...++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 5544 888777643221100 0 00 00011234677888 6777777766677788888
Q ss_pred Ec
Q psy12802 297 ES 298 (1637)
Q Consensus 297 d~ 298 (1637)
+.
T Consensus 371 ~~ 372 (433)
T 4hw6_A 371 TP 372 (433)
T ss_dssp CT
T ss_pred CC
Confidence 74
No 433
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.78 E-value=0.00085 Score=71.55 Aligned_cols=186 Identities=10% Similarity=0.064 Sum_probs=115.6
Q ss_pred CCEEEEEEcCCCC-EEEEeCCCcEEEEEcCCCce-eeecccCCcEEEEEEecCCCeEEEE-eCCCcEEEEEecCCCCccc
Q psy12802 93 CPVTTMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSG-HADGSIVRYYVTEDASNFD 169 (1637)
Q Consensus 93 ~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~ 169 (1637)
.-...+.|+ ++. +++.+.+|.|+++|+++++. ..+.........+++ +++.|... ..++.+.+||..+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl----- 126 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPP----- 126 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTT-----
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcC-----
Confidence 334788887 356 77788889999999999998 444222222233444 45555444 45889999999873
Q ss_pred ccccccccCCCCcEEEEecCCeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-EE
Q psy12802 170 QQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IK 247 (1637)
Q Consensus 170 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-i~ 247 (1637)
+.+.++.. ...-+.+++....++.+..++.|.++| .+.+.+.++........-..++.+.|. +|+..+..-... |.
T Consensus 127 ~~~~ti~~-~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 127 QRERTTRY-SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EEEEEEEC-SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred cEEEEEeC-CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 55555553 333467777777777777799999999 788888888753220112245667776 775444332333 77
Q ss_pred EEEeCCCCCc--cccCCCc------ccCCCcceeEEEEcCCCCEEEEEe
Q psy12802 248 LFAWSPSKSV--WEEQPNK------TIPNLYTISALSWKRDGSRIACGG 288 (1637)
Q Consensus 248 i~~~~~~~~~--~~~~~~~------~~~~~~~i~~l~~spdg~~l~~~~ 288 (1637)
+.|..+++.. ++..... ..........++|+|+++.|.+.+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 7777665432 1111000 111224678999999877665544
No 434
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.76 E-value=0.0017 Score=72.65 Aligned_cols=207 Identities=8% Similarity=-0.037 Sum_probs=138.3
Q ss_pred hhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHH----H
Q psy12802 1072 VGEIKATFIQKCKQLEEEN--KFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQEC----E 1145 (1637)
Q Consensus 1072 ~~~~~~~~~~~a~~~~~~g--~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~----~ 1145 (1637)
.|....+++..+.++...| ++++|++.+.++ +. ..|. ...+|++-+.++ .
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~----------------------L~-~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEI----------------------AL-DNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHH----------------------HH-HCTT-CCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHH----------------------HH-HCcc-cHHHHHHHHHHHHHHHH
Confidence 3667889999999999999 788877764431 11 2332 246787777777 6
Q ss_pred Hc---cCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcc--hHHHHHHHhccHHH
Q psy12802 1146 ES---KNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGD--SAVRLLNRLSLLES 1220 (1637)
Q Consensus 1146 ~~---g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~ 1220 (1637)
.. +++++++.++.++ +-..+.+..++..-+.+....+.++ ++++++.++
T Consensus 119 ~l~~~~~~~~EL~~~~~~---------------------l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~----- 172 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAM---------------------LSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV----- 172 (306)
T ss_dssp HTTTCCCTHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH-----
T ss_pred hccccCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHH-----
Confidence 66 7888888888888 5566677778888887777777766 666655443
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC------hHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Q psy12802 1221 CISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQ------FNEAETQFIKANKPKEAISMYIHNQDWENAER 1294 (1637)
Q Consensus 1221 ~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~------~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~ 1294 (1637)
+ ...+....++.+.+.++...++ ++++++.+.++
T Consensus 173 ----------------i---~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a--------------------- 212 (306)
T 3dra_A 173 ----------------I---DTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK--------------------- 212 (306)
T ss_dssp ----------------H---HHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH---------------------
T ss_pred ----------------H---HhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH---------------------
Confidence 1 1256677788888888887776 66666655555
Q ss_pred HHhhhCCCChHHHHHHhHHHHHhcCChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCChhHHHHHHHHHHh
Q psy12802 1295 IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEIN 1374 (1637)
Q Consensus 1295 ~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~~~l~~~~~~~~~ 1374 (1637)
...+|. +..++..+...+...|+..++...| + .+.+. + .
T Consensus 213 --I~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~------------~-------------~~~~~-----~--------~ 251 (306)
T 3dra_A 213 --IVKCPQ-NPSTWNYLLGIHERFDRSITQLEEF------------S-------------LQFVD-----L--------E 251 (306)
T ss_dssp --HHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHH------------H-------------HTTEE-----G--------G
T ss_pred --HHhCCC-CccHHHHHHHHHHhcCCChHHHHHH------------H-------------HHHHh-----c--------c
Confidence 334566 4566777777776666543322211 1 21110 0 0
Q ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q psy12802 1375 TNISKDIHSLITQARQWEQNGEFYNAVECYLKIKN 1409 (1637)
Q Consensus 1375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~ 1409 (1637)
...+....++..+|.+|.+.|++++|+++|.++.+
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 01345566789999999999999999999998764
No 435
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.74 E-value=0.0011 Score=74.21 Aligned_cols=203 Identities=8% Similarity=-0.080 Sum_probs=136.1
Q ss_pred CChHHHHHHHHHHHHhcc--cHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHH----H
Q psy12802 955 KNVTALEEEWGDHLIENK--QYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHF----K 1028 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~--~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~----~ 1028 (1637)
|+........+.++...+ .+++|+.++.++... +|. ...+|+.-+.++ .
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------------------------nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------------------------NEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------------------------CTT-CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------------------------Ccc-cHHHHHHHHHHHHHHHH
Confidence 445557888999999888 888888877664221 555 677888777766 4
Q ss_pred Hh---CCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHhC
Q psy12802 1029 TV---KDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFK--EAERLYLIIG 1103 (1637)
Q Consensus 1029 ~~---g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--~A~~~y~~~~ 1103 (1637)
.. ++++++++++.++.. ..|....++...+-++...|+++ ++++.+.+
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~-------------------------~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~-- 171 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLS-------------------------SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK-- 171 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHH-------------------------HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH--
T ss_pred hccccCCHHHHHHHHHHHHH-------------------------hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH--
Confidence 44 444444444433321 12555778888888888888876 55544322
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccC------HHHHHHHHHHccCHHHHHHHHHhcCCHH
Q psy12802 1104 EPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKN------YKQAEKYYLDCNEWKLAIKMYRSLNLWE 1177 (1637)
Q Consensus 1104 ~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~y~~a~~~~~~~~~y~~~g~~~ 1177 (1637)
+++ .++ ....+|.+.+..+...|. ++++++++.++
T Consensus 172 --------------------~i~-~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a----------------- 212 (306)
T 3dra_A 172 --------------------VID-TDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK----------------- 212 (306)
T ss_dssp --------------------HHH-HCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH-----------------
T ss_pred --------------------HHH-hCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH-----------------
Confidence 122 233 224678888888888877 88888888888
Q ss_pred HHHHHHHhcCCccchHHHHHHHHHhcCcchHHH-HHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHH
Q psy12802 1178 DAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVR-LLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALV 1256 (1637)
Q Consensus 1178 ~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~ 1256 (1637)
+...+.+..++...+..+.+.|...+++. +..+.-..+ ...+..+.+...+|.+
T Consensus 213 ----I~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 213 ----IVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE---------------------KDQVTSSFALETLAKI 267 (306)
T ss_dssp ----HHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---------------------GTEESCHHHHHHHHHH
T ss_pred ----HHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---------------------CCCCCCHHHHHHHHHH
Confidence 77778888899999888888887655443 433321111 0124566777789999
Q ss_pred HHhCCChHHHHHHHHHc
Q psy12802 1257 LEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1257 ~~~~g~~~~A~~~~~~a 1273 (1637)
|.+.|+.++|++.|.++
T Consensus 268 ~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHH
Confidence 99999999998888876
No 436
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00015 Score=73.76 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1037 (1637)
...+...|..+...|+|++|+.+|.++....... .......... .. ...|. ...++..+|.+|...|++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~---~~~~~~~~~~--~~-~~~~~-~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTL---ILREKPGEPE--WV-ELDRK-NIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---HHTSCTTSHH--HH-HHHHT-HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---cccCCCCHHH--HH-HHHHH-HHHHHHHHHHHHHhcCcHHHHH
Confidence 3455689999999999999999987753321100 0000000000 00 00232 5678999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1038 KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1038 ~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
..|.++... .|....+|+.+|.+|..+|++++|+..|.++
T Consensus 84 ~~~~~al~~-------------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 84 ETSSEVLKR-------------------------EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHH-------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc-------------------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 888776433 2555788999999999999999999987774
No 437
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.74 E-value=6.4e-05 Score=91.36 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccC--HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQ--WKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 958 ~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~--~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
...+...|..+...|+|++|+.+|.++... .-.... -+... . ..+. ...+|.++|.+|.+.|+|++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~----~-~~~~-~~~~~~nla~~~~~~g~~~~ 335 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW------LEMEYGLSEKESK----A-SESF-LLAAFLNLAMCYLKLREYTK 335 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HTTCCSCCHHHHH----H-HHHH-HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------hcccccCChHHHH----H-HHHH-HHHHHHHHHHHHHHhcCHHH
Confidence 345568999999999999999999876332 111000 00000 0 0111 35689999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhc
Q psy12802 1036 AEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQ 1115 (1637)
Q Consensus 1036 A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~ 1115 (1637)
|+..|.++...+ |....+++++|.+|..+|+|++|+..|.++...
T Consensus 336 A~~~~~~al~~~-------------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---------- 380 (457)
T 1kt0_A 336 AVECCDKALGLD-------------------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---------- 380 (457)
T ss_dssp HHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHhcC-------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence 999888764322 445778999999999999999999987774322
Q ss_pred CCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHH-HHHc
Q psy12802 1116 RQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKY-YLDC 1160 (1637)
Q Consensus 1116 ~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-y~~a 1160 (1637)
.| ....++..++.++...|++++|++. |.++
T Consensus 381 -------------~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 381 -------------NP-QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -------------C-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------------CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2246788899999999999988754 4443
No 438
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.72 E-value=4.1e-05 Score=79.38 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHH-HHHhCCH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQH-FKTVKDY 1033 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~-~~~~g~~ 1033 (1637)
|.....+..+|.++...|++++|+.+|.++... .|+ .+.++..+|.+ +...|++
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL------------------------RGE-NAELYAALATVLYYQASQH 95 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HCS-CHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------CCC-CHHHHHHHHHHHHHhcCCc
Confidence 344556778888888888888888888765322 343 56678888888 7788887
Q ss_pred --HHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1034 --KTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1034 --~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
++|+.+|.++... .|....++..+|.+|...|++++|+..|.++
T Consensus 96 ~~~~A~~~~~~al~~-------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 96 MTAQTRAMIDKALAL-------------------------DSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp CCHHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh-------------------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8887777664322 1444678889999999999999999998773
No 439
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=7.4e-05 Score=71.36 Aligned_cols=93 Identities=15% Similarity=0.011 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHh
Q psy12802 1136 TLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRL 1215 (1637)
Q Consensus 1136 ~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 1215 (1637)
.+..+|..+...|++++|+..|.++ +...+.+..++..+|.++...|++++|+..|.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~a---------------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAV---------------------CQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677899999999999999999998 6667778888899999999999999888888655
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1216 SLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1216 ~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
....|..++++..+|..|...|++++|+..|.++
T Consensus 78 ------------------------l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 78 ------------------------RMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp ------------------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1225667889999999999999999999999887
No 440
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.0051 Score=73.54 Aligned_cols=153 Identities=8% Similarity=-0.030 Sum_probs=96.7
Q ss_pred CEEEEEEcC-CCC-EEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeC-CC----cEEEEEecCCCC
Q psy12802 94 PVTTMVWLA-DGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHA-DG----SIVRYYVTEDAS 166 (1637)
Q Consensus 94 ~v~~v~~s~-~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~-dg----~i~iwd~~~~~~ 166 (1637)
....++|+| ++. |+++...+.|+.+|+.++....+.........++|+++|+.|+++.. ++ .+.+++... ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence 457899998 344 66555558899999998887666556677899999999996666654 22 233333221 10
Q ss_pred cccccccccccCCCCcEEEEecC--CeEEE-EecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEec
Q psy12802 167 NFDQQQGRVVQHPVPPYALSWPA--GYILA-AGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY 243 (1637)
Q Consensus 167 g~~~~~~~~~~~~~~v~~~~~~~--~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 243 (1637)
.....+. ....+..++++| +.+++ -..++.|..++.++.....+... ........++|+|+|++|.++..
T Consensus 217 ---~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~---~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 217 ---KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI---QDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp ---CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC---SSSSCCEEEEECTTSSEEEEEET
T ss_pred ---eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc---CCCCcceeEEEcCCCCEEEEEEC
Confidence 1111222 234567788887 34444 44578999999665554332211 12235678999999996666654
Q ss_pred Cc--EEEEEeCCC
Q psy12802 244 DN--IKLFAWSPS 254 (1637)
Q Consensus 244 d~--i~i~~~~~~ 254 (1637)
.. |..++.+..
T Consensus 290 ~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 290 NQHYILRSDYDWK 302 (430)
T ss_dssp TTTEEEEEEEETT
T ss_pred CCCEEEEEeCCcc
Confidence 44 888877643
No 441
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.71 E-value=0.23 Score=62.01 Aligned_cols=193 Identities=14% Similarity=0.077 Sum_probs=127.9
Q ss_pred ceeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCc-------ccceEEEEECCCCCeEEEE-ECCCeEEEEEcCCCCCCce
Q psy12802 13 VLQDDVFNLDIVRLRS-EGNVAGIWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVA-QSDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~-~~~d~~i~vwd~~~~~h-------~~~V~~~~~spd~~~la~~-~~d~~i~iw~~~~~~~~~~ 83 (1637)
....++|++++..|.. ...++.|+.++...... .....++++.+.+..|..+ ...+.|.+.++... ..+
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~--~~~ 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ--HRQ 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST--TCE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC--cEE
Confidence 4668999997666554 45567899998865431 1356789999877766654 45678888888653 222
Q ss_pred eEeeccCCCCCEEEEEEcCCCC-EEEEe--CCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEeC-CCcEEEE
Q psy12802 84 VICNKFIQQCPVTTMVWLADGP-IIYGQ--SDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHA-DGSIVRY 159 (1637)
Q Consensus 84 ~~~~~~~~~~~v~~v~~s~~~~-l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~-dg~i~iw 159 (1637)
.+.. ..-.....+++.|... ++.+. ..+.|...++.+.....+...-.....|++++++..|..+.. .+.|...
T Consensus 116 ~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 116 VLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp EEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 3321 2334578999998554 54443 257888888887766555555667899999998777766654 6788888
Q ss_pred EecCCCCcccccccccccCCCCcEEEEecCCeEEEEe-cCCeEEEEe-CCCceeEEee
Q psy12802 160 YVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAG-SDRIVTIYE-SDGRVHRIFD 215 (1637)
Q Consensus 160 d~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~iwd-~~~~~~~~~~ 215 (1637)
|+... ....+......+..+++..+.++.+. ..+.|...| .+|+....+.
T Consensus 194 d~dG~------~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 194 NMLGL------NREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp ETTSC------SCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCC------ceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 88642 22334444556678887766555444 467888888 5666555544
No 442
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.71 E-value=6.9e-05 Score=77.67 Aligned_cols=97 Identities=9% Similarity=0.062 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHH-HHHhcCc--chH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYL-WAKSLGG--DSA 1208 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~A 1208 (1637)
....++..+|..|...|++++|+.+|.++ +...+.+..++..+|.. +...|++ ++|
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------------l~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQA---------------------LQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34678999999999999999999999998 44445566677778888 7777887 888
Q ss_pred HHHHHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1209 VRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1209 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
++.|.++ + ...|..+.++..+|..|...|++++|+..|.++
T Consensus 101 ~~~~~~a-------------------l-----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 101 RAMIDKA-------------------L-----ALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHH-------------------H-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------H-----HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8877554 1 124566889999999999999999999999987
No 443
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.70 E-value=0.011 Score=68.58 Aligned_cols=230 Identities=11% Similarity=-0.023 Sum_probs=137.3
Q ss_pred ceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-E-EEEeCCCcEEEEEcCCCce
Q psy12802 48 VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-I-IYGQSDGKIKAAHVKANKT 125 (1637)
Q Consensus 48 ~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l-~~~~~d~~v~vwd~~~~~~ 125 (1637)
..+|.+..|+ .+|+.+. .+.|+..++... ....+ ......+..++|++.+. + ++-...+.|..+++.++..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~--~~~~~---~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRS--EYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSC--CEEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCC--eeEEe---ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 4456666663 3454443 445777776542 11111 12334588999998666 4 4555678899999988766
Q ss_pred eee-cccCCcEEEEEEecCCCeE-EEEeCCCcEEEEEecCCCCccccccccc-ccCCCCcEEEEecC--CeEEEE-ecC-
Q psy12802 126 QTL-YASNSFVVALCLNVRGAGV-LSGHADGSIVRYYVTEDASNFDQQQGRV-VQHPVPPYALSWPA--GYILAA-GSD- 198 (1637)
Q Consensus 126 ~~~-~~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~--~~l~~~-~~d- 198 (1637)
..+ .........+++.+.+..| ++-...+.|.+.++... ....+ ...-..+..++++| +.++.+ ...
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC------ceEEEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence 333 2233456789999865555 45455788999887642 22222 23345688999987 344443 334
Q ss_pred CeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEE
Q psy12802 199 RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALS 276 (1637)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 276 (1637)
+.|..++.+|.....+-. ..-.....++++|++..|..+.... |..++++..... ............++
T Consensus 182 ~~I~r~~~dG~~~~~~~~----~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-----~~~~~~~~~P~gia 252 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIAD----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-----AVISQGLPHPFAIT 252 (349)
T ss_dssp CEEEEEETTSCSCEESCC----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSSEEEEE
T ss_pred CEEEEEeCCCCCcEEEEE----CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-----EEEeCCCCCceEEE
Confidence 788888877766555432 1233578999999888777766544 888887643221 00111233556677
Q ss_pred EcCCCCEEEEEecCCcEEEEEccc
Q psy12802 277 WKRDGSRIACGGLCGSVELFESVL 300 (1637)
Q Consensus 277 ~spdg~~l~~~~~dg~v~iwd~~~ 300 (1637)
+ ..+...++-...+.|..++..+
T Consensus 253 v-~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 253 V-FEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp E-ETTEEEEEETTTTEEEEEETTT
T ss_pred E-ECCEEEEecCCCCeEEEEEccC
Confidence 6 3444445555566777766433
No 444
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=3.1e-05 Score=89.85 Aligned_cols=113 Identities=19% Similarity=0.039 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHH
Q psy12802 1075 IKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAE 1154 (1637)
Q Consensus 1075 ~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 1154 (1637)
....+..+|..+...|+|++|+..|.++-........+...++++++...+. ..+|+.+|.+|...|+|++|+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK-------NPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH-------THHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH-------HHHHHHHHHHHHHcCCHHHHH
Confidence 3556778888999999999999988875433222223444445555544332 357899999999999999999
Q ss_pred HHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHh
Q psy12802 1155 KYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRL 1215 (1637)
Q Consensus 1155 ~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 1215 (1637)
.+|.++ +.....+..+++.+|.++...|++++|+..|.++
T Consensus 251 ~~~~~a---------------------l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 251 GHCNIV---------------------LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHH---------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHH---------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888 4444556667788888888888888888877765
No 445
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.69 E-value=0.0044 Score=77.07 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=148.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCc------ccc----------eEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeec
Q psy12802 25 RLRSEGNVAGIWAWRGQNGRK------SYV----------VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK 88 (1637)
Q Consensus 25 ~la~~~~d~~i~vwd~~~~~h------~~~----------V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~ 88 (1637)
.+.+++.++.|+-+|..+|+. ... -..++. .+..|++++.|+.|.-+|..++....+.....
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 444445434588888877761 100 012222 35678888899999999998862111111100
Q ss_pred -----cCCCCCEEEEEEcCCCC--EEEEe------CCCcEEEEEcCCCcee-eecccCC---------------------
Q psy12802 89 -----FIQQCPVTTMVWLADGP--IIYGQ------SDGKIKAAHVKANKTQ-TLYASNS--------------------- 133 (1637)
Q Consensus 89 -----~~~~~~v~~v~~s~~~~--l~~~~------~d~~v~vwd~~~~~~~-~~~~~~~--------------------- 133 (1637)
.....++.. .=..+|+ +++++ .++.|..+|..+|+.. .......
T Consensus 148 ~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 148 HGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp GGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 001122211 0001233 44443 2789999999999862 2111000
Q ss_pred --------------------cEEEEEEecCCCeEEEEeC--------------------C----CcEEEEEecCCCCccc
Q psy12802 134 --------------------FVVALCLNVRGAGVLSGHA--------------------D----GSIVRYYVTEDASNFD 169 (1637)
Q Consensus 134 --------------------~v~~l~~s~~g~~l~s~~~--------------------d----g~i~iwd~~~~~~g~~ 169 (1637)
.-..++++|+...+++++. | ++|.-+|..+.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG----- 301 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG----- 301 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC-----
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC-----
Confidence 0123567777777777663 2 57888888774
Q ss_pred ccccccc--cCC-------CCcEEEEe---cC---CeEEEEecCCeEEEEe-CCCceeEEeeccCCCC--------CCc-
Q psy12802 170 QQQGRVV--QHP-------VPPYALSW---PA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHY--------KER- 224 (1637)
Q Consensus 170 ~~~~~~~--~~~-------~~v~~~~~---~~---~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~--------~~~- 224 (1637)
+.+-.+. .|. ..+.-+.. .. ..++.++.+|.+.++| .+|+.+..+....... ...
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCE
T ss_pred CEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCE
Confidence 3333332 221 11222232 12 2577788999999999 8999887766432000 000
Q ss_pred -------------------c------------EEEEEECCCCCEEEEEec------------------------------
Q psy12802 225 -------------------E------------FTVACSSPSGQAVVVGSY------------------------------ 243 (1637)
Q Consensus 225 -------------------~------------i~~~~~sp~g~~l~~~~~------------------------------ 243 (1637)
. -..++++|+...+.+...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 0 013466776655554432
Q ss_pred ---Cc-EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeC
Q psy12802 244 ---DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG 307 (1637)
Q Consensus 244 ---d~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~ 307 (1637)
++ |..||..+++..|...... ++..-.....+..+++|+.||.++.||..+++.+++.
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCcceEEEEECCCCCEEEEecCCC------CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 34 7778888888777553221 1111111124677888999999999999999887763
No 446
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.69 E-value=0.0003 Score=68.88 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHH
Q psy12802 1132 LLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRL 1211 (1637)
Q Consensus 1132 ~~~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 1211 (1637)
..+..+..+|..+...|+|++|+.+|.++ +...+.+..++..+|..+...|++++|+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a---------------------l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRA---------------------ITRNPLVAVYYTNRALCYLKMQQPEQALAD 65 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHH---------------------HhhCcCcHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34678999999999999999999999998 444555666788888888888888888888
Q ss_pred HHHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1212 LNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1212 ~~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
|.++ + ...+..+.+++.+|..+...|++++|+..|.++
T Consensus 66 ~~~a-------------------l-----~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 66 CRRA-------------------L-----ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHH-------------------H-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-------------------H-----HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7654 1 124567889999999999999999999999988
No 447
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00043 Score=65.36 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
...+..+|..+...|++++|+.+|.++ +...+.+..++..+|..+...|++++|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~---------------------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEA---------------------IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH---------------------HHHCCCcHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467888999999999999999999988 33344455667788888888888888887775
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
++- + ..+..+.++..+|..+...|++++|+..|.++
T Consensus 63 ~~~-------------------~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 63 KTV-------------------D-----LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHH-------------------H-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-------------------H-----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 541 1 13556788999999999999999999999887
No 448
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00013 Score=85.46 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHHHhcccHHHHHHHHH
Q psy12802 903 VSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYI 982 (1637)
Q Consensus 903 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~a~~~y~~~~~~~~A~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~A~~~~~ 982 (1637)
+..++..+.+.|+|++|...|++..+...-.. .....+++.. ..+....++..+|.++...|+|++|+.+|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR---AAAEDADGAK-----LQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHSCHHHHGG-----GHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc---cccChHHHHH-----HHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 44556666677777777666653322111000 0000111110 123345577789999999999999998887
Q ss_pred HhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHH
Q psy12802 983 EAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKA 1062 (1637)
Q Consensus 983 ~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A 1062 (1637)
++... +|+ .+.++..+|.+|...|++++|+..|.++....
T Consensus 298 ~al~~------------------------~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------------- 337 (370)
T 1ihg_A 298 EALEI------------------------DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------------- 337 (370)
T ss_dssp HHHTT------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHh------------------------Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Confidence 76543 455 67889999999999999999998888764322
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy12802 1063 YAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERL 1098 (1637)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 1098 (1637)
|....++..++.++..++++++|.+.
T Consensus 338 ----------P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 ----------PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677778888888887777653
No 449
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00015 Score=84.83 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHH
Q psy12802 1076 KATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEK 1155 (1637)
Q Consensus 1076 ~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1155 (1637)
...+..+|..+..+|+|++|+..|.++-....... .....+++.. ..+....+|..+|.+|...|+|++|+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR---AAAEDADGAK-----LQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHSCHHHHGG-----GHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc---cccChHHHHH-----HHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 45677889999999999999999877533211100 0111111111 113345789999999999999999999
Q ss_pred HHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCChHHHH
Q psy12802 1156 YYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAF 1235 (1637)
Q Consensus 1156 ~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~~~~a~ 1235 (1637)
+|.++ +.....+..++..+|.++...|++++|++.|.++ +
T Consensus 295 ~~~~a---------------------l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A-------------------l 334 (370)
T 1ihg_A 295 SCLEA---------------------LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA-------------------Q 334 (370)
T ss_dssp HHHHH---------------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H
T ss_pred HHHHH---------------------HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHH-------------------H
Confidence 99998 3333445567788888888888888888887654 1
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHH
Q psy12802 1236 ELAKIGMKSKLEEVHYKYALVLEDNGQFNEAET 1268 (1637)
Q Consensus 1236 ~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 1268 (1637)
...+..+.++..++..+...+++++|.+
T Consensus 335 -----~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 335 -----EIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -----HHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134567777788888888777777764
No 450
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.66 E-value=0.27 Score=61.43 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=138.0
Q ss_pred eEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCceeeecc-cCCcEE
Q psy12802 60 KLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKTQTLYA-SNSFVV 136 (1637)
Q Consensus 60 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~v~ 136 (1637)
+|+.+ ..+.|+..++.+.. .... .....-..+..++|++.+. +++-..++.|..+++.+.....+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~--~~~~-~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNN--NNVA-IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTT--CEEE-CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCC--cceE-EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45544 46788889987631 1111 1122335688999999766 4555667899999998766543332 234577
Q ss_pred EEEEecCCCeEEEE-eCCCcEEEEEecCCCCcccccccccc-cCCCCcEEEEecC--CeEEEEe--cCCeEEEEeCCCce
Q psy12802 137 ALCLNVRGAGVLSG-HADGSIVRYYVTEDASNFDQQQGRVV-QHPVPPYALSWPA--GYILAAG--SDRIVTIYESDGRV 210 (1637)
Q Consensus 137 ~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~~~~~~~~-~~~~~v~~~~~~~--~~l~~~~--~d~~i~iwd~~~~~ 210 (1637)
.+++.+.+..|..+ ...+.|.+.++.. .....+. ..-..+..++++| +.+..+. ..+.|...+.+|..
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG------~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDG------QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS------TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCC------CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 89999876655544 4567888888764 2222222 3446689999987 4555544 25678888877776
Q ss_pred eEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEe
Q psy12802 211 HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 288 (1637)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 288 (1637)
...+-. .-.....+++++++..|..+.... |..++++..... ...........+++.. +..+++-.
T Consensus 158 ~~~l~~-----~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~------v~~~~l~~P~glav~~-~~ly~tD~ 225 (628)
T 4a0p_A 158 RTTLVP-----NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE------VIADDLPHPFGLTQYQ-DYIYWTDW 225 (628)
T ss_dssp CEEEEC-----SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEEECCSCEEEEEEET-TEEEEEET
T ss_pred eEEEEC-----CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE------EeeccCCCceEEEEEC-CEEEEecC
Confidence 655542 234688999999888877776555 878777653321 1111223455677654 34444444
Q ss_pred cCCcEEEEEccccc
Q psy12802 289 LCGSVELFESVLKR 302 (1637)
Q Consensus 289 ~dg~v~iwd~~~~~ 302 (1637)
..+.|...|..+++
T Consensus 226 ~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 226 SRRSIERANKTSGQ 239 (628)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCEEEEEECCCCC
Confidence 57888888865553
No 451
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.66 E-value=0.44 Score=63.86 Aligned_cols=201 Identities=12% Similarity=0.008 Sum_probs=107.8
Q ss_pred EEEEEeCCCeEEEEEcCCCC--------cccceEEEEECCC------CCeEEEEEC-CCeEEEEEcCCCCCCceeEeecc
Q psy12802 25 RLRSEGNVAGIWAWRGQNGR--------KSYVVKGLAFSPD------STKLAVAQS-DNIIFIYKLGDDWGDKKVICNKF 89 (1637)
Q Consensus 25 ~la~~~~d~~i~vwd~~~~~--------h~~~V~~~~~spd------~~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~ 89 (1637)
.++.++ .+.+.++.+..+. -...|.|+++.|. ++++++|.. |++|+|+++.+- ..+.....
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l---~~~~~~~L 600 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF---ELLHKEML 600 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC---CEEEEEEC
T ss_pred EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC---CeEEEEEC
Confidence 444444 4567777665432 2568999999864 468999996 999999999752 12211122
Q ss_pred CCCCCEEEEEEcC-CCC--EEEEeCCCcEEEEEc--CCCce---eeecccCCcEEEEEEecCCCeEEEEeCCCcEEEEEe
Q psy12802 90 IQQCPVTTMVWLA-DGP--IIYGQSDGKIKAAHV--KANKT---QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161 (1637)
Q Consensus 90 ~~~~~v~~v~~s~-~~~--l~~~~~d~~v~vwd~--~~~~~---~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~ 161 (1637)
+......++.+.. ++. +..|..||.+..+.+ .+|.. ++..-...++.-..+...|..-+.+..+....++.-
T Consensus 601 ~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~ 680 (1158)
T 3ei3_A 601 GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS 680 (1158)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES
T ss_pred CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc
Confidence 2223444444432 233 778999998866554 45554 112222345554455555544344444444444432
Q ss_pred cCCCCcccccccccccCCCCcEEEEec----CCeEEEEecCCeEEEEe---CCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 162 TEDASNFDQQQGRVVQHPVPPYALSWP----AGYILAAGSDRIVTIYE---SDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 162 ~~~~~g~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~iwd---~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
.. ....+-.....--....|+ |+.++..+ ++.++|.. ...-.+++++ -...+..++++|+
T Consensus 681 ~~------~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip------L~~Tprri~y~~~ 747 (1158)
T 3ei3_A 681 NH------KLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP------LYESPRKICYQEV 747 (1158)
T ss_dssp SS------SEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE------CSSEEEEEEEEGG
T ss_pred CC------ceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe------CCCCceEEEEcCC
Confidence 21 1111111111122334453 34555444 45588876 2222334444 3346888899988
Q ss_pred CCEEEEEe
Q psy12802 235 GQAVVVGS 242 (1637)
Q Consensus 235 g~~l~~~~ 242 (1637)
.+.++++.
T Consensus 748 ~~~~~v~~ 755 (1158)
T 3ei3_A 748 SQCFGVLS 755 (1158)
T ss_dssp GTEEEEEE
T ss_pred CCEEEEEE
Confidence 88766654
No 452
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.66 E-value=0.00022 Score=86.68 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCC--HHHHHHHHHhhCCCchHHHHHHHHHHHHHccCH
Q psy12802 1073 GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQ--YENMIKLVRNYHPDLLDTTLLHLAQECEESKNY 1150 (1637)
Q Consensus 1073 ~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 1150 (1637)
+.....+..+|..|.++|+|++|+..|.++ +.+.-.... -+...+ + .+....+|.++|.+|.+.|+|
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~A------l~~~p~~~~~~~~~~~~-~----~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKI------VSWLEMEYGLSEKESKA-S----ESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHTTCCSCCHHHHHH-H----HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHH------HHHhcccccCChHHHHH-H----HHHHHHHHHHHHHHHHHhcCH
Confidence 455778889999999999999999998774 222111110 011000 0 112357889999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHHhccHHHHHHHHHhcCC
Q psy12802 1151 KQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQ 1230 (1637)
Q Consensus 1151 ~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~i~~~~~~~~ 1230 (1637)
++|+.+|.++ +.....+..+++.+|.++...|++++|+..|.++
T Consensus 334 ~~A~~~~~~a---------------------l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a--------------- 377 (457)
T 1kt0_A 334 TKAVECCDKA---------------------LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV--------------- 377 (457)
T ss_dssp HHHHHHHHHH---------------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH---------------------HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHH---------------
Confidence 9999999998 4455566778888999999999988888888765
Q ss_pred hHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHH
Q psy12802 1231 FDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQ 1269 (1637)
Q Consensus 1231 ~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 1269 (1637)
....|....++..++..+...+++++|...
T Consensus 378 ---------l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 378 ---------LEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ---------HTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455667888899999998888888753
No 453
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.66 E-value=0.27 Score=61.32 Aligned_cols=220 Identities=10% Similarity=-0.070 Sum_probs=127.7
Q ss_pred ECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-EE-EEeCCCcEEEEEcCCCce--eeecccCCcEEEEEE
Q psy12802 65 QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-II-YGQSDGKIKAAHVKANKT--QTLYASNSFVVALCL 140 (1637)
Q Consensus 65 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l~-~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~ 140 (1637)
...+.|+..++.... .........-..+..++|++.+. ++ +-...+.|..+++.+... ..+.........+++
T Consensus 15 ~~~~~I~~i~~~~~~---~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 15 ANRRDLRLVDATNGK---ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp ECSSBEEEECCC------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred eccccEEEEeCCCCc---ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 345678888876531 01111223345678999998666 44 444568899999887642 233333367899999
Q ss_pred ecCCCeEEEE-eCCCcEEEEEecCCCCcccccccccc-cCCCCcEEEEecC--CeEEEEec--CCeEEEEeCCCceeEEe
Q psy12802 141 NVRGAGVLSG-HADGSIVRYYVTEDASNFDQQQGRVV-QHPVPPYALSWPA--GYILAAGS--DRIVTIYESDGRVHRIF 214 (1637)
Q Consensus 141 s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~~~~~~~~-~~~~~v~~~~~~~--~~l~~~~~--d~~i~iwd~~~~~~~~~ 214 (1637)
++.+..|+.+ ...+.|.+.++.. .....+. ..-..+..|+++| +.+..+.. .+.|...+.+|.....+
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG------~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l 165 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDG------SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 165 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EecCCEEEEEeCCCCEEEEEECCC------CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE
Confidence 9966655554 4578899998874 3333332 4455688899977 45555443 46777777777665555
Q ss_pred eccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCc
Q psy12802 215 DYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 292 (1637)
Q Consensus 215 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 292 (1637)
-.. .-.....++++|++..|..+.... |..++++..... . .. ........++++.++ ...++-...+.
T Consensus 166 ~~~----~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~---~~-~~~~~~P~gi~~~~~-~ly~td~~~~~ 235 (619)
T 3s94_A 166 INS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-A---VV-KGSLPHPFALTLFED-ILYWTDWSTHS 235 (619)
T ss_dssp ECS----SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCS
T ss_pred EeC----CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-E---EE-eCCCCCceEEEEeCC-EEEEecCCCCE
Confidence 421 234678999999887777775544 777766543221 0 00 011223456677655 44444456778
Q ss_pred EEEEEccccce
Q psy12802 293 VELFESVLKRT 303 (1637)
Q Consensus 293 v~iwd~~~~~~ 303 (1637)
|...|..+++.
T Consensus 236 V~~~d~~tg~~ 246 (619)
T 3s94_A 236 ILACNKYTGEG 246 (619)
T ss_dssp EEEEESSSCCC
T ss_pred EEEEECCCCcc
Confidence 88888876643
No 454
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.65 E-value=0.00018 Score=76.03 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHH-HHHHHhcCCccchHHHHHHHHHhcCcchHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDA-YRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLL 1212 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 1212 (1637)
...+..+|..+...|+|++|+.+|.++-.. .-...++... ..-........++..+|..+...|++++|+..|
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF------FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456788999999999999999999988210 0000000000 000000000135566777777777777777776
Q ss_pred HHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHH
Q psy12802 1213 NRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENA 1292 (1637)
Q Consensus 1213 ~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a 1292 (1637)
.++ ++ ..+..+.+++.+|..|...|++++|+..|.++
T Consensus 112 ~~a-------------------l~-----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------- 148 (198)
T 2fbn_A 112 SKV-------------------LK-----IDKNNVKALYKLGVANMYFGFLEEAKENLYKA------------------- 148 (198)
T ss_dssp HHH-------------------HH-----HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------
T ss_pred HHH-------------------HH-----hCcccHHHHHHHHHHHHHcccHHHHHHHHHHH-------------------
Confidence 544 11 14567889999999999999999999999987
Q ss_pred HHHHhhhCCCChHHHHHHhHHHHHhcCChhhHH
Q psy12802 1293 ERIANEHDPTSIGDILLNQSKCEFENENFSKFE 1325 (1637)
Q Consensus 1293 ~~~a~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 1325 (1637)
..+.|. .+.++..++..+...++..++.
T Consensus 149 ----l~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ----ASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ----HHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred ----HHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333455 4667777777777777666665
No 455
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.65 E-value=0.00019 Score=69.49 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
..+..+|..+...|++++|+.+|.++... .|. .+.++..+|.+|...|++++|+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~-~~~~~~~la~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL------------------------DPT-NMTYITNQAAVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------------CCc-cHHHHHHHHHHHHHhccHHHHHH
Confidence 44567888888888888888887765322 344 56789999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhh-cChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQH-LNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+|.++..... .. ...+....++..+|..+...|++++|++.|.++
T Consensus 60 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 60 LCEKAIEVGR-------------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcc-------------------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9887644321 11 111223678899999999999999999987763
No 456
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.63 E-value=0.0012 Score=82.26 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=115.4
Q ss_pred CCCEEEEeC-CCcEEEEEc-CCCcee-eecccCC----------c-EEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcc
Q psy12802 103 DGPIIYGQS-DGKIKAAHV-KANKTQ-TLYASNS----------F-VVALCLNVRGAGVLSGHADGSIVRYYVTEDASNF 168 (1637)
Q Consensus 103 ~~~l~~~~~-d~~v~vwd~-~~~~~~-~~~~~~~----------~-v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~ 168 (1637)
++.+++++. ++.|.-+|. .+|+.. ....... . ...++. ++..+++++.|+.|..+|..+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG---- 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTG---- 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC----
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCC----
Confidence 455666676 888999999 888872 2211100 0 011222 3567888888999999998874
Q ss_pred cccccccccCC----CCcE-EEEecCCeEEEEec------CCeEEEEe-CCCceeEEeeccCCC------C---------
Q psy12802 169 DQQQGRVVQHP----VPPY-ALSWPAGYILAAGS------DRIVTIYE-SDGRVHRIFDYTAPH------Y--------- 221 (1637)
Q Consensus 169 ~~~~~~~~~~~----~~v~-~~~~~~~~l~~~~~------d~~i~iwd-~~~~~~~~~~~~~~~------~--------- 221 (1637)
+.+.+..... ..+. +.....+.+++++. ++.|..+| .+|+.+.++...... +
T Consensus 136 -~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 136 -KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp -CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred -CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 3332221110 0111 11123467777665 79999999 889998877643210 0
Q ss_pred ------------------CCccEEEEEECCCCCEEEEEecC-----------------cEEEEEeCCCCCccccCCCccc
Q psy12802 222 ------------------KEREFTVACSSPSGQAVVVGSYD-----------------NIKLFAWSPSKSVWEEQPNKTI 266 (1637)
Q Consensus 222 ------------------~~~~i~~~~~sp~g~~l~~~~~d-----------------~i~i~~~~~~~~~~~~~~~~~~ 266 (1637)
.......+++.|+...+..++.+ .|..+|..+++..|........
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 00000235666776677666532 2777888888877865432211
Q ss_pred ----CCCcceeEEEEcCCCC---EEEEEecCCcEEEEEccccceeeeC
Q psy12802 267 ----PNLYTISALSWKRDGS---RIACGGLCGSVELFESVLKRTIWKG 307 (1637)
Q Consensus 267 ----~~~~~i~~l~~spdg~---~l~~~~~dg~v~iwd~~~~~~~~~~ 307 (1637)
.......-+...++|+ .++.++.+|.+.++|..+++.++..
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 0111222233335774 5778899999999999999887653
No 457
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.62 E-value=0.00031 Score=67.21 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHH
Q psy12802 956 NVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKT 1035 (1637)
Q Consensus 956 ~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1035 (1637)
.....+..+|..+...|++++|+.+|.++... .|. ...++..+|..+...|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~-~~~~~~~la~~~~~~~~~~~ 61 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------------DPN-NAEAWYNLGNAYYKQGDYDE 61 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------CcC-cHHHHHHHHHHHHHhCCHHH
Confidence 33445567777788888888887777664221 233 45677778888888888888
Q ss_pred HHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12802 1036 AEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLI 1101 (1637)
Q Consensus 1036 A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 1101 (1637)
|+.+|.++.... +....++..+|..+...|++++|+..|.+
T Consensus 62 A~~~~~~~~~~~-------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 62 AIEYYQKALELD-------------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887777653210 12234455555566666666666655554
No 458
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.61 E-value=0.01 Score=63.99 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=119.6
Q ss_pred CCceeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCc--------ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCC
Q psy12802 11 SNVLQDDVFNLDIVRLR-SEGNVAGIWAWRGQNGRK--------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGD 81 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la-~~~~d~~i~vwd~~~~~h--------~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~ 81 (1637)
...+..++|+|++..|. +...++.|...|.. ++- ....-+|++.+++.++++.-.++.+.++++......
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35799999999876555 56778889999987 441 135668899999987676667788999988764211
Q ss_pred c--eeEee---ccCCCCCEEEEEEcCCCC-EEEEeCCCcEEEEEcCC---C-ceeee-------cccCCcEEEEEEecCC
Q psy12802 82 K--KVICN---KFIQQCPVTTMVWLADGP-IIYGQSDGKIKAAHVKA---N-KTQTL-------YASNSFVVALCLNVRG 144 (1637)
Q Consensus 82 ~--~~~~~---~~~~~~~v~~v~~s~~~~-l~~~~~d~~v~vwd~~~---~-~~~~~-------~~~~~~v~~l~~s~~g 144 (1637)
. ..... ..........++|+|.+. ++++.......+|.++. + ....+ ..+-..+.+++++|..
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 1 11111 112356679999999997 66666555555555542 1 11111 1123457899999965
Q ss_pred C-eEEEEeCCCcEEEEEecCCCCcccccccc--cc-c------CCCCcEEEEecC-CeEEEEecCCeEEEEe
Q psy12802 145 A-GVLSGHADGSIVRYYVTEDASNFDQQQGR--VV-Q------HPVPPYALSWPA-GYILAAGSDRIVTIYE 205 (1637)
Q Consensus 145 ~-~l~s~~~dg~i~iwd~~~~~~g~~~~~~~--~~-~------~~~~v~~~~~~~-~~l~~~~~d~~i~iwd 205 (1637)
. +++.++..+.+..+|... +.+.. +. + .-..+..|+|.+ +.+...+..+.+..+.
T Consensus 185 g~lliLS~~s~~L~~~d~~g------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVG------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp TEEEEEETTTTEEEEECTTC------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred CeEEEEECCCCeEEEEcCCC------CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 4 455555677888888664 32222 22 1 123678899987 4666667777777665
No 459
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.61 E-value=0.42 Score=62.13 Aligned_cols=327 Identities=13% Similarity=0.092 Sum_probs=179.9
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------ccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCce
Q psy12802 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKK 83 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~h-------~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~ 83 (1637)
...|.++...++|.+.+ |+.+ .+..+|..+... ...|.++.. .+| .|-+++.+ -+..++..++ ...
T Consensus 62 ~~~i~~i~~d~~g~lWi-gT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~--~~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYM-GTDN-GILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSR--KLT 134 (758)
T ss_dssp SSCEEEEEEETTTEEEE-EETT-EEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTC--CEE
T ss_pred CceEEEEEEcCCCcEEE-EeCC-CeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCC--eEE
Confidence 45788888888875444 4444 588899775431 234777654 344 45566665 5778887653 111
Q ss_pred eEee--ccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeec--cc----CCcEEEEEEecCCCeEEEEeCCCc
Q psy12802 84 VICN--KFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLY--AS----NSFVVALCLNVRGAGVLSGHADGS 155 (1637)
Q Consensus 84 ~~~~--~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~--~~----~~~v~~l~~s~~g~~l~s~~~dg~ 155 (1637)
.... .......|.++...++|.+..++..| +..++..+++...+. .. ...|.++...+++..|.+|+. +-
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G 212 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY 212 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence 1100 01124568888888888866666554 778888877653322 11 234888888888776666664 45
Q ss_pred EEEEEecCCCCcccccccccc-cCCCCcEEEEecC-CeEEEEecCCeEEEEeCCCceeEEeeccCC---CCCCccEEEEE
Q psy12802 156 IVRYYVTEDASNFDQQQGRVV-QHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAP---HYKEREFTVAC 230 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~-~~~~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~ 230 (1637)
+..+|..+. . ...+. .....|.++...+ +.+..|+. +.+.+++.....+..+..... .-....|.++.
T Consensus 213 l~~~~~~~~-----~-~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 213 LFQYFPSTG-----Q-IKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF 285 (758)
T ss_dssp EEEEETTTT-----E-EEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE
T ss_pred CeEEcCCCC-----e-EEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE
Confidence 777886542 1 11111 1123467777654 57777774 568888854444444432110 01234688998
Q ss_pred ECCCCCEEEEEecCcEEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceeeeCcEE
Q psy12802 231 SSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFE 310 (1637)
Q Consensus 231 ~sp~g~~l~~~~~d~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 310 (1637)
..++|.. -+|+..|+.++........+.............|.++.-.++|...+ |+.+| +..++..+++.. .+.
T Consensus 286 ~D~~g~l-WiGT~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~---~~~ 359 (758)
T 3ott_A 286 ADQEHNI-WLGTDYGISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERH---DAI 359 (758)
T ss_dssp ECTTCCE-EEEESSSEEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCC---CCE
T ss_pred EcCCCCE-EEEeCCcccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccc---eeE
Confidence 8888864 44555675443321111100000000011224688888888887544 55554 556665432110 000
Q ss_pred EEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeeccccceeeee
Q psy12802 311 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVL 377 (1637)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~~~~~~~ 377 (1637)
.+.... .. . ......|.++.-.+++++-+++ ++.+..+|..+++.....
T Consensus 360 -~~~~~~--------~~---~-----~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~ 408 (758)
T 3ott_A 360 -WYRMGD--------KT---Y-----PLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYN 408 (758)
T ss_dssp -EECTTC--------SS---S-----CCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred -EeccCC--------cC---C-----CCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEee
Confidence 000000 00 0 0012257788777778877776 568999998887765543
No 460
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=0.00022 Score=67.44 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
.+..+|..+...|++++|+.+|.++... .|. .+.++..+|.++...|++++|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL------------------------DPH-NHVLYSNRSAAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------CCC-cHHHHHHHHHHHHhhccHHHHHHH
Confidence 4456778888888888888877664221 344 567888999999999999998888
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
|.++... .|.....+..+|..+...|++++|+..|.++
T Consensus 61 ~~~~~~~-------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 61 GCKTVDL-------------------------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-------------------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8765322 1334677889999999999999999887764
No 461
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.56 E-value=0.0098 Score=70.02 Aligned_cols=229 Identities=11% Similarity=-0.017 Sum_probs=135.6
Q ss_pred EEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCceee
Q psy12802 50 KGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKTQT 127 (1637)
Q Consensus 50 ~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~~~ 127 (1637)
+|.+..+ ..+|+.+. .+.|+..++... ....+. .....+..++|.+.+. +++-...+.|..+++.++....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~--~~~~~~---~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRS--EYTLLL---NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSC--CCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeec-CccceeeccCCC--cEEEEe---cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 3444445 33444443 456777777653 112221 2345688999998665 4455567889999998877643
Q ss_pred e-cccCCcEEEEEEecCCCeEE-EEeCCCcEEEEEecCCCCccccccccc-ccCCCCcEEEEecC--CeEEEEe-cC-Ce
Q psy12802 128 L-YASNSFVVALCLNVRGAGVL-SGHADGSIVRYYVTEDASNFDQQQGRV-VQHPVPPYALSWPA--GYILAAG-SD-RI 200 (1637)
Q Consensus 128 ~-~~~~~~v~~l~~s~~g~~l~-s~~~dg~i~iwd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~--~~l~~~~-~d-~~ 200 (1637)
+ .........+++++.+..|+ +-...+.|.+.++.. .....+ ...-..+..++++| +.++.+. .. +.
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg------~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS------CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC------CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 3 32334567889998655554 444567888877764 222222 23346788999987 3444433 34 68
Q ss_pred EEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEEEc
Q psy12802 201 VTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK 278 (1637)
Q Consensus 201 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 278 (1637)
|..++.+|.....+... .-.....++++|++..|..+.... |..++++..... ............+++
T Consensus 227 I~r~~~dG~~~~~~~~~----~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-----~~~~~~~~~P~giav- 296 (386)
T 3v65_B 227 IEASSMDGSGRRIIADT----HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-----AVISQGLPHPFAITV- 296 (386)
T ss_dssp EEEEETTSCSCEEEECS----SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-----EEECSSCSSEEEEEE-
T ss_pred EEEEeCCCCCcEEEEEC----CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-----EEEECCCCCceEEEE-
Confidence 88888777665555321 233578999999887777765554 777776543221 011112335567777
Q ss_pred CCCCEEEEEecCCcEEEEEcccc
Q psy12802 279 RDGSRIACGGLCGSVELFESVLK 301 (1637)
Q Consensus 279 pdg~~l~~~~~dg~v~iwd~~~~ 301 (1637)
..+..+++-...+.|..++..++
T Consensus 297 ~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 297 FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp ETTEEEEEETTTTEEEEEETTTC
T ss_pred ECCEEEEeeCCCCeEEEEECCCC
Confidence 34444555556677777775433
No 462
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.55 E-value=2.7e-05 Score=95.02 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHHH
Q psy12802 1135 TTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNR 1214 (1637)
Q Consensus 1135 ~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 1214 (1637)
.++..+|..+..+|+|++|+++|.++ +.....+..++..+|..+.+.|++++|++.|.+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~A---------------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQA---------------------IELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH---------------------HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34566788888999999999999988 444555666788889999998888888888866
Q ss_pred hccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Q psy12802 1215 LSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAER 1294 (1637)
Q Consensus 1215 ~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ai~~~~~~~~~~~a~~ 1294 (1637)
+ ....+..+.+++.+|..|...|++++|++.|.++ +.
T Consensus 66 a------------------------l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a------l~------------- 102 (477)
T 1wao_1 66 A------------------------IELDKKYIKGYYRRAASNMALGKFRAALRDYETV------VK------------- 102 (477)
T ss_dssp H------------------------HHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HH-------------
T ss_pred H------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HH-------------
Confidence 5 1235667889999999999999999999999987 22
Q ss_pred HHhhhCCCChHHHHHHhHHH--HHhcCChhhHHHHHHH
Q psy12802 1295 IANEHDPTSIGDILLNQSKC--EFENENFSKFETLLLR 1330 (1637)
Q Consensus 1295 ~a~~~~~~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~ 1330 (1637)
..|.. +.++..++.. +..+|++++|+..+.+
T Consensus 103 ----~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 103 ----VKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp ----HSTTC-TTHHHHHHHHHHHHHHHHHCCC------
T ss_pred ----hCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34442 3455555555 7778888888887764
No 463
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.54 E-value=7.8e-05 Score=69.91 Aligned_cols=93 Identities=15% Similarity=0.027 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 960 LEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 960 l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
....+|..+...|++++|+.+|.++... .|. ...++..+|.++...|++++|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~ 62 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL------------------------DPE-ESKYWLMKGKALYNLERYEEAVDC 62 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh------------------------CcC-CHHHHHHHHHHHHHccCHHHHHHH
Confidence 4457888888888888888888765322 344 567888999999999999999888
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhh--HHHHHHHHHHHHHHc-CCHHHHHHHHHHh
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGE--IKATFIQKCKQLEEE-NKFKEAERLYLII 1102 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~a~~~~~~-g~~~~A~~~y~~~ 1102 (1637)
|.++.... +. ...++..+|..+... |++++|++.|.+.
T Consensus 63 ~~~a~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 63 YNYVINVI-------------------------EDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHTS-------------------------CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHhC-------------------------cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 87753221 23 467888999999999 9999999988774
No 464
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.54 E-value=0.00035 Score=67.58 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCc---cchHHHHHHHHHhcCcchHHHHH
Q psy12802 1136 TLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQ---EAVEPVVYLWAKSLGGDSAVRLL 1212 (1637)
Q Consensus 1136 ~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 1212 (1637)
++..+|..+...|+|++|+..|.++ +...+.+. .++..+|..+...|++++|+..|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~---------------------~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 62 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSF---------------------LELYPNGVYTPNALYWLGESYYATRNFQLAEAQF 62 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH---------------------HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4677899999999999999999887 33333444 46778888888888888888888
Q ss_pred HHhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1213 NRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1213 ~~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
.+. +......+..+.+++.+|..+...|++++|+..|.++
T Consensus 63 ~~~---------------------~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 63 RDL---------------------VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHH---------------------HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH---------------------HHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 1111112223788999999999999999999999887
No 465
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00035 Score=69.51 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCC
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKD 1032 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~ 1032 (1637)
+........+|..+...|++++|+.+|.++... .|+ ....++..+|.+|...|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~a~~~~~~~~ 80 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL------------------------DATPQDQAVLHRNRAACHLKLED 80 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS------------------------CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------------cccchHHHHHHHHHHHHHHHHcc
Confidence 344556678899999999999999998876443 232 026688999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1033 YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1033 ~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+++|+..|.++.... +....++..+|..+..+|++++|+..|.++
T Consensus 81 ~~~A~~~~~~~~~~~-------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 81 YDKAETEASKAIEKD-------------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHHHT-------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-------------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887753221 334678889999999999999999887663
No 466
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.53 E-value=0.024 Score=64.63 Aligned_cols=222 Identities=7% Similarity=-0.091 Sum_probs=131.9
Q ss_pred eEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCC----Cceee-ecccC
Q psy12802 60 KLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKA----NKTQT-LYASN 132 (1637)
Q Consensus 60 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~----~~~~~-~~~~~ 132 (1637)
+|+.+. .+.|+..++.+.. ...+ ......+.+++|++.+. +++-...+.|..+++.+ ..... +....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~--~~~~---~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSE--YTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCC--CEEE---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEEC-CCeEEEEECCCcc--eEeh---hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 344444 3568888887631 1111 12345678999998765 45555678999999987 22232 22233
Q ss_pred CcEEEEEEecCCCeE-EEEeCCCcEEEEEecCCCCcccccccccc-cCCCCcEEEEecC--CeEEEEec-C-CeEEEEeC
Q psy12802 133 SFVVALCLNVRGAGV-LSGHADGSIVRYYVTEDASNFDQQQGRVV-QHPVPPYALSWPA--GYILAAGS-D-RIVTIYES 206 (1637)
Q Consensus 133 ~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~~~~~g~~~~~~~~~-~~~~~v~~~~~~~--~~l~~~~~-d-~~i~iwd~ 206 (1637)
.....+++++.+..| ++-...+.|.+.+... .....+. .....+..++++| +.++.+.. . +.|...+.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g------~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTS------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCC------CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 456889999765555 4445678999998764 2222222 2345788999987 34544443 2 68888888
Q ss_pred CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEE
Q psy12802 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI 284 (1637)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 284 (1637)
+|.....+... .-.....++++|++..|..+.... |..++++...... .............+++. .+..+
T Consensus 151 dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~---~~~~~~~~~~P~giav~-~~~ly 222 (316)
T 1ijq_A 151 NGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT---ILEDEKRLAHPFSLAVF-EDKVF 222 (316)
T ss_dssp TSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EEECTTTTSSEEEEEEE-TTEEE
T ss_pred CCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE---EeecCCccCCcEEEEEE-CCEEE
Confidence 88766555321 234678999999888777766544 8888876432210 00000112345667774 34445
Q ss_pred EEEecCCcEEEEEcccc
Q psy12802 285 ACGGLCGSVELFESVLK 301 (1637)
Q Consensus 285 ~~~~~dg~v~iwd~~~~ 301 (1637)
++-...+.|..++..++
T Consensus 223 ~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 223 WTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEECCCCeEEEEeCCCC
Confidence 55556677888776444
No 467
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.51 E-value=0.071 Score=61.56 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=114.1
Q ss_pred EEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCCcccccccc
Q psy12802 96 TTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDASNFDQQQGR 174 (1637)
Q Consensus 96 ~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~g~~~~~~~ 174 (1637)
+|....++..++.+ ....|+..++.+.....+......+..++|++.+..|.... ..+.|..+++... ....
T Consensus 37 ~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~------~~~~ 109 (349)
T 3v64_C 37 SCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS------NVEE 109 (349)
T ss_dssp CEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEE
T ss_pred cccccccCceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC------CceE
Confidence 44444453223333 34568888888776654444455689999998666655554 5788988888753 2222
Q ss_pred c-ccCCCCcEEEEecC--CeE-EEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC--c-EE
Q psy12802 175 V-VQHPVPPYALSWPA--GYI-LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N-IK 247 (1637)
Q Consensus 175 ~-~~~~~~v~~~~~~~--~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--~-i~ 247 (1637)
+ ......+..+++++ +.| ++-...+.|.+.+.+|.....+... .-.....++++|.+..|...... + |.
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT----TCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC----CCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 2 22234456777764 444 4555678999999777655544321 23457899999977666655443 3 66
Q ss_pred EEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEe-cCCcEEEEEcc
Q psy12802 248 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV 299 (1637)
Q Consensus 248 i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~v~iwd~~ 299 (1637)
.++.+..... ............++|+|++..|..+. ..+.|..++..
T Consensus 186 r~~~dG~~~~-----~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 186 ASSMDGSGRR-----IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EEETTSCSCE-----ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcE-----EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 6665543211 01112234678999998777666554 45678888874
No 468
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.49 E-value=0.058 Score=61.39 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=108.4
Q ss_pred CCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEE-eCCCcEEEEEecCCCCcccccccc-cccCCCCcEEEEec
Q psy12802 111 SDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG-HADGSIVRYYVTEDASNFDQQQGR-VVQHPVPPYALSWP 188 (1637)
Q Consensus 111 ~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~~~~~~-~~~~~~~v~~~~~~ 188 (1637)
....|+..|+.++....+......+..++|++++..|..+ ..++.|..+++.....+ ..... +...-..+..++++
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~~p~glavd 85 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQAPDGLAVD 85 (316)
T ss_dssp CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEE
T ss_pred CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--cccEEEEeCCCCCcCEEEEe
Confidence 3456899999888764444455678999999976665555 45689999988752110 11111 22222456777775
Q ss_pred C--CeE-EEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC--c-EEEEEeCCCCCccccCC
Q psy12802 189 A--GYI-LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N-IKLFAWSPSKSVWEEQP 262 (1637)
Q Consensus 189 ~--~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--~-i~i~~~~~~~~~~~~~~ 262 (1637)
+ +.+ ++-...+.|.+++.+|.....+... .......++++|.+..|..+... + |..++.+.....
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----- 156 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----- 156 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-----
T ss_pred ecCCeEEEEECCCCEEEEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-----
Confidence 4 444 4456678999999777655554321 22367899999977766655543 3 666665432211
Q ss_pred CcccCCCcceeEEEEcCCCCEEEEEe-cCCcEEEEEcc
Q psy12802 263 NKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV 299 (1637)
Q Consensus 263 ~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~v~iwd~~ 299 (1637)
............++|+|++..|..+. ..+.|..+|..
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 00012234678999999877766554 55688888874
No 469
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00011 Score=85.21 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
...+..+|..+...|+|++|+.+|.++-....--..+...|+++++....+ ..++..+|..+.+.|++++|+..|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~----~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK----NPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH----THHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345778999999999999999999998432211123444555555554332 1356777888888888887777775
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
++ + ...+....+++.+|..|...|++++|+..|.++
T Consensus 255 ~a-------------------l-----~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 255 IV-------------------L-----TEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HH-------------------H-----HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HH-------------------H-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 1 124567788999999999999999999999988
No 470
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.48 E-value=0.00092 Score=64.52 Aligned_cols=102 Identities=9% Similarity=0.060 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
+..+..+|..+...|++++|+.+|.++ +...+.+..++..+|..+...|++++|+..|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 62 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKA---------------------KELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HhcCCccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 567889999999999999999999988 33333445567788888888888888888886
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHc
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 1273 (1637)
++..... ... ...+..+.++..+|..+...|++++|+..|.++
T Consensus 63 ~~~~~~~------~~~-----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 63 KAIEVGR------ENR-----------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHH------HST-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhcc------ccc-----------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5422111 000 000112678889999999999999999999887
No 471
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00085 Score=66.60 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHH
Q psy12802 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095 (1637)
Q Consensus 1016 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 1095 (1637)
....+..+|..+...|++++|+++|.++..... +.+....++..+|..|...|++++|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~A 84 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA----------------------TPQDQAVLHRNRAACHLKLEDYDKA 84 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC----------------------CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc----------------------cchHHHHHHHHHHHHHHHHccHHHH
Confidence 567889999999999999999999988754321 1122367889999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1096 ~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+..|.++ ++ ..|. ...++..+|..+...|++++|+.+|.++
T Consensus 85 ~~~~~~~-------------------~~----~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 85 ETEASKA-------------------IE----KDGG-DVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHH-------------------HH----HTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------Hh----hCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8886653 11 1232 2578899999999999999999999988
No 472
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=0.00054 Score=81.06 Aligned_cols=95 Identities=6% Similarity=-0.021 Sum_probs=71.1
Q ss_pred hcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCCHHHHHHHHHhccCHH
Q psy12802 970 ENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHE 1047 (1637)
Q Consensus 970 ~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 1047 (1637)
..|+|++|+.+|+++ +++.++.-.++ ....++++||.+|..+|+|++|+.+|+++
T Consensus 310 ~~g~~~eA~~~~~~~-------------------L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a---- 366 (433)
T 3qww_A 310 HYKSPSELLEICELS-------------------QEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI---- 366 (433)
T ss_dssp TTSCHHHHHHHHHHH-------------------HHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred hccCHHHHHHHHHHH-------------------HHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH----
Confidence 456778887776553 44444433332 25567999999999999999999999875
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhc--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1048 QIVDMYHQTGQWEKAYAIAEQHL--NVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1048 ~~~~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+++.++.. +.|.....++++|.+|..+|+|++|+.+|.++
T Consensus 367 ---------------L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 367 ---------------IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp ---------------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44444432 35788999999999999999999999996663
No 473
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.42 E-value=0.016 Score=71.93 Aligned_cols=190 Identities=15% Similarity=0.135 Sum_probs=105.0
Q ss_pred CCeEEEEEC-CCeEEEEEc-CCCCCCceeEeeccCCC----------CCEEEEEEcC-CCC----EEEEeCCCcEEEEEc
Q psy12802 58 STKLAVAQS-DNIIFIYKL-GDDWGDKKVICNKFIQQ----------CPVTTMVWLA-DGP----IIYGQSDGKIKAAHV 120 (1637)
Q Consensus 58 ~~~la~~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~~----------~~v~~v~~s~-~~~----l~~~~~d~~v~vwd~ 120 (1637)
+..|.+++. ++.|.-+|. .++. ..-....... .....++.+| ++. +++++.|+.|..+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~---~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGT---ILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS---EEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCc---EEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 456666776 788888888 6651 1111111100 0012344533 444 888889999999999
Q ss_pred CCCcee-e--ecccC--CcEEE-EEEecCCCeEEEEe------CCCcEEEEEecCCCCcccccccccccC----------
Q psy12802 121 KANKTQ-T--LYASN--SFVVA-LCLNVRGAGVLSGH------ADGSIVRYYVTEDASNFDQQQGRVVQH---------- 178 (1637)
Q Consensus 121 ~~~~~~-~--~~~~~--~~v~~-l~~s~~g~~l~s~~------~dg~i~iwd~~~~~~g~~~~~~~~~~~---------- 178 (1637)
++|+.. . +..+. ..+.+ ... .++ .+++++ .+|.|+-+|..+.. .+-++...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~-----~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGE-----QVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCC-----EEEEEESSSCHHHHTBCT
T ss_pred CCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCc-----EEEEEcCCCCcccccccc
Confidence 999872 2 21110 01111 111 134 455554 37899999988743 22211110
Q ss_pred ---------------------------CCCc-EEEEecC--CeEEEEecC----------------CeEEEEe-CCCcee
Q psy12802 179 ---------------------------PVPP-YALSWPA--GYILAAGSD----------------RIVTIYE-SDGRVH 211 (1637)
Q Consensus 179 ---------------------------~~~v-~~~~~~~--~~l~~~~~d----------------~~i~iwd-~~~~~~ 211 (1637)
...+ ..+++.+ +.++.++.+ +.|..+| .+|+.+
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence 0001 1233433 466666654 3789999 889998
Q ss_pred EEeeccCCCCCCc-------cEEEEEEC-CCC---CEEEEEecCc-EEEEEeCCCCCcccc
Q psy12802 212 RIFDYTAPHYKER-------EFTVACSS-PSG---QAVVVGSYDN-IKLFAWSPSKSVWEE 260 (1637)
Q Consensus 212 ~~~~~~~~~~~~~-------~i~~~~~s-p~g---~~l~~~~~d~-i~i~~~~~~~~~~~~ 260 (1637)
..+... +|+. ...-+... .+| ..++.++.++ +.++|..+++..|..
T Consensus 292 W~~q~~---~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 292 FGYQKT---PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEESS---TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEeecC---CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 877653 1211 11122222 577 4677778888 889998888877754
No 474
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.41 E-value=0.00038 Score=67.31 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=67.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCCHHHHHHH
Q psy12802 962 EEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKDYKTAEKI 1039 (1637)
Q Consensus 962 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~ 1039 (1637)
..+|..+...|++++|+.+|.++... .|+ ..+.++..+|.++...|++++|+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~------------------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 61 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL------------------------YPNGVYTPNALYWLGESYYATRNFQLAEAQ 61 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH------------------------CCCCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 35677777777777777777653211 222 1236888999999999999999988
Q ss_pred HHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12802 1040 YSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLI 1101 (1637)
Q Consensus 1040 ~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 1101 (1637)
|.++.... .+.+..+.++..+|..+..+|++++|+..|.+
T Consensus 62 ~~~~~~~~----------------------p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 62 FRDLVSRY----------------------PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHC----------------------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHC----------------------CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87753321 11123377888999999999999999998776
No 475
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.40 E-value=0.00028 Score=65.97 Aligned_cols=95 Identities=17% Similarity=0.014 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHhcCCccchHHHHHHHHHhcCcchHHHHHH
Q psy12802 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLN 1213 (1637)
Q Consensus 1134 ~~~~~~la~~~~~~g~~~~A~~~y~~a~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 1213 (1637)
..++..+|..+...|++++|+.+|.++ +.....+..++..+|..+...|++++|++.|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKA---------------------IQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHH---------------------HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH---------------------HHhCcCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 456788999999999999999999888 33334445566778888888888888877775
Q ss_pred HhccHHHHHHHHHhcCChHHHHHHHHhcCCCC--cHHHHHHHHHHHHhC-CChHHHHHHHHHc
Q psy12802 1214 RLSLLESCISNACDTYQFDFAFELAKIGMKSK--LEEVHYKYALVLEDN-GQFNEAETQFIKA 1273 (1637)
Q Consensus 1214 ~~~~~~~~i~~~~~~~~~~~a~~l~~~~~~~~--~~~~~~~~a~~~~~~-g~~~~A~~~~~~a 1273 (1637)
++ ....+. .+.++..+|..+... |++++|++.|.++
T Consensus 65 ~a------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 65 YV------------------------INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HH------------------------HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HH------------------------HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 54 112444 688999999999999 9999999999887
No 476
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00014 Score=71.05 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVK--- 1031 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g--- 1031 (1637)
|...+.+..||.++...++++.+..... .+++|+..|.+ |+.+ +|+ ...+|+.+|.+|.+.|
T Consensus 33 P~~aea~~n~G~~l~~l~~~~~g~~al~---~~~eAi~~le~------AL~l-----dP~-~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 33 PLDADNLTRWGGVLLELSQFHSISDAKQ---MIQEAITKFEE------ALLI-----DPK-KDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHH------HHHH-----CTT-CHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcccchhhhhHh---HHHHHHHHHHH------HHHh-----CcC-cHHHHHHHHHHHHHhcccC
Confidence 4455577899999999988753332211 12222222221 2222 666 7889999999999885
Q ss_pred --------CHHHHHHHHHhccCHHH
Q psy12802 1032 --------DYKTAEKIYSHCDMHEQ 1048 (1637)
Q Consensus 1032 --------~~~~A~~~~~~~~~~~~ 1048 (1637)
++++|+++|+++...+.
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999865543
No 477
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00076 Score=79.78 Aligned_cols=94 Identities=14% Similarity=-0.024 Sum_probs=72.2
Q ss_pred HhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhc--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCch
Q psy12802 1029 TVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHL--NVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPD 1106 (1637)
Q Consensus 1029 ~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~ 1106 (1637)
..|+|++|+.+|++ |+++.++.+ +.+....++.++|.+|..+|+|++|+.+|+++
T Consensus 310 ~~g~~~eA~~~~~~-------------------~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a---- 366 (433)
T 3qww_A 310 HYKSPSELLEICEL-------------------SQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI---- 366 (433)
T ss_dssp TTSCHHHHHHHHHH-------------------HHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred hccCHHHHHHHHHH-------------------HHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH----
Confidence 34677777766655 455555543 35678899999999999999999999997664
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC---CchHHHHHHHHHHHHHccCHHHHHHHHHHc
Q psy12802 1107 LAISMFKNQRQYENMIKLVRNYHP---DLLDTTLLHLAQECEESKNYKQAEKYYLDC 1160 (1637)
Q Consensus 1107 ~ai~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~y~~a 1160 (1637)
+.+.++..+ +....++++||..|..+|+|++|+.+|.+|
T Consensus 367 ---------------L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 367 ---------------IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp ---------------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 334444333 345678999999999999999999999998
No 478
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.38 E-value=0.0045 Score=76.99 Aligned_cols=198 Identities=15% Similarity=0.074 Sum_probs=113.1
Q ss_pred CCCEEEEeCCCcEEEEEcCCCce-eeecccCCc---------EEEEEEecCCCeEEEEeCCCcEEEEEecCCCCcccccc
Q psy12802 103 DGPIIYGQSDGKIKAAHVKANKT-QTLYASNSF---------VVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ 172 (1637)
Q Consensus 103 ~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~---------v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~g~~~~~ 172 (1637)
++.+++++.++.|.-+|..+|+. -........ ...+++ .+..+++++.|+.|.-+|..+.. .+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~-----~~ 140 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGK-----VV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCC-----EE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCC-----EE
Confidence 55566666644599999999987 222211110 011222 35678888899999999988743 33
Q ss_pred cccccCC----CCcE-EEEecCC------eEEEEec------CCeEEEEe-CCCceeEEeeccCCC--------------
Q psy12802 173 GRVVQHP----VPPY-ALSWPAG------YILAAGS------DRIVTIYE-SDGRVHRIFDYTAPH-------------- 220 (1637)
Q Consensus 173 ~~~~~~~----~~v~-~~~~~~~------~l~~~~~------d~~i~iwd-~~~~~~~~~~~~~~~-------------- 220 (1637)
.+..... ..+. +.....+ .+++++. ++.|..+| .+|+.+.+.......
T Consensus 141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~ 220 (582)
T 1flg_A 141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD 220 (582)
T ss_dssp EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence 2222111 0010 1111123 5666553 78999999 789988765432100
Q ss_pred -C---------------------CCccEEEEEECCCCCEEEEEec--------------------C----c-EEEEEeCC
Q psy12802 221 -Y---------------------KEREFTVACSSPSGQAVVVGSY--------------------D----N-IKLFAWSP 253 (1637)
Q Consensus 221 -~---------------------~~~~i~~~~~sp~g~~l~~~~~--------------------d----~-i~i~~~~~ 253 (1637)
. ....-..++++|+...+.+++. | + |..+|..+
T Consensus 221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 0 0000123567777778877663 2 3 77888888
Q ss_pred CCCccccCCCcccC----CCcceeEEEEc-CCCC---EEEEEecCCcEEEEEccccceeeeC
Q psy12802 254 SKSVWEEQPNKTIP----NLYTISALSWK-RDGS---RIACGGLCGSVELFESVLKRTIWKG 307 (1637)
Q Consensus 254 ~~~~~~~~~~~~~~----~~~~i~~l~~s-pdg~---~l~~~~~dg~v~iwd~~~~~~~~~~ 307 (1637)
++..|......... ......-+... .+|+ .++.++.+|.++++|..+++.++..
T Consensus 301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 362 (582)
T 1flg_A 301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF 362 (582)
T ss_dssp CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence 88888654322110 01111112222 4674 6888999999999999999888663
No 479
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.37 E-value=0.77 Score=59.61 Aligned_cols=312 Identities=9% Similarity=0.059 Sum_probs=172.7
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEEcCC--------CCcccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCC
Q psy12802 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQN--------GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG 80 (1637)
Q Consensus 9 ~~~~~i~~~~~spdg~~la~~~~d~~i~vwd~~~--------~~h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~ 80 (1637)
..++.|+++.-..+|.+.+. +.+| +..+|-.. ......|.++.-.++| .|-+|+.+| +..||..+.
T Consensus 19 l~~n~V~~I~qD~~G~lWig-T~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~-- 92 (758)
T 3ott_A 19 AEASVVSCFLQDSEGLIWIG-SNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRAD-- 92 (758)
T ss_dssp SSCCCEEEEEECTTSCEEEE-ESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTT--
T ss_pred cccceEEEEEECCCCCEEEE-ECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCC--
Confidence 45678999999999976543 3343 55566321 1123468888877776 555666655 778997763
Q ss_pred CceeEeeccCCCCCEEEEEEcCCCCEEEEeCCCcEEEEEcCCCceeeec-----ccCCcEEEEEEecCCCeEEEEeCCCc
Q psy12802 81 DKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLY-----ASNSFVVALCLNVRGAGVLSGHADGS 155 (1637)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~-----~~~~~v~~l~~s~~g~~l~s~~~dg~ 155 (1637)
+...........|.++.. .+|.+..++.+ -+..+|..+++...+. .....|.++...++|...+ |+.+ -
T Consensus 93 --~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G 166 (758)
T 3ott_A 93 --RYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-G 166 (758)
T ss_dssp --EECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-E
T ss_pred --EEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-C
Confidence 211111112345777754 45666666666 5888998887764441 1134688888888887655 4554 4
Q ss_pred EEEEEecCCCCcccccccccc--c----CCCCcEEEEecC--CeEEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEE
Q psy12802 156 IVRYYVTEDASNFDQQQGRVV--Q----HPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFT 227 (1637)
Q Consensus 156 i~iwd~~~~~~g~~~~~~~~~--~----~~~~v~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 227 (1637)
|..++..+. . ...+. . ....|.++...+ +.+..|+. +.+..+|.....+..+... ....|.
T Consensus 167 l~~~~~~~~-----~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l----~~~~i~ 235 (758)
T 3ott_A 167 LCRYIPSNG-----K-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF----HNNSIK 235 (758)
T ss_dssp EEEEETTTT-----E-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE----EEEEEE
T ss_pred HhhCccCCC-----c-eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC----CCCeEE
Confidence 777776542 1 11111 1 123477887764 35666664 5688888544444333211 223588
Q ss_pred EEEECCCCCEEEEEecCcEEEEEeCCCCCc-cccCCC-cccCCCcceeEEEEcCCCCEEEEEecCCcEEEEEccccceee
Q psy12802 228 VACSSPSGQAVVVGSYDNIKLFAWSPSKSV-WEEQPN-KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW 305 (1637)
Q Consensus 228 ~~~~sp~g~~l~~~~~d~i~i~~~~~~~~~-~~~~~~-~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~iwd~~~~~~~~ 305 (1637)
++...++|.+.+. +.+|+.+++....... +..... ...-....|.++....+|.. -+|+..| +.++... .
T Consensus 236 ~i~~d~~g~lWig-T~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~-~---- 307 (758)
T 3ott_A 236 SLALDGNGDLLAG-TDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYN-S---- 307 (758)
T ss_dssp EEEECTTCCEEEE-ETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCC-C----
T ss_pred EEEEcCCCCEEEE-eCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccC-C----
Confidence 8888888876554 4667777765543211 000000 00112246888888888874 4455556 5443221 1
Q ss_pred eCcEEEEEecCCeEEEecCCCCCCCceeEEecccCceeeEEEEecCceEEEEeCCCcEEEeecccc
Q psy12802 306 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRN 371 (1637)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~lv~~~~~~i~i~d~~~~ 371 (1637)
.+..... .... ....+..|.++...++|.+-+++. +.+..++..++
T Consensus 308 --~~~~~~~-------~~~~----------~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~ 353 (758)
T 3ott_A 308 --ALQFIPI-------SQIT----------GTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAG 353 (758)
T ss_dssp ---CEEEEH-------HHHS----------CSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTS
T ss_pred --ceeEEec-------ccCC----------CCCCCceEEEEEEcCCCCEEEeeC-Ccceeeccccc
Confidence 0100000 0000 001123577787777788887764 56777776543
No 480
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.37 E-value=9.4e-05 Score=90.23 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHH
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 1034 (1637)
+.....+..+|.++..+|++++|+.+|.++... +|+ .+.++..+|.+|...|+++
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------------------~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------------------------DKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------------------CTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------CCC-CHHHHHHHHHHHHHcCCHH
Confidence 444567778999999999999999988775332 454 6778999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHH--HHHcCCHHHHHHHHHHh
Q psy12802 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQ--LEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1035 ~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~--~~~~g~~~~A~~~y~~~ 1102 (1637)
+|++.|+++.... |....++..++.. +..+|++++|++.|.+.
T Consensus 92 eA~~~~~~al~~~-------------------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 92 AALRDYETVVKVK-------------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHS-------------------------TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999888764321 2233455556666 78889999999988853
No 481
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.36 E-value=0.019 Score=66.48 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=117.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------------cccceEEEEECCC---CCeEEEEEC-C-----CeEE
Q psy12802 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR------------KSYVVKGLAFSPD---STKLAVAQS-D-----NIIF 71 (1637)
Q Consensus 13 ~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~------------h~~~V~~~~~spd---~~~la~~~~-d-----~~i~ 71 (1637)
....++|+|||+++++- ..+.|++++ .+. .......|+|+|| +.+|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 45789999999966664 458999988 222 1346789999998 556655443 2 5677
Q ss_pred EEEcCCCCC-CceeEee-cc---CCCCCEEEEEEcCCCC-EEEEeC-------------CCcEEEEEcCCC---------
Q psy12802 72 IYKLGDDWG-DKKVICN-KF---IQQCPVTTMVWLADGP-IIYGQS-------------DGKIKAAHVKAN--------- 123 (1637)
Q Consensus 72 iw~~~~~~~-~~~~~~~-~~---~~~~~v~~v~~s~~~~-l~~~~~-------------d~~v~vwd~~~~--------- 123 (1637)
.|+...+.. ..+.+.. .. ........++|.|||. +++.+. .|.|..++.++.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 777764211 1122221 11 1112336899999999 444321 256766766541
Q ss_pred ----ce-eeecccCCcEEEEEEec-CCCeEEEEeCCCcE------EEEEecCCC-Cccc------------ccccccccC
Q psy12802 124 ----KT-QTLYASNSFVVALCLNV-RGAGVLSGHADGSI------VRYYVTEDA-SNFD------------QQQGRVVQH 178 (1637)
Q Consensus 124 ----~~-~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~i------~iwd~~~~~-~g~~------------~~~~~~~~~ 178 (1637)
.. ....++ .....++|+| +|.++++-...+.+ .+.-+.... -||. .+...+ .+
T Consensus 189 ~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~ 266 (352)
T 2ism_A 189 RRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQ 266 (352)
T ss_dssp CTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TT
T ss_pred CCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CC
Confidence 11 111222 3467889999 66665554443331 122222211 1221 111111 22
Q ss_pred CCCcEEEEecCCeEEEE-ecCCeEEEEe--CCCce-----eEEeeccCCCCCCccEEEEEECCCCCEEEEEe
Q psy12802 179 PVPPYALSWPAGYILAA-GSDRIVTIYE--SDGRV-----HRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 242 (1637)
Q Consensus 179 ~~~v~~~~~~~~~l~~~-~~d~~i~iwd--~~~~~-----~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 242 (1637)
...+..++|..+.++++ ...+.|...+ ..+.. ...+-. ....+..+++.|||.+.++..
T Consensus 267 ~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 GFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECCCCcEEEEEe
Confidence 33556777755544444 3456677666 22221 112211 124688999999997766653
No 482
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.35 E-value=0.00015 Score=68.73 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=53.0
Q ss_pred ccchHHHHHHHHHHHHHhCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCH
Q psy12802 1013 KQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKF 1092 (1637)
Q Consensus 1013 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 1092 (1637)
|+ .+.++..+|.+|...|++++|+..|.++.... |..+.++..+|.++...|++
T Consensus 24 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------------p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 24 KD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------------------------PNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred cc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCchHHHHHHHHHHHHcCCH
Confidence 44 67789999999999999999999998754321 44578889999999999999
Q ss_pred HHHHHHHHHh
Q psy12802 1093 KEAERLYLII 1102 (1637)
Q Consensus 1093 ~~A~~~y~~~ 1102 (1637)
++|+..|.++
T Consensus 78 ~~A~~~~~~a 87 (117)
T 3k9i_A 78 EQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987763
No 483
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.35 E-value=0.058 Score=63.34 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=112.7
Q ss_pred EEEEcCCCCEEEEeCCCcEEEEEcCCCceeeecccCCcEEEEEEecCCCeEEEE-eCCCcEEEEEecCCCCccccccccc
Q psy12802 97 TMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG-HADGSIVRYYVTEDASNFDQQQGRV 175 (1637)
Q Consensus 97 ~v~~s~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~~~~~~~ 175 (1637)
|.+..+. .++..+....|+.+++.++....+......+..++|++.+..|... ...+.|..+++... .....+
T Consensus 81 C~~~~~~-~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~-----~~~~~~ 154 (386)
T 3v65_B 81 CKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-----NVEEVV 154 (386)
T ss_dssp EEECSSC-CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----CEEEEE
T ss_pred ECCcccc-ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC-----CcEEEE
Confidence 4444442 2333344567899999887765555555668999999866655544 45788888887752 111112
Q ss_pred ccCCCCcEEEEecC--Ce-EEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc---EEEE
Q psy12802 176 VQHPVPPYALSWPA--GY-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---IKLF 249 (1637)
Q Consensus 176 ~~~~~~v~~~~~~~--~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---i~i~ 249 (1637)
......+..+++++ +. +++-...+.|.+.+.+|.....+... .-.....++++|.+..|....... |..+
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS----SCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 22223455666654 44 44555577888888777655444321 234678999999877766665443 5555
Q ss_pred EeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEE-ecCCcEEEEEcc
Q psy12802 250 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV 299 (1637)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~v~iwd~~ 299 (1637)
+.+..... ............++|+|++..|..+ +..+.|..++..
T Consensus 231 ~~dG~~~~-----~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 231 SMDGSGRR-----IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp ETTSCSCE-----EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred eCCCCCcE-----EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 55432211 1111223457899999877766554 455678777764
No 484
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.34 E-value=0.0023 Score=75.92 Aligned_cols=97 Identities=5% Similarity=-0.136 Sum_probs=70.2
Q ss_pred HHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCCHHHHHHHHHhccC
Q psy12802 968 LIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKDYKTAEKIYSHCDM 1045 (1637)
Q Consensus 968 l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 1045 (1637)
+..+|+|++|+.+|+++... .+....++ ....++++||.+|..+|+|++|+.+|+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~-------------------~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-- 355 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISS-------------------NSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-- 355 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTC-------------------SSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--
T ss_pred HHhhccHHHHHHHHHHHHHh-------------------ccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH--
Confidence 34667777887777665321 11111221 25667999999999999999999998775
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhh--cChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12802 1046 HEQIVDMYHQTGQWEKAYAIAEQH--LNVGEIKATFIQKCKQLEEENKFKEAERLYLII 1102 (1637)
Q Consensus 1046 ~~~~~~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~ 1102 (1637)
+++.++. .+.|.....++++|.+|..+|++++|+.+|.++
T Consensus 356 -----------------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 356 -----------------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp -----------------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444443 235788999999999999999999999986553
No 485
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.34 E-value=0.057 Score=63.70 Aligned_cols=222 Identities=7% Similarity=-0.073 Sum_probs=131.8
Q ss_pred eEEEEECCCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC-E-EEEeCCCcEEEEEcCCC----ceee-ecccC
Q psy12802 60 KLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-I-IYGQSDGKIKAAHVKAN----KTQT-LYASN 132 (1637)
Q Consensus 60 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-l-~~~~~d~~v~vwd~~~~----~~~~-~~~~~ 132 (1637)
+|+.+. ...|+..++... ....+ ......+..++|++.+. + ++-...+.|+.+++.+. .... +....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~--~~~~~---~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRS--EYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSC--SCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCc--ceeEe---ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 567888887653 11222 23456788999998666 4 44556788999998763 2333 33345
Q ss_pred CcEEEEEEecCCCeE-EEEeCCCcEEEEEecCCCCccccccccc-ccCCCCcEEEEecC--CeEEEEe--cCCeEEEEeC
Q psy12802 133 SFVVALCLNVRGAGV-LSGHADGSIVRYYVTEDASNFDQQQGRV-VQHPVPPYALSWPA--GYILAAG--SDRIVTIYES 206 (1637)
Q Consensus 133 ~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~--~~l~~~~--~d~~i~iwd~ 206 (1637)
.....+++.+.+..| ++-...+.|.+.++.. .....+ ......+..|+++| +.++.+. ..+.|...+.
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g------~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTT------CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCC------CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 678899999855544 4545578888888764 222222 23445688999987 4454443 2478888888
Q ss_pred CCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEE
Q psy12802 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI 284 (1637)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 284 (1637)
+|.....+-.. .-.....++++|++..|..+.... |..++++.....- ............++++. .+..+
T Consensus 233 dG~~~~~~~~~----~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~---~~~~~~~l~~P~gl~v~-~~~ly 304 (400)
T 3p5b_L 233 NGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT---ILEDEKRLAHPFSLAVF-EDKVF 304 (400)
T ss_dssp TSCSCEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE---EEECSSTTSSEEEEEEE-TTEEE
T ss_pred CCCccEEEEEC----CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE---EEeCCCCCCCCEEEEEe-CCEEE
Confidence 88766555321 224678999999888887776544 8888876533210 00001112344566662 33444
Q ss_pred EEEecCCcEEEEEcccc
Q psy12802 285 ACGGLCGSVELFESVLK 301 (1637)
Q Consensus 285 ~~~~~dg~v~iwd~~~~ 301 (1637)
++-...+.|..+|..++
T Consensus 305 wtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEESSSCSEEEEESSSC
T ss_pred EecCCCCeEEEEEcCCC
Confidence 45556677777775444
No 486
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.33 E-value=0.14 Score=60.31 Aligned_cols=214 Identities=10% Similarity=-0.038 Sum_probs=128.7
Q ss_pred EEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEE-CCCeEEEEEcCCCC--CCceeEeeccCCCCCE
Q psy12802 25 RLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQ-SDNIIFIYKLGDDW--GDKKVICNKFIQQCPV 95 (1637)
Q Consensus 25 ~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~-~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~v 95 (1637)
+|+... ...|+..++.... ....+.+++|++.+..|..+. ..+.|+.+++.... .....+. .......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~--~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE--CSSCSCE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE--eCCCCCc
Confidence 444443 4578888887654 245688999999877776554 56788888876521 1111121 1234567
Q ss_pred EEEEEcCCCC--EEEEeCCCcEEEEEcCCCceeeec-ccCCcEEEEEEecCCCeEEEEeC--CCcEEEEEecCCCCcccc
Q psy12802 96 TTMVWLADGP--IIYGQSDGKIKAAHVKANKTQTLY-ASNSFVVALCLNVRGAGVLSGHA--DGSIVRYYVTEDASNFDQ 170 (1637)
Q Consensus 96 ~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~~g~~~ 170 (1637)
..+++.+.+. +++-...+.|.+.++++.....+. ........|+++|.+..|+.... .+.|...++.. .
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG------~ 235 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG------V 235 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS------C
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC------C
Confidence 8899998554 455566789999999877664443 34456899999997666665543 36788877764 2
Q ss_pred ccccc-ccCCCCcEEEEecC--CeEEEE-ecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecCc-
Q psy12802 171 QQGRV-VQHPVPPYALSWPA--GYILAA-GSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 245 (1637)
Q Consensus 171 ~~~~~-~~~~~~v~~~~~~~--~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~- 245 (1637)
....+ ...-..+..|++++ +.|..+ +..+.|..+|.+|.....+..... .-.....+++ ++..+......+
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~l~~P~gl~v--~~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAV--FEDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS--TTSSEEEEEE--ETTEEEEEESSSC
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC--CCCCCEEEEE--eCCEEEEecCCCC
Confidence 22222 23336788999986 355444 456789999977766555542211 1223455665 333444433333
Q ss_pred -EEEEEe
Q psy12802 246 -IKLFAW 251 (1637)
Q Consensus 246 -i~i~~~ 251 (1637)
|..++.
T Consensus 312 ~V~~~~~ 318 (400)
T 3p5b_L 312 AIFSANR 318 (400)
T ss_dssp SEEEEES
T ss_pred eEEEEEc
Confidence 655553
No 487
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.073 Score=63.28 Aligned_cols=234 Identities=11% Similarity=0.066 Sum_probs=137.0
Q ss_pred ceeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCc----------ccceEEEEE-------CCCCCeEEEEECCC-----
Q psy12802 13 VLQDDVFNLD--IVRLRSEGNVAGIWAWRGQNGRK----------SYVVKGLAF-------SPDSTKLAVAQSDN----- 68 (1637)
Q Consensus 13 ~i~~~~~spd--g~~la~~~~d~~i~vwd~~~~~h----------~~~V~~~~~-------spd~~~la~~~~d~----- 68 (1637)
....++|+|. ++++++....+.|++.|.+.+.. ......++| +++|.+|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999993 44555545456799999876441 225899999 99999777776554
Q ss_pred --eEEEEEcCC--CCCC-c--eeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcC-------CCce-------
Q psy12802 69 --IIFIYKLGD--DWGD-K--KVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVK-------ANKT------- 125 (1637)
Q Consensus 69 --~i~iw~~~~--~~~~-~--~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~-------~~~~------- 125 (1637)
.|.+.+... .+.. . ..+.. .. ....++.+|++. +++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeecc-CC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255555443 1110 0 22221 22 234678899555 5556677889999998 5543
Q ss_pred -----eeec--ccCCcEEEEEEecCCCeEEEE-eCCCcEEEEEecCCCCccccc--ccccccC---------------CC
Q psy12802 126 -----QTLY--ASNSFVVALCLNVRGAGVLSG-HADGSIVRYYVTEDASNFDQQ--QGRVVQH---------------PV 180 (1637)
Q Consensus 126 -----~~~~--~~~~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~g~~~~--~~~~~~~---------------~~ 180 (1637)
..+. +.......++|+|+|+.|.++ +..+.|+.++..... + .. ...+.+. -.
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~-~--~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK-K--EFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT-T--EECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc-c--eecccEEecCCCCCCcccCCcccccccC
Confidence 0111 223456899999999965554 457888887765321 0 10 0111111 12
Q ss_pred CcE-EEEec-------C--CeEEEEecCCeEEEEeCCCceeEEeeccC-----------C--CC------CCccEEEEEE
Q psy12802 181 PPY-ALSWP-------A--GYILAAGSDRIVTIYESDGRVHRIFDYTA-----------P--HY------KEREFTVACS 231 (1637)
Q Consensus 181 ~v~-~~~~~-------~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~--~~------~~~~i~~~~~ 231 (1637)
.+. .+... + +.+++-+....|+.++.+|. +.++-+.. + .+ .-.....+++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 344 34443 2 24445556789999998884 44443320 0 00 1134788999
Q ss_pred CCC-CCEEEEEecCc-EEEEEeCCC
Q psy12802 232 SPS-GQAVVVGSYDN-IKLFAWSPS 254 (1637)
Q Consensus 232 sp~-g~~l~~~~~d~-i~i~~~~~~ 254 (1637)
+++ |.++++-+.+. ||.+++...
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCC
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCC
Confidence 997 65555555555 888877653
No 488
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.31 E-value=0.037 Score=63.90 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=118.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----------cccceEEEEECCC---CCeEEEEEC----C----Ce
Q psy12802 12 NVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGR-----------KSYVVKGLAFSPD---STKLAVAQS----D----NI 69 (1637)
Q Consensus 12 ~~i~~~~~spdg~~la~~~~d~~i~vwd~~~~~-----------h~~~V~~~~~spd---~~~la~~~~----d----~~ 69 (1637)
.....++|.|||+++++- .++.|++++. .+. .......|+|+|+ +..|.++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEE-TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 356789999999866654 4589998863 332 1245789999998 556655443 2 56
Q ss_pred EEEEEcCCCCC---CceeEee-cc-CCCCCEEEEEEcCCCC-EEEEeC-------------CCcEEEEEcCCC-------
Q psy12802 70 IFIYKLGDDWG---DKKVICN-KF-IQQCPVTTMVWLADGP-IIYGQS-------------DGKIKAAHVKAN------- 123 (1637)
Q Consensus 70 i~iw~~~~~~~---~~~~~~~-~~-~~~~~v~~v~~s~~~~-l~~~~~-------------d~~v~vwd~~~~------- 123 (1637)
|..|+...... ..+.+.. .. ........+.|.|||. +++.+. .|.|..++..+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 77777654310 1122211 11 1122346799999999 554322 246666666543
Q ss_pred -ce-eeecccCCcEEEEEEec-CCCeEEEEeCCCc---EEEEEecCCC-Ccccc------------cccccccCCCCcEE
Q psy12802 124 -KT-QTLYASNSFVVALCLNV-RGAGVLSGHADGS---IVRYYVTEDA-SNFDQ------------QQGRVVQHPVPPYA 184 (1637)
Q Consensus 124 -~~-~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~---i~iwd~~~~~-~g~~~------------~~~~~~~~~~~v~~ 184 (1637)
.. ....++ .....++|+| +|.++++-...+. |.+. .... -||.. +...+......+..
T Consensus 187 ~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 187 PNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp TTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 11 122233 3356899999 6766555443222 3332 2111 11110 11111112345677
Q ss_pred EEec--------CCeEEE-EecCCeEEEEeCC--CceeEEeeccCCCCCCccEEEEEECCCCCEEEEEe
Q psy12802 185 LSWP--------AGYILA-AGSDRIVTIYESD--GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 242 (1637)
Q Consensus 185 ~~~~--------~~~l~~-~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 242 (1637)
+.|. .+.+++ ....+.|...+.+ ++....-.... .....+..+++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEe
Confidence 7772 234444 4445677777733 33321111110 1234688999999997666653
No 489
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.31 E-value=0.001 Score=62.88 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHhcCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHccCHHH
Q psy12802 1073 GEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQ 1152 (1637)
Q Consensus 1073 ~~~~~~~~~~a~~~~~~g~~~~A~~~y~~~~~~~~ai~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 1152 (1637)
|....++..+|..|..+|+|++|+..|.++ ++ ..|+ ...++..+|.++...|++++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------------------l~----~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANG-------------------VK----QFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HH----HCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HH----hCCC-chHHHHHHHHHHHHcCCHHH
Confidence 677889999999999999999999987663 11 1333 26789999999999999999
Q ss_pred HHHHHHHc
Q psy12802 1153 AEKYYLDC 1160 (1637)
Q Consensus 1153 A~~~y~~a 1160 (1637)
|+.+|.++
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999998
No 490
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.28 E-value=0.053 Score=61.51 Aligned_cols=216 Identities=9% Similarity=-0.042 Sum_probs=130.6
Q ss_pred CCeEEEEEcCCCCCCceeEeeccCCCCCEEEEEEcCCCC--EEEEeCCCcEEEEEcCCCce--eeecccCCcEEEEEEec
Q psy12802 67 DNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNV 142 (1637)
Q Consensus 67 d~~i~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~ 142 (1637)
...|+..++.........+.. ....+..+.|.+.+. +++-...+.|..+++.++.. ..+.........+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEEec---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 567888888764212222211 223567899998655 45556678899999987743 22333334567899998
Q ss_pred CCCeE-EEEeCCCcEEEEEecCCCCcccccccccc-cCCCCcEEEEecC--CeEEEEe--cCCeEEEEeCCCceeEEeec
Q psy12802 143 RGAGV-LSGHADGSIVRYYVTEDASNFDQQQGRVV-QHPVPPYALSWPA--GYILAAG--SDRIVTIYESDGRVHRIFDY 216 (1637)
Q Consensus 143 ~g~~l-~s~~~dg~i~iwd~~~~~~g~~~~~~~~~-~~~~~v~~~~~~~--~~l~~~~--~d~~i~iwd~~~~~~~~~~~ 216 (1637)
.+..| ++-...+.|.++++.. .....+. .....+..++++| +.++.+. ..+.|...+.+|.....+-.
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG------~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDG------SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CCCeEEEEECCCCEEEEEECCC------CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 55544 5545678899998764 2222222 4456678999987 4555544 35788888887766555432
Q ss_pred cCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCCCCccccCCCcccCCCcceeEEEEcCCCCEEEEEecCCcEE
Q psy12802 217 TAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 294 (1637)
Q Consensus 217 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~v~ 294 (1637)
. .-.....++++|++..|..+.... |..++++..... ............+++.. +..+.+-...+.|.
T Consensus 163 ~----~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-----~~~~~~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 163 S----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-----AVVKGSLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp S----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSCCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred C----CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-----EEecCCCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 1 223578999999888777776554 888887643221 00011233456666642 33444445567777
Q ss_pred EEEcccc
Q psy12802 295 LFESVLK 301 (1637)
Q Consensus 295 iwd~~~~ 301 (1637)
.++..++
T Consensus 233 ~~~~~~G 239 (318)
T 3sov_A 233 ACNKYTG 239 (318)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 7776544
No 491
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.21 E-value=0.0031 Score=74.82 Aligned_cols=96 Identities=8% Similarity=-0.083 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhCC
Q psy12802 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ--DIAQHVKTLAQHFKTVKD 1032 (1637)
Q Consensus 955 ~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~ 1032 (1637)
+....+..++|.+|..+|+|++|+.+|+++ +.+.++.-.++ .....+++||..|..+|+
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-------------------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~ 386 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRT-------------------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGM 386 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHH-------------------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCC
Confidence 455678889999999999999999998764 33444433332 255569999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhh--cChhhHHHHHHHHHHHHHH
Q psy12802 1033 YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQH--LNVGEIKATFIQKCKQLEE 1088 (1637)
Q Consensus 1033 ~~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~a~~~~~ 1088 (1637)
+++|+.+|+++ +++.+.. .+.|....++.+++.....
T Consensus 387 ~~eA~~~~~~A-------------------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 387 FPQAMKNLRLA-------------------FDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHH-------------------HHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------HHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999998775 4444443 2346667777777666543
No 492
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.19 E-value=0.11 Score=58.94 Aligned_cols=177 Identities=10% Similarity=0.069 Sum_probs=107.0
Q ss_pred eCCCcEEEEEcCCCce--eeecccCCcEEEEEEecCCCeEE-EEeCCCcEEEEEecCCCCcccccccccccCCCCcEEEE
Q psy12802 110 QSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGVL-SGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALS 186 (1637)
Q Consensus 110 ~~d~~v~vwd~~~~~~--~~~~~~~~~v~~l~~s~~g~~l~-s~~~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~ 186 (1637)
+....|+.+++.+... ..+......+..++|++.+..|. +-...+.|..+++.... .....+...-..+..++
T Consensus 10 ~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~----~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE----SVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp ECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS----CCCEEEEECCSCCCEEE
T ss_pred EccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC----ceEEEEcCCCCCccEEE
Confidence 3456799999987742 22223334577899999655554 44457889888876531 11112222234566677
Q ss_pred ecC--Ce-EEEEecCCeEEEEeCCCceeEEeeccCCCCCCccEEEEEECCCCCEEEEEecC--c-EEEEEeCCCCCcccc
Q psy12802 187 WPA--GY-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N-IKLFAWSPSKSVWEE 260 (1637)
Q Consensus 187 ~~~--~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--~-i~i~~~~~~~~~~~~ 260 (1637)
+++ +. +++-...+.|.+++.+|.....+.. ........++++|.+..|...... . |..++.+.....
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--- 158 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--- 158 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE---
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE---
Confidence 754 44 4445567899999977766555432 123457899999987776666532 3 666665532211
Q ss_pred CCCcccCCCcceeEEEEcCCCCEEEEE-ecCCcEEEEEcc
Q psy12802 261 QPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV 299 (1637)
Q Consensus 261 ~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~v~iwd~~ 299 (1637)
............++|+|++..|..+ +..+.|..+|+.
T Consensus 159 --~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 159 --IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp --EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred --EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 0111223467899999977766655 456778888874
No 493
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.094 Score=62.33 Aligned_cols=155 Identities=9% Similarity=0.033 Sum_probs=93.6
Q ss_pred CEEEEEEcCC-CC-EEEE-eCCCcEEEEEcCCCceeeeccc----CCcEEEEEE-------ecCCCeEEEEeCCC-----
Q psy12802 94 PVTTMVWLAD-GP-IIYG-QSDGKIKAAHVKANKTQTLYAS----NSFVVALCL-------NVRGAGVLSGHADG----- 154 (1637)
Q Consensus 94 ~v~~v~~s~~-~~-l~~~-~~d~~v~vwd~~~~~~~~~~~~----~~~v~~l~~-------s~~g~~l~s~~~dg----- 154 (1637)
....|+|+|. +. |+++ ...+.|++.|.+++...++... ......++| +++|..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999994 44 4444 4446799999999888555432 235899999 99999777776644
Q ss_pred --cEEEEEecCCCCcccc-c-ccccccCCCCcEEEEecC--Ce-EEEEecCCeEEEEe-C-------CCce---------
Q psy12802 155 --SIVRYYVTEDASNFDQ-Q-QGRVVQHPVPPYALSWPA--GY-ILAAGSDRIVTIYE-S-------DGRV--------- 210 (1637)
Q Consensus 155 --~i~iwd~~~~~~g~~~-~-~~~~~~~~~~v~~~~~~~--~~-l~~~~~d~~i~iwd-~-------~~~~--------- 210 (1637)
.|.+++....+ .|.. . ...+.. -..+..++.+| +. +++-..++.|..+| . ++..
T Consensus 220 ~~~V~~i~r~~~G-~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADG-TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTS-CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCC-ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 25555533211 1100 0 012222 23455777777 34 44555678899999 4 4443
Q ss_pred --eEE-eeccCCCCCCccEEEEEECCCCCEEEEEecCc--EEEEEeCCC
Q psy12802 211 --HRI-FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPS 254 (1637)
Q Consensus 211 --~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--i~i~~~~~~ 254 (1637)
... +.. +.......++|+|+|+.|.++.... |+.++.+..
T Consensus 298 g~~~~l~~~----~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 298 NTFKQLFTI----ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp TTEEEEEEC----SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred cccceeEec----CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 122 221 1233467899999999766665444 877776543
No 494
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.17 E-value=0.022 Score=64.80 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=104.0
Q ss_pred eeEEEEcCCCCEEEEEe------------CCCeEEEEEcCCC--C-------------cccceEEEEECC--CCC-eEEE
Q psy12802 14 LQDDVFNLDIVRLRSEG------------NVAGIWAWRGQNG--R-------------KSYVVKGLAFSP--DST-KLAV 63 (1637)
Q Consensus 14 i~~~~~spdg~~la~~~------------~d~~i~vwd~~~~--~-------------h~~~V~~~~~sp--d~~-~la~ 63 (1637)
.-++++.|+|..+++++ .+|.|+++|.++. + ......++.+.+ +++ +|.+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34677889886666652 6889999998732 1 123566777766 354 4555
Q ss_pred EE---CCCeEEEEEcCCCCCCceeEeeccCC-CCCEEEEEEcCCCC-EEEEe-----------------CCCcEEEEEcC
Q psy12802 64 AQ---SDNIIFIYKLGDDWGDKKVICNKFIQ-QCPVTTMVWLADGP-IIYGQ-----------------SDGKIKAAHVK 121 (1637)
Q Consensus 64 ~~---~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~-l~~~~-----------------~d~~v~vwd~~ 121 (1637)
+. .+.+|.+|++..+......+....+. -...+.+.+.++|. +++.. ..|.|..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 53 25678898887653333333333222 35678999999999 45432 1234444444
Q ss_pred CCceeeecccCCcEEEEEEecCCCeEEEEe-CCCcEEEEEecCCCCcccccccccccCCCCcEEEEecC
Q psy12802 122 ANKTQTLYASNSFVVALCLNVRGAGVLSGH-ADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPA 189 (1637)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 189 (1637)
++...+...-...+.++||||++.+.++. ..+.|..|++...+.- .....+ ...+.+-.++.++
T Consensus 211 -~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l--~~~~~~-~~~g~PDGi~vD~ 275 (355)
T 3sre_A 211 -NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL--TPLRVL-SFDTLVDNISVDP 275 (355)
T ss_dssp -TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE--EEEEEE-ECSSEEEEEEECT
T ss_pred -CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE--ecCEEE-eCCCCCceEEEeC
Confidence 45544444456789999999998877765 4789999998743210 111222 2345556666654
No 495
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.16 E-value=0.079 Score=61.18 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=119.9
Q ss_pred ceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC-------------cccceEEEEECCC---CCeEEEEE-C-------C
Q psy12802 13 VLQDDVFNLDIV-RLRSEGNVAGIWAWRGQNGR-------------KSYVVKGLAFSPD---STKLAVAQ-S-------D 67 (1637)
Q Consensus 13 ~i~~~~~spdg~-~la~~~~d~~i~vwd~~~~~-------------h~~~V~~~~~spd---~~~la~~~-~-------d 67 (1637)
....++|.|||+ ++++ ...|.|++++..... .......|+|+|| +.+|.++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 6555 457899999853211 1235689999996 55555443 2 2
Q ss_pred CeEEEEEcCCCCC---CceeEeeccC----CCCCEEEEEEcCCCC-EEEEeC-------------CCcEEEEEcCCC---
Q psy12802 68 NIIFIYKLGDDWG---DKKVICNKFI----QQCPVTTMVWLADGP-IIYGQS-------------DGKIKAAHVKAN--- 123 (1637)
Q Consensus 68 ~~i~iw~~~~~~~---~~~~~~~~~~----~~~~v~~v~~s~~~~-l~~~~~-------------d~~v~vwd~~~~--- 123 (1637)
..|..|++..+.. ..+.+....+ .......+.|.|||. +++.+. .|.|.-++.++.
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 3566666653211 1122221111 112235799999999 444332 246777777653
Q ss_pred ----------ceeee-cccCCcEEEEEEec-CCCeEEEEeC-CCcEEEEEecCCC-Ccccccc-----------------
Q psy12802 124 ----------KTQTL-YASNSFVVALCLNV-RGAGVLSGHA-DGSIVRYYVTEDA-SNFDQQQ----------------- 172 (1637)
Q Consensus 124 ----------~~~~~-~~~~~~v~~l~~s~-~g~~l~s~~~-dg~i~iwd~~~~~-~g~~~~~----------------- 172 (1637)
....+ .++ .....++|+| +|.++++-.. ++.=.+.-+.... -||..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 11111 233 3478899999 5655554332 2111222222110 1111100
Q ss_pred --------cccccCCCCcEEEEecC--------C-eEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCccEEEEEECCC
Q psy12802 173 --------GRVVQHPVPPYALSWPA--------G-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 234 (1637)
Q Consensus 173 --------~~~~~~~~~v~~~~~~~--------~-~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 234 (1637)
..+ .+...+..+.|.+ + .+++....+.|...+ ..++.......-. .....+..+++.||
T Consensus 257 ~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 257 VAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT--DRGQRIRDVRTGPD 333 (353)
T ss_dssp CTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG--GGCCCEEEEEECTT
T ss_pred CCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc--CCCCceeEEEECCC
Confidence 001 1223456666632 3 344444566776666 3333332221110 12346899999999
Q ss_pred CCEEEEEecCcEEEEEe
Q psy12802 235 GQAVVVGSYDNIKLFAW 251 (1637)
Q Consensus 235 g~~l~~~~~d~i~i~~~ 251 (1637)
|.+.++.....=+||.+
T Consensus 334 G~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 334 GYLYVLTDESSGELLKV 350 (353)
T ss_dssp SCEEEEECSTTEEEEEE
T ss_pred CcEEEEEeCCCCEEEEE
Confidence 99766543222244443
No 496
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.16 E-value=0.015 Score=64.25 Aligned_cols=151 Identities=9% Similarity=0.064 Sum_probs=103.5
Q ss_pred CCceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc--------------ccceEEEEE---CCCCCeEEEEE-------
Q psy12802 11 SNVLQDDVFNLDIVRLRSEG-NVAGIWAWRGQNGRK--------------SYVVKGLAF---SPDSTKLAVAQ------- 65 (1637)
Q Consensus 11 ~~~i~~~~~spdg~~la~~~-~d~~i~vwd~~~~~h--------------~~~V~~~~~---spd~~~la~~~------- 65 (1637)
....-++.|++....+..++ ..++|..|+...+.+ ...+.++.| .|+++.+++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34445788988555555554 689999999875431 114689999 68877776543
Q ss_pred ------CCCeEEEEEcC---CCCCCceeEeeccC-----------CCCCEEEEEEcCCCC-EEEEeCC-CcEEEEEcCCC
Q psy12802 66 ------SDNIIFIYKLG---DDWGDKKVICNKFI-----------QQCPVTTMVWLADGP-IIYGQSD-GKIKAAHVKAN 123 (1637)
Q Consensus 66 ------~d~~i~iw~~~---~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~-l~~~~~d-~~v~vwd~~~~ 123 (1637)
.++.|..||+. ++.. .....+.. -......++..++|+ .++++.. +.|...+..+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~--~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKP--VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCC--SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCCCE--EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26779999988 5411 11112111 113478999999999 8888888 88888887766
Q ss_pred ceeeec------ccCCcEEEEEEecCCCeEEEEeCCCcEEEEEecC
Q psy12802 124 KTQTLY------ASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTE 163 (1637)
Q Consensus 124 ~~~~~~------~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 163 (1637)
....+. ......+.|+++|+|..|++....|.+..+|+..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 443222 1122367999999999998888899999999874
No 497
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00013 Score=68.39 Aligned_cols=99 Identities=11% Similarity=-0.012 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy12802 959 ALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEK 1038 (1637)
Q Consensus 959 ~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 1038 (1637)
..+..+|..+...|++++|+.+|.++... .|+ .+.++..+|.+|...|++++|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~ 59 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA------------------------QPQ-NPVGYSNKAMALIKLGEYTQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------CCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 34567888899999999999888765332 454 67789999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12802 1039 IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLI 1101 (1637)
Q Consensus 1039 ~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 1101 (1637)
.|.++..... ...+......++..+|..+...|++++|+..|.+
T Consensus 60 ~~~~al~~~p-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 60 MCQQGLRYTS-------------------TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHTSCS-------------------STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhCC-------------------CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9988754321 0000111256777888888888887777655443
No 498
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.13 E-value=0.35 Score=52.68 Aligned_cols=222 Identities=9% Similarity=0.065 Sum_probs=140.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCC------cccceEEEEECCCCCeEEEEECCCeEEEEEcCCCCCCceeEeecc
Q psy12802 16 DDVFNLDIVRLRSEGNVAGIWAWRGQNGR------KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKF 89 (1637)
Q Consensus 16 ~~~~spdg~~la~~~~d~~i~vwd~~~~~------h~~~V~~~~~spd~~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~ 89 (1637)
+...+|..+.+|.-. ..++.++|+++.. ....|.--.|-.+. .|+..+ +..|+-|++.......++.....
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 456789998888776 5689999999876 25677788886544 555555 56899999976433333333211
Q ss_pred C-CCCCEEEEEEcCCCC--EEEEe------CCCcEEEEEcCCCceeeecccCCcEEEEEEecC---CCeEEEEeC---CC
Q psy12802 90 I-QQCPVTTMVWLADGP--IIYGQ------SDGKIKAAHVKANKTQTLYASNSFVVALCLNVR---GAGVLSGHA---DG 154 (1637)
Q Consensus 90 ~-~~~~v~~v~~s~~~~--l~~~~------~d~~v~vwd~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~s~~~---dg 154 (1637)
. ....|..-.-+++.+ +++|- -.|.+.+|+.+.+..+.+.+|......+....+ .+.|+.+.. .+
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 227 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 227 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 1 246677778888888 34432 247889999999988999999765544333221 123444443 25
Q ss_pred cEEEEEecCCCCcccccccc----cc---cCCCCcEEEEecC--CeEEEEecCCeEEEEe-CCCceeEEeeccCCCCCCc
Q psy12802 155 SIVRYYVTEDASNFDQQQGR----VV---QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER 224 (1637)
Q Consensus 155 ~i~iwd~~~~~~g~~~~~~~----~~---~~~~~v~~~~~~~--~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~ 224 (1637)
.+++-++...+.|-....++ +. ...+.+.++..|+ +.+..-+.-|.|++|| .+|.++..-..+.+
T Consensus 228 kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d----- 302 (365)
T 2xzh_A 228 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE----- 302 (365)
T ss_dssp EEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----
T ss_pred EEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC-----
Confidence 88999986542110011111 11 2356677888877 5788889999999999 89999877664433
Q ss_pred cEEEEEECCCCCEEEEEecCc
Q psy12802 225 EFTVACSSPSGQAVVVGSYDN 245 (1637)
Q Consensus 225 ~i~~~~~sp~g~~l~~~~~d~ 245 (1637)
.|-..+.+++..-++.....|
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~G 323 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKG 323 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTC
T ss_pred ceEEecccCCCCcEEEEcCCC
Confidence 454444444433344444444
No 499
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.10 E-value=0.001 Score=59.26 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHhcccHHHHHHHHHHhCChHHHHHHHHHccCHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCH
Q psy12802 954 PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDY 1033 (1637)
Q Consensus 954 ~~~~~~l~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~~ 1033 (1637)
|+.....+..+|..+...|++++|+.+|.++... .|+ .+.++..+|.++...|++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------------------~~~-~~~~~~~l~~~~~~~~~~ 59 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------------DPN-NAEAWYNLGNAYYKQGDY 59 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTT-CHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------------CCC-CHHHHHHHHHHHHHHhhH
Confidence 3444556677888888888888888888665321 344 567888899999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHcC
Q psy12802 1034 KTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEEN 1090 (1637)
Q Consensus 1034 ~~A~~~~~~~~~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~a~~~~~~g 1090 (1637)
++|+..|.++.... |....++..+|.++..+|
T Consensus 60 ~~A~~~~~~a~~~~-------------------------p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 60 DEAIEYYQKALELD-------------------------PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC-------------------------CCCHHHHHHHHHHHHhcC
Confidence 98888887763321 334566777777776554
No 500
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=97.06 E-value=0.039 Score=63.39 Aligned_cols=233 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHhCChHHHHHHHHHcCChHHHHHHHhhhCCCCh-hHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCH
Q psy12802 1319 ENFSKFETLLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKL-PLLQQEYEKEINTNISKDIHSLITQARQWEQNGEF 1397 (1637)
Q Consensus 1319 ~~~~~A~~~~~~a~~~~~a~~~y~~~~~~~~Al~~~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 1397 (1637)
...++.+.-..-.|+++.|+..+.+.++|.+|+-++...-|... ...+.+|-+... .+...+..+..+. .||+
T Consensus 144 ~~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~----~~~~~~rll~~iv--~~n~ 217 (399)
T 2pm7_A 144 GNIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYG----SKSSLSRILYSIS--KREV 217 (399)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT----TSCHHHHHHHHHH--TTCC
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcc----cCchHHHHHHHHH--ccCH
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHhccCcc--chhhhhhhhhhhhhhccCHHHHHHHHhcccchHHHHHHHHh-
Q psy12802 1398 YNAVECYLKIKNVDVNLMVKILNEVTQLTLKYLNHD--QSYKILPSLVPKLMEFKQYDLAVRVYLNIDMVKEAVDIFIY- 1474 (1637)
Q Consensus 1398 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~A~~~y~~~~~~~~a~~~~~~- 1474 (1637)
...+....-.. |++++.+.-.|.+++ .-......||.+|+..|+.+.|.=+|.-+|.+...+.+..+
T Consensus 218 ~d~V~~~~l~~----------WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~ 287 (399)
T 2pm7_A 218 DDLVENLDVSQ----------WKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSE 287 (399)
T ss_dssp HHHHHHBCGGG----------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhcCChhh----------HHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHh
Q ss_pred ccchHHHHHHHHhhCcchHHHHHHHHHHHHHhcCCCccccccCHHHHHHHHHHcccHHHHHHHHHhhChhhHHHHHHHHH
Q psy12802 1475 TQNWNKARKLCAELKPEYLSYVENQYKEWLKKNGDADMLSEIDINTALDMLMKQGQWNQCLDKAKNINTNLLHKYMALYA 1554 (1637)
Q Consensus 1475 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~a~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~ 1554 (1637)
...-+.+. .+..+..-..-...+.+ +.+=+.+|.+ ++..........|.+++..|+
T Consensus 288 ~~~~~~~~---~~~~~s~~~~~~~~Lqe---------------~iEkv~vl~~------a~~~~~~~~~~~l~~~~~eYA 343 (399)
T 2pm7_A 288 FPDLEDKL---KKDNKTIYEAHSECMTE---------------FIERFTVFSN------FINGSSTINNEQLIAKFLEFI 343 (399)
T ss_dssp HHHHHHHH---HHTTCCHHHHHHHHHHH---------------HHHHHHHHHT------TSCC---CCCHHHHHHHHHHH
T ss_pred cchhhhcc---ccccCCcccccHHHHHH---------------HHHHHHHHHH------HHhcCCCcCcHHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q psy12802 1555 MHLIKNKEYAQLTQLFNEYGTPNIPQFYNIYKQTAYCI 1592 (1637)
Q Consensus 1555 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 1592 (1637)
..|..+|..+.|++.+-..+ ...|+--....||....
T Consensus 344 ~lLA~qG~l~~A~~yL~~lp-~~~~~~~~lr~Rl~~a~ 380 (399)
T 2pm7_A 344 NLTTSTGNFELATEFLNSLP-SDNEEVKTEKARVLIAS 380 (399)
T ss_dssp HHHHTTTCHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhc
Done!