RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12802
(1637 letters)
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 83.0 bits (204), Expect = 5e-16
Identities = 47/373 (12%), Positives = 112/373 (30%), Gaps = 50/373 (13%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN-KFIQQCPVTTMVWLADGPII 107
AF LA+A + I +G ++V K + + M ++ ++
Sbjct: 20 PIAAAFDFTQNLLAIATVTGEVHI------YGQQQVEVVIKLEDRSAIKEMRFVKGIYLV 73
Query: 108 YGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDAS- 166
+ + + + K T + ++ + +L G +GS++ Y + D
Sbjct: 74 VINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133
Query: 167 -----NFDQQQGRVVQHPVPPYALSW--PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTA 218
N + P ++ W + + + Y + + + F Y
Sbjct: 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYEL 193
Query: 219 PHY-----------KEREFTV--ACSSPSGQAVVVGSYDNIKLFAWSPSK---------- 255
P + ++R V + P+ ++ DN L W +
Sbjct: 194 PPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN-SLVFWDANSGHMIMARTVF 252
Query: 256 -----SVWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFESVLKRTIWKGK 308
+ + N IS + W + + + S+ ++ I G
Sbjct: 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312
Query: 309 FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPD-TLLLGD 367
++ + + + + + I I ++ + A + L+L
Sbjct: 313 TPRYSITSYEGMKNYYA--NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370
Query: 368 LHRNLLSEVLWPD 380
L + +L+P
Sbjct: 371 LGNGEIETMLYPS 383
Score = 40.2 bits (93), Expect = 0.006
Identities = 28/334 (8%), Positives = 83/334 (24%), Gaps = 79/334 (23%)
Query: 30 GNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKF 89
G ++ + R V++ + P+S + DN + + D +I +
Sbjct: 196 FAPGGDFSEKTNEKRTPKVIQ-SLYHPNSLHIITIHEDNSLVFW----DANSGHMIMART 250
Query: 90 IQQ------------------CPVTTMVWLA----------------------------- 102
+ + ++ + W+
Sbjct: 251 VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310
Query: 103 DGPIIYGQSDGKIKAAHVKANKTQTL--YASNSFVVALCLNVRGAGVLSGHADGSIVRYY 160
Y + + + K + +N +V + R + +G + ++
Sbjct: 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370
Query: 161 VTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPH 220
+ + + + L+ T + +
Sbjct: 371 LGNGEIETMLYPSGIFTDKASLFPQN------LSWLRPLATTSMAASVPNKLWLGALSAA 424
Query: 221 YKEREF--------TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI----- 266
+ + G A + G + +++ + S ++ + +
Sbjct: 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI--YDASHGDIQDNASFEVNLSRT 482
Query: 267 ---PNLYTISALSWKRDGSRIACGGLCGSVELFE 297
+ +S+ + +A G V LF+
Sbjct: 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516
Score = 39.9 bits (92), Expect = 0.008
Identities = 44/415 (10%), Positives = 111/415 (26%), Gaps = 70/415 (16%)
Query: 36 WAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN-------- 87
+ + + ++P + + + Y L ++ + I
Sbjct: 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGG 200
Query: 88 ------KFIQQCPVTTMVWLADGPIIY-GQSDGKIKAAHVKANK---TQTLYASNSFVVA 137
+ V ++ + I D + + +T++ + V
Sbjct: 201 DFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260
Query: 138 LCLNVRGAG----------VLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW 187
+ + + + + + + +Q + P Y+++
Sbjct: 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT- 319
Query: 188 PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIK 247
S + Y ++ + +IF + P G ++
Sbjct: 320 ---------SYEGMKNYYANPKQMKIFPLP-TNVPIVNI---LPIPRQSPYFAGCHNPGL 366
Query: 248 LFAWSPSKSV--WEEQPNK-TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI 304
+ + + T LSW R + + + + +
Sbjct: 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA----------ASVPNKL 416
Query: 305 WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV----ARTP 360
W G +S +Q L G + + L ++YG I G+ V A
Sbjct: 417 WLGA-----LSAAQNKDYLLKGGVRTKRQKLPAEYG----TAFITGHSNGSVRIYDASHG 467
Query: 361 DTLLLGDLHRNLLSEVLWPDSGRNEKFYF--DNVTVCLVFNAGELSIIEYGNNEI 413
D NL + +K F + + + + G++ + +Y N+
Sbjct: 468 DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQF 522
Score = 32.9 bits (74), Expect = 1.0
Identities = 9/67 (13%), Positives = 23/67 (34%)
Query: 42 NGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWL 101
N K V ++F+ ++ +LAV+ + ++K + + L
Sbjct: 484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543
Query: 102 ADGPIIY 108
+ +
Sbjct: 544 NNTNGVL 550
Score = 32.5 bits (73), Expect = 1.3
Identities = 22/223 (9%), Positives = 68/223 (30%), Gaps = 27/223 (12%)
Query: 270 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK----FEMIYVSPSQVLVKPLS 325
A ++ + +A + G V ++ + K + + + LV
Sbjct: 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLV---V 74
Query: 326 GESKG--------RGVILKSQYGYE-ITDVAIMGNDRYLVARTPD-TLLLGDLHRNLLSE 375
+K +L + + IT + + +++ + ++++ D+ R+ LS
Sbjct: 75 INAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134
Query: 376 VLWPDSGRNEKFYFDNVT--VCLVFNAGELSIIEYGNNE------ILTCVSIKLFAWS-- 425
+ ++ F ++ V + +N ++ + ++ + F +
Sbjct: 135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELP 194
Query: 426 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 468
P + + + + I S+
Sbjct: 195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 76.0 bits (187), Expect = 2e-14
Identities = 29/268 (10%), Positives = 73/268 (27%), Gaps = 25/268 (9%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--I 106
+ + P + L + D + +YK D + + P+ ++ + I
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKF-DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 107 IYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAG--VLSGHADGSI----VRYY 160
G G+I + + + +N + +C + +++ DG I R
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR-- 130
Query: 161 VTEDASNFDQQQGRVVQHPVP--PYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTA 218
+ V + + + ++ ++ V +
Sbjct: 131 -NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189
Query: 219 PHYKEREFTVACSSPSGQAVVVGSYDN---IKLFAWSPSKSVWEE--------QPNKTIP 267
K + VA + S D ++ F + K
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 268 NLYTISALSWKRDGSRIACGGLCGSVEL 295
Y ++++ + + G G +
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISC 277
Score = 30.6 bits (69), Expect = 4.6
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 40 GQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMV 99
++ +Y V + FSP L A SD II + + +K I N F + + +
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW----NLQTRKKIKN-FAKFNEDSVVK 299
Query: 100 WLADGPII-YGQSDGKIKAAHVKANKTQTLYASNSFVV 136
I+ SD K + ++T L AS+ +++
Sbjct: 300 IACSDNILCLATSDDTFK-TNAAIDQTIELNASSIYII 336
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 75.7 bits (187), Expect = 8e-14
Identities = 37/272 (13%), Positives = 82/272 (30%), Gaps = 35/272 (12%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
+ L L ++ I + ++ +T + ADG
Sbjct: 285 DQQLGIIWTKQALVSISANGFINF------VNPELGSIDQVRYGHNKAITALSSSADGKT 338
Query: 107 IY-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVT 162
++ ++G I + +N+ + + + +G + + D + V
Sbjct: 339 LFSADAEGHINSWDISTGISNRVFPDVHATM-ITGIKTTSKGD-LFTVSWDDHLKV--VP 394
Query: 163 EDASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY 221
S D + + P L+ G I A + + IY Y +
Sbjct: 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS--- 451
Query: 222 KEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD 280
+ S Q V VG D+ + + + S + KTI + I+++++ +
Sbjct: 452 -----SCVALSNDKQFVAVGGQDSKVHV--YKLSGA--SVSEVKTIVHPAEITSVAFSNN 502
Query: 281 GSRIACGGLCGSVELF-----ESVLKRTIWKG 307
G+ + V + + W
Sbjct: 503 GAFLVATDQSRKVIPYSVANNFELAHTNSWTF 534
Score = 68.8 bits (169), Expect = 1e-11
Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 22/252 (8%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI-QQCPVTTMVWLADGP-I 106
V GL +SPD TK+A A +D I I+ + KV + + + + +
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIW----NVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 107 IYGQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDA 165
+ ++G I + + Q Y N + AL + G + S A+G I + D
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW----DI 353
Query: 166 SNFDQQQGRVVQHPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKER 224
S + H + G + D + + + G A +
Sbjct: 354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413
Query: 225 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI 284
+A S G V Y +I + +S K +P Y S ++ D +
Sbjct: 414 PLGLAVS-ADGDIAVAACYKHIAI--YSHGKLT-------EVPISYNSSCVALSNDKQFV 463
Query: 285 ACGGLCGSVELF 296
A GG V ++
Sbjct: 464 AVGGQDSKVHVY 475
Score = 58.7 bits (143), Expect = 1e-08
Identities = 42/282 (14%), Positives = 80/282 (28%), Gaps = 64/282 (22%)
Query: 38 WRGQNGRKSYVVKG-------LAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI 90
+ G V G L+ S D L A ++ I W I N+
Sbjct: 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS------WDISTGISNRVF 362
Query: 91 QQ---CPVTTMVWLADGPIIYGQSDGKIK----AAHVKANKTQTLYASNSFVVALCLNVR 143
+T + + G + D +K + +S + L ++
Sbjct: 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422
Query: 144 GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTI 203
G ++ I Y + + + + ALS +A G
Sbjct: 423 GDIAVAA-CYKHIAIY-------SHGKLTEVPISYNSSCVALS-NDKQFVAVGGQ----- 468
Query: 204 YESDGRVHRIFDYTAPHYKEREFT--------VACSSPSGQAVVVGSYDN-IKLFAWSPS 254
D +V ++ + E + VA S +G +V +
Sbjct: 469 ---DSKV-HVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIP------ 517
Query: 255 KSVWEEQPNKTIPNLYT-------ISALSWKRDGSRIACGGL 289
+ N + + + ++ +SW D R+A G L
Sbjct: 518 ---YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Score = 56.1 bits (136), Expect = 9e-08
Identities = 48/254 (18%), Positives = 82/254 (32%), Gaps = 32/254 (12%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC-----PVTTMVWLAD 103
V + ++PD + A D I +Y D G K + + V + W D
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVD--GTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250
Query: 104 GPIIY-GQSDGKIKAAHVKANK-TQTLYASNSFVV-ALCLNVRGAGVLSGHADGSIVRYY 160
G I +D IK +V K +T+ L + ++S A+G I +
Sbjct: 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI-NF- 308
Query: 161 VTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS-DRIVTIYE-SDGRVHRI 213
+ + G + Q H ALS G L + + + ++ S G +R+
Sbjct: 309 -------VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361
Query: 214 FDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTIS 273
F H T ++ G V D++K+ S +
Sbjct: 362 F--PDVH--ATMITGIKTTSKGDLFTVSWDDHLKV--VPAGGSGVDSSKAVANKLSSQPL 415
Query: 274 ALSWKRDGSRIACG 287
L+ DG
Sbjct: 416 GLAVSADGDIAVAA 429
Score = 49.5 bits (119), Expect = 9e-06
Identities = 66/480 (13%), Positives = 140/480 (29%), Gaps = 99/480 (20%)
Query: 38 WRGQNGRK----SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ-- 91
+ S+ SP A + I+ D I I
Sbjct: 47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW----DTTQTTHILKTTIPVF 102
Query: 92 QCPVTTMVWLADGPIIYGQSDGKIKAAHV----KANKTQTLYASNSFVVALCLNVRGAGV 147
PV + W ++ I +G+ + HV L + ++
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162
Query: 148 L-SGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSW-PAGYILAAGS-DRIVTI 203
+ SG D ++ + + F + H +++ + P G + A+ D + +
Sbjct: 163 IISGSDDNTVAIF----EGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
Query: 204 YE-SDGRVHRIFDYTAPHYKEREFTV-ACS-SPSGQAVVVGSYDN-IKLFAWSPSKSVWE 259
Y DG +F+ + +V + SP G + S D IK+ W+ +
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI--WNVATL--- 271
Query: 260 EQPNKTIPNLYTIS----ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVS 315
+ KTIP I + W + G + +
Sbjct: 272 -KVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI---------NFVNPE------- 312
Query: 316 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV------------ARTPDTL 363
+ + G +K IT ++ + + L T +
Sbjct: 313 -LGSIDQVRYGHNKA------------ITALSSSADGKTLFSADAEGHINSWDISTGISN 359
Query: 364 L-LGDLHRNLLSEVLWPDSGRNEKFY---FDNVTVCLVFNAG----ELSIIEYGNNEILT 415
D+H +++ + G + +D+ + +V G + +
Sbjct: 360 RVFPDVHATMITGIKTTSKGD---LFTVSWDD-HLKVVPAGGSGVDSSKAVANKLSSQPL 415
Query: 416 CVSI----KLFAWSPSKSV--WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF 469
+++ + + K + + +P Y S ++ D +A GG V ++
Sbjct: 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475
Score = 48.3 bits (116), Expect = 2e-05
Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 60/243 (24%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
GLA S D +AVA ++
Sbjct: 414 PLGLAVSADGD-IAVAACYK---------------------------HIAIY-------- 437
Query: 109 GQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNF 168
S GK+ T+ + NS VAL + V G D + Y S
Sbjct: 438 --SHGKL---------TEVPISYNSSCVALSND--KQFVAVGGQDSKVHVY----KLSGA 480
Query: 169 DQQQGRVVQHPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREF 226
+ + + HP ++++ G L A R V Y + + +
Sbjct: 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 540
Query: 227 TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA 285
V+ SP + GS DN + + W+ +K K + +++++ W + + I
Sbjct: 541 CVSW-SPDNVRLATGSLDNSVIV--WNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIV 596
Query: 286 CGG 288
G
Sbjct: 597 SAG 599
Score = 46.8 bits (112), Expect = 6e-05
Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 24/185 (12%)
Query: 22 DIVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGD 81
+ + S G + + SY +A S D +AV D+ + +Y
Sbjct: 432 KHIAIYSHGKLTEVP--------ISYNSSCVALSNDKQFVAVGGQDSKVHVY----KLSG 479
Query: 82 KKVICNKFI-QQCPVTTMVWLADGPII-YGQSDGKIK----AAHVKANKTQTLYASNSFV 135
V K I +T++ + +G + K+ A + + T + + V
Sbjct: 480 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539
Query: 136 VALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALS-WPAGYIL 193
+ + + +G D S+ + + + + H + W +
Sbjct: 540 ACVSWSPDNVRLATGSLDNSV-IVW---NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI 595
Query: 194 AAGSD 198
+
Sbjct: 596 VSAGQ 600
Score = 45.7 bits (109), Expect = 1e-04
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI-QQCPVTTMVWLADGPII 107
+ +AFS + L + Y + + + N + V + W D +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVAN--NFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 108 Y-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI 156
G D + + A V + + ++S D +I
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 604
Score = 34.5 bits (80), Expect = 0.34
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 47/180 (26%)
Query: 128 LYASNSFVVALCL-NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALS 186
Y + + V + + ++ + + H+ T V S
Sbjct: 34 QYCNGTSVYTVPVGSLTDTEIYTEHSH------QTT------------VA-------KTS 68
Query: 187 WPAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN 245
P+GY A+G V I+++ H I T P + ++ + +
Sbjct: 69 -PSGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWD-SESKRIAAVGEGR 125
Query: 246 ---IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGS-RIACGGLCGSVELFE 297
+F + S L ++++ +K RI G +V +FE
Sbjct: 126 ERFGHVFLFDTGTSNGN---------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 2e-13
Identities = 101/668 (15%), Positives = 202/668 (30%), Gaps = 194/668 (29%)
Query: 837 NYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEP-- 894
++E E + +Y L+ + D + + K+ + + + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDA------FVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60
Query: 895 ----YLL------ENHDVVSQIVKGL-----------IKNESYIKAGQIYEFTNENEKAL 933
L + ++V + V+ + IK E + + + ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL- 119
Query: 934 ECYRKGKVYDKCIDLTRKINPKNVTALE--------EEW---------G----------D 966
Y +V+ K +++R + L + G
Sbjct: 120 --YNDNQVFAK-YNVSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 967 HLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQH 1026
+ ++ K ++ N ++ K QI T++ D + ++K
Sbjct: 174 YKVQCKMDFKI--FWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 1027 FKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNV--GEIKATFIQKCK 1084
+ K Y +C + ++ NV + F CK
Sbjct: 230 IQAELRRLLKSKPYENCLL---VLL-------------------NVQNAKAWNAFNLSCK 267
Query: 1085 QL------EEENKFKEAERLYLIIGE------PDLAISMFKNQRQYENMIKLVRNYHPDL 1132
L + + A ++ + PD S+ +Y + DL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRP------QDL 318
Query: 1133 ----LDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLN-LWEDAYR---IAL 1184
L T L+ E ++ + N KL + SLN L YR L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 1185 S------NGGQEAVEPVVY--LWAKSLGGDSA--VRLLNRLSLLESCISNACDTYQF-DF 1233
S + + ++ +W + D V L++ SL+E T
Sbjct: 379 SVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSI 431
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAE 1293
EL K KLE + + +++ +N +T F + + Y ++
Sbjct: 432 YLEL-----KVKLENEYALHRSIVD---HYNIPKT-FDSDDLIPPYLDQYFYS------- 475
Query: 1294 RIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDL-IIEKYKMNH---MWND 1349
H IG L E E + F + L D +E+ K+ H WN
Sbjct: 476 -----H----IGHHL---KNIE-HPERMTLFRMVFL-----DFRFLEQ-KIRHDSTAWNA 516
Query: 1350 ALRVCGEYVPSKLPLLQQ--EYEKEINTNISKD---IHSLITQARQWEQN---GEFYNAV 1401
S L LQQ Y+ I N K +++++ + E+N ++ + +
Sbjct: 517 --------SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 1402 ECYLKIKN 1409
L ++
Sbjct: 569 RIALMAED 576
Score = 71.8 bits (175), Expect = 2e-12
Identities = 92/665 (13%), Positives = 195/665 (29%), Gaps = 200/665 (30%)
Query: 1063 YAIAEQHLNVGEIKATFIQK------CKQLEEENK--FKEAERLYLIIGEPD-------- 1106
+ E +I + F CK +++ K + E + II D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRL 67
Query: 1107 LAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYK-QAEKYYLDCNEWKL 1165
+ K + + ++ ++L NYK + + +
Sbjct: 68 FWTLLSKQEEMVQKFVE-------EVLR-------------INYKFLMSPIKTEQRQPSM 107
Query: 1166 AIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNA 1225
+MY R L N Q ++AK ++RL + A
Sbjct: 108 MTRMYIE-------QRDRLYNDNQ--------VFAK--------YNVSRLQPYLK-LRQA 143
Query: 1226 CDTYQFDFAFELAKIGM----KSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAIS 1281
+ A + G+ K+ + V K + +
Sbjct: 144 --LLELRPAKNVLIDGVLGSGKTWVA------LDVCLSY--------------KVQCKMD 181
Query: 1282 MYIHNQDWENAERIANEHDPTSIGDILLN---QSKCEFENENFSKFETLLLRAHKVDLII 1338
I W N + N + P ++ ++L Q + + LR H + +
Sbjct: 182 FKIF---WLN---LKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAEL 234
Query: 1339 EKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISK-DIHS--LITQARQWEQNG 1395
+ + + + L V L + + ++ L+T R +Q
Sbjct: 235 RRLLKSKPYENCLLV-----------LLNVQNAKA---WNAFNLSCKILLT-TRF-KQVT 278
Query: 1396 EFYNAVECYLKIKNVDVNLMVKILN--EVTQLTLKYLNHD------QSYKILP---SLVP 1444
+F +A ++ ++ L EV L LKYL+ + P S++
Sbjct: 279 DFLSAA----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 1445 KLME-----FKQYDLAVRVYLNIDMVKEAVDIFIYTQNWNKARK---------------- 1483
+ + + + ++N D + ++ + + RK
Sbjct: 335 ESIRDGLATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 1484 --LC---AELKPEYLSYVENQY--KEWLKKNGDA----------DMLSEIDINTAL-DML 1525
L ++ + V N+ ++K ++ +++ AL +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 1526 MKQGQWNQCLDKAKNINTNLLHKYMALYAMHLIKNKEYAQLTQLFNEYGTPNIPQFYN-- 1583
+ + D ++ L +Y + H +KN E+ + LF + F +
Sbjct: 450 VDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMV--FLDFR 501
Query: 1584 ------IYKQTAYCILNDSNENVNLIISLRNMLFNVIKNQNNNEEIDKQYLQ-----TNS 1632
+ TA N S +N + L+ + N E + L +
Sbjct: 502 FLEQKIRHDSTA---WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 1633 LLHSK 1637
L+ SK
Sbjct: 559 LICSK 563
Score = 68.0 bits (165), Expect = 3e-11
Identities = 87/644 (13%), Positives = 187/644 (29%), Gaps = 177/644 (27%)
Query: 743 HNLH----VAEICYAALGDISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNK 798
H+ H E Y DI + F + + ++ D + +IL+K
Sbjct: 3 HHHHMDFETGEHQYQ-YKDI-LSVFEDAFVDNFDC----KDVQDMPK--------SILSK 48
Query: 799 QFKVAEGIYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEY---NELKKKYIKWLTDT- 854
+ E + I + D + L + + L+ Y K+L
Sbjct: 49 E---------EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPI 98
Query: 855 RQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQN-EPYLLENHDVVSQIVKGL--I 911
+ E + Q ++ + + N Q Y + ++ + L +
Sbjct: 99 KTEQR-----------QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 912 KNESYI---------K---AGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTA 959
+ + K A + ++C K++ ++L +P+ V
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVC-----LSYKVQCKMDFKIF--WLNLKNCNSPETV-- 198
Query: 960 LEEEWGDHLIENKQYNAAINHY------IEAGKNNKALDTSIKAKQWKKAVQILQ----- 1008
LE + + + +H I + + L +K+K ++ + +L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNA 256
Query: 1009 -------------VITNKQDIAQHVKTLAQHFKTVKDYKT------AEKIYSH------- 1042
+ T + + + ++ + + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 1043 ------CDMH--------EQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKC-KQLE 1087
+ E I D W +H+N ++ T I+ LE
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNW--------KHVNCDKLT-TIIESSLNVLE 367
Query: 1088 EENKFKEAERLY--LIIGEPDLAI-----SMFKNQRQYEN----MIKLVR----NYHPDL 1132
E +++ L + P I S+ + + KL + P
Sbjct: 368 PA----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 1133 LDTTLLHLAQE-CEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAY---RIA--LSN 1186
++ + E + +N + +D + + D Y I L N
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 1187 GGQE---AVEPVVYL---W--AK-------SLGGDSAVRLLNRLSLLESCISNACDTYQ- 1230
+ +V+L + K S + L +L + I + Y+
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 1231 -----FDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQ 1269
DF ++ + + SK ++ + AL+ ED F EA Q
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDL-LRIALMAEDEAIFEEAHKQ 586
Score = 52.2 bits (124), Expect = 1e-06
Identities = 93/683 (13%), Positives = 189/683 (27%), Gaps = 214/683 (31%)
Query: 331 RGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLL--GDLHRNLLSEVLWPDSGRNEKFY 388
+ ++ K EI + + + R TLL ++ + + EVL + F
Sbjct: 43 KSILSKE----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----FL 94
Query: 389 FDNV-TVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLYTISA 447
+ T + IE + ++F +V QP + A
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVF---AKYNVSRLQPYLKLRQ-----A 143
Query: 448 LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK----- 502
L R + G+ GS GK + + K
Sbjct: 144 LLELRPAKNVLIDGVLGS--------------GK---------TWVALDVCLSYKVQCKM 180
Query: 503 GRGVI-LKSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLN-----ERKQVHSQ 556
+ L + V M T + H +++L + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLK 239
Query: 557 QENKKLAYL-LD-----------------LHT---ICVIDLITNLPTLHINHDSKIDWLE 595
+ + L L L T V D ++ T HI+ D L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 596 LNETAHKLLYRDKKMRLTLLDIRTSEKHNILNYCTFVQWLPGSDVVVAQSRHNACVWYNI 655
+E +L +++L D
Sbjct: 300 PDEV------------KSL----------------LLKYL---DCRPQDLPREVL----- 323
Query: 656 DTPDRITQFPVRGDIIDVIRENGQSEILTQDGNHQLGYELDESLIEFGTAVHDSDFGKAI 715
T P + +I E+ + + T D + + ++IE V + +
Sbjct: 324 ------TTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK- 373
Query: 716 LYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWS 775
+ L + A I T + + +W
Sbjct: 374 -MFDRLSVFPPSA----------------------------HIPT-----ILLSL--IWF 397
Query: 776 KENNIGDPLQCPELWARMAILNKQFKVAE----GIYLENN-------EIHKA-IDMY--L 821
D + + +++ KQ K + IYLE +H++ +D Y
Sbjct: 398 DVIKS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 822 KLYKWEDALSLAETNNYEYNELKKKYIKW-LTDTRQEDKAGE---LYEKEGDHQTALNY- 876
K + +D L + Y Y+ +I L + ++ ++ L++
Sbjct: 457 KTFDSDD-LIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVF---------LDFR 501
Query: 877 YLKA---------NFTSKACNLVQN----EPYLLENHDVVSQIVKGLIKNESYIKAGQ-- 921
+L+ N + N +Q +PY+ +N ++V ++ K +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENL 559
Query: 922 -IYEFTNENEKALECYRKGKVYD 943
++T+ AL +++
Sbjct: 560 ICSKYTDLLRIALM-AEDEAIFE 581
Score = 50.6 bits (120), Expect = 5e-06
Identities = 96/717 (13%), Positives = 200/717 (27%), Gaps = 190/717 (26%)
Query: 159 YYVTEDASNFDQQQGRVVQHPVPPYA--------LSWPAGYILAAGSDRIVTIYESDGRV 210
+++ + Q ++ + P + D I+ ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 211 HRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNL 269
R+F S V I + + S + + + P++
Sbjct: 65 LRLFW------------TLLSKQEEMVQKFVEEVLRIN-YKFLMSP--IKTEQRQ--PSM 107
Query: 270 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK 329
T + +RD L ++F K + + + P L + L
Sbjct: 108 MTRMYIE-QRD-------RLYNDNQVFA---KYNVSRLQ-------PYLKLRQALLELRP 149
Query: 330 GRGVILKSQYGYEITDVAIMG--NDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKF 387
+ V++ G + ++ D L + + ++ W +
Sbjct: 150 AKNVLI---DG--------VLGSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNS- 194
Query: 388 YFDNV-----TVCLVFNAGELSIIEYGNNEILTCVSIK-----LFAWSPSKS-------V 430
+ V + + S ++ +N L SI+ L P ++ V
Sbjct: 195 -PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 431 WEEQPNKTIPNLYTISA--LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVS 488
N N + +S L R + + T+ + + + +
Sbjct: 254 Q----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 489 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLTEFMNPHLISVRLN 548
+ L E S I D D + + + + + +I LN
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNW---KHVNCDKLT-TIIESSLN 364
Query: 549 ERKQVHSQQENKKLAYLLDLHTICVIDLITNLP--TLHI---NHDSKIDWLELNETAHK- 602
+ ++ +L+ ++P L + + + +N+
Sbjct: 365 VLEPAEYRKMFDRLSVFPP-------S--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 603 LLYRD-KKMRLTLLDIRTSEKHNILNYCTFVQWLPGSDVVVAQSRHNACV-WYNIDTPDR 660
L+ + K+ +++ I K + N + H + V YNI
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENE---------------YALHRSIVDHYNI----- 455
Query: 661 ITQFPVRGDIIDVIRENGQSEILTQDG---NHQLGY-----ELDESLIEFGTAVHDSDFG 712
F I + D +H +G+ E E + F D F
Sbjct: 456 PKTFDSDDLIPPYL-----------DQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRF- 502
Query: 713 KAILYLESLGINKKEAEGM-WQNLAEVAIQLHNL-----HVAEIC--YAAL-GDISTTHF 763
LE K + W + L L ++ + Y L I F
Sbjct: 503 -----LE----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDF 551
Query: 764 LRETIKIGE--VWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAID 818
L KI E + SK ++ L+ +A++ + E I+ E HK +
Sbjct: 552 LP---KIEENLICSKYTDL---LR-------IALMAED----EAIF---EEAHKQVQ 588
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 71.8 bits (176), Expect = 1e-12
Identities = 85/537 (15%), Positives = 156/537 (29%), Gaps = 124/537 (23%)
Query: 807 YLENNEIHKAIDMYLKLYKW----EDALSLAE----TNNYEY-NELKKKYIKWLTDTRQE 857
L + A + K+ DA LA+ T +Y L K + +
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 858 DKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYI 917
A K D Q ALN + N K + + +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM---------CY 204
Query: 918 KAGQIYEFTNENEKALECYRKG-KVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNA 976
GQ+Y + ++A ECY++ V KC + ++ ++ +EEW L+ Y+
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEW--DLVLKLNYST 262
Query: 977 AINHYIEAGKN--NKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034
++ L+ + + ++A L I + + + A +
Sbjct: 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322
Query: 1035 TAEKIYS--------HCDMHEQIVDMYHQTGQWEKAYAIAEQ-----------HLNVGEI 1075
I + + D++ + H++G+ K Y I+ L VG
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382
Query: 1076 KATFIQKCKQLEEENKFKEAER---------------------LYLIIGEPDLAISMFKN 1114
NK EA R + I GE D AIS
Sbjct: 383 ----------YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA--- 429
Query: 1115 QRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKM----- 1169
Y +L + H L L + + N A +Y + + +
Sbjct: 430 ---YTTAARLFQGTH-----LPYLFLGMQHMQLGNILLANEYL------QSSYALFQYDP 475
Query: 1170 ---------YRSLNLWEDA---YRIALSNGGQEAVEPVVYLWAKS-LGGDSAVRLLNRLS 1216
+ + + A ++ AL + + + LG +L
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG-----HAYRKLK 530
Query: 1217 LLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
+ ++ I A + + + VH ALV A T ++
Sbjct: 531 MYDAAID----------ALNQG-LLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576
Score = 36.0 bits (83), Expect = 0.13
Identities = 28/210 (13%), Positives = 53/210 (25%), Gaps = 80/210 (38%)
Query: 806 IYLENNEIHKAIDMY---------------------LKLYKWEDA-------LSLAETNN 837
+ E +AI Y ++L A +L + +
Sbjct: 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 838 YEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLL 897
NEL G + + D QTA+N++ A LV+
Sbjct: 476 LLLNEL-----------------GVVAFNKSDMQTAINHF------QNALLLVKKTQSNE 512
Query: 898 ENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNV 957
+ ++ G Y + A++ +G ++ +
Sbjct: 513 KPWA------------ATWANLGHAYRKLKMYDAAIDALNQGL----------LLSTNDA 550
Query: 958 TALEEEW---GDHLIENKQYNAAINHYIEA 984
+ K AI H E+
Sbjct: 551 NV----HTAIALVYLHKKIPGLAITHLHES 576
Score = 34.0 bits (78), Expect = 0.40
Identities = 34/337 (10%), Positives = 89/337 (26%), Gaps = 52/337 (15%)
Query: 963 EWGDHLIENKQYNAAINHYIEA-GKNNKALDTSIKAK------QWKKAVQILQVITNKQD 1015
W + +QY A + D A+ + +A +L
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR 148
Query: 1016 IAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAI-AEQHLNVGE 1074
+ A + D++ A + + + ++ + + A G+
Sbjct: 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208
Query: 1075 IKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMF-KNQRQYENMIK---LVRNYHP 1130
+ + F A+ Y A+ + K ++ ++ L +
Sbjct: 209 V----------YTNLSNFDRAKECY------KEALMVDAKCYEAFDQLVSNHLLTADEEW 252
Query: 1131 DLLDTTLLHLAQECEES---KNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNG 1187
DL+ + + + Y +E + A S+N E L
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK-SSDLLLCK 311
Query: 1188 G---------QEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELA 1238
+ + + + + L+ L ++ + + + ++
Sbjct: 312 ADTLFVRSRFIDVLA--ITTKILEIDPYNLDVYPLHLASLH-------ESGEKNKLYLIS 362
Query: 1239 K--IGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
+ + + + +EA F K+
Sbjct: 363 NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399
Score = 30.2 bits (68), Expect = 7.2
Identities = 43/307 (14%), Positives = 93/307 (30%), Gaps = 53/307 (17%)
Query: 1283 YIHNQDWENAERIAN-----EHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVD-- 1335
+ Q ++ A + +P ++ ++++ + LL + +
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDA----FWLAQVYCCTGDYARAKCLLTKEDLYNRS 149
Query: 1336 -----LIIEKYKMNHMWNDALRVCGEYVP--SKLPLLQQEYEKEINTNISKDIHSLITQA 1388
L + W AL + GE P + ++ + + L +
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL--RG 207
Query: 1389 RQWEQNGEFYNAVECYLKIKNVDVNLMVKILNEVTQLTLKYLNHDQSYKILPSLVPKLME 1448
+ + F A ECY + VD L +L L
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ----LVSNHL---------------LTA 248
Query: 1449 FKQYDLAVRVYLNIDMVKEAVDIFIYTQNWNKARKLCAELKPEYLSYVENQYKEWLKKNG 1508
+++DL +++ + ++A + KL + L E+
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYML-----KLNKTSHEDELRRAEDYLSSINGLEK 303
Query: 1509 DADMLSEIDINTALDMLMKQGQWNQCL---DKAKNINTNLLHKYMALYAMHLIKNKEYAQ 1565
+D+L D L + ++ L K I+ L L+ L ++ E +
Sbjct: 304 SSDLLLCK-----ADTLFVRSRFIDVLAITTKILEIDPYNL-DVYPLHLASLHESGEKNK 357
Query: 1566 LTQLFNE 1572
L + N+
Sbjct: 358 LYLISND 364
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 64.8 bits (158), Expect = 1e-10
Identities = 53/369 (14%), Positives = 105/369 (28%), Gaps = 49/369 (13%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
AF+ T+ + N + +Y + + VT + W
Sbjct: 14 SYEHAFNSQRTEFVTTTATNQVELY----EQDGNGWKHARTFSDHDKIVTCVDWAPKSNR 69
Query: 107 IY-GQSDGKIK----AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI-VRYY 160
I D +T L N + + G I V Y+
Sbjct: 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129
Query: 161 VTEDASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGSD----RI--VTIYESDGR-VHR 212
E+ + R ++ + +L W P +LAAG + + + D +
Sbjct: 130 EQENDWWVSKHLKRPLRSTI--LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS 187
Query: 213 IFDYTAPHYKERE--------FTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN 263
++ P V SPSG A+ +D+ + + PS +
Sbjct: 188 VWGSRLPFNTVCAEYPSGGWVHAVGF-SPSGNALAYAGHDSSVTI--AYPSAPEQPPRAL 244
Query: 264 KTI-PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVK 322
T+ + + +L W + + +A G S L + + S
Sbjct: 245 ITVKLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTG 303
Query: 323 PLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV--ARTPDTLLLGDLHRNLLSEVLW-- 378
+ G + + A+ R + + L +H+N+++ +
Sbjct: 304 NTGEGREEEGPVSFT---------ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354
Query: 379 PDSGRNEKF 387
G F
Sbjct: 355 GTPGNITAF 363
Score = 58.6 bits (142), Expect = 8e-09
Identities = 41/283 (14%), Positives = 81/283 (28%), Gaps = 43/283 (15%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFI--YKLGDDWGDKKVI---------------CNKFIQ 91
+ +SP+ K AV +I + ++ +DW K + N +
Sbjct: 103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL- 161
Query: 92 QCPV------TTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGA 145
V A + + + + + + N Y S +V A+ + G
Sbjct: 162 ---AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN 218
Query: 146 GVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGSDRI 200
+ D S+ Y + +Q R + +P +L W I+AAG +
Sbjct: 219 ALAYAGHDSSVTIAYPSA-----PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273
Query: 201 VTIYESDGRVHRIFDYTAPHYKEREFTVA--CSSPSGQAVVVGSYDNIKLFAWSPSKSVW 258
+ + + + FT + V F K
Sbjct: 274 PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS 333
Query: 259 EEQPNKTIPNLYTISALSW----KRDGSRIACGGLCGSVELFE 297
+ + + I+ L + + G G V L+
Sbjct: 334 QSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 65.4 bits (159), Expect = 2e-10
Identities = 99/589 (16%), Positives = 197/589 (33%), Gaps = 124/589 (21%)
Query: 791 ARMAILNKQFKVAEGIYLENNEIHKAIDMYL-KLYKWEDALSLAETNNYEYNELKKKYIK 849
A +AI N+ F+ A I+ + + A+ + + + + A AE N + + K
Sbjct: 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAK 1113
Query: 850 WLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKG 909
+A + Y K D + + AN + LV YL
Sbjct: 1114 AQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELV---KYLQMARK-------- 1162
Query: 910 LIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLI 969
ESY++ I+ K ++ +L IN N +++ GD
Sbjct: 1163 -KARESYVETELIF-----------ALAK---TNRLAELEEFINGPNNAHIQQ-VGDRCY 1206
Query: 970 ENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQ-HFK 1028
+ K Y+AA Y + T + +++ AV + A +T + F
Sbjct: 1207 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK-------ANSTRTWKEVCFA 1259
Query: 1029 TV--KDYKTAE----KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQK 1082
V K+++ A+ I H D E++++ Y G +E+ + E L +
Sbjct: 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---------- 1309
Query: 1083 CKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQ 1142
ER ++ + +LAI L + P + L
Sbjct: 1310 -------------ERAHMGM-FTELAI--------------LYSKFKPQKMREHLELFWS 1341
Query: 1143 ECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKS 1202
K + AE+ +L W + +Y +++A + W +
Sbjct: 1342 RVNIPKVLRAAEQAHL----WAELVFLYDKYEEYDNAIIT--------MMNHPTDAWKEG 1389
Query: 1203 LGGDSAVRLLNRLSLLESCISNACDTYQF---DFAFELAK-------IGMKSKLEEVH-- 1250
D ++ N + L I + D L+ + SK++++
Sbjct: 1390 QFKDIITKVAN-VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 1448
Query: 1251 --YKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDIL 1308
Y ++ +N NE+ ++I +D++ + +D + +I
Sbjct: 1449 KPYLRSVQNHNNKSVNESLNN------------LFITEEDYQALRTSIDAYD--NFDNIS 1494
Query: 1309 LNQSKCEFENENFSKFETLLLRAHKV-DLIIEKYKMNHMWNDALRVCGE 1356
L Q + E F + L + + +E K + ++ DA++ E
Sbjct: 1495 LAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASE 1543
Score = 42.7 bits (100), Expect = 0.001
Identities = 76/524 (14%), Positives = 163/524 (31%), Gaps = 112/524 (21%)
Query: 1032 DYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLE---- 1087
D I ++ E+ ++ + A + +H+ + F ++C +
Sbjct: 1051 DAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQ 1110
Query: 1088 ------EENKFKEAERLYLIIGEPDL---AISMFKNQRQYENMIKLVRNYH----PDLLD 1134
++ KEA Y+ +P + +E ++K ++ ++
Sbjct: 1111 LAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 1170
Query: 1135 TTLL-------------------------HLAQECEESKNYKQAEKYYLDCNEW-KLAIK 1168
T L+ + C + K Y A+ Y + + + +LA
Sbjct: 1171 TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAST 1230
Query: 1169 MYRSLNLWE--DAYRIALSNGG-QEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNA 1225
+ D R A S +E V L + ++ LE I+
Sbjct: 1231 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY 1290
Query: 1226 CDTYQFDFAFELAKIGMKSKLEEVH-------------YKYALVLEDNGQFNE--AETQF 1270
D F+ + + + LE H +K + E F +
Sbjct: 1291 QDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348
Query: 1271 IKANKP----KEAISMYIHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFET 1326
++A + E + +Y ++++NA H + ++ F
Sbjct: 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA------------WKEGQF----- 1391
Query: 1327 LLLRAHKVDLIIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLIT 1386
D+I + + + A++ E+ P L L ++ T
Sbjct: 1392 -------KDIITKVANVELYYR-AIQFYLEFKPLLLNDLLMVLSPRLD----------HT 1433
Query: 1387 QARQWEQNGEFYNAVECYLKIKNVDVNLMVK-ILNEVTQLTLKYLNHDQSYKILPSLVPK 1445
+A + + V+ YL+ N V LN + ++ Y+ L + +
Sbjct: 1434 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNL-------FITEEDYQALRTSIDA 1486
Query: 1446 LMEFKQYDLAVRVYLN--IDMVKEAVDIFIYTQNWNKARKLCAE 1487
F LA R+ + I+ + A +F W ++ +LC +
Sbjct: 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK 1530
Score = 40.0 bits (93), Expect = 0.008
Identities = 67/381 (17%), Positives = 127/381 (33%), Gaps = 99/381 (25%)
Query: 858 DKAGELYEKEGDHQTALNYYLKANFTS------KACNLVQNEPYLLENHDVVSQIV---- 907
+ G++Q A++ KAN T AC V + + L + +V
Sbjct: 1225 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC--VDGKEFRLAQMCGLHIVVHADE 1282
Query: 908 -KGLIKNESYIKAGQIYEFTNENEKALEC-----------------YRKGKVYDKCIDLT 949
+ LI Y G E E AL ++ K+ +
Sbjct: 1283 LEELIN--YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340
Query: 950 RKIN-PKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIK--AKQWKKAVQI 1006
++N PK + A E+ + + Y + + + A+ T + WK+
Sbjct: 1341 SRVNIPKVLRAAEQAH--------LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF- 1391
Query: 1007 LQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDM---------HEQIVDMYHQTG 1057
+DI V + +++ ++ Y K D+ H + V+ + +
Sbjct: 1392 -------KDIITKVANVELYYRAIQFY-LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443
Query: 1058 QWE--KAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQ 1115
Q K Y + Q+ N + + L I E D
Sbjct: 1444 QLPLVKPYLRSVQNHNNKSVNESLNN------------------LFITEED--------- 1476
Query: 1116 RQYENMIKLVRNYHPDLLDTTLLHLAQECE--ESKNYKQAEKY-YLDCNEWKLAIKMYRS 1172
Y+ + + Y D D + LAQ E E +++ Y + N WK ++++ +
Sbjct: 1477 --YQALRTSIDAY--DNFDN--ISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK 1530
Query: 1173 LNLWEDAYRIALSNGGQEAVE 1193
+L++DA + A + E E
Sbjct: 1531 DSLYKDAMQYASESKDTELAE 1551
Score = 34.6 bits (79), Expect = 0.36
Identities = 65/331 (19%), Positives = 113/331 (34%), Gaps = 71/331 (21%)
Query: 962 EEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVK 1021
EE GD L+++ A++ Y+ A NK + + Q +K V + + D
Sbjct: 461 EELGD-LVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIF--- 516
Query: 1022 TLAQHFKTVKDYKTAEKIYSHCDMHE------QIVDMYHQTGQWEKAYAIAEQHLNVGEI 1075
L ++ + + + E QIVD++ + ++ A L
Sbjct: 517 -LLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRP 575
Query: 1076 KATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQR--QYENMIKLVRNYHPDLL 1133
+Q +L E N ++ P +A ++ NQ Y+
Sbjct: 576 SEGPLQT--RLLEMN----------LMHAPQVADAILGNQMFTHYDRA------------ 611
Query: 1134 DTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNL-WEDAYRIALS------- 1185
H+AQ CE++ ++A +++ D + K A+ LN W Y +LS
Sbjct: 612 -----HIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLEC 666
Query: 1186 -------NGGQ--EAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFE 1236
N Q + V + + L S + L E + F
Sbjct: 667 LRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG-------LFYF----- 714
Query: 1237 LAKIGMKSKLEEVHYKYALVLEDNGQFNEAE 1267
L I S+ +VH+KY GQ E E
Sbjct: 715 LGSIVNFSQDPDVHFKYIQAACKTGQIKEVE 745
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR binding;
2.30A {Mus musculus}
Length = 338
Score = 62.3 bits (152), Expect = 5e-10
Identities = 45/397 (11%), Positives = 115/397 (28%), Gaps = 101/397 (25%)
Query: 806 IYLENNEIHKAIDMY---LKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGE 862
++ + + + +++ ED +L+ Y++L G
Sbjct: 14 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAI----YSQL-----------------GN 51
Query: 863 LYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQI 922
Y D+ AL Y+ ++ + + ++ + G
Sbjct: 52 AYFYLHDYAKALEYHHHDLTLART----------IGDQLGEAK---------ASGNLGNT 92
Query: 923 YEFTNENEKALECYRKGKVYDKCIDLTRKIN--PKNVTALE------EEWGDHLIENKQY 974
+ ++A+ C ++ +D++R++N AL G
Sbjct: 93 LKVLGNFDEAIVCCQR------HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146
Query: 975 NAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034
+ A+D +++ + ++ + ++ + L + +++
Sbjct: 147 DTGEFPEDVRNALQAAVDL------YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200
Query: 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEI--------KA-TFIQKCKQ 1085
A HEQ + + + G A + N+G A + +K
Sbjct: 201 DAVI------AHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251
Query: 1086 LEEE--NKFKEAE------RLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTL 1137
L + ++ EA+ Y ++ + + AI I
Sbjct: 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQELKDRIGEG-RAC 306
Query: 1138 LHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
L N+ QA + + +++ R +
Sbjct: 307 WSLGNAYTALGNHDQAMHFA------EKHLEISREVG 337
Score = 56.9 bits (138), Expect = 2e-08
Identities = 53/354 (14%), Positives = 100/354 (28%), Gaps = 108/354 (30%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
GE K GD + ++++ A + E+ +S I L G
Sbjct: 12 GERLCKSGDCRAGVSFFEAA--------VQVGT----EDLKTLSAIYSQL---------G 50
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
Y + ++ KALE + + L R I GD L E K N
Sbjct: 51 NAYFYLHDYAKALEYHH------HDLTLARTI------------GDQLGEAKASGNLGNT 92
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQ--------------------HV 1020
G ++A+ ++ + I + + +K A+
Sbjct: 93 LKVLGNFDEAIV------CCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146
Query: 1021 KTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVD-------------MYHQTGQWEKAYAIA 1066
T + A +Y + + D ++ G + A
Sbjct: 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206
Query: 1067 EQHLNVGEIKATFIQKCKQLEEENKFKEAERL------YLIIGEPDLAISMFKNQRQYEN 1120
EQ L + K+ +K E Y+ +GE + A +K
Sbjct: 207 EQRLLI----------AKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL--- 251
Query: 1121 MIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
+ + L ++Y++A Y+L + + + L
Sbjct: 252 -LARQLKDRAVEA-QSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQELK 297
Score = 48.8 bits (117), Expect = 1e-05
Identities = 29/263 (11%), Positives = 68/263 (25%), Gaps = 53/263 (20%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQ 973
G+ + + + + A++ D +
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEA--------------------AVQVGTEDLKTLSAI 45
Query: 974 YNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDY 1033
Y+ N Y KAL+ + + + I ++ A+ L K + ++
Sbjct: 46 YSQLGNAYFYLHDYAKALEY------HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 99
Query: 1034 KTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFK 1093
A ++ +D+ + A N+G + + K K
Sbjct: 100 DEAI------VCCQRHLDISRELNDK---VGEARALYNLGNV---YHAKGKSFGCPGPQD 147
Query: 1094 EAERLYLIIGEPDLAISMFKNQRQYENMIKLVR--NYHPDLLDTTLLHLAQECEESKNYK 1151
E + A+ + YE + LV +L N++
Sbjct: 148 TGEFPEDVRNALQAAVDL------YEENLSLVTALGDRAAQG-RAFGNLGNTHYLLGNFR 200
Query: 1152 QAEKYYLDCNEWKLAIKMYRSLN 1174
A + + + + +
Sbjct: 201 DAVIAH------EQRLLIAKEFG 217
Score = 45.3 bits (108), Expect = 1e-04
Identities = 53/386 (13%), Positives = 116/386 (30%), Gaps = 96/386 (24%)
Query: 710 DFGKAILYLE-SLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTT-HFLRET 767
D + + E ++ + ++L ++ L A Y L D + +
Sbjct: 20 DCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNA---YFYLHDYAKALEYHHHD 69
Query: 768 IKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMY---LKLY 824
+ + IGD L + + +AI L +
Sbjct: 70 LTLAR------TIGDQLGEAKASGNLGN----------TLKVLGNFDEAIVCCQRHLDIS 113
Query: 825 -KWEDALSLAET-NN--YEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKA 880
+ D + A N Y+ K + +D + Q A++ Y +
Sbjct: 114 RELNDKVGEARALYNLGNVYHAKGKSF----GCPGPQDTGEFPEDVRNALQAAVDLYEEN 169
Query: 881 NFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGK 940
L L + + ++ G + A+ + +
Sbjct: 170 --------LSLVT--ALGDRAAQGR---------AFGNLGNTHYLLGNFRDAVIAHEQ-- 208
Query: 941 VYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQW 1000
+ + ++ GD E + Y+ N YI G+ A + +
Sbjct: 209 ----RLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEY------Y 246
Query: 1001 KKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVD-------- 1051
KK + + + + ++ AQ +L + ++DY+ A + + +++ D
Sbjct: 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306
Query: 1052 -----MYHQTGQWEKAYAIAEQHLNV 1072
Y G ++A AE+HL +
Sbjct: 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 34.9 bits (81), Expect = 0.18
Identities = 50/341 (14%), Positives = 103/341 (30%), Gaps = 102/341 (29%)
Query: 710 DFGKAI-LYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDIST--THF--- 763
D+ KA+ + L + + + A NL LG+
Sbjct: 58 DYAKALEYHHHDLTLARTI-----GDQLGEAKASGNL---GNTLKVLGNFDEAIVCCQRH 109
Query: 764 --LRETIK-----------IGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLEN 810
+ + +G V+ + + + + A +Y EN
Sbjct: 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169
Query: 811 NEIHKAID--------------MYLKLYKWEDALSLAETNNYEYN---ELKKKYIKWLTD 853
+ A+ + L + DA+ + + K++ D
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA-------HEQRLLIAKEF----GD 218
Query: 854 TRQEDKA----GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKG 909
E +A G Y G+ +TA YY K L+ L++ V +Q
Sbjct: 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKT--------LLLAR--QLKDRAVEAQ---- 264
Query: 910 LIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLI 969
S G Y + EKA++ + K + + +++ D +
Sbjct: 265 -----SCYSLGNTYTLLQDYEKAIDYHL------KHLAIAQEL------------KDRIG 301
Query: 970 ENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVI 1010
E + + N Y G +++A+ +K ++I + +
Sbjct: 302 EGRACWSLGNAYTALGNHDQAMHF------AEKHLEISREV 336
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 61.9 bits (151), Expect = 6e-10
Identities = 39/266 (14%), Positives = 93/266 (34%), Gaps = 31/266 (11%)
Query: 49 VKGLAFSPDS---TKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP 105
+ L+FSP + L N + +++ D + + + + PV + W DG
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 106 IIY-GQSDGKIKAAHVKANKTQTLYASNSFV--VALCLNVRGAGVLSGHADGSIVRYYVT 162
++ D K + +N+ + ++ V + + V++G D ++ +++
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL-KFW-- 156
Query: 163 EDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYK 222
D + V+Q P Y + A ++R + +Y+ + + F K
Sbjct: 157 -DTRS--SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQ-PSEFRRIESPLK 212
Query: 223 EREFTVACSSPSGQ----AVVVGSYDN-IKLFAWSPSKSVWE----------EQPNKTIP 267
+ VA Q +GS + + + +P +
Sbjct: 213 HQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271
Query: 268 NLYTISALSWKRDGSRIACGGLCGSV 293
++Y ++ +++ +A G G
Sbjct: 272 DIYAVNGIAFHPVHGTLATVGSDGRF 297
Score = 32.6 bits (75), Expect = 1.1
Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 27/123 (21%)
Query: 16 DDVFNLDIVRLRS-EGNVAGIWAWRGQNGRKS--------------------YVVKGLAF 54
D L S EG VA I N K Y V G+AF
Sbjct: 223 DKQNKPTGFALGSIEGRVA-IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281
Query: 55 SPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPII-YGQSDG 113
P LA SD + D + + P++ + +G I Y S
Sbjct: 282 HPVHGTLATVGSDGRFSFW----DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337
Query: 114 KIK 116
K
Sbjct: 338 WSK 340
Score = 32.6 bits (75), Expect = 1.2
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 10/49 (20%)
Query: 38 WRGQNGRKSYVVKG-------LAFSPDSTKLAVAQSDNIIFIYKLGDDW 79
W K + F+ + A A S + K + +
Sbjct: 300 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS---KGHEFY 345
Score = 31.9 bits (73), Expect = 1.6
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 228 VACS--SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN-KTIPN-LYT----ISALSWK 278
++ S + G ++ GS+ N ++ WE Q + +TIP + + W
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRC---------WEVQDSGQTIPKAQQMHTGPVLDVCWS 95
Query: 279 RDGSRIACGGLCGSVELF 296
DGS++ + +++
Sbjct: 96 DDGSKVFTASCDKTAKMW 113
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 61.9 bits (151), Expect = 7e-10
Identities = 47/405 (11%), Positives = 103/405 (25%), Gaps = 123/405 (30%)
Query: 820 YLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLK 879
L L + + N+ + + L + GE GD + + ++
Sbjct: 18 SLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALE----GERLCNAGDCRAGVAFFQA 73
Query: 880 ANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKG 939
A + E+ +S I L G Y + + KA++ ++
Sbjct: 74 A--------IQAGT----EDLRTLSAIYSQL---------GNAYFYLGDYNKAMQYHKH- 111
Query: 940 KVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQ 999
+ L + + D L E K N G+ ++A
Sbjct: 112 -----DLTLAKSM------------NDRLGEAKSSGNLGNTLKVMGRFDEAAIC------ 148
Query: 1000 WKKAVQILQVITNKQDIA-----------------QHVKTLAQHFKTVKDYKTAEKIYSH 1042
++ + + + + ++ + A + Y
Sbjct: 149 CERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 1043 C-DMHEQIVD-------------MYHQTGQWEKA-----------------YAIAEQHLN 1071
+ + D Y+ G ++ A A + N
Sbjct: 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268
Query: 1072 VGEI--------KA-TFIQKCKQLEEE--NKFKEAE------RLYLIIGEPDLAISMFKN 1114
+G A ++ L E + EA+ Y ++ E + AI
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY--- 325
Query: 1115 QRQYENMIKLVR--NYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157
+ + + + L +++A KY
Sbjct: 326 ---HNRHLAIAQELGDRIGEA-RACWSLGNAHSAIGGHERALKYA 366
Score = 48.5 bits (116), Expect = 1e-05
Identities = 48/389 (12%), Positives = 118/389 (30%), Gaps = 109/389 (28%)
Query: 710 DFGKAILYLE-SLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTT-HFLRET 767
D + + + ++ ++L ++ L A Y LGD + + +
Sbjct: 63 DCRAGVAFFQAAIQAGT-------EDLRTLSAIYSQLGNA---YFYLGDYNKAMQYHKHD 112
Query: 768 IKIGEVWSKENNIGDPLQCPELWARMAILNK---QFKVAEGIYLENNEIHKAIDMYLKLY 824
+ + + ++ D L + + K +F A + + + +L
Sbjct: 113 LTLAK------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC------ERHLTLARQLG 160
Query: 825 -KWEDALSLAETNN----Y----EYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALN 875
+ + +L N Y ++ + +A E Y++ L
Sbjct: 161 DRLSEGRAL---YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE------NLK 211
Query: 876 YYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALEC 935
+ + G Y + + A+E
Sbjct: 212 LMRDLG----------------DRGAQGR----------ACGNLGNTYYLLGDFQAAIEH 245
Query: 936 YRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSI 995
+++ + + R+ GD E + + N +I G+ A +
Sbjct: 246 HQE------RLRIAREF------------GDRAAERRANSNLGNSHIFLGQFEDAAE--- 284
Query: 996 KAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVD--- 1051
+K+ + + + ++ AQ +L + + ++ TA + ++ + +++ D
Sbjct: 285 ---HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341
Query: 1052 ----------MYHQTGQWEKAYAIAEQHL 1070
+ G E+A AEQHL
Sbjct: 342 EARACWSLGNAHSAIGGHERALKYAEQHL 370
Score = 38.4 bits (90), Expect = 0.018
Identities = 16/169 (9%), Positives = 40/169 (23%), Gaps = 31/169 (18%)
Query: 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLN 1071
+ + H + ++ S C + G A + +
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI- 75
Query: 1072 VGEIKATFIQKCKQLEEENKFKEAERL------YLIIGEPDLAISMFKNQRQYENMIKLV 1125
Q E+ + Y +G+ + A+ K+ +
Sbjct: 76 -------------QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT----LAKS 118
Query: 1126 RNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
N + +L + + +A + + + R L
Sbjct: 119 MNDRLGEA-KSSGNLGNTLKVMGRFDEAAICC------ERHLTLARQLG 160
Score = 36.1 bits (84), Expect = 0.087
Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 78/260 (30%)
Query: 689 HQLGYELDESLIEFGTAVHDSDFGKAI-LYLESLGINKKEAEGMWQNLAEVAIQLHNLHV 747
H G L + +A+ Y E+L + + + NL
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL-----GDRGAQGRACGNL-- 229
Query: 748 AEICYAALGDIST-THFLRETIKI--------GEVWSKENNIGDPLQCPELWARMAILNK 798
Y LGD +E ++I E + +N+G+ +
Sbjct: 230 -GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN-SNLGN------SHIFL----G 277
Query: 799 QFKVAEGIYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQED 858
QF+ A Y + + + ++L + A++ L
Sbjct: 278 QFEDAAEHY------KRTLALAVELG---EREVEAQS----CYSL--------------- 309
Query: 859 KAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIK 918
G Y + TA+ Y+ + ++ L + ++ L
Sbjct: 310 --GNTYTLLHEFNTAIEYHNRHLAIAQE----------LGDRIGEARACWSL-------- 349
Query: 919 AGQIYEFTNENEKALECYRK 938
G + +E+AL+ +
Sbjct: 350 -GNAHSAIGGHERALKYAEQ 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 1e-09
Identities = 92/586 (15%), Positives = 158/586 (26%), Gaps = 251/586 (42%)
Query: 1039 IYSHCDMHEQIVDMYHQT-GQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAER 1097
+ Q+ + +++ + + +A ++ E+ F+ L E +K + ++
Sbjct: 26 SFFIA---SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 1098 -LYLIIGEPDLAISMFKNQRQY--ENMIKLVRNYHPDLLDTTLLHLAQECE--ESKNYKQ 1152
L L + E F + Y N I H L QE + K +
Sbjct: 83 VLNLCLTE-------F--ENCYLEGNDI------H-----ALAAKLLQENDTTLVKTKEL 122
Query: 1153 AEKYYLDCNEWKLAI-KMYRSLNLWEDA----YRIALSNGGQEAVEPVVYLWAKSLGGDS 1207
+ Y K K S L+ ++ GGQ G++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSA-LFRAVGEGNAQLVAIFGGQ---------------GNT 166
Query: 1208 AVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYK-YALVLEDNGQFNEA 1266
D Y F+ EL + Y+ Y +++ D +
Sbjct: 167 -------------------DDY-FE---ELRDL----------YQTYHVLVGD--LIKFS 191
Query: 1267 ETQFIK-ANKPKEAISMYIHNQD---W-ENAERIANE----HDPTSIGDILLNQ------ 1311
+ +A ++ + W EN ++ P S I + Q
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 1312 -------------------SKC-----------------EFENENFSKFETLL----LRA 1331
+ F + K T+L +R
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVRKAITVLFFIGVRC 310
Query: 1332 HKVDLIIEKYKMNHMWNDALRVC---GEYVPSKLPLL------QQEYEKEIN-TN----I 1377
+ E Y + L E VPS P+L Q++ + +N TN
Sbjct: 311 Y------EAYPNTSLPPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 1378 SKDIH-SLITQARQWEQNGEFYNAVECYLKIKNVDVNLMVKILNEVT--QLTLKYLNH-- 1432
K + SL+ NG KN +V V+ +L LN
Sbjct: 363 GKQVEISLV--------NGA-----------KN-----LV-----VSGPPQSLYGLNLTL 393
Query: 1433 ---------DQSYKI-------------LPSLVP---KLME----------------FKQ 1451
DQS +I LP P L+ F
Sbjct: 394 RKAKAPSGLDQS-RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 1452 YDLAVRVY----------LNIDMVKEAVD-IFIYTQNWNKARKLCA 1486
D+ + VY L+ + + VD I W + A
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 57.4 bits (138), Expect = 5e-08
Identities = 95/584 (16%), Positives = 175/584 (29%), Gaps = 202/584 (34%)
Query: 756 GDISTT-------HF----LRETIKIGEVWSKENNIGD--PLQCPELWAR---------- 792
G + F L+E E D P EL +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 793 -------MAILNKQFKVAEGIYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKK 845
+LN E YLE N+IH A+ A L + N+ + K
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIH-AL-----------AAKLLQENDTTLVK-TK 120
Query: 846 KYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLV-----Q--NEPY--- 895
+ IK R A ++K+ +AL +A A LV Q + Y
Sbjct: 121 ELIKNYITARIM--AKRPFDKK--SNSAL---FRAVGEGNA-QLVAIFGGQGNTDDYFEE 172
Query: 896 LLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKI-NP 954
L + + +V LIK A + E A + + +G +++ + NP
Sbjct: 173 LRDLYQTYHVLVGDLIKFS----AETLSELIRTTLDAEKVFTQG------LNILEWLENP 222
Query: 955 KNVTALEEEWGDH------LIENKQYNAAINHYI----EAGKNNKALDTSIK-------- 996
++++ LI Q + HY+ G L + +K
Sbjct: 223 S--NTPDKDYLLSIPISCPLIGVIQ----LAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 997 ---------AKQW-------KKAVQILQVI-TNKQDIAQHVKTLAQHFKTVKDYKTA-EK 1038
W +KA+ +L I + + +L ++D E
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPP--SILEDSLENNEG 333
Query: 1039 IYSHCDM-------HEQI---VDMYHQTGQWEKAYAIA----EQHLNV-GEIKA-----T 1078
+ S M EQ+ V+ + K I+ ++L V G ++
Sbjct: 334 VPSP--MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 1079 FIQKCK--QLEEENKFKEAER------LYLIIGEPDLAISMFKNQRQYENMIKLVRNYHP 1130
++K K ++++ +ER +L + P +H
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP----------------------FHS 429
Query: 1131 DLLDTTLLHLAQECEESK-NYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQ 1189
LL + ++ ++ ++ + + I +Y + + D R+ + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKD----------IQIPVYDTFD-GSD-LRVLSGSISE 477
Query: 1190 EAV-----EPVVYLWAKSL------------GGDSAV-RLLNRL 1215
V PV W + GG S + L +R
Sbjct: 478 RIVDCIIRLPV--KWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 44.3 bits (104), Expect = 4e-04
Identities = 87/556 (15%), Positives = 162/556 (29%), Gaps = 177/556 (31%)
Query: 88 KFIQQCP-VTTMVWLADGPIIYGQSDGKIKA------AHVKANKTQTLYASNSFVVALCL 140
+F + P T D P + ++ + + + V+ LCL
Sbjct: 36 QFNKILPEPTEGFAADDEPT----TPAELVGKFLGYVSSLVEPSKVGQFDQ---VLNLCL 88
Query: 141 NVRGAGVLSG---HA---------------DGSIVRYYVTEDASNFDQQQGRVVQHPVPP 182
L G HA +++ Y+T A R
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT--ARIM---AKRPFDKKSNS 143
Query: 183 YALSWPAGYILAAGSDRIVTIYESDGRVHRIFD-----YTAPHYKEREFTVACSSPSGQA 237
AL + A + G+ ++V I+ G F+ Y H + + S+ +
Sbjct: 144 -AL-FRA---VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETLSE 197
Query: 238 VVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISA-LSW---------------KRDG 281
++ + D K+F + W E P+ T Y +S +S K G
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 282 SR------IACGGL-CG-------------SVELFESVLKRTI----WKG-----KFEMI 312
G S E F +++ I + G +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 313 YVSPSQVLVKPLSGESKG--------RGVILKS---------QYGYEITDVAIM---GND 352
+ PS + + E G + + + V I G
Sbjct: 318 SLPPSILEDSLENNE--GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 353 RYLVARTPDTLLLGDLH-RNLL-------SEVLWPDSGRNEKFY--FDNVTVCLVFNAGE 402
+V+ P +L +L R S + P S R KF F V F++
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--PFSERKLKFSNRFLPVAS--PFHS-- 429
Query: 403 LSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIPNLY-TISALSWKRDGS--RIAC 459
++ ++ I + +++ IP +Y T DGS R+
Sbjct: 430 -HLLVPASDLINKDLVKNNVSFNAKDI--------QIP-VYDT-------FDGSDLRVLS 472
Query: 460 GGLCGSVELFESVLKRTI-WKGKFEMIYVSPSQVL---------VKPLSGESK-GRG--V 506
G + + + +++ + W+ + +L + L+ +K G G V
Sbjct: 473 GSISER--IVDCIIRLPVKWE---TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 507 IL--------KSQYGY 514
I+ YG+
Sbjct: 528 IVAGTLDINPDDDYGF 543
Score = 43.9 bits (103), Expect = 6e-04
Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 43/178 (24%)
Query: 1486 AELKPEYLSYVEN--------QYKEWLK---KNGDADMLSEIDINTALDMLMKQGQWNQC 1534
AEL ++L YV + Q+ + L + L DI+ L+++
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND--TT 115
Query: 1535 LDKAKNINTNLLHKYMALYAMH----------LIK--NKEYAQLTQLFNEYGTPNIP--- 1579
L K K + + + A L + + AQL +F G +
Sbjct: 116 LVKTKEL---IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 1580 --QFYNIYKQTAYCILNDSNENVNLIISLRNMLFNVIKNQNNNEEIDKQYLQTNSLLH 1635
Y Y ++ D LI L +I+ + E++ Q L L
Sbjct: 173 LRDLYQTYH----VLVGD------LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Score = 43.5 bits (102), Expect = 7e-04
Identities = 96/595 (16%), Positives = 174/595 (29%), Gaps = 227/595 (38%)
Query: 252 SPSKSVWEEQPNKTIPNL------YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW 305
P++ + T L Y S + + G F+ VL +
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ-------------FDQVLNLCLT 89
Query: 306 KGKFEMIYVSPSQV--LVKPLSGESKG----RGVILKSQYGYEITDVAIMGNDRYLVART 359
+ FE Y+ + + L L E+ ++K+ Y+ AR
Sbjct: 90 E--FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN----------------YITARI 131
Query: 360 PDTLLLGDLHRN-LLSEVLWPDS---------GRNEKFYFDNVTVCLVFNAGELSII--E 407
+ L V ++ G + YF+ EL +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-YFE-----------ELRDLYQT 179
Query: 408 YGN--NEILTCVSIKL--FAWSPSKSV-----------WEEQPNKTIPNLYTISA-LSWK 451
Y +++ + L + + W E P+ T Y +S +S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 452 RDGSRIACGGLCGSVEL--FESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES-KGRGVIL 508
L G ++L + K G +P + L L G + +G+
Sbjct: 240 ----------LIGVIQLAHYVVTAKLL---G------FTPGE-LRSYLKGATGHSQGL-- 277
Query: 509 KSQYGYEITDVAI-MGNDR---YLVARTLLTE-FMNPHLISVRLNERKQVHSQQENKKLA 563
+T VAI + ++ R +T F I VR + A
Sbjct: 278 -------VTAVAIAETDSWESFFVSVRKAITVLF----FIGVR--------CYE-----A 313
Query: 564 Y-LLDLHTICVIDLITN---LPT--LHINH------DSKIDWLELNETAHKLLYRDKKMR 611
Y L + D + N +P+ L I++ ++ + N +H L K++
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN--KTN--SH--LPAGKQVE 367
Query: 612 LTLLDIRTSEKHNIL-----NYCTFVQWL------PGSDVVVAQSRHNACVWYNIDTP-- 658
++L++ K+ ++ + L G D QSR P
Sbjct: 368 ISLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD----QSR----------IPFS 410
Query: 659 DR----ITQF-PVR--------GDIIDVIRENGQSEIL-------------TQDGNH--Q 690
+R +F PV D+I ++ + T DG+
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 691 LGYELDESLIE-------------FGTAVHDSDFGK-AILYLESLGINKKEAEGM 731
L + E +++ A H DFG L L K+ G+
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Score = 40.8 bits (95), Expect = 0.005
Identities = 45/321 (14%), Positives = 81/321 (25%), Gaps = 140/321 (43%)
Query: 335 LKSQYGYEITDVAIMGNDRYLVARTPDTLL----------LGDLHRNLLSEVLWPDSGRN 384
K YG+ I D+ V P L + + + ++ E + D
Sbjct: 1653 FKDTYGFSILDI---------VINNPVNLTIHFGGEKGKRIRENYSAMIFETI-VDGKLK 1702
Query: 385 EKFYFDNVTVCLVFNAGELSIIEYGNNEILT----------CVSIKLFAWSPSKSVWEEQ 434
+ F + S +L+ + F + +
Sbjct: 1703 TEKIFKEINEHS------TSYTFRSEKGLLSATQFTQPALTLMEKAAFE------DLKSK 1750
Query: 435 PNKTIPNL--------YTISALSWKRDGSRIACGGLCGSVELFESVLK----RTIWKGKF 482
Y +AL+ + V ES+++ R G
Sbjct: 1751 GLIPADATFAGHSLGEY--AALA--------SLAD----VMSIESLVEVVFYR----GMT 1792
Query: 483 E---------------MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY 527
MI ++P +V S E+ V + + ++ N
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRV-AASFSQEALQYVVERVGKRTGWLVEIV---NY-- 1846
Query: 528 LVARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYLLDLHTICVI-------DLITNL 580
N V +QQ Y V D +TN+
Sbjct: 1847 -----------N-------------VENQQ------Y--------VAAGDLRALDTVTNV 1868
Query: 581 PTLHINHDSKIDWLELNETAH 601
L+ KID +EL ++
Sbjct: 1869 --LNFIKLQKIDIIELQKSLS 1887
Score = 39.6 bits (92), Expect = 0.010
Identities = 56/323 (17%), Positives = 102/323 (31%), Gaps = 127/323 (39%)
Query: 1289 WENAERIANEHDPTSIGDILLNQSK---CEFE-------NENFSK--FETLL---LRAHK 1333
W A+ + SI DI++N F EN+S FET++ L+ K
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 1334 VDLIIEKYKMNHMWND-------------ALRVCGEYVPSKLPLLQQEYEKEINTNISKD 1380
+ I ++ ++ + AL + E + L+ + I D
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM-EKAAFE--DLKSK------GLIPAD 1756
Query: 1381 I----HSLITQARQWEQNGEFYNAVECY---LKIKNVDVNLMVKILN---EVTQLTLKYL 1430
HSL GE Y A+ + I+++ V+++ Q+ +
Sbjct: 1757 ATFAGHSL----------GE-YAALASLADVMSIESL-----VEVVFYRGMTMQVAVPRD 1800
Query: 1431 NHDQS-YKILPSLVPKLMEFKQYDLAVRVYLNIDMVKEAVDIFIYTQNWNKARKLCAELK 1489
+S Y ++ ++ P + +EA+ + + +
Sbjct: 1801 ELGRSNYGMI-AINPGRVA-------------ASFSQEAL------------QYVVERVG 1834
Query: 1490 PEYLSYVE--NQYKEWLKKN---------GDADMLSEIDINTALDMLMKQGQWNQCLD-- 1536
VE N Y N GD ALD + L+
Sbjct: 1835 KRTGWLVEIVN-Y------NVENQQYVAAGDLR---------ALDTVTN------VLNFI 1872
Query: 1537 KAKNINTNLLHKYMALYAM--HL 1557
K + I+ L K ++L + HL
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEGHL 1895
Score = 37.7 bits (87), Expect = 0.041
Identities = 56/368 (15%), Positives = 106/368 (28%), Gaps = 130/368 (35%)
Query: 510 SQY-GYEITDVAIMGNDRYL---VARTLLTEFMNPHLISVRLNERKQVHSQQENKKLAYL 565
SQ G MG D Y A+ + N+ +
Sbjct: 1626 SQEQG--------MGMDLYKTSKAAQDVW------------------------NRADNHF 1653
Query: 566 LDLHTICVIDLITNLPTLHINHDSKIDWLELNETAHKLLYR---DKKMRLTLLDIRTSEK 622
D + ++D++ N P H + E +++ D K++ + +E
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 623 HNILNYCTFVQWLPGSDVVVAQSRHNACVWYNIDTPDRITQ---FPVRGDIIDVIRENGQ 679
TF +++ T + TQ + + ++ G
Sbjct: 1714 ---STSYTF----RSEKGLLSA------------T--QFTQPALTLMEKAAFEDLKSKG- 1751
Query: 680 SEILTQD----GNHQLGYELDESLIEFGTA-VHDSDF-------------GKAILYLESL 721
++ D G H LG E+ A +D G +
Sbjct: 1752 --LIPADATFAG-HSLG--------EY-AALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 722 GINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETIKIGEVWSKEN-NI 780
+ GM +AI + A AL + + T G + N N
Sbjct: 1800 DELGRSNYGM------IAINPGRV-AASFSQEALQYV-VERVGKRT---GWLVEIVNYN- 1847
Query: 781 GDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDM--YLKLYKWEDALSLAETNNY 838
N+Q+ VA G + + ++ ++KL K D + L ++ +
Sbjct: 1848 -----VE---------NQQY-VAAG---DLRALDTVTNVLNFIKLQK-IDIIELQKSLSL 1888
Query: 839 EYNELKKK 846
E E++
Sbjct: 1889 E--EVEGH 1894
Score = 36.6 bits (84), Expect = 0.098
Identities = 49/276 (17%), Positives = 83/276 (30%), Gaps = 124/276 (44%)
Query: 156 IVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYES--DGRVH-- 211
IV +F ++G+ ++ Y I+E+ DG++
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRE-----------NYSAM--------IFETIVDGKLKTE 1704
Query: 212 RIF--------DYTAPHYKER----EFTVACSSPSGQ-AVVVGSYDNIKLFAWSPSKSVW 258
+IF YT K +FT Q A L K+ +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFT--------QPA----------LTLM--EKAAF 1744
Query: 259 EE-QPNKTIPN--------L--YTISALSWKRDGSRIACGGLCGSVELFESVLK----RT 303
E+ + IP L Y +AL+ + V ES+++ R
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEY--AALA--------SLAD----VMSIESLVEVVFYR- 1789
Query: 304 IWKGKFE---------------MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAI 348
G MI ++P +V S E+ V + + ++
Sbjct: 1790 ---GMTMQVAVPRDELGRSNYGMIAINPGRV-AASFSQEALQYVVERVGKRTGWLVEIV- 1844
Query: 349 MGND-----RYLVARTPDTLLLGDLHRNL--LSEVL 377
N +Y+ A GDL R L ++ VL
Sbjct: 1845 --NYNVENQQYVAA--------GDL-RALDTVTNVL 1869
Score = 35.4 bits (81), Expect = 0.22
Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 77/247 (31%)
Query: 1298 EHD---PTSIGDILLNQSKCEF-------------ENENFSKFETLLLR-----AHKVDL 1336
EH PT+ + +Q + +F ++E + E L+ + + V+
Sbjct: 17 EHVLLVPTASF-FIASQLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKFLGYVSSLVE- 73
Query: 1337 IIEKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEI-NTNISKDIHSLITQARQWEQN- 1394
+ G++ L L E+E N DIH+L + Q
Sbjct: 74 ----------PSKV----GQFDQV-LNLCLTEFENCYLEGN---DIHALAAKLLQENDTT 115
Query: 1395 -GEFYNAVECYLKIKNVDVNLMVK-----ILNEVT------------Q-LTLKYLNHDQS 1435
+ ++ Y+ + + K + V Q T Y +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 1436 -YKILPSLVPKLMEFKQYDLAVRVYLNIDMVK---EAVDIFIYTQNWNKARKLCAELKP- 1490
Y+ LV L++F L+ + +D K + ++I W + P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI----LEWLEN----PSNTPD 227
Query: 1491 -EYLSYV 1496
+YL +
Sbjct: 228 KDYLLSI 234
Score = 34.6 bits (79), Expect = 0.36
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 50/189 (26%)
Query: 42 NGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWL 101
NG K+ VV G S L + + K ++ F ++ + +L
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRK-------AKAPSGLDQSRI---PFSERKLKFSNRFL 421
Query: 102 ADGPIIYGQSDGKIKAA--HVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI-VR 158
P+ A+ H + L ++ + ++ V D I V
Sbjct: 422 ---PV----------ASPFH-----SHLLVPASDLINK---DLVKNNVSFNAKDIQIPV- 459
Query: 159 YYVTEDASNFDQQQGRV--------VQHPVP-PYALSWPAGYILAAGSDRI-----VTIY 204
Y T D S+ G + ++ PV + A +IL G +T
Sbjct: 460 -YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 205 ESDGRVHRI 213
DG R+
Sbjct: 519 NKDGTGVRV 527
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 60.9 bits (147), Expect = 1e-09
Identities = 33/262 (12%), Positives = 62/262 (23%), Gaps = 16/262 (6%)
Query: 53 AFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKV-ICNKFIQQCPVTTMVWLADGPIIYGQS 111
+ D D + +L D + N + ++
Sbjct: 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYP 102
Query: 112 DGKIKAAHVKANKTQTLYASNSFVVALCL----NVRGAGVLSGHADGSIVRYYVTEDASN 167
+I K NK +S + + V + G+I + ED S
Sbjct: 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI-GFQSYEDDSQ 161
Query: 168 FDQQQGRVVQHPVPPYALSW-PAGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKER 224
+ + V + +LA S D I+ +Y S + E
Sbjct: 162 YIVHSA---KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR-FPVDE--EA 215
Query: 225 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI 284
+ + +G +VV + F G +
Sbjct: 216 KIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275
Query: 285 ACGGLCGSVELFESVLKRT-IW 305
+ K+T W
Sbjct: 276 IAYSNESNSLTIYKFDKKTKNW 297
Score = 54.0 bits (129), Expect = 2e-07
Identities = 42/347 (12%), Positives = 97/347 (27%), Gaps = 58/347 (16%)
Query: 109 GQSDGKIKAAHVKANKTQTLYASNSFVVALC------LNVRGAG----VLSGHADGSIVR 158
+ GK+KA K L + ++ + LN + DG++
Sbjct: 3 HMARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHF 62
Query: 159 YYV--TEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFD 215
+ ++ + R P P +L +TI + +V R +
Sbjct: 63 TQLKDSKTITTITTPNPRTGGE-HPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121
Query: 216 YTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISA 274
E + + + + + I ++ + + S+
Sbjct: 122 --VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV----HSAKSDVEYSS 175
Query: 275 LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI 334
+D +A G ++++ SP Q + E
Sbjct: 176 GVLHKDSLLLALYSPDGILDVYNLS---------------SPDQASSRFPVDEEA----- 215
Query: 335 LKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTV 394
+I +V N ++V T++ DL +++ + + F TV
Sbjct: 216 -------KIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPE----FKTGTV 264
Query: 395 CLVFNA-GELSIIEYGNNEILTCVSIKLFAWSPSKSVWEEQPNKTIP 440
+ G+ I + S+ ++ + W + +
Sbjct: 265 TYDIDDSGKNMIAYSNESN-----SLTIYKFDKKTKNWTKDEESALC 306
Score = 48.2 bits (114), Expect = 1e-05
Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 46/219 (21%)
Query: 41 QNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVW 100
+ + DS LA+ D I+ +Y L D+ ++ + + +
Sbjct: 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS--PDQASSRFPVDEEAKIKEVKF 222
Query: 101 LADGPIIYGQSDGKI------KAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADG 154
+G + + D + K A T T+ + V ++ G +++ +
Sbjct: 223 ADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282
Query: 155 SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIF 214
+ + Y + + +W + +SD
Sbjct: 283 NSLTIYKFDKKTK------------------NWTK-------DEESALCLQSDTADFTDM 317
Query: 215 DYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP 253
D G A ++ + D+ + A +P
Sbjct: 318 DVV-------------CGDGGIAAILKTNDSFNIVALTP 343
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell
polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 60.4 bits (147), Expect = 2e-09
Identities = 47/399 (11%), Positives = 123/399 (30%), Gaps = 105/399 (26%)
Query: 806 IYLENNEIHKAIDMY---LKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGE 862
++ + + + +++ ED +L+ Y++L G
Sbjct: 18 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAI----YSQL-----------------GN 55
Query: 863 LYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQI 922
Y D+ AL Y+ ++ + + ++ + G
Sbjct: 56 AYFYLHDYAKALEYHHHDLTLART----------IGDQLGEAK---------ASGNLGNT 96
Query: 923 YEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTA--------LEEEWGDHLIENKQY 974
+ ++A+ C ++ +D++R++N K A + G
Sbjct: 97 LKVLGNFDEAIVCCQR------HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150
Query: 975 NAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYK 1034
+ A+D +++ + ++ + ++ + L + +++
Sbjct: 151 DVGEFPEEVRDALQAAVD------FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204
Query: 1035 TAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEI--------KA-TFIQKCKQ 1085
A HEQ + + + G +KA A + N+G A + +K
Sbjct: 205 DAVI------AHEQRLLIAKEFG--DKA-AERRAYSNLGNAYIFLGEFETASEYYKKTLL 255
Query: 1086 LEEE--NKFKEAERL------YLIIGEPDLAISMFKNQRQYENMIKLVR--NYHPDLLDT 1135
L + ++ EA+ Y ++ + + AI + + + + N
Sbjct: 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY------HLKHLAIAQELNDRIGEG-R 308
Query: 1136 TLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
L N+ QA + + +++ R +
Sbjct: 309 ACWSLGNAYTALGNHDQAMHFA------EKHLEISREVG 341
Score = 55.0 bits (133), Expect = 1e-07
Identities = 52/354 (14%), Positives = 99/354 (27%), Gaps = 108/354 (30%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
GE K GD + ++++ A + E+ +S I L G
Sbjct: 16 GERLCKSGDCRAGVSFFEAA--------VQVGT----EDLKTLSAIYSQL---------G 54
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
Y + ++ KALE + + L R I GD L E K N
Sbjct: 55 NAYFYLHDYAKALEYHH------HDLTLARTI------------GDQLGEAKASGNLGNT 96
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQ--------------------HV 1020
G ++A+ ++ + I + + +K A+
Sbjct: 97 LKVLGNFDEAIVC------CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150
Query: 1021 KTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVD-------------MYHQTGQWEKAYAIA 1066
+ + A Y + + D ++ G + A
Sbjct: 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210
Query: 1067 EQHLNVGEIKATFIQKCKQLEEENKFKEAERL------YLIIGEPDLAISMFKNQRQYEN 1120
EQ L + + E +K E Y+ +GE + A +K
Sbjct: 211 EQRLLIAK------------EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL--- 255
Query: 1121 MIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
+ + L ++Y++A Y+ + + + LN
Sbjct: 256 -LARQLKDRAVEA-QSCYSLGNTYTLLQDYEKAIDYH------LKHLAIAQELN 301
Score = 46.9 bits (112), Expect = 4e-05
Identities = 29/263 (11%), Positives = 67/263 (25%), Gaps = 53/263 (20%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQ 973
G+ + + + + A++ D +
Sbjct: 10 LELALEGERLCKSGDCRAGVSFFEA--------------------AVQVGTEDLKTLSAI 49
Query: 974 YNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDY 1033
Y+ N Y KAL+ + + + I ++ A+ L K + ++
Sbjct: 50 YSQLGNAYFYLHDYAKALEY------HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103
Query: 1034 KTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFK 1093
A ++ +D+ + A N+G + + K K
Sbjct: 104 DEAI------VCCQRHLDISRELN---DKVGEARALYNLGNV---YHAKGKSFGCPGPQD 151
Query: 1094 EAERLYLIIGEPDLAISMFKNQRQYENMIKLVR--NYHPDLLDTTLLHLAQECEESKNYK 1151
E + A+ YE + LV +L N++
Sbjct: 152 VGEFPEEVRDALQAAVDF------YEENLSLVTALGDRAAQG-RAFGNLGNTHYLLGNFR 204
Query: 1152 QAEKYYLDCNEWKLAIKMYRSLN 1174
A + + + + +
Sbjct: 205 DAVIAH------EQRLLIAKEFG 221
Score = 43.8 bits (104), Expect = 4e-04
Identities = 60/412 (14%), Positives = 122/412 (29%), Gaps = 113/412 (27%)
Query: 710 DFGKAI-LYLESLGINKKEAEGMWQ-----NLAEVAIQLHNLHVAEICY-AALG------ 756
D+ KA+ + L + + + + + NL L N A +C L
Sbjct: 62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121
Query: 757 ---DISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEI 813
+ + +G V+ + ++ + + A Y EN +
Sbjct: 122 DKVGEARALY-----NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176
Query: 814 HKAID--------------MYLKLYKWEDALSLAETNNYEYN---ELKKKYIKWLTDTRQ 856
A+ + L + DA+ + + K++
Sbjct: 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA-------HEQRLLIAKEF--------- 220
Query: 857 EDKAGE---------LYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIV 907
DKA E Y G+ +TA YY K ++ L++ V +Q
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----------LKDRAVEAQ-- 268
Query: 908 KGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDH 967
S G Y + EKA++ + K + + +++ D
Sbjct: 269 -------SCYSLGNTYTLLQDYEKAIDYHL------KHLAIAQEL------------NDR 303
Query: 968 LIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQ-H 1026
+ E + + N Y G +++A+ +K ++I + + +K L+
Sbjct: 304 IGEGRACWSLGNAYTALGNHDQAMHF------AEKHLEISREVGDKSGELTARLNLSDLQ 357
Query: 1027 FKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKAT 1078
Y T I S + ++ N+ +K T
Sbjct: 358 MVLGLSYSTNNSIMSENTEIDSSLNGVR------PKLGRRHSMENMELMKLT 403
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat,
response regulator helix-turn-HELX binding, 3-helix
bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 59.5 bits (144), Expect = 5e-09
Identities = 41/404 (10%), Positives = 127/404 (31%), Gaps = 77/404 (19%)
Query: 794 AILNKQFKVAEGIYLENNEIHKAID-----------MYLKLYKWEDALSLAETNNYEYNE 842
I AE + E + ++ M + + L E E
Sbjct: 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQP 81
Query: 843 LKKKYIKWLTDTRQEDK----------AGELYEKEGDHQTALNYYLKANFTSKACNLVQN 892
+ + + G + ++ +A+ ++ KA
Sbjct: 82 RLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA------------ 129
Query: 893 EPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKI 952
E L+ D + + E + K + Y + + +++ R+ ++ ++
Sbjct: 130 ESKLIFVKDRIEKA-------EFFFKMSESYYYMKQTYFSMDYARQ------AYEIYKEH 176
Query: 953 NPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITN 1012
++ + ++ ++++ + A+ ++KA + +
Sbjct: 177 E-----------AYNIRLLQCHSLFATNFLDLKQYEDAI------SHFQKAYSMAEAEKQ 219
Query: 1013 KQDIAQHVKTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVDMYHQTGQWEKAYAIAEQHLN 1071
Q + + + + + Y+ A + + E+ + + + I + H
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY---FLITQIHYK 276
Query: 1072 VGEIK--ATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYH 1129
+G+I + K ++ + + L+ + + + + ++ + +
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLY 335
Query: 1130 PDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL 1173
DL D + +A+ E KN+++A Y+ ++ + +
Sbjct: 336 ADLEDF-AIDVAKYYHERKNFQKASAYF------LKVEQVRQLI 372
Score = 32.5 bits (74), Expect = 1.1
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 44/191 (23%)
Query: 710 DFGKAILYLE-SLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDIST-THFLRET 767
+ AI + + + + + E + + L+N+ +C + + +
Sbjct: 199 QYEDAISHFQKAYSMAEAE-----KQPQLMGRTLYNI---GLCKNSQSQYEDAIPYFKRA 250
Query: 768 IKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMY---LKLY 824
I + E + ++ F + + I+ + +I KA + + +
Sbjct: 251 IAVFEESNILPSLPQAY---------------FLITQ-IHYKLGKIDKAHEYHSKGMAYS 294
Query: 825 -KWEDALSLAETNNY-------EYNELKKKYIKWLTDTRQED-------KAGELYEKEGD 869
K D + L+E E + + +L + Y + +
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKN 354
Query: 870 HQTALNYYLKA 880
Q A Y+LK
Sbjct: 355 FQKASAYFLKV 365
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide
repeat, 3-helix bundle, phosphorelay signa transduction,
phosphatase; 2.19A {Bacillus subtilis}
Length = 378
Score = 58.7 bits (142), Expect = 8e-09
Identities = 54/407 (13%), Positives = 120/407 (29%), Gaps = 86/407 (21%)
Query: 794 AILNKQFKVAEGIY------LENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKY 847
I AE + ++ E + + +Y L + L L + +
Sbjct: 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81
Query: 848 IKWLTDTRQEDKA-------------GELYEKEGDHQTALNYYLKANFTSKACNLVQNEP 894
+ L K G + ++ A+ YY +A E
Sbjct: 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA------------EK 129
Query: 895 YLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINP 954
L D + + E + K + Y + ++ + +D+ +
Sbjct: 130 ELPFVSDDIEKA-------EFHFKVAEAYYHMKQTHVSMYHIL------QALDIYQNHPL 176
Query: 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQ 1014
+ + A N Y + +KAL + A+++ I N +
Sbjct: 177 YS----------IRTIQSLFVIAGN-YDDFKHYDKAL------PHLEAALELAMDIQNDR 219
Query: 1015 DIAQHVKTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVDMYHQTGQWEKAYAIAEQHLNVG 1073
IA + +A + D + A + + + + V + ++ G
Sbjct: 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV----LFGLSWTLCKAG 275
Query: 1074 EIKA--TFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLV-----R 1126
+ + FI++ K + L+L + ++K + L+ +
Sbjct: 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQA------VYKETVDERKIHDLLSYFEKK 329
Query: 1127 NYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL 1173
N H + A E S +++QA +Y + +K +
Sbjct: 330 NLHAYIEA-CARSAAAVFESSCHFEQAAAFY------RKVLKAQEDI 369
Score = 48.3 bits (115), Expect = 1e-05
Identities = 43/382 (11%), Positives = 111/382 (29%), Gaps = 92/382 (24%)
Query: 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAIN 979
++ + + + Y + ++ K L++
Sbjct: 59 CFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---------TGLLKYYSLFFRGM 109
Query: 980 HYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKI 1039
+ + + +A+ +++A + L +++ + A+ +A+ + +K +
Sbjct: 110 YEFDQKEYVEAI------GYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 1040 Y--------SHCDMHEQIVD-------MYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCK 1084
+H + + Y ++KA E L +
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM---------- 213
Query: 1085 QLEEENKFKEAERL------YLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLL 1138
+ +N A L Y G+ +A+ ++ K+ R PDLL L
Sbjct: 214 --DIQNDRFIAISLLNIANSYDRSGDDQMAVEH------FQKAAKVSREKVPDLLPKVLF 265
Query: 1139 HLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYL 1198
L+ ++ ++A ++ + + + +
Sbjct: 266 GLSWTLCKAGQTQKAFQFI------EEGLDHITARSHKFYKELFLFLQA----------- 308
Query: 1199 WAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLE 1258
+ + ++ E I + ++ K + + +E A V E
Sbjct: 309 -------------VYKETVDERKIHDLLSYFE--------KKNLHAYIEACARSAAAVFE 347
Query: 1259 DNGQFNEAETQFIKANKPKEAI 1280
+ F +A + K K +E I
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDI 369
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 58.0 bits (140), Expect = 8e-09
Identities = 25/223 (11%), Positives = 70/223 (31%), Gaps = 24/223 (10%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALE-EEWGDHLIENK 972
Y KA ++ + E+A + Y + + A E+ G L + +
Sbjct: 37 SEYAKAAVAFKNAKQLEQAKDAYLQ------EAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 973 QYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKD 1032
+ A+ + KA ++ A L + K + + +
Sbjct: 91 RMPEAVQYI------EKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAV 144
Query: 1033 YKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGE-------IKATFIQKCKQ 1085
++ E++ ++ + + + ++++A A ++ ++ + I +
Sbjct: 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204
Query: 1086 LEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNY 1128
+ A++ +I F + L++ Y
Sbjct: 205 QLHRADYVAAQKCV----RESYSIPGFSGSEDCAALEDLLQAY 243
Score = 55.7 bits (134), Expect = 5e-08
Identities = 36/250 (14%), Positives = 75/250 (30%), Gaps = 49/250 (19%)
Query: 930 EKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNK 989
+A E K + Y K + K P +A E Y A + A + +
Sbjct: 8 SEAHEHIAKAEKYLKTSFM--KWKPDYDSAASE-----------YAKAAVAFKNAKQLEQ 54
Query: 990 ALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQI 1049
A D + + + + A+ + K ++ A + E+
Sbjct: 55 AKDA------YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI------EKA 102
Query: 1050 VDMYHQTGQWEKAYAIAEQHLNVGEIK---------ATFIQKCKQLEEENKFKEAERLYL 1100
MY + G + A A G++ + Q E E + ++A L
Sbjct: 103 SVMYVENGTPDTA---AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIG 159
Query: 1101 II-------GEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQA 1153
+ D A + + ++ ++ + + L+ L + +Y A
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-----DYVAA 214
Query: 1154 EKYYLDCNEW 1163
+K +
Sbjct: 215 QKCVRESYSI 224
Score = 47.6 bits (113), Expect = 2e-05
Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 26/183 (14%)
Query: 859 KAGELYEKEGDHQTALNYYLKA-NFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYI 917
+ E + A + +A + + Y+ + + + +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120
Query: 918 KAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAA 977
+AG++ E + KA+ Y++ A+ E + A
Sbjct: 121 RAGKLME-PLDLSKAVHLYQQ------------------AAAVFENEERLRQAAELIGKA 161
Query: 978 INHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037
+ K ++A + +K + + + N + DY A+
Sbjct: 162 SRLLVRQQKFDEAAAS------LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 1038 KIY 1040
K
Sbjct: 216 KCV 218
Score = 44.1 bits (104), Expect = 2e-04
Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 31/227 (13%)
Query: 806 IYLENNEIHKAIDMYLKL----YKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAG 861
+ ++ +A D YL+ A+ LK + + +KA
Sbjct: 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ-RMPEAVQYIEKAS 103
Query: 862 ELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQ 921
+Y + G TA +A + +L + + V + E KA +
Sbjct: 104 VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163
Query: 922 IYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHY 981
+ + ++A +K ++ +E ++ K+ A +
Sbjct: 164 LLVRQQKFDEAAASLQK------------------EKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 982 IEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFK 1028
+ A K +++ I ++ ++ L Q +
Sbjct: 206 LHRADYVAAQ------KCVRESYSIPGFSGSED--CAALEDLLQAYD 244
Score = 37.2 bits (86), Expect = 0.033
Identities = 19/175 (10%), Positives = 56/175 (32%), Gaps = 17/175 (9%)
Query: 711 FGKAILYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETI-- 768
+ + + A+ ++ + L + A + + +T
Sbjct: 59 YLQEAEAHANNRSLFHAAK-AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117
Query: 769 ---KIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMYLKLYK 825
+ G++ D + L+ + A F+ E + I KA + ++ K
Sbjct: 118 ALDRAGKLMEP----LDLSKAVHLYQQAA---AVFENEERLRQAAELIGKASRLLVRQQK 170
Query: 826 WEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKA 880
+++A + + + + K+ + T ++ + D+ A ++
Sbjct: 171 FDEAAASLQ----KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221
Score = 36.8 bits (85), Expect = 0.046
Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 40/189 (21%)
Query: 1027 FKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAI----AEQHLNVGEIK------ 1076
K DY +A Y + + Q E+A AE H N +
Sbjct: 26 MKWKPDYDSAASEY------AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAF 79
Query: 1077 ---ATFIQKCKQLEE-ENKFKEAERLYLIIGEPDLAISMFKN------QRQYENMIKLVR 1126
++ +++ E ++A +Y+ G PD A + L +
Sbjct: 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQ 139
Query: 1127 NY--------HPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWED 1178
+ ++ + + +A + MY+ + +
Sbjct: 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL------QKEKSMYKEMENYPT 193
Query: 1179 AYRIALSNG 1187
Y+ ++
Sbjct: 194 CYKKCIAQV 202
Score = 30.2 bits (68), Expect = 5.7
Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 55/230 (23%)
Query: 1060 EKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYE 1119
+ A AE++L K +++ +A + + + A +
Sbjct: 11 HEHIAKAEKYLKTSF----MKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYL------ 60
Query: 1120 NMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYR-SLNLWED 1178
+ + + +K ++QA D A++ + ++ +
Sbjct: 61 ---QEAEAH---------ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108
Query: 1179 AYR-----IALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDF 1233
+AL G+ + + L AV L + A ++
Sbjct: 109 NGTPDTAAMALDRAGK------LM---EPLDLSKAVHLYQQ----------AAAVFE--- 146
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMY 1283
+ E+ K + +L +F+EA K + + Y
Sbjct: 147 -----NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 58.3 bits (141), Expect = 2e-08
Identities = 44/271 (16%), Positives = 86/271 (31%), Gaps = 46/271 (16%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
V FS D ++A +D + ++K + G+K + + V + +D I
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKA--ETGEKLLDIKAH--EDEVLCCAFSSDDSYIA 673
Query: 109 -GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVL--SGHADGSIVRYYVTED 164
+D K+K K T + V + +L +G D + +
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW----- 728
Query: 165 ASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS-DRIVTIYESDG-------RVH 211
D Q H + P +LA+ S D + +++ V
Sbjct: 729 ----DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 212 RIFDYTAPHYKEREFTVACS--SPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNL 269
R F + ++ E V C S G ++V + + + L ++ + + +
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL---------FDIHTSGLLAEI 835
Query: 270 YT-----ISALSWKRDGSRIACGGLCGSVEL 295
+T I + VEL
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Score = 56.4 bits (136), Expect = 8e-08
Identities = 30/266 (11%), Positives = 72/266 (27%), Gaps = 56/266 (21%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
VK ++S D K+ VA + ++ + + + + +
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLF------DIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 854
Query: 107 IY-GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTED 164
S ++ ++ + S+V + + G+ L+ D +I + +
Sbjct: 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW----E 910
Query: 165 ASNFDQQQGRVVQHPVPPYALSWPAGYILAAGS-DRIV---------TIYESDGRVHRIF 214
+ +V ++ A R + Y + +V
Sbjct: 911 TKK-VCKNSAIVLKQEIDVVFQ-ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS--- 965
Query: 215 DYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL---- 269
SP + V G D IK+ E N+ +
Sbjct: 966 ------------CCCL-SPHLEYVAFGDEDGAIKI---------IELPNNRVFSSGVGHK 1003
Query: 270 YTISALSWKRDGSRIACGGLCGSVEL 295
+ + + DG + +++
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQV 1029
Score = 55.6 bits (134), Expect = 1e-07
Identities = 34/265 (12%), Positives = 75/265 (28%), Gaps = 41/265 (15%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIY---------KLGDDWGDKKVICNKFIQQCPVTTMV 99
V FSPD LA +D + ++ + + V
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 100 WLADGPIIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGVLSGHADGSIV 157
W ADG I + K+ + + + +S + + + + +
Sbjct: 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865
Query: 158 RYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVH 211
++ V H + + + P G S D+ + ++E+
Sbjct: 866 L---------WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916
Query: 212 RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY 270
+A K +E V + V+ ++L + Q +
Sbjct: 917 N----SAIVLK-QEIDVVF-QENETMVLAVDNIRGLQL--IAGKTG----QIDYLPEA-- 962
Query: 271 TISALSWKRDGSRIACGGLCGSVEL 295
+S +A G G++++
Sbjct: 963 QVSCCCLSPHLEYVAFGDEDGAIKI 987
Score = 51.8 bits (124), Expect = 2e-06
Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 55/293 (18%)
Query: 35 IWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN 87
+ ++ + G K V AFS D + +A +D + I+
Sbjct: 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT---------G 689
Query: 88 KFIQQC-----PVTTMVWLADG---PIIYGQSDGKIKAAHVKANK-TQTLYASNSFVVAL 138
K + V + + G +D +K + + T++ + V
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 139 CLNVRGAGVLSGHADGSIVRYYVT--------EDASNFDQQQGRVVQHPVPPYALSW-PA 189
+ + S ADG++ + V F + V SW
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 190 GYILAAGS-DRIVTIY-ESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I 246
G + + ++++ + G + I H SP V+ +
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHT---GH-HSTIQYCDF-SPYDHLAVIALSQYCV 864
Query: 247 KLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIACGGLCGSVEL 295
+L W + + + + + DGS ++ +
Sbjct: 865 EL---------WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Score = 49.4 bits (118), Expect = 1e-05
Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 32/259 (12%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
V+ + F+ D L + D++I ++ +W + Q V L D ++
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVW----NWQTGDYV-FLQAHQETVKDFRLLQDSRLLS 1060
Query: 109 GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASN 167
DG +K +V + + V++ ++ S AD + +
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW----SFDL 1116
Query: 168 FDQQQGRVVQHPVPPYALSW-PAGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYK-- 222
+ H ++ G +LA G + + I+ SDG++ +
Sbjct: 1117 L-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175
Query: 223 --EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLY----TISALS 276
T C SP + +V +K W + Y + +
Sbjct: 1176 THGGWVTDVCFSPDSKTLVSAG-GYLKW---------WNVATGDSSQTFYTNGTNLKKIH 1225
Query: 277 WKRDGSRIACGGLCGSVEL 295
D G + +
Sbjct: 1226 VSPDFRTYVTVDNLGILYI 1244
Score = 34.8 bits (80), Expect = 0.27
Identities = 28/215 (13%), Positives = 55/215 (25%), Gaps = 28/215 (13%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
VK DS +L D + ++ + ++ + Q V + +D
Sbjct: 1047 VKDFRLLQDS-RLLSWSFDGTVKVW----NVITGRIERDFTCHQGTVLSCAISSDATKFS 1101
Query: 109 -GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSI----VRYYVT 162
+D K L N V ++ G + +G +G I V
Sbjct: 1102 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161
Query: 163 EDASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGSDRI----VTIYESDGRVHRIFDYT 217
+ + H + + P L + + V G + F
Sbjct: 1162 LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVA----TGDSSQTFY-- 1215
Query: 218 APHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 251
+ SP + V + +
Sbjct: 1216 -TN--GTNLKKIHVSPDFRTYVTVDNLGILYI--L 1245
Score = 31.3 bits (71), Expect = 3.1
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77
+K + SPD + I++I ++ +
Sbjct: 1221 LKKIHVSPDFRTYVTVDNLGILYILQVLE 1249
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 55.8 bits (135), Expect = 6e-08
Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 33/266 (12%)
Query: 38 WRGQNGRKSYVVKGLAFSPDSTK-LAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVT 96
+ R V L + P +AV I ++ D +K +T
Sbjct: 69 ASPFDRR----VTSLEWHPTHPTTVAVGSKGGDIILWDY--DVQNKTSFIQGMGPGDAIT 122
Query: 97 TMVW-LADGPIIY-GQSDGKIKAAHVKANKTQTLYASN---SFVVALCLNVRGAGVLSGH 151
M + + ++ G + Q ++ + + ++V + +G
Sbjct: 123 GMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182
Query: 152 ADGSIVRYYV-TEDASNFDQQQGRVVQHPVPPYALSW-PAG-YILAAGS-DRIVTIYE-S 206
+ G ++ + + + +V + P +++A S D V +++
Sbjct: 183 STGRLLLLGLDGHEIFKEKLHKAKV-------THAEFNPRCDWLMATSSVDATVKLWDLR 235
Query: 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS----KSVWEEQ 261
+ + + PH ++ + ++ N I++ +S
Sbjct: 236 NIKDKNSYIAEMPH-EKPVNAAYFNPTDSTKLLTTDQRNEIRV--YSSYDWSKPDQIIIH 292
Query: 262 PNKTIPNLYTISALSWKRDGSRIACG 287
P++ +L I A +W I G
Sbjct: 293 PHRQFQHLTPIKA-TWHPMYDLIVAG 317
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 15/176 (8%)
Query: 126 QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQ-GRVVQHPVPPYA 184
Q S + + + G + + + ++ + V +
Sbjct: 23 QKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPF--IRSLKSYKLHRTASPFDRRV--TS 78
Query: 185 LSW-PAGY-ILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 241
L W P +A GS + +++ D + F + + + + + V
Sbjct: 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP-GDAITGMKFNQFNTNQLFVS 137
Query: 242 SYDN-IKLFAWSPSKSVWEE-QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 295
S L S SV + + Y +S +A G G + L
Sbjct: 138 SIRGATTL--RDFSGSVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLL 189
Score = 40.0 bits (94), Expect = 0.005
Identities = 38/241 (15%), Positives = 66/241 (27%), Gaps = 54/241 (22%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFI----------YKLGDDWGDKKVICNKFIQQCPV 95
Y + S LA S + + KL V
Sbjct: 163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAK---------------V 207
Query: 96 TTMVWLADGPIIY--GQSDGKIK---AAHVKANKT-QTLYASNSFVVALCLN-VRGAGVL 148
T + + D +K ++K + V A N +L
Sbjct: 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267
Query: 149 SGHADGSIVRYYVTEDASNFDQQQG------------RVVQHPVPPYALS--WPAGYILA 194
+ I R Y + D S DQ + HP+ ++ +P +L
Sbjct: 268 TTDQRNEI-RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLL 326
Query: 195 AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP 253
R + IY+ + G + ++ SP+G + G NI + W+
Sbjct: 327 ND-KRTIDIYDANSGGLVHQLR---DPNAAGIISLNKFSPTGDVLASGMGFNILI--WNR 380
Query: 254 S 254
Sbjct: 381 E 381
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 56.1 bits (136), Expect = 7e-08
Identities = 55/329 (16%), Positives = 112/329 (34%), Gaps = 86/329 (26%)
Query: 35 IWAWRGQNGRK-------SYVVKGLAFSP---DSTKLAVAQSDNIIFIYKLGDDW--GDK 82
I + G++G V+G F+ DS K A +D I ++ W
Sbjct: 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI---RV---WDVTTS 284
Query: 83 KVICNKFIQQCPVTTM----VWLADGPIIYGQSDGKIKAAHVKANK-TQTLYASNSFVVA 137
K + + + + V +G II DG + + ++ +T+ N + A
Sbjct: 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344
Query: 138 LCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGS 197
L +N ++SG DG I+ + +S+ Q H +L ++ S
Sbjct: 345 LTVNP----LISGSYDGRIMEW----SSSS--MHQD----HSNLIVSLDNSKAQEYSSIS 390
Query: 198 DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLF-------- 249
D + ++ T + + VA ++ G V+ + D++ +
Sbjct: 391 W--------DDTL-KVNGITKHEF-GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440
Query: 250 ----------AWSPSKS----------------VWEEQPNKTI--PNLYTISALSWKRDG 281
A S S++ + + + + + P S +S
Sbjct: 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500
Query: 282 SRIACGGLCGSVELFESV---LKRTIWKG 307
+ IA G + G + L++ +K + W
Sbjct: 501 TYIAAGDVMGKILLYDLQSREVKTSRWAF 529
Score = 45.7 bits (109), Expect = 1e-04
Identities = 42/276 (15%), Positives = 83/276 (30%), Gaps = 57/276 (20%)
Query: 35 IW-AWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC 93
W + + +V L S + + + D+ + K+ + ++F Q
Sbjct: 361 EWSSSSMHQDHSNLIV-SLDNS-KAQEYSSISWDDTL---KVNG------ITKHEFGSQ- 408
Query: 94 PVTTMVWLADGPIIYGQSDGKIKAAHVKANKT-QTL-YASNSFVVALCLNVRGAGVLSGH 151
DG +D + +++ S V+L N G+ G+
Sbjct: 409 -PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467
Query: 152 ADGSIVRYYVTEDASNFDQQQGRVVQ--HPVPPYALSW-PAGYILAAGS-DRIVTIYESD 207
D + ++ P +S P+ +AAG + +Y+
Sbjct: 468 TIQVF---------KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518
Query: 208 GR--VHRIFDY-TA--------PHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK 255
R + + T+ P K V GS D I + +S +
Sbjct: 519 SREVKTSRWAFRTSKINAISWKPAEK----GANEEEIEEDLVATGSLDTNIFI--YSVKR 572
Query: 256 SVWEEQPNKTIPNLY----TISALSWKRDGSRIACG 287
P K I L ++ L W+ + ++ G
Sbjct: 573 ------PMKIIKALNAHKDGVNNLLWETPSTLVSSG 602
Score = 40.3 bits (95), Expect = 0.005
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 19 FNLDIVRLRSEGNVAGIWAWRGQNGRK-----SYVVKGLAFSPDSTKLAVAQSDNIIFIY 73
N V L + + ++ SP T +A I +Y
Sbjct: 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 515
Query: 74 KL 75
L
Sbjct: 516 DL 517
Score = 39.1 bits (92), Expect = 0.013
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 16/119 (13%)
Query: 182 PYALSW-PAGYILAAGSDRIVTIYESD---GRVHRIFDYTAPHYKEREFTVACSSP--SG 235
LS+ P +A + + D +V + +T H T SP
Sbjct: 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG-H-GSSVVTTVKFSPIKGS 78
Query: 236 QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-----ISALSWKRDGSRIACGG 288
Q + G + + W + + + + IS +SW +G R+ G
Sbjct: 79 QYLCSGDESGKVIV--WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
Score = 38.0 bits (89), Expect = 0.030
Identities = 67/525 (12%), Positives = 146/525 (27%), Gaps = 143/525 (27%)
Query: 43 GRKSYVVKGLAFSP--DSTKLAVAQSDNIIFI--YKLGDDWGDKKVICNKFIQ--QCPVT 96
G S VV + FSP S L + + + + +V Q P++
Sbjct: 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 120
Query: 97 TMVWLADGPIIYGQSDGKIKAAHV----KANKTQTLYASNSFV--VALCLNVRGAGVLSG 150
+ W +G + +G+ N + + + L + R ++
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS-RPMRSMTV 179
Query: 151 HADGSIVRYYVTEDASNFDQQQGRVV--QHPVPPYALSW-P-AGYILAAGS-DRIVTIYE 205
DGS+V Y F + + + P +G + DR ++ ++
Sbjct: 180 GDDGSVVFY----QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235
Query: 206 -SDGR-VHRIFDYTAPHYKEREFTVACSSPS---GQAVVVGSYDN-IKL----------- 248
G + I D P + S Q D I++
Sbjct: 236 GKSGEFLKYIEDDQEPVQ-----GGIF-ALSWLDSQKFATVGADATIRVWDVTTSKCVQK 289
Query: 249 --------------FAWSPSKS-----------VWEEQPNKTIPNLY----TISALSWKR 279
+ + +E ++ + + I+AL+
Sbjct: 290 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-- 347
Query: 280 DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIY---VSPSQVLVKPLSGESKGRGV--- 333
+ + G G + + S ++ + +I S +Q S S +
Sbjct: 348 --NPLISGSYDGRIMEWSS---SSMHQDHSNLIVSLDNSKAQEYS---SI-SWDDTLKVN 398
Query: 334 -ILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNV 392
I K ++G + + + V D LL+ L +G
Sbjct: 399 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLI-----------LQSFTGD--------- 438
Query: 393 TVCLVFNAGELSIIEYGNNEILTCVSIKLFAWSP------SKS------VWEEQPNKTI- 439
+ + + + + + + + + + + +
Sbjct: 439 ---------IIKSVRLNSPGSAVSL-----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 484
Query: 440 -PNLYTISALSWKRDGSRIACGGLCGSVELFESV---LKRTIWKG 480
P S +S + IA G + G + L++ +K + W
Sbjct: 485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 529
Score = 34.9 bits (81), Expect = 0.26
Identities = 39/278 (14%), Positives = 69/278 (24%), Gaps = 55/278 (19%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI--QQCPVTTMVW--LADG 104
L++ P + +A + + DD K +F VTT+ + +
Sbjct: 21 TTHLSYDPTTNAIAYPCGKSA--FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 78
Query: 105 PII-YGQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADG--SIV- 157
+ G GK+ K + + + V A I
Sbjct: 79 QYLCSGDESGKVIVWGWTFDKESNS--------------VEVNVKSEFQVLAGPISDISW 124
Query: 158 ----RYYVTEDASN------FDQQQGRVVQ----HPVPPYALSW-PAGYILAA--GSDRI 200
R G + H A + + + G D
Sbjct: 125 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 184
Query: 201 VTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE 259
V Y+ D T V S SG+ V+ D I +
Sbjct: 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC--FDGKSG--- 239
Query: 260 EQPNKTIPN-LYTISALSW---KRDGSRIACGGLCGSV 293
+ K I + + + D + A G ++
Sbjct: 240 -EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 276
Score = 31.4 bits (72), Expect = 2.7
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 21/91 (23%)
Query: 38 WRGQNGRKSYVVKGLAFSPDS----------TKLAVAQSDNIIFIYKLGDDWGDKKVICN 87
W + + + +++ P +A D IFIY + K +
Sbjct: 527 WAFRTSK----INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR--PMKII--- 577
Query: 88 KFIQ--QCPVTTMVWLADGPIIYGQSDGKIK 116
K + + V ++W ++ +D IK
Sbjct: 578 KALNAHKDGVNNLLWETPSTLVSSGADACIK 608
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 54.9 bits (131), Expect = 1e-07
Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 37/279 (13%)
Query: 18 VFNLDIVRLRSEGNVAGIWAWRGQNGRK---SYVVKGLAFSPDSTKLAV----AQSDNII 70
+F + ++++ G + + LA S D+ L+ ++ +II
Sbjct: 61 IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120
Query: 71 FIYKLGDDWGDKKVICNKFIQQC-------PVTTMVWLADGPIIY--GQSDGKIKAAHVK 121
+ + + K F V M W P + +DG I V
Sbjct: 121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180
Query: 122 ANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVT-EDASNFDQQQGRVVQHP 179
S V ++C + +G + G +G++V+Y T ++ HP
Sbjct: 181 ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHP 240
Query: 180 VPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKE--REFTVACSS---- 232
V + W + T+ S V + + E F C
Sbjct: 241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE 300
Query: 233 ----------PSGQAVVVGSY--DNIKLFAWSPSKSVWE 259
V+ S + + A + WE
Sbjct: 301 RQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWE 339
Score = 47.2 bits (111), Expect = 3e-05
Identities = 42/336 (12%), Positives = 99/336 (29%), Gaps = 69/336 (20%)
Query: 131 SNSFVVALCLNVRGAGVLSGHADGSIVRYYVTED-----------ASNFDQQQGRVVQHP 179
S+ V+ N G V +G A G + + T++ D+ QG +V
Sbjct: 39 SSLLAVS---NKYGL-VFAGGASGLQI--FPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92
Query: 180 VPPYALSWP------AGYILAAGSDRIVTIY-------ESDGRVHRIFDYTAPHYKEREF 226
P + L+ + ++++ I+ + E+ + +
Sbjct: 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV 152
Query: 227 TVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC 286
+P+ ++V + + +++ + T+P+ ++++ W G ++A
Sbjct: 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQLAV 209
Query: 287 GGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDV 346
G G+V + + + + P +S + + DV
Sbjct: 210 GKQNGTVVQYLP-------TLQEKKVIPCPPFY----------------ESDHPVRVLDV 246
Query: 347 AIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSII 406
+G + + L + L P F N + +
Sbjct: 247 LWIGTYVFAIVYAAADGTLETSP--DVVMALLPKKEEKHPEIFVNFM-EPCYGSCTERQH 303
Query: 407 EYGNNEIL----------TCVSIKLFAWSPSKSVWE 432
Y + I + + A + WE
Sbjct: 304 HYYLSYIEEWDLVLAASAASTEVSILARQSDQINWE 339
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 53.8 bits (130), Expect = 2e-07
Identities = 50/285 (17%), Positives = 87/285 (30%), Gaps = 79/285 (27%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
+ A++ D T++A+ +++ + IY + K + ++ VT + W D
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIY----EKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 66
Query: 107 IY-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVR----GAGVLSGHADGSI-V 157
I +D T + N VR G I +
Sbjct: 67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC----VRWAPNEKKFAVGSGSRVISI 122
Query: 158 RYYVTEDASNFDQQQGRVVQHPVPP-----YALSW-PAGYILAAGSDRIVTIYESDGRVH 211
Y+ E V +H P +L W P +LAAGS D +
Sbjct: 123 CYFEQE-------NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--------DFKC- 166
Query: 212 RIFD-YTAPHYKEREFTVACS-----------------------SPSGQAVVVGSYDN-I 246
RIF Y + T S S +G V S+D+ +
Sbjct: 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
Query: 247 KLFAWSPSKSVWEEQPNKTIPNLYT----ISALSWKRDGSRIACG 287
L + + L + + A+++ + S +A G
Sbjct: 227 CL---------ADADKKMAVATLASETLPLLAVTFITESSLVAAG 262
Score = 38.0 bits (89), Expect = 0.025
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 290
+P+ + VGS I + + W + K P T+ +L W + +A G
Sbjct: 105 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 291 GSVELFESVLKRTIWK-GKFEMIYVSPSQVLVKPLSG 326
+F + +K + P L+ S
Sbjct: 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200
Score = 33.8 bits (78), Expect = 0.42
Identities = 30/259 (11%), Positives = 72/259 (27%), Gaps = 59/259 (22%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
V L + P+S LA D ++ A +
Sbjct: 145 VLSLDWHPNSVLLAAGSCDF---------------------------KCRIFSAYIKEVE 177
Query: 109 GQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASN 167
+ + + + +S +V +C + G+ V D ++ +
Sbjct: 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV---CL------ 228
Query: 168 FDQQQGRVVQ----HPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYK 222
D + V +P A+++ ++AAG D ++ D ++ +
Sbjct: 229 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL---SFGGRL 285
Query: 223 EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYT--ISALSWKRD 280
+ + + + + +L+ +S +S
Sbjct: 286 DVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGAGLDSLHKNSVSQISVLSG 337
Query: 281 G----SRIACGGLCGSVEL 295
G S+ G+ G + +
Sbjct: 338 GKAKCSQFCTTGMDGGMSI 356
Score = 31.1 bits (71), Expect = 3.6
Identities = 19/125 (15%), Positives = 31/125 (24%), Gaps = 32/125 (25%)
Query: 178 HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFT-------- 227
P +W +A + V IYE + E
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS---------GNKWVQVHELKEHNGQVTG 57
Query: 228 VACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGS 282
V + P +V D N + W+ W K + + W +
Sbjct: 58 VDWA-PDSNRIVTCGTDRNAYV--WTLKGRTW-----KPTLVILRINRAARCVRWAPNEK 109
Query: 283 RIACG 287
+ A G
Sbjct: 110 KFAVG 114
Score = 30.7 bits (70), Expect = 3.8
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIAC 286
+ + + ++ + + + S + W + + L ++ + W D +RI
Sbjct: 17 NKDRTQIAICPNNHEVHI--YEKSGNKWVQ-----VHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 287 GG 288
G
Sbjct: 70 CG 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 53.0 bits (126), Expect = 6e-07
Identities = 26/267 (9%), Positives = 73/267 (27%), Gaps = 33/267 (12%)
Query: 53 AFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWL-------ADGP 105
+ + + I I+K+ + V + W G
Sbjct: 168 PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGC 227
Query: 106 IIYGQSDGKIKAAHVKANKTQTLY----------ASNSFVVALCLNVRGAGVL-SGHADG 154
+ + +G I + N T S + + + + G +G
Sbjct: 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNG 287
Query: 155 SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAG--YILAAGS-DRIVTIYESDGRVH 211
+ + +T+ +V + + ++ +++ + D I+ + +
Sbjct: 288 FVAEFDLTD--PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF--NPKDI 343
Query: 212 RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY 270
T ++ P + + + ++ + + +
Sbjct: 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA------FAVHPLVSRE 397
Query: 271 -TISALSWKRDGSRIACGGLCGSVELF 296
TI+A+ R + G GS+ +
Sbjct: 398 TTITAIGVSRLHPMVLAGSADGSLIIT 424
Score = 30.6 bits (68), Expect = 4.9
Identities = 15/151 (9%), Positives = 38/151 (25%), Gaps = 26/151 (17%)
Query: 35 IWAWRGQNGRKSYVVKG-------LAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN 87
+ A + + + + S + +D + I + + +
Sbjct: 379 LRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT----NAARRLLHGI 434
Query: 88 KFIQQCPVTTMVWLADGPIIYGQSDGKIKAAH--------VKANKTQTLYASNSFVVAL- 138
K + +W D Y D K + V + A +
Sbjct: 435 KNSSATQKSLRLWKWD----YSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTK 490
Query: 139 -CLNVRGAGVL-SGHADGSIVRYYVTEDASN 167
G ++ G + Y++ + +
Sbjct: 491 WNETSAGGKCYAFSNSAGLLTLEYLSLEHHH 521
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 51.7 bits (123), Expect = 1e-06
Identities = 37/340 (10%), Positives = 94/340 (27%), Gaps = 55/340 (16%)
Query: 40 GQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMV 99
+ ++ ++ + F+ LA + I+ + I + + V +
Sbjct: 22 DDDVAEADIISTVEFNHSGELLATGDKGGRVVIF----QQEQENKIQSHSRGEYNVYSTF 77
Query: 100 WLADGPIIYGQS---DGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI 156
+ Y +S + KI + A L D +I
Sbjct: 78 QSHEPEFDYLKSLEIEEKINK------------------IRWLPQKNAAQFLLSTNDKTI 119
Query: 157 VRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDY 216
+ ++E + R + + + + + + +
Sbjct: 120 KLWKISE-------RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172
Query: 217 TAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS-----PSKSVWEEQPNKTIPNLYT 271
H + + + I L W S ++ + +P
Sbjct: 173 ANAH--TYHINSISINSDYETYLSADDLRINL--WHLEITDRSFNIVDIKPANMEELTEV 228
Query: 272 ISALSW-KRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG 330
I+A + + G++ L + + S++ +P ++
Sbjct: 229 ITAAEFHPNSCNTFVYSSSKGTIRL---------CDMRASALCDRHSKLFEEPEDPSNRS 279
Query: 331 RGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR 370
S+ I+DV + RY++ R ++ + DL+
Sbjct: 280 ----FFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM 315
Score = 41.7 bits (97), Expect = 0.002
Identities = 40/308 (12%), Positives = 81/308 (26%), Gaps = 61/308 (19%)
Query: 8 DVSSNVLQDDVFNLDIVRLRSEGNVAGIWAW--RGQNGRKSYVVKGLAFSPDSTKLAVAQ 65
+D + + A R +Y + ++ + D A
Sbjct: 137 KEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA- 195
Query: 66 SDNIIFIYKL--GDDWGDKKVICNKFIQ--QCPVTTMVWLADGP--IIYGQSDGKIKAAH 119
D I ++ L D + I ++ +T + + +Y S G I+
Sbjct: 196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255
Query: 120 VKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHP 179
++A+ ALC D + ED SN
Sbjct: 256 MRAS-------------ALC-------------DRHSKLFEEPEDPSNRSFFSE----II 285
Query: 180 VPPYALSW-PAGYILAAGSDRIV-------------TIYESDGRVHRIFDYTAPHYKERE 225
+ + +G + V T + ++ +
Sbjct: 286 SSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK 345
Query: 226 FTVACSSPSGQAVVVGSYDN-IKLF-AWSPSKSVWEEQPNKT-----IPNLYTISALSWK 278
F C + S V+ GSY+N ++F + E + ++ K
Sbjct: 346 FEC-CWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404
Query: 279 RDGSRIAC 286
+D +
Sbjct: 405 KDEISVDS 412
Score = 34.7 bits (79), Expect = 0.25
Identities = 44/298 (14%), Positives = 87/298 (29%), Gaps = 53/298 (17%)
Query: 271 TISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG 330
IS + + G +A G G V +F+ + I V S E +
Sbjct: 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR-----GEYNVYSTFQSHEPEF 84
Query: 331 RGVILKSQYGYE-ITDVAIM--GNDRYLVARTPD-TLLLGDLHRNLLSEVLWPDSGRNEK 386
LKS E I + + N + T D T+ L + + + +
Sbjct: 85 D--YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGR 142
Query: 387 FYFDNVTVCLVF----------NAGELSIIEYGNNEILTCVSI----KLFA--------- 423
+ L A I + + +SI + +
Sbjct: 143 YRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINL 202
Query: 424 WS-----PSKSVWEEQPNKTIPNLYTISALSW-KRDGSRIACGGLCGSVELFESVLKRTI 477
W S ++ + +P I+A + + G++ L
Sbjct: 203 WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL--------- 253
Query: 478 WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTLLT 535
+ + S++ +P ++ S+ I+DV + RY++ R L+
Sbjct: 254 CDMRASALCDRHSKLFEEPEDPSNRS----FFSEIISSISDVKFSHSGRYMMTRDYLS 307
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 51.3 bits (123), Expect = 2e-06
Identities = 50/393 (12%), Positives = 113/393 (28%), Gaps = 91/393 (23%)
Query: 35 IWAWRGQ-----NGRKSYVVKGLAFSPDSTK-LAVAQSDNIIFIYKLGDDWGDKKVICNK 88
+ RG+ + + A SP T L +I K+ W K++I +
Sbjct: 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVI---KI---WNLKEIIVGE 100
Query: 89 FIQQC-------PVTTMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCL 140
VT + + + DG+I V + ++ + +
Sbjct: 101 VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160
Query: 141 NVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRI 200
N++ + Y V A +++ +L A ++
Sbjct: 161 NLKN---FGKNE------YAVRMRAFVNEEKS-------------------LLVALTN-- 190
Query: 201 VTIYESDGRVHRIFDYTAP--------HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 251
RV IFD + + C +++G+ I + W
Sbjct: 191 ------LSRV-IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDI--W 241
Query: 252 -----SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE---SVLKRT 303
+S W + I ++ ++ + G + ++ +
Sbjct: 242 DIRFNVLIRS-WSFGDHAPITHVEVCQFYG--KNSVIVVGGSSKTFLTIWNFVKGHCQYA 298
Query: 304 IW--KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPD 361
+ M + P + ++ L+ L + ND+ L+
Sbjct: 299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS---------NDKILLTDEAT 349
Query: 362 -TLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVT 393
++++ L+ S+ + S ++ F VT
Sbjct: 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382
Score = 37.9 bits (88), Expect = 0.031
Identities = 23/270 (8%), Positives = 61/270 (22%), Gaps = 66/270 (24%)
Query: 37 AWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN-KFIQQCPV 95
+N + V + + L + + II I+ D +I + F P+
Sbjct: 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW----DIRFNVLIRSWSFGDHAPI 260
Query: 96 TTMVWLADGP-----IIYGQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGV 147
T + ++ G S + K + S+ G+
Sbjct: 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFV--KGHCQYAFINSDEQPSMEHFLPIEKGL 318
Query: 148 LSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESD 207
E+ + + + +S IL +
Sbjct: 319 ---------------EELNFCGIRSLNALS------TISVSNDKILLTDE--------AT 349
Query: 208 GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVW-EEQPNKTI 266
+ +F + V S + + + ++ + +
Sbjct: 350 SSI-VMFSL---NELSSSKAVISPSRFSDVFIPTQV--------TANLTMLLRKMKRTST 397
Query: 267 PNLYTIS---------ALSWKRDGSRIACG 287
++ + + +
Sbjct: 398 HSVDDSLYHHDIINSISTCEVDETPLLVAC 427
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 50.3 bits (121), Expect = 2e-06
Identities = 42/225 (18%), Positives = 73/225 (32%), Gaps = 30/225 (13%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW----GDKKVICNKFIQ--QCPVTTMVWLA 102
VKG+A+S D LA D + + W ++ C +Q V ++W
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSV---WI---WETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 103 DGPIIY-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCL--NVRGAGVLSGHADGSI 156
++ D ++ L V + + SG D ++
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 157 VRYYVTEDASNFDQQQGRVVQ-----HPVPPYALSW-PAGYILAAGSDRIVTIY-ESDGR 209
R + DQQ+ H Y ++W G I + G+D ++ +Y E DG
Sbjct: 224 -RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282
Query: 210 VHRIFDYTAPHYKEREFTVACSSPSGQAVVV-GSYDN-IKLFAWS 252
H V +G+ ++ G D + WS
Sbjct: 283 WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF--WS 325
Score = 31.8 bits (73), Expect = 1.8
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIAC 286
P + GS+D+ + + W+ +S + + + ++W DG +A
Sbjct: 67 RPHTSLLAAGSFDSTVSI--WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 287 GG 288
Sbjct: 125 CS 126
Score = 31.4 bits (72), Expect = 2.4
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIAC 286
S + GS D IKL S + I +++W+ S +A
Sbjct: 21 DFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLD---ETAHKKAIRSVAWRPHTSLLAA 75
Query: 287 GG 288
G
Sbjct: 76 GS 77
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum,
protein folding, tetratricopeptiderepeat, J domain,
unfolded protein respons; 3.00A {Homo sapiens} PDB:
2y4u_A
Length = 450
Score = 50.8 bits (122), Expect = 3e-06
Identities = 47/351 (13%), Positives = 106/351 (30%), Gaps = 72/351 (20%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
+ L+ ++ +A D + K L + N E + + + ++
Sbjct: 103 LLLKQGKLDEAEDDFKK------VLKSNPSENEEKEAQSQ--LIKSDEMQRLRSQALNAF 154
Query: 866 KEGDHQTALNYYLKA-----NFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKA- 919
GD+ A+ + K + E +S + +A
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214
Query: 920 ---GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALE-----------EEWG 965
+Y ++E +L R +C+ K++ + E
Sbjct: 215 YKISTLYYQLGDHELSLSEVR------ECL----KLDQDHKRCFAHYKQVKKLNKLIESA 264
Query: 966 DHLIENKQYNAAINHYIEAGK-------------NNKALDTSIKAKQWKKAVQIL-QVIT 1011
+ LI + +Y A + Y K K ++ +A+++ +V+
Sbjct: 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH-CFSKDEKPVEAIRVCSEVLQ 323
Query: 1012 NKQDIAQHVKTLAQHFKTVKDYKTAEKIY--------SHCDMHEQIVDMYHQTGQ----- 1058
+ D +K A+ + + Y A + Y + + E + Q
Sbjct: 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 1059 WEKAYAIAEQHLNVGEIKATFIQKCKQL-----EEENKFKEAERLYLIIGE 1104
+ K + EI + + Q + E + K+AE+ ++ I
Sbjct: 384 YYKILGVKRNA-KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Score = 31.2 bits (71), Expect = 3.2
Identities = 42/416 (10%), Positives = 112/416 (26%), Gaps = 96/416 (23%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
G+ G AL+ + A + + +Y +
Sbjct: 33 GKKLLAAGQLADALSQF------HAAVDGDPDNY-------------------IAYYRRA 67
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
++ +++ AL K I ++ A + G L++ + + A +
Sbjct: 68 TVFLAMGKSKAALPDL------TKVI----QLKMDFTAARLQR-GHLLLKQGKLDEAEDD 116
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY 1040
+ + K+N + + +A+ +Q + ++ A + + + ++
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ---ALNAFGSGDYTAAIAFLDKILEVC 173
Query: 1041 SHC-DMHEQIVDMYHQTGQWEKAYAIAEQ--HLNVGEIKATFIQKCKQLEEENKFKEAER 1097
++ E + + + G+ KA + + L +A F + + + +
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA-FYKISTLYYQLGDHELSLS 232
Query: 1098 LYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157
+ + ++ ++ K V+ L+ A+E Y A Y
Sbjct: 233 EV------RECLKLDQDHKRCFAHYKQVKKL------NKLIESAEELIRDGRYTDATSKY 280
Query: 1158 LDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSL 1217
+ +K S+ + + ++
Sbjct: 281 ------ESVMKTEPSIA---EYTVRSKERICH---------------------CFSKDEK 310
Query: 1218 LESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
I + M+ A ++EA + A
Sbjct: 311 PVEAIR----------VCSEV-LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 48.1 bits (114), Expect = 4e-06
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 20/166 (12%)
Query: 702 FGTAVHDSDFGKAILYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTT 761
F A+ + A+ + L W+ L + A+ N +AE+ Y
Sbjct: 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKL 66
Query: 762 HFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMYL 821
FL SK NI A + F NN + ++
Sbjct: 67 SFLYLVTGDVNKLSKMQNI-------------AQTREDFGSMLLNTFYNNSTKERSSIFA 113
Query: 822 KLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKE 867
+ A ++A+ +++ Q+ + +
Sbjct: 114 EGGSLPLAYAVAKA--NGDEAAASAFLEQAEVDEQDVTLPDQMDAS 157
Score = 30.0 bits (67), Expect = 4.8
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 6/149 (4%)
Query: 1140 LAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLW 1199
A++ +S +++ + L LA +Y++ + ++ + L G + + +
Sbjct: 27 EAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA 86
Query: 1200 AKSLGGDSAVRLLNRLSL--LESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVL 1257
D LLN + S + A+ +AK + A V
Sbjct: 87 QTR--EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVD 144
Query: 1258 EDNGQFNEAETQFIKANKPKEAISMYIHN 1286
E + + + IS +
Sbjct: 145 EQDVTLPDQMDA--SNFVQRPVISKPLEK 171
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR repeat,
ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A
3fp4_A 3lca_A
Length = 537
Score = 49.3 bits (118), Expect = 9e-06
Identities = 62/485 (12%), Positives = 131/485 (27%), Gaps = 111/485 (22%)
Query: 815 KAIDMYLKLYKWEDALSLAETNNYEY-NELKKKYIKWLTDTRQEDKAGELYEKEGDHQTA 873
+ L+ + Y +LK + G + + A
Sbjct: 5 NGEPDIAQ------LKGLSPSQRQAYAVQLKNR--------------GNHFFTAKNFNEA 44
Query: 874 LNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKAL 933
+ YY A ++ +P Y Y T + EK +
Sbjct: 45 IKYYQYA---------IELDP---NEP-------------VFYSNISACYISTGDLEKVI 79
Query: 934 ECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDT 993
E K + +I P + AL + A+ N
Sbjct: 80 EFT------TKAL----EIKPDHSKALLRR-ASANESLGNFTDAMFDLSVLSLNGDFDGA 128
Query: 994 SIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMY 1053
SI+ ++ + + +++++ +Q + + I+ V
Sbjct: 129 SIEPML-ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS----HLEVSSV 183
Query: 1054 HQTGQWEKAYAIAEQHLNVGEIKAT---FIQKCKQLEEENKFKEAERLYLIIGE--PDLA 1108
+ + ++ AYA+ L + + + + + + A
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243
Query: 1109 I------SMFKNQRQYENMIKLVR---NYHPDLLDTTLLHLAQECEESKNYKQAEKYYLD 1159
+ + + L++ N HP + + LA + +N ++ K++
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFF-- 299
Query: 1160 CNEWKLAIKMYRSLNLWEDAYR---IALSNGGQ--EAVEPVVYLWAKSLGGDSAV----- 1209
+ A+ + Y A E + A+SL ++
Sbjct: 300 ----QKAVDLNPEY---PPTYYHRGQMYFILQDYKNAKE--DFQKAQSLNPENVYPYIQL 350
Query: 1210 -RLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAET 1268
LL + + F L EV +A +L D G F+ A
Sbjct: 351 ACLLYKQGKFTESEA----------FFNET-KLKFPTLPEVPTFFAEILTDRGDFDTAIK 399
Query: 1269 QFIKA 1273
Q+ A
Sbjct: 400 QYDIA 404
Score = 47.0 bits (112), Expect = 5e-05
Identities = 21/223 (9%), Positives = 65/223 (29%), Gaps = 43/223 (19%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
+ + + ++ + + T E+
Sbjct: 353 LLYKQGKFTESEAFFNE------TKLKFPTLPEVPTFF-----------------AEILT 389
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEF 925
GD TA+ Y A + E + H + ++
Sbjct: 390 DRGDFDTAIKQYDIA---------KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440
Query: 926 TNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAG 985
+ A++ K +++P++ A ++ ++ + AI + ++
Sbjct: 441 EEKFNAAIKLL------TKAC----ELDPRSEQAKIGL-AQLKLQMEKIDEAIELFEDSA 489
Query: 986 KNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFK 1028
+ +D ++A + +A +I + + I+ ++ ++
Sbjct: 490 ILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYR 532
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat,
protein transport; 2.90A {Saccharomyces cerevisiae} SCOP:
a.118.8.1
Length = 292
Score = 48.5 bits (115), Expect = 1e-05
Identities = 25/203 (12%), Positives = 60/203 (29%), Gaps = 37/203 (18%)
Query: 970 ENKQYNAAINHYIEAGKNNKALDTSIKAKQ-WKKAVQILQVITNKQDIAQHVKTLAQHFK 1028
++ ++ A + ++A + A + KA + N+ + + FK
Sbjct: 29 DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK 88
Query: 1029 TVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEE 1088
+ + A E + ++ GQ+ + A +GEI +
Sbjct: 89 SGGNSVNAVDSL------ENAIQIFTHRGQFRRG---ANFKFELGEI---------LEND 130
Query: 1089 ENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESK 1148
+ + +A Y +LA + + K + A
Sbjct: 131 LHDYAKAIDCY------ELAGEWYAQDQSVALSNK------------CFIKCADLKALDG 172
Query: 1149 NYKQAEKYYLDCNEWKLAIKMYR 1171
Y +A Y + + ++ +
Sbjct: 173 QYIEASDIYSKLIKSSMGNRLSQ 195
Score = 47.3 bits (112), Expect = 2e-05
Identities = 35/265 (13%), Positives = 77/265 (29%), Gaps = 37/265 (13%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTA--LEEEWGDHLIEN 971
+ ++A IY E A + + K D +K ++ E
Sbjct: 38 DLCVQAATIYRLRKELNLAGDS------FLKAADYQKKAGNEDEAGNTYVEA-YKCFKSG 90
Query: 972 KQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVI--TNKQDIAQHVKTLAQHFKT 1029
A++ A+ Q+++ + + D+ + K + +
Sbjct: 91 GNSVNAVDSL------ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144
Query: 1030 VKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEE 1089
+ Y + + + D+ GQ+ +A I + + K
Sbjct: 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY--- 201
Query: 1090 NKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYH--PDLLDTTLLHLAQECEES 1147
F + L + A + + + R + L+D A +S
Sbjct: 202 --FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID------AVNEGDS 253
Query: 1148 KNYKQAEKYY-----LDCNEWKLAI 1167
+ + K + LD +WK+ I
Sbjct: 254 EQLSEHCKEFDNFMRLD--KWKITI 276
Score = 40.4 bits (94), Expect = 0.003
Identities = 38/318 (11%), Positives = 83/318 (26%), Gaps = 71/318 (22%)
Query: 844 KKKYIKWLTDTRQE--DKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHD 901
++K + + ++A +L + A Y + A
Sbjct: 18 SSGFMKLFSGSDSYKFEEAADLCVQ------AATIYRLRKELNLAG-------------- 57
Query: 902 VVSQIVKGLIKNESYIKAGQIYEFTNEN-------EKALECYRKGKVYDKCIDLTRKINP 954
+S++KA + +A +C++ G +D
Sbjct: 58 ------------DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI- 104
Query: 955 KNVTALEEEWGDHLIENKQYNAAINHYIEAGKN--NKALDTSIKAKQWKKAVQILQVITN 1012
Q+ N E G+ N D + ++ A + +
Sbjct: 105 -----------QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153
Query: 1013 KQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNV 1072
+ A Y A IYS + + + Q + L
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLSQWSLKDYFLKKGLCQLAA 212
Query: 1073 GEIKAT------FIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQ-RQYENMIKLV 1125
+ A + + + + L + E D ++++N ++L
Sbjct: 213 TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS--EQLSEHCKEFDNFMRL- 269
Query: 1126 RNYHPDLLDTTLLHLAQE 1143
D T+L+ +E
Sbjct: 270 -----DKWKITILNKIKE 282
Score = 39.2 bits (91), Expect = 0.007
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 31/159 (19%)
Query: 800 FKVAEGIYLENNEIHK-------AIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLT 852
F A + + A + +A+ E ++ ++
Sbjct: 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE----NAIQIFTHRGQFRR 115
Query: 853 DTRQEDKAGELYEKE-GDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLI 911
+ + GE+ E + D+ A++ Y A E Y + +S
Sbjct: 116 GANFKFELGEILENDLHDYAKAIDCYELAG-----------EWYAQDQSVALS------- 157
Query: 912 KNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTR 950
N+ +IK + + +A + Y K L++
Sbjct: 158 -NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 48.2 bits (115), Expect = 2e-05
Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 28/216 (12%)
Query: 35 IWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDD--WGDKKVICNKFIQQ 92
+ + V L +S A +I + ++ + + K +
Sbjct: 298 LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVI---RGNEEVEQDEPLSLQTKELGS 354
Query: 93 C--PVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG 150
++ +G + DG+ A + + FV
Sbjct: 355 VDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWG----PDSNSYALI 410
Query: 151 HADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGR 209
G I Y ++ +++ + G +L SD V ++ +G
Sbjct: 411 DETGQIKYYKNFKEVTSWSVPMHSAIDRLFS--------GALLGVKSDGFVYFFDWDNGT 462
Query: 210 VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN 245
+ R D + K+ + S +G+ V++ + ++
Sbjct: 463 LVRRIDV---NAKDVIW-----SDNGELVMIVNTNS 490
Score = 37.8 bits (88), Expect = 0.036
Identities = 43/285 (15%), Positives = 80/285 (28%), Gaps = 86/285 (30%)
Query: 624 NILNYCTFVQWLPGSDVVVAQSRHNACVWYNIDTPDRITQFPVRGDIIDVIRENGQSEIL 683
N LNY G H + + R + + +
Sbjct: 553 NRLNYF------VGGKTYN--LAH-------YTKEMYLLGYLARDNKVYL---------A 588
Query: 684 TQDGNHQLGYELDESLIEFGTAVHDSDFGKA-----------------ILYLESLG---- 722
++ + GYE+ ++EF T + +A +LE
Sbjct: 589 DREVHV-YGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEE 647
Query: 723 ---------------------------INKKEAEGMWQNLAEVAIQLHNLHVAEICYAAL 755
+ + AE W+ L + ++Q N +A +
Sbjct: 648 ALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707
Query: 756 GDISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHK 815
D+ + L + + L A+ A +F +A Y +I
Sbjct: 708 HDLESLFLLHSS------------FNNKEGLVTL-AKDAETTGKFNLAFNAYWIAGDIQG 754
Query: 816 AIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKA 860
A D+ +K ++ +A L T NE+ KW + K
Sbjct: 755 AKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKN 799
Score = 35.8 bits (83), Expect = 0.15
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 28 SEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICN 87
+G A +N + + PDS A+ I + + K + +
Sbjct: 375 GDGEYVIYTALAWRNKAFGKC-QDFVWGPDSNSYALIDETGQI------KYYKNFKEVTS 427
Query: 88 KFIQQCPVTTMVWLADGPIIYGQSDGKIK 116
+ L G ++ +SDG +
Sbjct: 428 WSVPMHSAID--RLFSGALLGVKSDGFVY 454
Score = 34.7 bits (80), Expect = 0.35
Identities = 44/260 (16%), Positives = 74/260 (28%), Gaps = 82/260 (31%)
Query: 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC--PVTTMVWLA 102
+S VKG+ F P + + I W + + + IQ PV ++A
Sbjct: 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEI------WNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 103 DGP-IIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161
II G D +I+ ++ N+ + H D +R
Sbjct: 66 RKNWIIVGSDDFRIR-----------VFNYNTGE---KV-----VDFEAHPDY--IRS-- 102
Query: 162 TEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY 221
+ HP PY LS D T+ +++++
Sbjct: 103 -------------IAVHPTKPYVLS--------GSDDL--TV--------KLWNWENNWA 131
Query: 222 KEREFT--------VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTI 272
E+ F VA + G D +K+ WS +S PN T+
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV--WSLGQS----TPNFTLTTGQER 185
Query: 273 S----ALSWKRDGSRIACGG 288
D +
Sbjct: 186 GVNYVDYYPLPDKPYMITAS 205
Score = 33.9 bits (78), Expect = 0.51
Identities = 38/260 (14%), Positives = 67/260 (25%), Gaps = 28/260 (10%)
Query: 9 VSSNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDN 68
N D+F I + + G + LA SP+ + V
Sbjct: 319 GGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGE 378
Query: 69 IIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADG-PIIYGQSDGKIKAAHVKANKTQT 127
+ L W +K VW D G+IK T
Sbjct: 379 YVIYTALA--WRNK--------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSW 428
Query: 128 LYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALS 186
+S + L +L +DG + + D G +V+ V +
Sbjct: 429 SVPMHSAIDRLF----SGALLGVKSDGFVYFF---------DWDNGTLVRRIDVNAKDVI 475
Query: 187 W-PAGYILAAGSDRIVTIYESDGRVHRIF-DYTAPHYKEREFTVACSSPSGQAVVVGSYD 244
W G ++ + E+ G D + V+ +
Sbjct: 476 WSDNGELVMIVNT-NSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSE 534
Query: 245 NIKLFAWSPSKSVWEEQPNK 264
+I W ++ N+
Sbjct: 535 SITSGKWVGDVFIFTTATNR 554
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 47.4 bits (113), Expect = 3e-05
Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 30/255 (11%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGP- 105
+ + + KL A ++ + + T++ W P
Sbjct: 74 CRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPS 133
Query: 106 -IIYGQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVR-GAGVLSGHADGSIVRYY 160
+ G G I + + L N + +G+ R
Sbjct: 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT-RLQ 192
Query: 161 VTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIF 214
+F RV + +L + ++ G V + DG+
Sbjct: 193 ------DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL 246
Query: 215 DYTAPHYKEREFTVACSSPSGQAVVV-GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTI 272
H K++ VA +P + S D +K+ W + + ++P+ + +
Sbjct: 247 R---MH-KKKVTHVAL-NPCCDWFLATASVDQTVKI--WDLRQVRGKASFLYSLPHRHPV 299
Query: 273 SALSWKRDGSRIACG 287
+A + DG+R+
Sbjct: 300 NAACFSPDGARLLTT 314
Score = 45.8 bits (109), Expect = 9e-05
Identities = 48/262 (18%), Positives = 92/262 (35%), Gaps = 38/262 (14%)
Query: 46 SYVVKGLAFSPDSTK-LAVAQSDNIIFIYKLGD-DWGDKKVICNKFIQQCPVTTMVW-LA 102
LA+ P +AV I L + DK +T + +
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDI---MLWNFGIKDKPTFIKGIGAGGSITGLKFNPL 175
Query: 103 DGPIIY-GQSDGKIKAAHVKANKTQTLYASNS---FVVALCLNVRGAGVLSGHADGSI-- 156
+ Y +G + K N + +S++ + +L ++ V++G G++
Sbjct: 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL 235
Query: 157 --VRYYVTEDASNFDQQQGRVVQHPVPPYALSW-PAG-YILAAGS-DRIVTIYE-SDGRV 210
+ ++ N + +V ++ P + LA S D+ V I++ R
Sbjct: 236 LNMD---GKELWNLRMHKKKV-------THVALNPCCDWFLATASVDQTVKIWDLRQVRG 285
Query: 211 HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS----KSVWEEQPNKT 265
F Y+ PH AC SP G ++ + I++ +S S P++
Sbjct: 286 KASFLYSLPH--RHPVNAACFSPDGARLLTTDQKSEIRV--YSASQWDCPLGLIPHPHRH 341
Query: 266 IPNLYTISALSWKRDGSRIACG 287
+L I A +W + I G
Sbjct: 342 FQHLTPIKA-AWHPRYNLIVVG 362
Score = 41.6 bits (98), Expect = 0.002
Identities = 37/271 (13%), Positives = 83/271 (30%), Gaps = 49/271 (18%)
Query: 49 VKGLAFSP-DSTKLAVAQSDNIIFIYKLGDDW----GDKKVICNKFIQQCPVTTMVWLAD 103
+ GL F+P ++ + + + +L +V + ++ A
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTT---RL---QDFKGNILRVFASSDTINIWFCSLDVSAS 220
Query: 104 GPII-YGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVL-SGHADGSI-VRYY 160
++ G + G + ++ + L V + LN L + D ++ +
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI--- 277
Query: 161 VTEDASNFDQQQGRVVQHPVPP-------YALSW-PAGYILAAGS-DRIVTIYE-SDGRV 210
+D +Q R + A + P G L + +Y S
Sbjct: 278 -------WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330
Query: 211 HRIFD-YTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS----VWEEQPNKT 265
+ H++ A P +VVG Y + + +P + V++ K
Sbjct: 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390
Query: 266 IPNL--------YTISALSWKRDGSRIACGG 288
+ L +++ + G +A
Sbjct: 391 MCQLYDPESSGISSLNEFN--PMGDTLASAM 419
Score = 32.4 bits (74), Expect = 1.3
Identities = 41/231 (17%), Positives = 67/231 (29%), Gaps = 38/231 (16%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWG-DKKVICNKFIQQCPVTTMVWLADGP-- 105
L S S + + + L D K + N + + VT +
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNV---IL---LNMDGKELWNLRMHKKKVTHVALNPCCDWF 265
Query: 106 IIYGQSDGKIK---AAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161
+ D +K V+ + V A C + GA +L+ I R Y
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEI-RVY- 323
Query: 162 TEDASNFDQQQG------RVVQHPVPPYALSWPAGYILAAGS---DRIVTIYESDGRVHR 212
AS +D G R QH P A P ++ G + + R
Sbjct: 324 --SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381
Query: 213 IFDY---------TAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPS 254
+FD P ++ +P G + +I + WS
Sbjct: 382 VFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLASAMGYHILI--WSQQ 429
Score = 31.2 bits (71), Expect = 3.2
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKL--GDDWGDKKVICNKFIQQCPVTTMVWLAD 103
+ V FSPD +L + I +Y D ++ Q W
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPR 355
Query: 104 GPIIYGQS--DGKIKAAHVKANKT 125
+I D K+ +T
Sbjct: 356 YNLIVVGRYPDPNFKSCTPYELRT 379
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 47.0 bits (112), Expect = 3e-05
Identities = 35/318 (11%), Positives = 88/318 (27%), Gaps = 88/318 (27%)
Query: 17 DVFNLDIVRLR--SEGNVAGIWAWRGQ------NGRKSYVVKGLAFSPD---STKLAVAQ 65
F+ D++ R E + + + +K S D S +L
Sbjct: 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK-WGASNDRLLSHRLVATD 145
Query: 66 SDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKT 125
+I+K + + + + G +
Sbjct: 146 VKGTTYIWKF------------HPFADESNSLTLNWSP----TLELQGTV---------- 179
Query: 126 QTLYASNSFV--VALCLNVRGAGVL-SGHADGSIVRYYVTEDASNFDQQQGRVVQ-HPVP 181
++ + F V + G++ +G +G++ ++ ++ + + +
Sbjct: 180 ESPMTPSQFATSVDISER----GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235
Query: 182 PYALSW-PAGYILAAGSD----RIVTIYE-SDGRVHRIFDYTAPHYKERE---------F 226
++ + P G +LA D +T+YE G +
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 227 TVACSSPSGQAVVVGSYDN-IKLFAWSP------------SKSVWEEQPNKTIPNLYTIS 273
+++ + SG+ + +D ++ W + E+
Sbjct: 296 SLSFN-DSGETLCSAGWDGKLRF--WDVKTKERITTLNMHCDDIEIEE-----------D 341
Query: 274 ALSWKRDGSRIACGGLCG 291
L+ G +A G+
Sbjct: 342 ILAVDEHGDSLAEPGVFD 359
Score = 31.3 bits (71), Expect = 2.7
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 229 ACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTIS--ALSW-----KRDG 281
S + D K V E+ + ++ S AL W +
Sbjct: 87 TSFSGDLLFYRITREDET--------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138
Query: 282 SRIACGGLCGSVEL 295
R+ + G+ +
Sbjct: 139 HRLVATDVKGTTYI 152
Score = 29.7 bits (67), Expect = 8.1
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 52 LAFSPDSTKLAVAQSDNIIFIYKLGD 77
LA LA ++ F+ K
Sbjct: 343 LAVDEHGDSLAEPGVFDVKFLKKGWR 368
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 46.4 bits (111), Expect = 4e-05
Identities = 59/281 (20%), Positives = 93/281 (33%), Gaps = 57/281 (20%)
Query: 35 IW-AWRGQ-----NGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK 88
IW ++ R S+V A++P +A DNI IY L + V ++
Sbjct: 81 IWDSYTTNKVHAIPLRSSWV-MTCAYAPSGNYVACGGLDNICSIYNLKT--REGNVRVSR 137
Query: 89 FIQ--QCPVTTMVWLADGPIIYGQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGA 145
+ ++ +L D I+ D ++ + T T V++L L
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 146 GVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGSDRI 200
+SG D S + + D ++G Q H A+ + P G A GSD
Sbjct: 198 LFVSGACDASA-KLW--------DVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-- 246
Query: 201 VTIYESDGRVHRIFDYTA--------PHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 251
D R+FD A T S SG+ ++ G D + W
Sbjct: 247 ------DATC-RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV--W 297
Query: 252 SPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIACGG 288
K+ L +S L DG +A G
Sbjct: 298 DALKA----DRAGV---LAGHDNRVSCLGVTDDGMAVATGS 331
Score = 30.6 bits (70), Expect = 4.3
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 30 GNVAGIWAWRGQNGRK----SYVVKGLAFSPDSTKLAVAQSDNII 70
N+ + + + R + + + DS L A D +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKL 79
Score = 30.2 bits (69), Expect = 6.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGL 289
+ ++ S D + + W + IP + ++ G+ +ACGGL
Sbjct: 64 GTDSRLLLSASQDGKLII--WD----SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 46.6 bits (111), Expect = 6e-05
Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 33/265 (12%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
++ + T A +D+ + ++ L D + + W + II
Sbjct: 26 PLLVSGTVSGTVDANFSTDSSLELWSLLA--ADSEKPIASLQVDSKFNDLDWSHNNKIIA 83
Query: 109 GQS-DGKIK-----AAHVKANKTQTLYASNSFVVALCLNVRGAGVL-SGHADGSI----V 157
G +G ++ A+ N +S V + N + VL SG +G I +
Sbjct: 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143
Query: 158 RYYVTEDASNFDQQQGRVVQHPVPPYALSW-P-AGYILAAGS-DRIVTIYE-SDGRVHRI 213
++ G+ + +L+W ++ A+ +I++ +
Sbjct: 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH 203
Query: 214 FDYTAPHYKERE--FTVACSSPSGQAVVVGSYDN-----IKLFAWSPSKSVWEEQPNKTI 266
YT+P+ ++ V P V + + I + W + P +T+
Sbjct: 204 LSYTSPNSGIKQQLSVVEW-HPKNSTRVATATGSDNDPSILI--WDLRNA---NTPLQTL 257
Query: 267 PNLYT--ISALSW-KRDGSRIACGG 288
+ I +L W +D + G
Sbjct: 258 NQGHQKGILSLDWCHQDEHLLLSSG 282
Score = 39.6 bits (93), Expect = 0.009
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 290
+ SG S D+ ++L WS + E+P ++ + L W + IA
Sbjct: 32 TVSGTVDANFSTDSSLEL--WSL-LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN 88
Query: 291 GSVELF 296
GS+EL+
Sbjct: 89 GSLELY 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 46.2 bits (110), Expect = 6e-05
Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 49/316 (15%)
Query: 46 SYVVKGLAFSPDSTKLAV----AQSDNIIFIYKLGDDWGDKKVICNKFIQQC-PVTTMVW 100
+Y V + P S K A+ +I +Y + + + I++ P+ +
Sbjct: 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLY----EIQHGDLKLLREIEKAKPIKCGTF 73
Query: 101 LADGP----IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGA----G--VL 148
A + G G + +++A + ++ + A+ ++
Sbjct: 74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIV 133
Query: 149 SGHADGSI------VRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVT 202
+G DG++ + + + R A + ++ AG D
Sbjct: 134 TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN-QEERVVCAGYD---- 188
Query: 203 IYESDGRVHRIFD------YTAPHYKEREFTVACS--SPSGQAVVVGSYDN-IKLFAWSP 253
+G + ++FD + K ++ S +V S + +F
Sbjct: 189 ----NGDI-KLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243
Query: 254 SKSVWEEQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVEL--FESVLKRTIWKGKFE 310
+ T+ + + G G + L +E ++R+ +
Sbjct: 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303
Query: 311 MIYVSPSQVLVKPLSG 326
+ V+ S L++ ++
Sbjct: 304 EMGVAGSVSLLQNVTL 319
Score = 35.0 bits (81), Expect = 0.18
Identities = 28/248 (11%), Positives = 71/248 (28%), Gaps = 55/248 (22%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW----GDKKVIC-------NKFIQQCPVTT 97
+ GL + ++ D + K+ W D V NK
Sbjct: 120 IGGLGIGEGAPEIVTGSRDGTV---KV---WDPRQKDDPVANMEPVQGENKRDCWTVAFG 173
Query: 98 MVWLADGPII-YGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAG---VLSGHAD 153
+ + ++ G +G IK ++ + + V +L + + +++ +
Sbjct: 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE 233
Query: 154 GSIVRYYVTEDASNFDQQQGRVVQ------HPVPPYALSW-PAG-YILAAGS-DRIVTIY 204
G + D +G V + + P + + ++
Sbjct: 234 GKF-HVF---DMRTQHPTKGFASVSEKAHKSTV--WQVRHLPQNRELFLTAGGAGGLHLW 287
Query: 205 ESDGRVHRIFDYTAPHYKEREFTVACS---------------SPSGQAVVV-GSYDN-IK 247
+ + + R + +V+ SP + + V S+D ++
Sbjct: 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347
Query: 248 LFAWSPSK 255
+ +K
Sbjct: 348 V--LIVTK 353
Score = 32.3 bits (74), Expect = 1.1
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 13/122 (10%)
Query: 178 HPVPPYALSW-PAGYILAAG-----SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACS 231
+ W P ++ +YE ++ + T +
Sbjct: 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGAT 76
Query: 232 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQP----NKTIPNLYTISALSWKRDGSRIAC 286
S + + G + + + W+ + I + I L I
Sbjct: 77 SLQQRYLATGDFGGNLHI--WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 287 GG 288
G
Sbjct: 135 GS 136
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 45.2 bits (108), Expect = 1e-04
Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 58/284 (20%)
Query: 35 IW-AWRGQ-----NGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK 88
+W ++ ++V A++P +A DN +Y L D + K
Sbjct: 90 VWDSFTTNKEHAVTMPCTWV-MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKK 148
Query: 89 FIQ--QCPVTTMVWLADGP-IIYGQSDGKIKAAHVKANK-TQTLYASNSFV--VALCLNV 142
+ ++ + I+ DG V++ + Q+ + + V + L +
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
Query: 143 RGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS 197
G +SG D + D + G+ VQ H ++ + P+G A+GS
Sbjct: 209 TGNTFVSGGCDKKA-MVW--------DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 198 DRIVTIYESDGRVHRIFDYTA--------PHYKEREFTVACSSPSGQAVVVGSYDN-IKL 248
D D R++D A + S SG+ + G D I +
Sbjct: 260 D--------DATC-RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310
Query: 249 FAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIACGG 288
W+ + L+ +S L DG+ G
Sbjct: 311 ---------WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Score = 33.3 bits (77), Expect = 0.58
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 34/122 (27%)
Query: 183 YALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFT--------VACSSP 233
+ W + + S DG+V ++D + KE T A + P
Sbjct: 68 LCMDWCKDKRRIVSSSQ--------DGKV-IVWD-SFTTNKEHAVTMPCTWVMACAYA-P 116
Query: 234 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWKRDGSRIA 285
SG A+ G DN + + + ++ + +SA S+ +I
Sbjct: 117 SGCAIACGGLDNKCSV--Y----PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 286 CG 287
Sbjct: 171 TA 172
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 45.3 bits (108), Expect = 1e-04
Identities = 35/293 (11%), Positives = 87/293 (29%), Gaps = 59/293 (20%)
Query: 38 WRGQNGRK-------SYVVKGLAFSPDSTKLAVAQSDNIIFIYKL-------------GD 77
W NG + + + + + +D I KL
Sbjct: 59 WYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI---KLWDVSNGQCVATWKSP 115
Query: 78 DW---------GDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTL 128
G+ + + + P + ++ + I + ++ +
Sbjct: 116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIY--E--IERDSATHELTKVSEEPIHKIIT 171
Query: 129 YASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW- 187
+ + +G +++GH DG I +Y D SN + + H + +
Sbjct: 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKY----DVSNNYEYVDSIDLHEKSISDMQFS 227
Query: 188 PAGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN 245
P S D + + S +V + ++ + A +P + +++G
Sbjct: 228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYE------TDCPLNTAVITPLKEFIILGGGQE 281
Query: 246 IKLFAWSPSKS------VWEEQPNKTIPNLY----TISALSWKRDGSRIACGG 288
K + + + + + I + ++ ++ G+ A GG
Sbjct: 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334
Score = 30.3 bits (69), Expect = 6.5
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 232 SPSGQAVVVGSYDN------IKLF--AWSPSKSVWEEQPNKTIPNLYT------ISALSW 277
SP G + + I ++ + + + I + T + W
Sbjct: 124 SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183
Query: 278 KRDGSRIACGGLCGSV 293
G I G G +
Sbjct: 184 STKGKYIIAGHKDGKI 199
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 45.4 bits (107), Expect = 1e-04
Identities = 82/475 (17%), Positives = 156/475 (32%), Gaps = 109/475 (22%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
+ ++G + A++ Y+KA+ S +VQ ++VK L +
Sbjct: 61 AKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA----ANTSGNWEELVKYLQMARKKARES 116
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
+ E E K ++ +L IN N +++ GD + K Y+AA
Sbjct: 117 YV-----ETELIF-ALAK---TNRLAELEEFINGPNNAHIQQV-GDRCYDEKMYDAAKLL 166
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQ-HFKTV--KDYKTAE 1037
Y + T + +++ AV + A +T + F V K+++ A+
Sbjct: 167 YNNVSNFGRLASTLVHLGEYQAAVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQ 219
Query: 1038 ----KIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQ------------------------- 1068
I H D E++++ Y G +E+ + E
Sbjct: 220 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 279
Query: 1069 ----HLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAI-------------SM 1111
HL + + + + E+ + + E LY E D AI
Sbjct: 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339
Query: 1112 FK-------NQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKY-------- 1156
FK N Y I+ + P LL+ L+ L+ + ++ K
Sbjct: 340 FKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 399
Query: 1157 YL-----------------------DCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVE 1193
YL D + +I Y + + A R+ + E
Sbjct: 400 YLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE-KHELIEFRR 458
Query: 1194 PVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEE 1248
YL+ + +V L + SL + + A ++ + A EL + ++ + E
Sbjct: 459 IAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRE 513
Score = 33.4 bits (76), Expect = 0.83
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 1231 FDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKP---KEAISMYIHNQ 1287
D A+E A+ + V + A G EA +IKA+ P E + +
Sbjct: 41 LDRAYEFAE---RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSG 97
Query: 1288 DWENAER---IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDL--IIEKYK 1342
+WE + +A + S + L + ++ E + + + + ++
Sbjct: 98 NWEELVKYLQMARKKARESYVETEL--IFALAKTNRLAELEEFINGPNNAHIQQVGDRCY 155
Query: 1343 MNHMWNDA 1350
M++ A
Sbjct: 156 DEKMYDAA 163
Score = 33.0 bits (75), Expect = 0.89
Identities = 63/345 (18%), Positives = 115/345 (33%), Gaps = 54/345 (15%)
Query: 1140 LAQECEESKNYKQAEKYYLDCNEWKLAIKMY-RSLNLWEDAYRIALSNGGQEAVEPVVYL 1198
A+ C E + Q K L K AI Y ++ + + +N E V YL
Sbjct: 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYL 106
Query: 1199 W-----AKSLGGDSAVRL----LNRLSLLESCI--SNACDTYQF-DFAFEL-----AKIG 1241
A+ ++ + NRL+ LE I N Q D ++ AK+
Sbjct: 107 QMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLL 166
Query: 1242 MKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKP---KEAISMYIHNQDWENAERIANE 1298
+ + A L G++ A KAN KE + +++ A+
Sbjct: 167 YNNVSN--FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 224
Query: 1299 --HDPTSIGDILLNQSKCEFENENFSKFETLLL--RAHKVDLIIEKYKMNHMWNDALRVC 1354
+ +++ + E + E L RAH M+ + +
Sbjct: 225 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM-----------GMFTELAILY 273
Query: 1355 GEYVPSKLPLLQQEYEKEINT--NISKDIHSLITQARQWE-------QNGEFYNAVECYL 1405
++ P K+ +E+ + + NI K + + QA W + E+ NA+ +
Sbjct: 274 SKFKPQKM----REHLELFWSRVNIPKVLRAA-EQAHLWAELVFLYDKYEEYDNAIITMM 328
Query: 1406 KIKNV--DVNLMVKILNEVTQLTLKYLNHDQSYKILPSLVPKLME 1448
I+ +V + L Y + P L+ L+
Sbjct: 329 NHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM 373
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic
reticulum, TPR repeat, UNF protein response; 2.51A {Mus
musculus}
Length = 359
Score = 45.0 bits (107), Expect = 1e-04
Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 50/232 (21%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
+ L+ ++ +A D + K L + E + + + ++
Sbjct: 80 LLLKQGKLDEAEDDFKK------VLKSNPSEQEEKEAESQ--LVKADEMQRLRSQALDAF 131
Query: 866 KEGDHQTALNYYLKA-----NFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKA- 919
D+ A+ + K + E +S + +A
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191
Query: 920 ---GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTAL-----------EEEWG 965
+Y ++E +L R +C+ K++ + E
Sbjct: 192 YKISTLYYQLGDHELSLSEVR------ECL----KLDQDHKRCFAHYKQVKKLNKLIESA 241
Query: 966 DHLIENKQYNAAINHYIEAGK---NNKALDTSI---------KAKQWKKAVQ 1005
+ LI + +Y A + Y K + K ++ +A++
Sbjct: 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293
Score = 37.6 bits (88), Expect = 0.031
Identities = 36/276 (13%), Positives = 85/276 (30%), Gaps = 79/276 (28%)
Query: 710 DFGKAILYLE-SLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETI 768
D+ AI +L+ L + +AE + + AE I+ A +
Sbjct: 135 DYTAAITFLDKILEVCVWDAE-LRELRAECFIKEGEPRKAISDL------------KAAS 181
Query: 769 KIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMYLKLYKWED 828
K+ E + +++ +Y + + ++ +
Sbjct: 182 KL-----------KS-DNTEAFYKIST----------LYYQLGDHELSLSEVRE------ 213
Query: 829 ALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACN 888
L L + + + K+ +K L + E ++G + A + Y
Sbjct: 214 CLKLDQDHKRCFAHYKQ--VKKLNKLIES---AEELIRDGRYTDATSKYESV-------- 260
Query: 889 LVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDL 948
++ EP + + + + + +A+ + +
Sbjct: 261 -MKTEP---SVAEYTVRS---------KERICHCFSKDEKPVEAIRI------CSEVL-- 299
Query: 949 TRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEA 984
++ P NV AL++ + + + Y+ AI Y A
Sbjct: 300 --QMEPDNVNALKDR-AEAYLIEEMYDEAIQDYEAA 332
Score = 37.6 bits (88), Expect = 0.031
Identities = 39/343 (11%), Positives = 114/343 (33%), Gaps = 83/343 (24%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRK----------------------GKVYDKCI-DLTR 950
E +++ G+ + AL + GK + DLT+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTK 62
Query: 951 --KINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQ 1008
+ A + G L++ + + A + + + K+N + + K+ + +
Sbjct: 63 VIALKMDFTAARLQR-GHLLLKQGKLDEAEDDFKKVLKSNP---SEQEEKEAESQLVKAD 118
Query: 1009 VITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVDMYHQTGQWEKAYAIAE 1067
+ + A A + + ++ ++ E + + + G+ KA + +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 1068 Q-----------HLNVGEIKA---------TFIQKCKQLEEENK--FKEAERLYLIIGEP 1105
+ + + +++C +L++++K F +++ +
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238
Query: 1106 DLAISMFKNQR------QYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLD 1159
+ A + ++ R +YE+++K + + + + + + +A +
Sbjct: 239 ESAEELIRDGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKDEKPVEAIR---I 294
Query: 1160 CNEWKLAIKM--------------YRSLNLWEDA---YRIALS 1185
C+E ++M Y ++++A Y A
Sbjct: 295 CSE---VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334
Score = 34.6 bits (80), Expect = 0.23
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 21/124 (16%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
G L K+G A + + K +++ P E + SQ+VK + +
Sbjct: 78 GHLLLKQGKLDEAEDDFKKV---------LKSNPSEQEEKEAESQLVK-ADEMQRLRSQA 127
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
+ A+ DK + ++ + E + I+ + AI+
Sbjct: 128 LDAFDGADYTAAITF------LDKIL----EVCVWDAELRELR-AECFIKEGEPRKAISD 176
Query: 981 YIEA 984
A
Sbjct: 177 LKAA 180
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 44.7 bits (105), Expect = 2e-04
Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 33/211 (15%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP--- 105
++ + D T + +A ++ + +K +T + + D
Sbjct: 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ 211
Query: 106 -IIYGQSDGKIKAAHVKANKT--QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVT 162
II D IK +H + L+ FV ++C + +LS D I +
Sbjct: 212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC-GKDYLLLSAGGDDKI-FAW-- 267
Query: 163 EDASNFDQQQGRVVQ-HPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY 221
D + G+ + + LA + + V +I
Sbjct: 268 ------DWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI-------- 313
Query: 222 KEREFTVACSSPSGQAVVVGSYDNIKLFAWS 252
S + V +
Sbjct: 314 --------IKSKNLPFVAFFVEATKCIIILE 336
Score = 42.0 bits (98), Expect = 0.002
Identities = 27/297 (9%), Positives = 77/297 (25%), Gaps = 55/297 (18%)
Query: 94 PVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHAD 153
P+ ++ DG +++ I + ++ +D
Sbjct: 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWE-------------------FAGKWSD 46
Query: 154 GSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRI 213
D + + + + + L + +I + +V
Sbjct: 47 ----------DFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD--SIKRTAAKVPSP 94
Query: 214 FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTI 272
P Y + +S + + D + +F + + K
Sbjct: 95 GLGAPPIY-SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRP 152
Query: 273 SALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG 332
+A+S D + + G ++ ++ + + +P+ G
Sbjct: 153 NAISIAEDDTTVIIADKFG-----------DVY--SIDINSIPEEKFTQEPILGHVSMLT 199
Query: 333 VILKSQYGYEITDVAIMGNDRYL-VARTPD-----TLLLGDLHRNLLSEVLWPDSGR 383
+ + + D ++ ++ P L G H++ +S +
Sbjct: 200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG--HKHFVSSICCGKDYL 254
Score = 38.5 bits (89), Expect = 0.019
Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 39/187 (20%)
Query: 49 VKGLAFSPDSTKL-AVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGP-I 106
++ L + D ++L A A SD + ++ + + + +F + D +
Sbjct: 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTV 164
Query: 107 IYGQSDGKIKAAHVKANKT-----QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161
I G + + + + + + S + + L D ++ +
Sbjct: 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL----------IKDSDGHQFII 214
Query: 162 TEDASN----FDQQQGRVVQHP-------VPPYALSWPAGYILAAGSDRIVTIYESDGRV 210
T D Q +V V ++ Y+L + D ++
Sbjct: 215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFV--SSICCGKDYLLLSAGG--------DDKI 264
Query: 211 HRIFDYT 217
+D+
Sbjct: 265 -FAWDWK 270
Score = 33.5 bits (76), Expect = 0.69
Identities = 34/273 (12%), Positives = 66/273 (24%), Gaps = 53/273 (19%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDD--------WGDKKVICNKFIQQCPVTTMVW 100
++ L S D L A N I +K W D +
Sbjct: 7 LQNLLTSRDG-SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQ 65
Query: 101 LA----DGPIIYGQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVL-SGHADG 154
+ + + IK K S++ L L + ++ +D
Sbjct: 66 SSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDK 125
Query: 155 SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVH-- 211
S+ + + S + + P A+S + G V+
Sbjct: 126 SL-LVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD--------KFGDVYSI 176
Query: 212 RIFDYTAPHYKEREFT--------VACS--SPSGQAVVVGSYDN-IKLFAWSPSKSVWEE 260
I + + V S Q ++ D IK +
Sbjct: 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIK---------ISHY 227
Query: 261 QPNKTIPNLYT-----ISALSWKRDGSRIACGG 288
+ +S++ +D + G
Sbjct: 228 PQCFIVDKWLFGHKHFVSSICCGKDY-LLLSAG 259
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 44.7 bits (106), Expect = 2e-04
Identities = 52/452 (11%), Positives = 114/452 (25%), Gaps = 105/452 (23%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
G + + + A+ YY A ++ + Y
Sbjct: 13 GNQFFRNKKYDDAIKYYNWA---------LELKE-----------------DPVFYSNLS 46
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
Y + +K +E K + ++ P L ++ A+
Sbjct: 47 ACYVSVGDLKKVVEMS------TKAL----ELKPDYSKVLLRR-ASANEGLGKFADAMFD 95
Query: 981 Y----IEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTA 1036
+ N+ +++ ++ K+A+ L+ + A +
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLK-----EKFGDIDTATATPTELSTQPAKE 150
Query: 1037 EKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAE 1096
K + + + E +A ++ + + + E+ K E
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210
Query: 1097 RLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKY 1156
+ + + KL +L H + A +
Sbjct: 211 SFTKAARLFEEQLD------KNNEDEKLKEKLA-----ISLEHTGIFKFLKNDPLGAHED 259
Query: 1157 Y--------------------LDCNEWKLAIKMY-RSLNL---WEDAYR---IALSNGGQ 1189
D N+ + ++L L Y
Sbjct: 260 IKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319
Query: 1190 --EAVEPVVYLWAKSLGGDSAV------RLLNRLSLLESCISNACDTYQFDFAFELAKIG 1241
+A + + AK L ++ L R + + C + F A
Sbjct: 320 YDQAGK--DFDKAKELDPENIFPYIQLACLAYRENKFDDCET----------LFSEA-KR 366
Query: 1242 MKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
+ EV +A +L D F++A Q+ A
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398
Score = 37.0 bits (86), Expect = 0.048
Identities = 23/213 (10%), Positives = 61/213 (28%), Gaps = 50/213 (23%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
+ N+ ++ + A N E+
Sbjct: 347 LAYRENKFDDCETLFSE------AKRKFPEAPEVPNFF-----------------AEILT 383
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEF 925
+ D AL Y A ++ E + + + ++
Sbjct: 384 DKNDFDKALKQYDLA---------IELEN---KLDGIYVG--IAPLVGKA--TLLTRNPT 427
Query: 926 TNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAG 985
+A +K K++P++ A ++ + + AI + E+
Sbjct: 428 VENFIEATNLL------EKAS----KLDPRSEQAKIGL-AQMKLQQEDIDEAITLFEESA 476
Query: 986 KNNKALDTSIKAKQWKKAVQILQVITNKQDIAQ 1018
+ ++ ++A + +A ++ Q I + +A+
Sbjct: 477 DLARTMEEKLQAITFAEAAKVQQRIRSDPVLAK 509
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 44.4 bits (106), Expect = 2e-04
Identities = 36/273 (13%), Positives = 81/273 (29%), Gaps = 42/273 (15%)
Query: 39 RGQNGRKSYVVKGLAFSPDSTKLAVAQS-DNIIFIYKLGDDWGDKKVICNKFIQ-QCPVT 96
+G G K + D V D +I + + V
Sbjct: 4 QGAMGSKP--AYSFHVTADGQMQPVPFPPDALIGP------GIPRHARQINTLNHGEVVC 55
Query: 97 TMVWLADGPIIYGQSDGKIK------AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSG 150
+ +Y G +K + ++++ + L G ++ G
Sbjct: 56 AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 151 HADGSIVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSW-PAGYILAAGS-DRIVTIYE-S 206
++ + D + + + YAL+ P + + D + +++
Sbjct: 116 GEASTLSIW----DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT 265
+ + R F H + + S G + G DN ++ W+ + +
Sbjct: 172 NQTLVRQFQG---H-TDGASCIDI-SNDGTKLWTGGLDNTVRS---------WDLREGRQ 217
Query: 266 IPNL---YTISALSWKRDGSRIACGGLCGSVEL 295
+ I +L + G +A G +VE+
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Score = 33.6 bits (78), Expect = 0.47
Identities = 41/260 (15%), Positives = 74/260 (28%), Gaps = 84/260 (32%)
Query: 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI-QQCPVTTMVWL 101
R +Y+ + PD L V + + + D I + +
Sbjct: 95 NRDNYI-RSCKLLPDGCTLIVGGEASTL---SIWDLAAPTPRIKAELTSSAPACYALAIS 150
Query: 102 ADGPIIY-GQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADG--SIVR 158
D + + SDG I + QTL GH DG I
Sbjct: 151 PDSKVCFSCCSDGNIAVWDL---HNQTL----------------VRQFQGHTDGASCI-- 189
Query: 159 YYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGS-DRIVTIYE-SDGRVHRIFDY 216
+S G L G D V ++ +GR + D+
Sbjct: 190 -------------------------DIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 217 TAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT---- 271
T+ + ++ P+G+ + VG + +++ +K P+ Y
Sbjct: 224 TSQIF-----SLGY-CPTGEWLAVGMESSNVEV--LHVNK-----------PDKYQLHLH 264
Query: 272 ---ISALSWKRDGSRIACGG 288
+ +L + G G
Sbjct: 265 ESCVLSLKFAYCGKWFVSTG 284
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 42.5 bits (101), Expect = 2e-04
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 42/167 (25%)
Query: 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALE--EEWGDHLIENKQYNAA 977
G + A+ + + L +E+GD E Y+
Sbjct: 16 GNTHYLLGNFRDAVIAHEQ--------------------RLLIAKEFGDKAAERIAYSNL 55
Query: 978 INHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037
N YI G+ A + +KK + + + + ++ AQ +L + ++DY+ A
Sbjct: 56 GNAYIFLGEFETASE------YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 109
Query: 1038 KIYSHC-DMHEQIVD-------------MYHQTGQWEKAYAIAEQHL 1070
+ + +++ D Y G ++A AE+HL
Sbjct: 110 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156
Score = 39.4 bits (93), Expect = 0.003
Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 49/197 (24%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
G + G+ + A+ + + L+ + E D ++ + +Y G
Sbjct: 16 GNTHYLLGNFRDAVIAHEQR--------LLIAK----EFGDKAAERI-------AYSNLG 56
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
Y F E E A E Y+ K + L R++ D +E + + N
Sbjct: 57 NAYIFLGEFETASEYYK------KTLLLARQL------------KDRAVEAQSCYSLGNT 98
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY 1040
Y KA+D K + I Q + ++ + +L + + ++ A
Sbjct: 99 YTLLQDYEKAID------YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM--- 149
Query: 1041 SHCDMHEQIVDMYHQTG 1057
E+ +++ + G
Sbjct: 150 ---HFAEKHLEISREVG 163
Score = 34.8 bits (81), Expect = 0.099
Identities = 21/210 (10%), Positives = 56/210 (26%), Gaps = 49/210 (23%)
Query: 965 GDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLA 1024
G + + + N + G A+ ++ + I + +K L
Sbjct: 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIA------HEQRLLIAKEFGDKAAERIAYSNLG 56
Query: 1025 QHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCK 1084
+ + +++TA + +++ + + Q A+ ++G
Sbjct: 57 NAYIFLGEFETAS------EYYKKTLLLARQLKDR---AVEAQSCYSLGNT--------- 98
Query: 1085 QLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQEC 1144
Y ++ + + AI I L
Sbjct: 99 --------------YTLLQDYEKAIDYHLKHLA----IAQELKDRIGEG-RACWSLGNAY 139
Query: 1145 EESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
N+ QA + + +++ R +
Sbjct: 140 TALGNHDQAMHFA------EKHLEISREVG 163
Score = 31.0 bits (71), Expect = 1.6
Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 75/189 (39%)
Query: 710 DFGKAILYLE-SLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDIST--THF--- 763
+F A++ E L I K+ + + A I NL A Y LG+ T ++
Sbjct: 24 NFRDAVIAHEQRLLIAKE-----FGDKAAERIAYSNLGNA---YIFLGEFETASEYYKKT 75
Query: 764 --LRETIK----IGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAI 817
L +K + ++G+ Y + KAI
Sbjct: 76 LLLARQLKDRAVEAQSC---YSLGN-----------------------TYTLLQDYEKAI 109
Query: 818 DMYLKLYKWEDALSLAETNNYE------YNELKKKYIKWLTDTRQEDKAGELYEKEGDHQ 871
D +LK L++A+ L G Y G+H
Sbjct: 110 DYHLK------HLAIAQELKDRIGEGRACWSL-----------------GNAYTALGNHD 146
Query: 872 TALNYYLKA 880
A+++ K
Sbjct: 147 QAMHFAEKH 155
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Length = 472
Score = 44.5 bits (105), Expect = 3e-04
Identities = 47/408 (11%), Positives = 106/408 (25%), Gaps = 74/408 (18%)
Query: 798 KQFKVAEGIYLENNEIHKAID----------MYLKLYKWEDALSLAETNNYEYNELKKKY 847
+ + AE + + + I +Y + + D + + + Y
Sbjct: 72 ECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131
Query: 848 IKWLTDTRQEDKAGELYEKEGDHQTALNYYLKA-----NFTSKACNLVQNEPYLLENHDV 902
+ E+ L ++ A + KA L Y L+N
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA-IASYRLDNWPP 190
Query: 903 VSQIVKGLIK----NESYIKA--------GQIYEFTNENEKALECYRKGKVYDKCIDLTR 950
+ L + N ++ E E + + +
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE----------AL 240
Query: 951 KINPKNVTALEEEWGDHLIENKQYNAAINHYIEA---------GKNNKALDTSIKAKQWK 1001
+ P L + + AI +A K Q
Sbjct: 241 EKAPGVTDVL-RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 1002 KAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY-SHCDMHEQIVDMYHQTGQWE 1060
+ + K L V K A++ + + + ++ Q+E
Sbjct: 300 NL--------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351
Query: 1061 KAYAIAEQ----HLNVGEIKATFIQKCKQLEEENK-FKEAERLYLIIGEPDLAISMFKNQ 1115
+A ++ L + ++ + K +A ++ + + +
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE------GVKINQKS 405
Query: 1116 RQYENMIKLVRNYHPDLLD------TTLLHLAQECEESKNYKQAEKYY 1157
R+ E M ++ L L LA E ++ +QA++
Sbjct: 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453
Score = 39.5 bits (92), Expect = 0.008
Identities = 13/137 (9%), Positives = 40/137 (29%), Gaps = 28/137 (20%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
++ ++ +A + K + E + + Y
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF-------------------QLY 383
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKA----GQ 921
+ A++++++ ++ + L+ L KN + +A
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK-----IAKMRLSKNGADSEALHVLAF 438
Query: 922 IYEFTNENEKALECYRK 938
+ E + ++A E +
Sbjct: 439 LQELNEKMQQADEDSER 455
Score = 35.7 bits (82), Expect = 0.15
Identities = 80/543 (14%), Positives = 143/543 (26%), Gaps = 117/543 (21%)
Query: 878 LKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKN---ESYIKAGQIYEFTNENEKALE 934
LK +FT NL++ E L + D V + + + +NE ALE
Sbjct: 16 LKCHFTW---NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALE 72
Query: 935 CYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTS 994
C RK +L ++ + + N A +Y G+ +
Sbjct: 73 CLRK------AEELIQQEHADQA--------EIRSLVTWGNYAWVYY-HMGRLSDVQIYV 117
Query: 995 IKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYH 1054
K K + I + + + T + + A+ + E+ ++
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG--NQNERAKVCF------EKALEKKP 169
Query: 1055 QTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEEN-KFKEA--------ERLYLIIGEP 1105
+ ++ AIA L+ I +Q N + ++ E
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229
Query: 1106 DLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKL 1165
+ E ++ P + D L A+ +A + K
Sbjct: 230 GEGEKL------VEEALEK----APGVTDV-LRSAAKFYRRKDEPDKAIELL------KK 272
Query: 1166 AIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNA 1225
A++ + G Y + + L I +A
Sbjct: 273 ALEYIPN-------NAYLHCQIG------CCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Query: 1226 CDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA--NKPKEAISMY 1283
+ L V A + Q+ EAE F K +
Sbjct: 320 VAHLKKA-------DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Query: 1284 IHNQDWENAERIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIEKYKM 1343
+H G+ L Q KCE D I +
Sbjct: 373 LHL----------------RYGNFQLYQMKCE-------------------DKAIHHFIE 397
Query: 1344 NHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNISKDIHSLITQARQWEQNGEFYNAVEC 1403
N R + LQ+ + ++ N D +L A E N + A E
Sbjct: 398 GVKINQKSREKEKM----KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADED 452
Query: 1404 YLK 1406
+
Sbjct: 453 SER 455
Score = 31.8 bits (72), Expect = 1.9
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 24/137 (17%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNE-----S 915
L+ ++ A Y+ K + H +K E
Sbjct: 341 ASLHALADQYEEAEYYF------QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394
Query: 916 YIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYN 975
+I+ +I + + E EK + + K+ + N + AL N++
Sbjct: 395 FIEGVKINQKSREKEKMKDKLQ--KIAKMRL----SKNGADSEAL-HVLAFLQELNEKMQ 447
Query: 976 AAINHYIEAGKNNKALD 992
A + L+
Sbjct: 448 QADEDS------ERGLE 458
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 42.7 bits (100), Expect = 7e-04
Identities = 29/265 (10%), Positives = 73/265 (27%), Gaps = 34/265 (12%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIY 108
V F+ D + L ++ + IY + I ++ ++ M+ +
Sbjct: 22 VTDYEFNQDQSCLILS-TLKSFEIY----NVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV 76
Query: 109 GQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNF 168
+ + + ++ V L L+ + I + F
Sbjct: 77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLS---REFIVVSYGDVISVF-------KF 126
Query: 169 DQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDG------RVHRIFDYTAPHYK 222
R+ + G ++ + + I+ +
Sbjct: 127 GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG 186
Query: 223 EREFTVACS--------SPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKTIPNLYTI 272
+ A + + V S D I++ + V + + + +
Sbjct: 187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV--FKTEDGVLVREFRRGLDR-ADV 243
Query: 273 SALSWKRDGSRIACGGLCGSVELFE 297
+ W DGS++A ++ +FE
Sbjct: 244 VDMKWSTDGSKLAVVSDKWTLHVFE 268
Score = 34.2 bits (78), Expect = 0.30
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDD 78
G V + +S D +KLAV + ++++ +D
Sbjct: 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 31/230 (13%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
VK +A++P LA D + + + + + C + V +VW +
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSV---WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164
Query: 107 IY-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI------ 156
+ D +K TL S V +L + G + S D ++
Sbjct: 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224
Query: 157 VRYYVTEDASNFDQQQGRVVQ-----HPVPPYALSW-PAGYILAAGS-DRIVTIY-ESDG 208
+ A + + + H Y ++W LA D + ++ E
Sbjct: 225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284
Query: 209 RVHRIFDYTAPHYKEREFT-----VACSSPSGQAVVVGSYDN-IKLFAWS 252
+ ++ + + + VA + + S D + W
Sbjct: 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF--WK 332
Score = 37.2 bits (87), Expect = 0.042
Identities = 49/282 (17%), Positives = 89/282 (31%), Gaps = 53/282 (18%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC---PVTTMVWLADGP 105
LA++P T LA D I I+ IC + + V + W G
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIW----GTEGDSWICKSVLSEGHQRTVRKVAWSPCGN 74
Query: 106 IIY-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV 161
+ D TL + V ++ G + + D S V V
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS-VW--V 131
Query: 162 TEDASNFDQQQGRVVQ-HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTA 218
E + + V+ H + W P+ +LA+ S D T+ +++
Sbjct: 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD--TV--------KLYREEE 181
Query: 219 PHYKERE---------FTVACSSPSGQAVVVGSYDN-IKLFAW--------SPSKSVWEE 260
+ +++A PSGQ + S D +++ W +
Sbjct: 182 DDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRI--WRQYLPGNEQGVACSGSD 238
Query: 261 QPNKTIPNL-----YTISALSWKRDGSRIACGGLCGSVELFE 297
K I L TI ++W + +A ++ +F+
Sbjct: 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Score = 29.8 bits (68), Expect = 8.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 43 GRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKL 75
G S + +A+ + LA A D+ I +++
Sbjct: 249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 41.8 bits (99), Expect = 0.001
Identities = 51/301 (16%), Positives = 93/301 (30%), Gaps = 67/301 (22%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ-----QCPVTTMVW 100
+ ++ ++A SD I K+ + + + +K I + PV + W
Sbjct: 9 NEMIHDAVMDYYGKRMATCSSDKTI---KI---F-EVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 101 --LADGPIIY-GQSDGKIK---AAHVKANKTQTLYASNSFV--VALCLNVRGAGVLSGHA 152
G I+ DGK+ + + ++ ++ V V + G +L +
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 153 DGSIVRYYVTEDASNFDQQQGRVVQHPVPPYALSW-PA-------------GYILAAGS- 197
DG + V E N + H + + SW PA G
Sbjct: 122 DGKV---SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 198 DRIVTIYESDGRVHRIFDYTAPHYKERE---------FTVACS--SPSGQAVVVGSYDN- 245
D +V I++ ++ A Y VA S + S D
Sbjct: 179 DNLVKIWK--------YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230
Query: 246 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW 305
++ + W++ K + SW G+ +A G V T+W
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV---------TLW 281
Query: 306 K 306
K
Sbjct: 282 K 282
Score = 31.4 bits (72), Expect = 2.3
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 24 VRLRSEGNVAGIWAWRGQNGRK-SYVVKGLAFSPDSTKLAVAQSDNIIFIYK 74
+ ++ N G W K V+ ++S LA++ DN + ++K
Sbjct: 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 41.9 bits (99), Expect = 0.001
Identities = 48/298 (16%), Positives = 91/298 (30%), Gaps = 63/298 (21%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
+ T+LA SD + I+ D + I ++ + PV + W
Sbjct: 16 IHDAQMDYYGTRLATCSSDRSVKIF----DVRNGGQILIADLRGHEGPVWQVAWAHPM-- 69
Query: 107 IYGQ------SDGKIK---AAHVKANKTQTLYASNSFV--VALCLNVRGAGVLSGHADGS 155
YG D K+ + K+ +S V V + G + G +DG+
Sbjct: 70 -YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 156 IVRYYVTEDASNFDQQQGRVVQ-HPVPPYALSW-PAGY----------ILAAGSDRIVTI 203
I T + + ++ H + A+SW PA R +
Sbjct: 129 ISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS- 184
Query: 204 YESDGRVHRIFDY-TAPHYKERE---------FTVACS---SPSGQAVVVGSYDN-IKLF 249
+ +++ +KE + VA + + S D + ++
Sbjct: 185 -GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Query: 250 -AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 306
S + W + + + +SW + +A G V T+WK
Sbjct: 244 TCDDASSNTWSPKLLHKFND--VVWHVSWSITANILAVSGGDNKV---------TLWK 290
Score = 31.1 bits (71), Expect = 3.2
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 48 VVKGLAFSPDSTKLAVAQSDNIIFIYK--LGDDW 79
VV +++S + LAV+ DN + ++K + W
Sbjct: 264 VVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 40.5 bits (95), Expect = 0.002
Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 56/240 (23%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
+E + +A+ + + ++L + E ++ + Y+
Sbjct: 13 AAIEAGQNGQAVSYFRQ------TIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEF 925
K ++ A +Y + +Q P + + ++
Sbjct: 66 KNRNYDKAYLFYKEL---------LQKAPNNV----------------DCLEACAEMQVC 100
Query: 926 TNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIEN-KQYNAAINHYIEA 984
+ + AL Y K ++ N+ A G++ +Q + +
Sbjct: 101 RGQEKDALRMYEK----------ILQLEADNLAAN-IFLGNYYYLTAEQEKKKLETDYKK 149
Query: 985 GK---------NNKALDTSIKAKQWKKAVQILQ-VITNKQDIAQHVKTLAQHFKTVKDYK 1034
L + + +++KA LQ VI KTL + + K+
Sbjct: 150 LSSPTKMQYARYRDGL-SKLFTTRYEKARNSLQKVILRFPSTEAQ-KTLDKILRIEKEVN 207
Score = 29.3 bits (66), Expect = 9.1
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 24/129 (18%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIEN-- 971
+ ++ +N +A+ +R + I +N D E
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFR------QTI----ALNIDRTEMYYWTNVDKNSEISS 54
Query: 972 KQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVK 1031
K Y + +KA +K+ +Q ++ A+
Sbjct: 55 KLATELALAYKKNRNYDKAY------LFYKELLQK-----APNNVDCLEA-CAEMQVCRG 102
Query: 1032 DYKTAEKIY 1040
K A ++Y
Sbjct: 103 QEKDALRMY 111
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 41.1 bits (97), Expect = 0.002
Identities = 48/304 (15%), Positives = 86/304 (28%), Gaps = 79/304 (25%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ-----QCPVTTMVWLAD 103
+ +LA SD I K+ + + + +K I + PV + W
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTI---KI---F-EVEGETHKLIDTLTGHEGPVWRVDWAHP 66
Query: 104 GPIIYGQ------SDGKIK---AAHVKANKTQTLYASNSFV--VALCLNVRGAGVLSGHA 152
+G DGK+ + + ++ ++ V V + G +L +
Sbjct: 67 K---FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 153 DGSIVRYYVTEDASNFDQQ--QGRVVQHPVPPYALSW-PA-------------GYILAAG 196
DG + ++ H + + SW PA G
Sbjct: 124 DGKV-SVVEFKENGTTSPIIIDA----HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178
Query: 197 SDRIVTIYESDGRVHRIFDY---TAPHYKEREFT--------VACS--SPSGQAVVVGSY 243
D V +I+ Y + E VA S + S
Sbjct: 179 GA--------DNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229
Query: 244 DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 302
D ++ + W++ K + SW G+ +A G V
Sbjct: 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV--------- 280
Query: 303 TIWK 306
T+WK
Sbjct: 281 TLWK 284
Score = 31.5 bits (72), Expect = 2.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYK 74
V+ ++S LA++ DN + ++K
Sbjct: 256 PDVLWRASWSLSGNVLALSGGDNKVTLWK 284
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 40.5 bits (94), Expect = 0.003
Identities = 36/287 (12%), Positives = 79/287 (27%), Gaps = 32/287 (11%)
Query: 11 SNVLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNII 70
N D++ +D+ G + A SPD ++ +
Sbjct: 60 LNNHYGDIYGIDL----DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR 115
Query: 71 FIYKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYA 130
+V +T L P+ ++ ++A +LY
Sbjct: 116 LNDHYVVKPPRLEVF----------STADGLEAKPVRTFPMPRQV--YLMRAADDGSLYV 163
Query: 131 SNSFVVALCLNVRGAGVLSGHADGSIVR-YYVTEDASNFDQQQGRVVQHPVPPYALSWPA 189
+ + ++V+ + R Y D F Q + + +
Sbjct: 164 AGPDIYK--MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221
Query: 190 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLF 249
A +D + D + + E FT SP + G + +
Sbjct: 222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL-RSPKDPNQIYGVLNRL--- 277
Query: 250 AWSPSKSVWEEQPNKTIPNLY---TISALSWKRDGSRIACGGLCGSV 293
+ ++ + K I T +++ + G ++ GG +
Sbjct: 278 ------AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 318
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 40.4 bits (95), Expect = 0.004
Identities = 45/324 (13%), Positives = 90/324 (27%), Gaps = 86/324 (26%)
Query: 1002 KAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYS--------HCDMHEQIVDMY 1053
I + + Q+ V +LA+ D+K K+ S H +
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 1054 HQTGQWEKAYAIAEQ-----------HLNVGEIKATFIQKCKQLEE-ENKFKEAERL--- 1098
+ + + + ++ + VG ++ + E +A L
Sbjct: 67 VELNKANELFYLSHKLVDLYPSNPVSWFAVG---CYYLMVGHKNEHARRYLSKATTLEKT 123
Query: 1099 -----------YLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEES 1147
+ + E D A++ Y +L++ H +L++ E +
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAMAA------YFTAAQLMKGCH-----LPMLYIGLEYGLT 172
Query: 1148 KNYKQAEKYYLDCNEWKLAIK------------MYRSLNLWEDA---YRIALSNGGQEAV 1192
N K AE+++ L+I + W+ A + AL
Sbjct: 173 NNSKLAERFFSQA----LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228
Query: 1193 EPVVYLWAKS---LGGDSAVRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEV 1249
E V W LG + +L + A + + +
Sbjct: 229 EVTVDKWEPLLNNLG-----HVCRKLKKYAEALD----------YHRQA-LVLIPQNAST 272
Query: 1250 HYKYALVLEDNGQFNEAETQFIKA 1273
+ + G F A F A
Sbjct: 273 YSAIGYIHSLMGNFENAVDYFHTA 296
Score = 35.3 bits (82), Expect = 0.15
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 25/114 (21%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRK---------------GKVYDK---------CIDLT 949
++I G + +E+++A+ Y G Y
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185
Query: 950 RKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKA 1003
I P++ + E G +N ++ A +++A + KA+ + +W+
Sbjct: 186 LSIAPEDPFVMHEV-GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238
Score = 30.3 bits (69), Expect = 4.6
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKPKEAISMYIHNQDWENA 1292
F A + + + V ++ +V NG++ AE F+ A + +AI + WE
Sbjct: 181 FFSQA-LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 39.5 bits (93), Expect = 0.007
Identities = 48/299 (16%), Positives = 94/299 (31%), Gaps = 65/299 (21%)
Query: 47 YVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW----GDKKVICNKFIQQCPVTTMVWLA 102
Y+ + + + +++ W G + + + V ++ W
Sbjct: 95 YLN---LLDWSNLNVVAVALERNVYV------WNADSGSVSALA-ETDESTYVASVKWSH 144
Query: 103 DGPII-YGQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYY 160
DG + G +G + V++ +T+ + V L N + SG G+I +
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHH- 201
Query: 161 VTEDASNFDQQQGRVVQH--PVPPYALSW-PAGYILAAGS-DRIVTIYESD-GR-VHRIF 214
D + Q G + H V L+W G LA+G D +V I+++
Sbjct: 202 ---DVRIANHQIGTLQGHSSEV--CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT 256
Query: 215 DYTAPHYKEREFTVACSSPSGQAVVV---GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY 270
++ A VA P ++ G+ D I W + +
Sbjct: 257 NHNAAVK-----AVAW-CPWQSNLLATGGGTMDKQIHF---------WNAATGARVNTVD 301
Query: 271 T---ISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG 326
+++L W I G + ++ +IW Y S +
Sbjct: 302 AGSQVTSLIWSPHSKEIMSTH--GFPD--NNL---SIWS------YSSSGLTKQVDIPA 347
Score = 37.6 bits (88), Expect = 0.035
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 164 DASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYES-DGRV-----HRIFDYT 217
+A FD + P A L +R + R R+ D
Sbjct: 32 EACGFDLNTRVLAFKLDAPEA---KKPVDLRTQHNRPQRPVVTPAKRRFNTTPERVLD-- 86
Query: 218 AP-HYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT--IS 273
AP ++ + S VV + + + + W+ + + ++
Sbjct: 87 APGI--IDDYYLNLLDWSNLNVVAVALERNVYV--WNADSG----SVSALAETDESTYVA 138
Query: 274 ALSWKRDGSRIACGGLCGSVEL 295
++ W DGS ++ G G V++
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDI 160
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 38.8 bits (91), Expect = 0.013
Identities = 32/265 (12%), Positives = 70/265 (26%), Gaps = 48/265 (18%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKL-------------GDDWGDKKVICNKFI-QQCP 94
+ + ++ D T + +N+ L + G +
Sbjct: 152 IVSVKWNKDGTHIISMDVENVT---ILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 95 VTTMVWLADGPIIYGQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHAD 153
+ W+ D + G I + T L + + L N +LS D
Sbjct: 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD 268
Query: 154 GSI-VRYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGSDRIVTIYE-S 206
G++ + + G H + SW +++ D V ++
Sbjct: 269 GTLRI----------WHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK 318
Query: 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT 265
+ + F S GQ V D + + + K +++
Sbjct: 319 QNTLLALSI----VDGVPIFAGRI-SQDGQKYAVAFMDGQVNV--YDLKKL---NSKSRS 368
Query: 266 IP--NLYTISALSWKRDGSRIACGG 288
+ ++ L S +
Sbjct: 369 LYGNRDGILNPLPIPLYASYQSSQD 393
Score = 35.3 bits (82), Expect = 0.17
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 16/79 (20%)
Query: 226 FTVACSSPSGQAVVVGSYDN-IKL-----------FAWSPSKSVWEEQPNKTIPNL---- 269
+ + + G ++ +L W + P +
Sbjct: 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT 108
Query: 270 YTISALSWKRDGSRIACGG 288
++ L+W DG+ I G
Sbjct: 109 NQVTCLAWSHDGNSIVTGV 127
Score = 32.6 bits (75), Expect = 1.2
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 37/169 (21%)
Query: 149 SGHADGSI----VRYYVTEDASNFDQQQGRVVQHPVPP-----------YALSW-PAGYI 192
G + + E + ++HP L+W G
Sbjct: 63 YGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122
Query: 193 LAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 250
+ G + + ++ G + + ++ H + +V + G ++ +N L
Sbjct: 123 IVTGVENGELRLWNKTGALLNVLNF---H-RAPIVSVKWN-KDGTHIISMDVENVTIL-- 175
Query: 251 WSPS----KSVWEEQPNKTI--------PNLYTISALSWKRDGSRIACG 287
W+ +E + + + W D + G
Sbjct: 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Score = 32.2 bits (74), Expect = 1.7
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 38/124 (30%)
Query: 190 GYILAAGSD----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACS-------------S 232
ILA G R+ I E+D + + T F ++ S S
Sbjct: 58 ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117
Query: 233 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWKRDGSRI 284
G ++V G + ++L W NKT L I ++ W +DG+ I
Sbjct: 118 HDGNSIVTGVENGELRL--W-----------NKTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 285 ACGG 288
Sbjct: 165 ISMD 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 38.0 bits (89), Expect = 0.013
Identities = 23/215 (10%), Positives = 57/215 (26%), Gaps = 51/215 (23%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
G +Y A + Q + +H + + + G
Sbjct: 33 GYVYAFMDRFDEARASFQAL--------QQQAQ--KSGDHTAEHRALHQV---------G 73
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
+ + A C+ + +L + D L +
Sbjct: 74 MVERMAGNWDAARRCFL------EERELLASLP-----------EDPLAASANAYEVATV 116
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIY 1040
+ G A +++K++ Q ++ IA + L + K+ A+
Sbjct: 117 ALHFGDLAGARQ------EYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ--- 167
Query: 1041 SHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEI 1075
+ D++ + + A+ E + +
Sbjct: 168 ---QHWLRARDIFAELED---SEAVNELMTRLNGL 196
Score = 34.6 bits (80), Expect = 0.15
Identities = 20/213 (9%), Positives = 55/213 (25%), Gaps = 46/213 (21%)
Query: 994 SIKAKQW-KKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHC-DMHEQIVD 1051
+ +A + Q ++ + + L + + + A + ++ D
Sbjct: 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61
Query: 1052 -------------MYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERL 1098
+ G W+ A + + L E + +
Sbjct: 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL----------LASLPE-DPLAASANA 110
Query: 1099 ------YLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQ 1152
L G+ A ++ + + L ++ KN +
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSLV----YAQQADDQVAIA-CAFRGLGDLAQQEKNLLE 165
Query: 1153 AEKYYLDCNEWKLAIKMYRSLNLWEDAYRIALS 1185
A++++ A ++ L D+ +
Sbjct: 166 AQQHW------LRARDIFAELE---DSEAVNEL 189
Score = 32.6 bits (75), Expect = 0.60
Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 70/187 (37%)
Query: 710 DFGKAI-LYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDIST--THFLRE 766
F +A + +K + LH + + G+ FL E
Sbjct: 41 RFDEARASFQALQQQAQKS-----GDHTAEHRALHQV--GMV-ERMAGNWDAARRCFLEE 92
Query: 767 ---TIKIGEVWSKE----NNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDM 819
+ E + + L ++ A
Sbjct: 93 RELLASLPEDPLAASANAYEVAT-----------------------VALHFGDLAGARQE 129
Query: 820 YLKLYKWEDALSLAETNNYE------YNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTA 873
Y K +L A+ + + + L G+L ++E + A
Sbjct: 130 YEK------SLVYAQQADDQVAIACAFRGL-----------------GDLAQQEKNLLEA 166
Query: 874 LNYYLKA 880
++L+A
Sbjct: 167 QQHWLRA 173
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 38.4 bits (90), Expect = 0.014
Identities = 40/290 (13%), Positives = 81/290 (27%), Gaps = 64/290 (22%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
V + + +A SD I ++KL D + + + + W +
Sbjct: 14 VHDVVYDFYGRHVATCSSDQHIKVFKL--DKDTSNWELSDSWRAHDSSIVAIDWASPE-- 69
Query: 107 IYGQ------SDGKIK----------AAHVKANKTQTLYASNSFV--VALCLNVRGAGVL 148
YG+ D +K + + NK TL S + V G +
Sbjct: 70 -YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 149 SGHADGSIVRYYVTEDAS--NFDQQQGRVVQ------HPVPPYALSW----PAGYILAAG 196
DG + Y E + ++ V H + LSW + LA
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188
Query: 197 SDRIVTIYESDGRVHRIFDY-TAPHYKEREFT--------VACS---SPSGQAVVVGSYD 244
+ + + + + ++ + Q + G D
Sbjct: 189 AL--------EQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239
Query: 245 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 293
I++ + ++ + P + +L + D A G +
Sbjct: 240 GRIRI--FKITE---KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT 284
Score = 30.7 bits (70), Expect = 4.2
Identities = 7/70 (10%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 19 FNLDIVRLRSEGNVAGIWAWRGQNGRK-------SYVVKGLAFSPDSTKLAVAQSDNIIF 71
++D + V ++++ T L+ A D +
Sbjct: 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 72 IYK--LGDDW 79
++K +++
Sbjct: 332 LWKATYSNEF 341
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 38.0 bits (89), Expect = 0.020
Identities = 19/150 (12%), Positives = 36/150 (24%), Gaps = 49/150 (32%)
Query: 188 PAGYILAAGS--DRIVTIYE-SDGRVHRIFD-YTAPHYKEREFTVACS---SPSGQAVVV 240
G L + VT+YE R+ Y E +T A + + S + V
Sbjct: 31 KEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90
Query: 241 GSYDN-IKLF---------------------AWSPSKS-------------VWE---EQP 262
I++ + P +W +
Sbjct: 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150
Query: 263 NKTIPNLY----TISALSWKRDGSRIACGG 288
+ + + + G +I G
Sbjct: 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180
Score = 33.8 bits (78), Expect = 0.51
Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 30/139 (21%)
Query: 169 DQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTV 228
R++ Y + P S +I S +HR +Y V
Sbjct: 189 RINSKRMMNAIKESYDYN-PNKTNRPFISQKIHFPDFSTRDIHR--NY-----------V 234
Query: 229 ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISA-LSWKRD------ 280
C G ++ S +N I W P K + K + TI + +
Sbjct: 235 DCVRWLGDLILSKSCENAIVC--WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292
Query: 281 ------GSRIACGGLCGSV 293
+A G G +
Sbjct: 293 FSMDFWQKMLALGNQVGKL 311
Score = 32.2 bits (74), Expect = 1.6
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 226 FTVACS-SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI---PNLYTISALSWKRD 280
+ + S + + +G+ + + W + T+ I S+ RD
Sbjct: 289 WYMRFSMDFWQKMLALGNQVGKLYV--WDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346
Query: 281 GSRIACGG 288
S +
Sbjct: 347 SSILIAVC 354
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 38.2 bits (89), Expect = 0.021
Identities = 47/246 (19%), Positives = 91/246 (36%), Gaps = 44/246 (17%)
Query: 49 VKGLAFSPDSTK-LAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC---PVTTMVWLADG 104
GL+++P+ L A D+ I ++ + + +VI K I V + W
Sbjct: 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 105 PIIY--GQSDGKIKAAHVKANKT----QTLYASNSFVVALCLNVRGAGVL-SGHADGSIV 157
++ D K+ + N T T+ A + V L N +L +G AD ++
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 158 RYYVTEDASNFDQQQGRVVQH--PVPPYALSW-PAG-YILAAGS-DRIVTIY-------- 204
+ D N + H + + + W P ILA+ DR + ++
Sbjct: 304 LW----DLRNLKLKLHSFESHKDEI--FQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 205 -----ESDGRVHRIFDYTAPHYKEREFTVACS-SPSGQAVVV-GSYDN-IKLFAWSPSKS 256
DG +F H S +P+ ++ S DN +++ W +++
Sbjct: 358 QSTEDAEDGPPELLF----IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV--WQMAEN 411
Query: 257 VWEEQP 262
V+ ++
Sbjct: 412 VYNDEE 417
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.027
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 809 ENNEIHKAIDMYLKLYKWEDALSLA 833
E + K + LKLY + A +LA
Sbjct: 18 EKQALKK-LQASLKLYADDSAPALA 41
Score = 30.7 bits (68), Expect = 2.4
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 10/39 (25%)
Query: 1339 EKYKMNHMWNDALRVCGEYVPSKLPLLQQEYEKEINTNI 1377
EK + + +L++ Y P L I +
Sbjct: 18 EKQALKKL-QASLKL---YADDSAPALA------IKATM 46
Score = 29.9 bits (66), Expect = 3.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 12/38 (31%)
Query: 549 ERKQVHSQQENKKLAYLLDLHTICVIDLITNLPTLHIN 586
E++ + KKL L L+ D + P L I
Sbjct: 18 EKQAL------KKLQASLKLYA---DD---SAPALAIK 43
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 37.3 bits (87), Expect = 0.033
Identities = 48/405 (11%), Positives = 102/405 (25%), Gaps = 91/405 (22%)
Query: 811 NEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDH 870
E +A E + E+ E+ ++ Q EK
Sbjct: 3 MEFERAKAAV------ESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYF 56
Query: 871 QTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKA----GQIYEFT 926
T + + ++ + + ++++ +A G
Sbjct: 57 HTENPFKDWPGAFEEGLKRLKEGDL----PVTILFMEAAILQDPGDAEAWQFLGITQAEN 112
Query: 927 NENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGK 986
+ A+ + +C+ ++ P N+ A A Y
Sbjct: 113 ENEQAAIVALQ------RCL----ELQPNNLKA--------------LMALAVSYTNTSH 148
Query: 987 NNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMH 1046
A + K ++ VK + + +
Sbjct: 149 QQDACEA------LKNWIKQ------NPKYKYLVKNKKGSPGLTRRMSKSPVDS---SVL 193
Query: 1047 EQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLY---LIIG 1103
E + ++Y + + +G + +F A + L +
Sbjct: 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVL----------FHLSGEFNRAIDAFNAALTV- 242
Query: 1104 EPDLAI------SMFKNQRQYENMIKLVRNYH------PDLLDTTLLHLAQECEESKNYK 1151
P+ + N + E ++ Y P + + +L C Y+
Sbjct: 243 RPEDYSLWNRLGATLANGDRSEEAVE---AYTRALEIQPGFIR-SRYNLGISCINLGAYR 298
Query: 1152 QAEKYYL-------DCNEWKLAIKMYRSLNLWEDAYRIALSNGGQ 1189
+A +L + S N+W A RIALS Q
Sbjct: 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIW-AALRIALSLMDQ 342
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 37.6 bits (88), Expect = 0.034
Identities = 0/281 (0%), Positives = 0/281 (0%), Gaps = 84/281 (29%)
Query: 35 IW-AWRGQ-----NGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNK 88
+ A ++ + + ++
Sbjct: 92 LKFAQYTGAHAIAGRHTPGT-FTNQLQTSFSEPRLLILTDPRTDHQPIK--ESALGNIPT 148
Query: 89 FIQ-----QCPVTTMVWLADG--PIIYGQSDGKIKAAHVKANKTQTLYASNSFVVALCLN 141
+ A+ G + ++ +
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG--------------TIL 194
Query: 142 VRGAGVLSGHADG--SIVRYYVTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDR 199
+ + AA
Sbjct: 195 PGHKWDVMVDLFFYRDP---------------------------EEAKEQEEEEAALVA- 226
Query: 200 IVTIYESDGRVHRIFDYTAPHYKEREFT--------VACSSPSGQAVVVGSYDN-IKLFA 250
+ +Y AP A + P+ +
Sbjct: 227 -------PDYG-AVAEYAAPAADTWGGEWGTDAAAQPA-AIPAQAGADWTAAPAPAAG-- 275
Query: 251 WSPS----KSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 287
+
Sbjct: 276 GWDTAAAP 316
Score = 33.3 bits (77), Expect = 0.71
Identities = 10/263 (3%), Positives = 33/263 (12%), Gaps = 29/263 (11%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ--QCPVTTMVWLADGPI 106
G + I + + +Q + + D +
Sbjct: 28 HLGTKNCDFQMERY-VYKRRTDGI------YIINLGKTWEKLQLAARVIVAIENPQDIIV 80
Query: 107 IY-GQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYV- 161
+ A L + +
Sbjct: 81 QSARPYGQRAVLKFAQ--YTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPI 138
Query: 162 TEDASNFDQQQGRVVQ-HPVPPYALSW-PAG-YILAAGS-DRIVTIYE-SDGRVHRIFDY 216
E A P+ + + G ++
Sbjct: 139 KESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHK 198
Query: 217 TAPHYKERE-FTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTIS 273
+ + + + + +
Sbjct: 199 WDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAV--AEYAAP---AADTWGGEWGTDAAA 253
Query: 274 ALSWKRDGSRIACGGLCGSVELF 296
+ +
Sbjct: 254 QPAAIPAQAGADWTAAPAPAAGG 276
Score = 31.4 bits (72), Expect = 2.5
Identities = 11/200 (5%), Positives = 34/200 (17%), Gaps = 47/200 (23%)
Query: 110 QSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNF 168
++G A + + + + + + + +
Sbjct: 2 AAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQM-ERYVYKRRTD---------GIY 51
Query: 169 DQQQGRVVQ------HPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY 221
G+ + + A+ + +A R +
Sbjct: 52 IINLGKTWEKLQLAARVI--VAIENPQDIIVQSARPY--------GQRA-VLKF-AQYTG 99
Query: 222 KEREF--------TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL--- 269
T S + + P K
Sbjct: 100 AHAIAGRHTPGTFTNQLQ-TSFSEPRLLILTDPRTD--HQPIKESALGNIPTIAFCDTDS 156
Query: 270 -YTISALSWKRDG-SRIACG 287
+ + + + G
Sbjct: 157 PMRYVDIGIPANNKGKQSIG 176
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 37.2 bits (87), Expect = 0.034
Identities = 39/231 (16%), Positives = 73/231 (31%), Gaps = 43/231 (18%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKF-----------IQQCPVTT 97
V +AFSPD+ ++ A ++ I KL + G+ K + +
Sbjct: 121 VYSVAFSPDNRQILSAGAEREI---KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177
Query: 98 MVWLADGPIIY-GQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSI 156
P DG++K + T A S V L ++ G + +G D +
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 157 VRYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGSDRIVTIY--ESDGR 209
+ D Q +++ P +A G+D+ V I+ + +
Sbjct: 238 -LIW--------DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288
Query: 210 VHRIFDYTAPHYKEREFT--------VACSSPSGQAVVVGSYDN-IKLFAW 251
P K +A + G+ + G D I+ +
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAW-NALGKKLFAGFTDGVIRT--F 336
Score = 33.3 bits (77), Expect = 0.69
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNII---------FIYKLGDDWGDKKVICNKFIQQCPVT 96
+ +AF+P +AV +D + + + + T
Sbjct: 255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT 313
Query: 97 TMVWLADGPIIY-GQSDGKIK 116
++ W A G ++ G +DG I+
Sbjct: 314 SLAWNALGKKLFAGFTDGVIR 334
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 36.7 bits (86), Expect = 0.052
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 34/111 (30%)
Query: 1090 NKFKEAERLYL--------IIGE--PDLAISM------FKNQRQYENMIKLVR------- 1126
NK+K+A L +G+ P +A ++ + + +Y+ L +
Sbjct: 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 1127 ----NYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL 1173
HPD+ L +LA C+ Y++ E YY A+++Y++
Sbjct: 143 KVLGKDHPDVA-KQLNNLALLCQNQGKYEEVEYYYQR------ALEIYQTK 186
Score = 33.3 bits (77), Expect = 0.67
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 56/159 (35%)
Query: 1032 DYKTAEKIYSHCDMHEQIVDMYHQTGQWEKAY-----AIAEQHLNVGEIKATFIQKCKQL 1086
YK AE + ++ +++ EK +A+Q N+ +
Sbjct: 126 KYKEAEP------LCKRALEIR------EKVLGKDHPDVAKQLNNLALL----------C 163
Query: 1087 EEENKFKEAERLYL--------IIGE--PDLAISM------FKNQRQYENMIKLVR---- 1126
+ + K++E E Y +G P++A + + Q +++ L +
Sbjct: 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Query: 1127 --------NYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157
+ + +H + E K +
Sbjct: 224 RAHEREFGSVDDENK-PIWMHAEEREECKGKQKDGTSFG 261
Score = 32.5 bits (75), Expect = 1.1
Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 85/313 (27%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENH-DVVSQIVKGLIKNESYIKA 919
+Y + ++ A N A L E L ++H V + +
Sbjct: 76 ALVYRDQNKYKDAANLLNDA--------LAIREKTLGKDHPAVAA----------TLNNL 117
Query: 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYN--AA 977
+Y + ++A ++ +++ K+ L + DH KQ N A
Sbjct: 118 AVLYGKRGKYKEAEPLCKR------ALEIREKV-------LGK---DHPDVAKQLNNLAL 161
Query: 978 INHYIEAGKNNKALDTSIKAKQWKKAVQILQVI--TNKQDIAQHVKTLAQHFKTVKDYKT 1035
+ GK + +++A++I Q + ++A+ LA + +K
Sbjct: 162 L--CQNQGKYEEVE------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213
Query: 1036 AEKIYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEA 1095
AE ++++I+ H+ ++ E E + K K+
Sbjct: 214 AET------LYKEILTRAHEREFGSVDDENKPIWMHAEER----------EECKGKQKDG 257
Query: 1096 ERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYKQAEK 1155
+Y K + P + TTL +L ++ AE
Sbjct: 258 TSFG-----------------EYGGWYKACKVDSPTVT-TTLKNLGALYRRQGKFEAAET 299
Query: 1156 YYLDCNEWKLAIK 1168
+ +
Sbjct: 300 LEEAA----MRSR 308
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110;
OGT, glcnac, nucleoporin, O-linked glycosylation, TPR
repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 36.4 bits (85), Expect = 0.065
Identities = 54/417 (12%), Positives = 112/417 (26%), Gaps = 112/417 (26%)
Query: 916 YIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYN 975
++ + E A + + P N L + ++ +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQ----------LWRQEPDNTGVLLLL-SSIHFQCRRLD 50
Query: 976 AAINHYIEAGK---------NNKALDTSIKAKQWKKAVQIL-QVITNKQDIAQHVKTLAQ 1025
+ + A K +N + Q ++A++ + K D LA
Sbjct: 51 RSAHFSTLAIKQNPLLAEAYSNLGN-VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109
Query: 1026 HFKTVKDYKTAEKIYSHC--------DMHEQIVDMYHQTGQWEKAYAI-----------A 1066
D + A + Y + + ++ G+ E+A A A
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169
Query: 1067 EQHLNVGEIKATFIQKCKQLEEENKFKEAERLYL--IIGEPDLAIS------MFKNQRQY 1118
N+G + + + A + + +P+ + + K R +
Sbjct: 170 VAWSNLGCV----------FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219
Query: 1119 ENMIKLVRN---YHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKM------ 1169
+ + P+ +LA E A Y + AI++
Sbjct: 220 DRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTY------RRAIELQPHFPD 272
Query: 1170 --------YRSLNLWEDA---YRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLL 1218
+ +A Y AL L A L N ++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR-----------------LCPTHADSLNNLANIK 315
Query: 1219 ESCISNACDTYQFDFAFELAK--IGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
+ + A L + + + + H A VL+ G+ EA + +A
Sbjct: 316 R-------EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
Score = 33.7 bits (78), Expect = 0.50
Identities = 74/490 (15%), Positives = 131/490 (26%), Gaps = 160/490 (32%)
Query: 699 LIEFGTAVHDS-DFGKAI-LYLESLGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALG 756
+E + + DF A ++ L+ + Q L +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFS---- 56
Query: 757 DISTTHFLRETIKIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKA 816
IK +P E ++ + +Y E ++ +A
Sbjct: 57 --------TLAIKQ-----------NP-LLAEAYSNLGN----------VYKERGQLQEA 86
Query: 817 IDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNY 876
I+ Y AL L Y L GD + A+
Sbjct: 87 IEHYRH------ALRLKPDFIDGYINL-----------------AAALVAAGDMEGAVQA 123
Query: 877 YLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECY 936
Y+ A L N D+ G + + E+A CY
Sbjct: 124 YVSA---------------LQYNPDLY----------CVRSDLGNLLKALGRLEEAKACY 158
Query: 937 RKGKVYDKCIDLTRKINPKNVTALEEEW---GDHLIENKQYNAAINHYIEA--------- 984
K I + P A W G + AI+H+ +A
Sbjct: 159 L------KAI----ETQPNFAVA----WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204
Query: 985 GKNNKALDTSIKAKQWKKAVQIL-QVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHC 1043
N +A+ + +AV + ++ + A LA + A Y
Sbjct: 205 AYINLGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY--- 260
Query: 1044 DMHEQIVDMYHQTGQWEKAYAI----AEQHLNVGEIKATFIQKCKQLEEENKFKEAERLY 1099
+A + + + N+ L+E+ EAE Y
Sbjct: 261 ----------------RRAIELQPHFPDAYCNLANA----------LKEKGSVAEAEDCY 294
Query: 1100 ---LIIGEPDLAIS------MFKNQRQYENMIKLVR---NYHPDLLDTTLLHLAQECEES 1147
L + P A S + + Q E ++L R P+ +LA ++
Sbjct: 295 NTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQ 352
Query: 1148 KNYKQAEKYY 1157
++A +Y
Sbjct: 353 GKLQEALMHY 362
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 36.6 bits (85), Expect = 0.066
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 21/163 (12%)
Query: 138 LCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQH--PVPPYALSWPAGYILAA 195
+N + ++ + G D+ V H PV A ++A+
Sbjct: 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS 99
Query: 196 GS-DRIVTIYE--SDGRVHRIFDYTAP---HYKEREFTVACSSPSGQAVVV-GSYDN-IK 247
GS D V ++E G V + + H K R VA P+ Q V++ DN I
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-RVGIVAWH-PTAQNVLLSAGCDNVIL 157
Query: 248 LFAWSPSKSVWEEQPNKTIPNL---YTISALSWKRDGSRIACG 287
+ W V T+ TI ++ W RDG+ I
Sbjct: 158 V--WD----VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Score = 33.5 bits (77), Expect = 0.64
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 18/168 (10%)
Query: 48 VVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFI--QQCPVTTMVWLADGP 105
+ + +S D + + D + + + V+ K + V++++G
Sbjct: 178 TIYSVDWSRDGALICTSCRDKRVRVI----EPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233
Query: 106 II----YGQSDGKIK---AAHVKANKTQTLYASNSFVVALCLNVRGAGV-LSGHADGSIV 157
I+ S+ ++ H++ + ++S V+ + V L G D SI
Sbjct: 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI- 292
Query: 158 RYY-VTEDASNFDQQQGRVVQHPVPPYALSWPAGYILAAGSDRIVTIY 204
RY+ +T +A + + L I Y
Sbjct: 293 RYFEITSEAPFLHYLSMF--SSKESQRGMGYMPKRGLEVNKCEIARFY 338
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 36.8 bits (85), Expect = 0.067
Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 28/218 (12%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
+ ++G + A++ Y+KA+ S +VQ ++VK L +
Sbjct: 39 AKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA----ANTSGNWEELVKYLQMARKKARES 94
Query: 921 QIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINH 980
+ E E K ++ +L IN N +++ GD + K Y+AA
Sbjct: 95 YV-----ETELIF-ALAK---TNRLAELEEFINGPNNAHIQQV-GDRCYDEKMYDAAKLL 144
Query: 981 YIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQ-HFKTV--KDYKTAE 1037
Y + T + +++ AV + A +T + F V K+++ A+
Sbjct: 145 YNNVSNFGRLASTLVHLGEYQAAVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQ 197
Query: 1038 K----IYSHCDMHEQIVDMYHQTGQWEKAYAIAEQHLN 1071
I H D E++++ Y G +E+ + E L
Sbjct: 198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 235
Score = 32.2 bits (73), Expect = 1.7
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 27/169 (15%)
Query: 787 PELWARMAILNKQFKVAEGIYLENNEIHKAIDMYLKLYKWEDALSLAE-TNNYEYNELKK 845
P +W+++A L+ + +AID Y+K +D S E + +
Sbjct: 32 PAVWSQLA----------KAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWE 78
Query: 846 KYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDV-VS 904
+ +K+L R++ + E + + +K L + E ++ ++ +
Sbjct: 79 ELVKYLQMARKKAR-----ESYVETELIFAL-------AKTNRLAELEEFINGPNNAHIQ 126
Query: 905 QIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKIN 953
Q+ + Y A +Y + + Y +D RK N
Sbjct: 127 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 175
Score = 31.4 bits (71), Expect = 3.2
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 1232 DFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKANKP---KEAISMYIHNQD 1288
D A+E A+ + V + A G EA +IKA+ P E + + +
Sbjct: 20 DRAYEFAE---RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGN 76
Query: 1289 WENAER---IANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDL--IIEKYKM 1343
WE + +A + S + L + ++ E + + + + ++
Sbjct: 77 WEELVKYLQMARKKARESYVETEL--IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 134
Query: 1344 NHMWNDA 1350
M++ A
Sbjct: 135 EKMYDAA 141
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping,
cell membrane, cell outer membrane, cell projection,
fimbrium, membrane; 2.85A {Yersinia pestis}
Length = 90
Score = 33.8 bits (78), Expect = 0.067
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 171 QQGRVV-QHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY 221
+ G V VP + + V I+ESDG +T P+
Sbjct: 33 RDGYTVSNELVPSGPFELANLPLGGGSGELKVIIHESDGTKQV---FTVPYD 81
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 35.9 bits (83), Expect = 0.092
Identities = 17/218 (7%), Positives = 51/218 (23%), Gaps = 34/218 (15%)
Query: 51 GLAFSPDSTKLAVA-QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWL-ADGPIIY 108
+ +PD ++ + + K I I + + +G +
Sbjct: 88 DVDITPDDQFAVTVTGLNHPFNMQSY--SFLKNKFI--STIPIPYDAVGIAISPNGNGLI 143
Query: 109 ---GQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDA 165
S ++ + A+ DG+ +V
Sbjct: 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGG--TRPFNITF---TPDGN--FAFVANLI 196
Query: 166 SN----FDQQQGRVVQHPVPPYALSWPAG----------YILAAGSDRIVTIYESDGRVH 211
N + Q + + P Y+L + + + G +
Sbjct: 197 GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256
Query: 212 RIFDYTAPHYKEREFTVACS----SPSGQAVVVGSYDN 245
+ + + + + + + + + +
Sbjct: 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 36.0 bits (84), Expect = 0.094
Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 45/226 (19%)
Query: 49 VKGLAFSPDSTKLAVAQSDNII--------FIYKL-G-DDWGDKKVICNKFIQQCPVTTM 98
V + ++ + D I + L G +DW V + P
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW----VSQVRV---VPNEK- 161
Query: 99 VWLADGPIIY-GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSI 156
D I +D +KA ++ + NS + L + G + S DG I
Sbjct: 162 -ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 157 VRYYVTEDASNFDQQQGRVVQ-----HPVPPYALSWPAGYILAAGSDRIVTIYESDGR-- 209
+ + + + V A S P Y LAA + + ++ D +
Sbjct: 221 -MLW--------NLAAKKAMYTLSAQDEVFSLAFS-PNRYWLAAATATGIKVFSLDPQYL 270
Query: 210 VHRIFDYTAPHYKERE---FTVACSSPSGQAVVVGSYDN-IKLFAW 251
V + A + K E ++A S GQ + G DN I++ W
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWS-ADGQTLFAGYTDNVIRV--W 313
Score = 31.7 bits (73), Expect = 1.8
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 232 SPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN---LYTISALSWKRDGSRIACGG 288
SP+ + + IK+F+ P V + +P + +L+W DG + G
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Score = 30.6 bits (70), Expect = 4.6
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW--GDKKVICNKFIQQCPVTTMVWLAD 103
+ + L SPD T +A A D I L W KK + Q V ++ + +
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEI---ML---WNLAAKKAM-YTLSAQDEVFSLAFSPN 248
Query: 104 GPIIYGQSDGKIK---------AAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADG 154
+ + IK ++ A+ V+L + G + +G+ D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 155 SI 156
I
Sbjct: 309 VI 310
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110
kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 36.3 bits (83), Expect = 0.10
Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 36/194 (18%)
Query: 1157 YLDCNEWKLAIKMYRSLNLWEDAYRIALSNGG---------QEAVEPVVYLWAKSLGGDS 1207
+ + A+++YR + A SN QEA+ Y A +
Sbjct: 19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH--YKEAIRISPTF 76
Query: 1208 AVRLLNRLSLLESCISNACDTYQFDFAFELAK--IGMKSKLEEVHYKYALVLEDNGQFNE 1265
A N + L+ + A + I + + H A + +D+G E
Sbjct: 77 ADAYSNMGNTLK-------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 1266 AETQFIKA--NKPKEA------ISMYIHNQDWENAE--------RIANEHDPTSIGDILL 1309
A + A KP DW + + +A++ + + +
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHP 189
Query: 1310 NQSKCEFENENFSK 1323
+ S + F K
Sbjct: 190 HHSMLYPLSHGFRK 203
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Length = 283
Score = 35.2 bits (82), Expect = 0.15
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 34/111 (30%)
Query: 1090 NKFKEAERLYL--------IIGE--PDLAISM------FKNQRQYENMIKLVR------- 1126
NK+KEA L +G+ P +A ++ + + +Y+ L +
Sbjct: 57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116
Query: 1127 ----NYHPDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSL 1173
+HPD+ L +LA C+ ++ E YY A+++Y +
Sbjct: 117 KVLGKFHPDVA-KQLNNLALLCQNQGKAEEVEYYYRR------ALEIYATR 160
Score = 33.7 bits (78), Expect = 0.42
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 29/95 (30%)
Query: 1091 KFKEAERLYL--------IIGE--PDLAISM------FKNQRQYENMIKLVR-------- 1126
K +E E Y +G P++A + + Q +Y++ L +
Sbjct: 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201
Query: 1127 ----NYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157
+ + D +H + E + + Y
Sbjct: 202 KEFGSVNGDNK-PIWMHAEEREESKDKRRDSAPYG 235
Score = 33.3 bits (77), Expect = 0.66
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 27/93 (29%)
Query: 1091 KFKEAERLYL---------IIGE--PDLAISM------FKNQRQYEN---------MIKL 1124
K+++AE LY G D +++ + + K
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 1125 VRNYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157
+ P + TTL L + A
Sbjct: 244 CKVDSPTVN-TTLRSLGALYRRQGKLEAAHTLE 275
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 35.3 bits (82), Expect = 0.18
Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 46/234 (19%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ-----QCPVTTMVWLAD 103
+ + ++ I K+ D N + +T + +
Sbjct: 100 TAVDTAKLQMRRFILGTTEGDI---KV---L-D--SNFNLQREIDQAHVSEITKLKFFPS 150
Query: 104 GPIIY-GQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSI----- 156
G + D ++K VK +TL + V + + RG VLS DG+I
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 157 --------------VRYYVTEDASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGS-DRI 200
V A + L + G + AG +
Sbjct: 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV 270
Query: 201 VTI--YESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 251
+T+ S + ++ + ++ + + G + + W
Sbjct: 271 ITVHNVFSKEQTIQLPS----KFTCSCNSLTVDGNNANYIYAGYENGMLAQ--W 318
Score = 34.1 bits (79), Expect = 0.43
Identities = 33/263 (12%), Positives = 68/263 (25%), Gaps = 68/263 (25%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC-PVTTMVWLADGPII 107
KG F + L A+ D F+ + +K +++
Sbjct: 59 GKGNTFEKVGSHLYKARLDGHDFL------FNTIIRDGSKMLKRADYTAVDTAKLQMRRF 112
Query: 108 Y-GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSI----VRYYV 161
G ++G IK N + A S + L G ++S D + V
Sbjct: 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV---- 168
Query: 162 TEDASNFDQQQGRVVQ------HPVPPYALSW-PAGYILAAGS-DRIVTIYE-SDGRVHR 212
+ G + V ++ G + + S D + ++E G
Sbjct: 169 ---------KDGSNPRTLIGHRATV--TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217
Query: 213 IFDYTAPH--YKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLY 270
F+ + ++A + + + S +
Sbjct: 218 TFN---RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT----------------- 257
Query: 271 TISALSWKRDGSRIACGGLCGSV 293
G + G + G +
Sbjct: 258 ---------YGKYVIAGHVSGVI 271
Score = 32.6 bits (75), Expect = 1.0
Identities = 16/157 (10%), Positives = 39/157 (24%), Gaps = 27/157 (17%)
Query: 144 GAGVLSGHADGSIVRYY-VTEDASNFDQQQGRVVQH-----PVPPYALSWPAGYILAAGS 197
VL + + Y V ++ + + + V+ + G L
Sbjct: 17 FKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFE-KVGSHLYKAR 75
Query: 198 -DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK 255
D ++ + R + + ++G+ + IK+
Sbjct: 76 LDGHDFLFNTIIRDGS---KMLKR-ADYTAVDTAK-LQMRRFILGTTEGDIKV------- 123
Query: 256 SVWEEQPNKTIPNL----YTISALSWKRDGSRIACGG 288
+ N I+ L + G +
Sbjct: 124 --LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS 158
Score = 32.2 bits (74), Expect = 1.5
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 223 EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV--WEEQPNKTIPNLYTISAL---SW 277
+ TVA +AV+ + +N F + K++ +E + N + A ++
Sbjct: 5 TKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTF 64
Query: 278 KRDGSRIACGGLCGSVELFE 297
++ GS + L G LF
Sbjct: 65 EKVGSHLYKARLDGHDFLFN 84
Score = 30.7 bits (70), Expect = 4.2
Identities = 23/254 (9%), Positives = 61/254 (24%), Gaps = 69/254 (27%)
Query: 13 VLQDDVFNLDIVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFI 72
D V + + L F + +I
Sbjct: 218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSK----KNNLEFGTYGKYVIAGHVSGVI-- 271
Query: 73 YKLGDDWGDKKVICNKFIQQCPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASN 132
+ + V + + ++ +
Sbjct: 272 -TV---H-N-------------VFS-----------KEQTIQLPSKF------------T 290
Query: 133 SFVVALCLNVR-GAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQH---PVPPYALSWP 188
+L ++ + +G+ +G + ++ D + + G + + P+ + +
Sbjct: 291 CSCNSLTVDGNNANYIYAGYENGMLAQW----DLRSPECPVGEFLINEGTPI--NNVYFA 344
Query: 189 AGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFT-----VACSS---PSGQAV 238
AG + + D + + SD R S +G+ +
Sbjct: 345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404
Query: 239 VVGSYDNIKLFAWS 252
VG + L ++
Sbjct: 405 EVGKNNFCAL--YN 416
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 35.3 bits (82), Expect = 0.18
Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 39/188 (20%)
Query: 126 QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQH------P 179
+ + L++ V + YY+ + + ++ +
Sbjct: 9 NQRANHSKPIPPFLLDLDSQSVPDALKKQTN-DYYILYNPA-LPREIDVELHKSLDHTSV 66
Query: 180 VPPYALSW-PAGYILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVACS----- 231
V + + G LA G ++ +Y SDG V R+ D +A + + S
Sbjct: 67 V--CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 124
Query: 232 -------SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKR 279
SP G+ + G+ D I++ W+ + K + L I +L +
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRI---------WDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 280 DGSRIACG 287
G ++ G
Sbjct: 176 SGDKLVSG 183
Score = 30.7 bits (70), Expect = 4.9
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 232 SPSGQAVVVGSYDN-IKLFAW--SPSKSVWEEQPNKTIPNLYT-------ISALSWKRDG 281
+ GQ+VV GS D +KL W + + + + + T + +++ ++
Sbjct: 265 TRDGQSVVSGSLDRSVKL--WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 322
Query: 282 SRIACG 287
I G
Sbjct: 323 EYILSG 328
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein,
peroxin 5, PEX5, PTS1 binding domain, protein-peptide
complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A
3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 35.0 bits (81), Expect = 0.20
Identities = 45/352 (12%), Positives = 95/352 (26%), Gaps = 79/352 (22%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEW---GDHLIE 970
E+ ++ G +A ++ + P+ A W G E
Sbjct: 22 ENPMEEGLSMLKLANLAEAALA------FEAVC----QAAPEREEA----WRSLGLTQAE 67
Query: 971 NKQYNAAINHYIEAGK---------NNKALDTSIKAKQWKKAVQIL-QVITNKQDIAQHV 1020
N++ AI A A+ + A+ L + ++ Q
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAV-SHTNEHNANAALASLRAWLLSQPQYEQLG 126
Query: 1021 KTLAQHFKTVKDYKTAEKIYSHCDM--HEQIVDMYHQTGQWEKAYAIAEQHLNVGEIKAT 1078
Q + D + + + + + H + A H ++G +
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL--HASLGVL--- 181
Query: 1079 FIQKCKQLEEENKFKEAERLYL--IIGEPDLAI------SMFKNQRQYENMIKLVRNYH- 1129
N + A + PD A + N + + + Y+
Sbjct: 182 -------YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD---AYNR 231
Query: 1130 -----PDLLDTTLLHLAQECEESKNYKQAEKYYLDCNEWKLAIKMYRSLNLWEDAYRIAL 1184
P + + ++A Y A K + AI M +
Sbjct: 232 ALDINPGYVR-VMYNMAVSYSNMSQYDLAAKQLVR------AIYM-------QVGGTTPT 277
Query: 1185 SNGGQEAVEPVVYLWAKSLGGDSAVRLLNRLSLLESCISNACDTYQFDFAFE 1236
+EA +W + ++NR L+E + + + +F +
Sbjct: 278 GEASREATR---SMWD-FFR--MLLNVMNRPDLVELTYAQNVEPFAKEFGLQ 323
Score = 32.3 bits (74), Expect = 1.4
Identities = 19/179 (10%), Positives = 37/179 (20%), Gaps = 63/179 (35%)
Query: 861 GELYEKEGDHQTALNYYLKA-----NFTSKACNLVQNEPYLLENHDVVSQIVKGLIKN-- 913
+ E + AL + +Q + + + +
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 914 ---ESYIKA--------------GQIYEFTNENEKALECYRK------------------ 938
A G +Y +N + A R+
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 939 ----GKV------YDKCIDLTRKINPKNVTALEEEW---GDHLIENKQYNAAINHYIEA 984
+ Y++ + INP V QY+ A + A
Sbjct: 216 LANGNRPQEALDAYNRAL----DINPGYVRV----MYNMAVSYSNMSQYDLAAKQLVRA 266
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia
sympodialis}
Length = 334
Score = 34.8 bits (79), Expect = 0.24
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 17/148 (11%)
Query: 23 IVRLRSEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDK 82
I R+ ++G +AW NG + G+ F P S KL + + + +
Sbjct: 161 IARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWP 220
Query: 83 KVICNKFIQQCPVTTMVWLADGP--IIYGQSDGKIKAAHVKANKTQTLY-------ASNS 133
+ + + G I+ + +A + A+
Sbjct: 221 EPV--------KINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIK 272
Query: 134 FVVALCLNVRGAGVLSGHADGSIVRYYV 161
L G ++ + GS Y
Sbjct: 273 KTKRSELQNSGFTAVADYYQGSEQGLYA 300
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein,
ABC transport system; HET: GOL; 2.10A {Burkholderia
pseudomallei}
Length = 506
Score = 34.9 bits (81), Expect = 0.26
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 884 SKACNLVQNEPYLLENHDVVSQIVKGLIKNESY-----IKAGQI-YEFTNENEKALECYR 937
++ N+V N PY L + ++IV + K++ Y + ++ Y +E AL Y+
Sbjct: 170 TRPKNIVSNGPYTLVDWQPNNRIV--MAKSDKYWNARNVVIRKVTYLPIENDETALRMYQ 227
Query: 938 KGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALD 992
G+ ID T I + +++G L + +Y ++ AL
Sbjct: 228 AGQ-----IDYTYSIPAGGFGQISKQFGKEL---RPGLQLATYYYYLKNSDPALK 274
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 34.9 bits (80), Expect = 0.28
Identities = 49/288 (17%), Positives = 85/288 (29%), Gaps = 60/288 (20%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQ-----QCPVTTMVW--L 101
+ +LA SD I K+ + + + +K I + PV + W
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTI---KI---F-EVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 102 ADGPIIY-GQSDGKIK---AAHVKANKTQTLYASNSFV--VALCLNVRGAGVLSGHADGS 155
G I+ DGK+ + + ++ ++ V V + G +L +DG
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 156 IVRYYVTEDASNFDQQQGRVVQHPVPPYALSW-PA-------------GYILAAGSDRIV 201
+ V E N + H + + SW PA G
Sbjct: 125 V---SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--- 178
Query: 202 TIYESDGRVHRIFDYTAPHYKEREF-----------TVACS--SPSGQAVVVGSYDN-IK 247
D V +I+ Y + VA S + S D
Sbjct: 179 -----DNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 248 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 295
++ + W++ K + SW G+ +A G V L
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 33.3 bits (76), Expect = 0.30
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 31/133 (23%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRK------------------------GKVYDKCIDLT 949
E + G+ Y + N+ +L YR+ + + +
Sbjct: 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
Query: 950 RK---INPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQI 1006
K ++ +TAL Y AI + + I Q +++ +
Sbjct: 105 DKALALDSNEITAL-MLLASDAFMQANYAQAIELWQKV---MDLNSPRINRTQLVESINM 160
Query: 1007 LQVITNKQDIAQH 1019
+++ + D+ H
Sbjct: 161 AKLLQRRSDLEHH 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 32.7 bits (75), Expect = 0.37
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 40/133 (30%)
Query: 854 TRQEDKAGELYE------KEGDHQTALNYY---LKANFTSK----------ACNLVQNEP 894
T +L + K GD+ AL Y L + T + AC+L
Sbjct: 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK---- 77
Query: 895 YLLENHD-VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLT 949
LE++D ++ K + K+ +KA Q E ++A+ ++
Sbjct: 78 --LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC---------- 125
Query: 950 RKINPKNVTALEE 962
+ PKN E
Sbjct: 126 VSLEPKNKVFQEA 138
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 32.5 bits (74), Expect = 0.45
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 1209 VRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAET 1268
R ++ S+ ++F IG + ++ +A LE G+ A
Sbjct: 68 PRFISYCLKFAEYNSDLHQFFEF---LYNHGIG--TLSSPLYIAWAGHLEAQGELQHASA 122
Query: 1269 QFIKA 1273
+
Sbjct: 123 VLQRG 127
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 33.6 bits (76), Expect = 0.47
Identities = 33/280 (11%), Positives = 75/280 (26%), Gaps = 45/280 (16%)
Query: 51 GLAFSPDSTKLAVA--QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTT-----MVWLAD 103
+P +S++++ I D + + + D
Sbjct: 38 VPMVAPGGRIAYATVNKSESLVKI-----DLVTGETLGRIDLSTPEERVKSLFGAALSPD 92
Query: 104 GPIIY--------GQSDGKIKAAHVKANKTQTLYASNSFVVALCLNVRGAGVLSGHADGS 155
G + + +++ V +TL +F R +L+ DGS
Sbjct: 93 GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----RQITMLAWARDGS 147
Query: 156 IVRYYVTEDASNFDQQQGRV-----VQHPVPPYALS------WPAGYILAAGSDRIVTIY 204
+ Y + D D + G + +Q W + T
Sbjct: 148 KL-YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR 206
Query: 205 ESDGRVHRIFDYTAPH---YKEREFTVACSSPSGQAV--VVGSYDNIKLFAWSPSKSVWE 259
+ T + E + + + F ++
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD 266
Query: 260 EQPNKTIPNL---YTISALSWKRDGSRIACGGLCGSVELF 296
+ N +I + ++ +++ DGS + GG G + +
Sbjct: 267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 33.6 bits (78), Expect = 0.49
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIY-----KLGDDWGDKKVICNKFIQQCPVTTMVWLAD 103
+ L FSP+ L A + I I+ + D+ + + + + T++ W AD
Sbjct: 259 INALCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317
Query: 104 GPIIY-GQSDGKIK 116
G ++ G +D ++
Sbjct: 318 GQTLFAGYTDNLVR 331
Score = 33.2 bits (77), Expect = 0.69
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 188 PAGYILAAGSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACS----SPSGQAVVVGS 242
P Y L A + + I++ + + + C+ S GQ + G
Sbjct: 266 PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 243 YDN-IKLFAW 251
DN +++ W
Sbjct: 326 TDNLVRV--W 333
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 31.5 bits (72), Expect = 0.53
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 25/79 (31%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
+ + K + AL + + + + Y+ +Y G
Sbjct: 14 AQEHLKHDNASRALALFEEL--------VETDPDYV-----------------GTYYHLG 48
Query: 921 QIYEFTNENEKALECYRKG 939
++YE + + A++ Y +G
Sbjct: 49 KLYERLDRTDDAIDTYAQG 67
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase,
protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Length = 695
Score = 33.7 bits (78), Expect = 0.61
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 16/94 (17%)
Query: 45 KSYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW--------GDKKVICNKFIQQCPVT 96
+ + A S D K+A AQ N D + I+
Sbjct: 119 GTVSLGTWAVSWDGKKVAFAQKPN-------AADEAVLHVIDVDSGEWSKVDVIEGGKYA 171
Query: 97 TMVWLADGP-IIYGQSDGKIKAAHVKANKTQTLY 129
T W D Y + T+
Sbjct: 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 31.8 bits (73), Expect = 0.63
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 31/112 (27%)
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLEN-----------HDVVSQIVKGLIKNE 914
K+GD+ TA+ +Y ++A L N + + +
Sbjct: 25 KKGDYPTAMRHY------NEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78
Query: 915 SYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEE 962
+IK E KA Y +++P N A E
Sbjct: 79 KFIKGYIRKAACLVAMREWSKAQRAYEDA----------LQVDPSNEEAREG 120
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 33.2 bits (76), Expect = 0.70
Identities = 27/182 (14%), Positives = 49/182 (26%), Gaps = 38/182 (20%)
Query: 51 GLAFSPDSTKLAVA-QSDNIIFIYKLGDDWGDKKVICNKFIQQCPVTTMVWLA---DGPI 106
GLA + +L +I I D +K + K + + ++
Sbjct: 189 GLALDSEGKRLYTTNADGELITI----DTADNKILSRKKLLDDGKEHFFINISLDTARQR 244
Query: 107 IY--GQSDGKIKAAHVKANK-TQTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTE 163
+ ++ + + A S V + + YVT
Sbjct: 245 AFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLF------------NPARNEA--YVTH 290
Query: 164 DASN----FDQQQGRVVQH-PVPPY----ALSWPAG---YILAAGSDRIVTIYESDGRVH 211
+ D + +VV+ P + ALS G Y+ V
Sbjct: 291 RQAGKVSVIDAKSYKVVKTFDTPTHPNSLALS-ADGKTLYVSVKQKSTKQQEATQPDDVI 349
Query: 212 RI 213
RI
Sbjct: 350 RI 351
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding
proteins, murein tripeptide, periplasmi protein; HET:
MHI; 2.07A {Escherichia coli}
Length = 519
Score = 33.4 bits (77), Expect = 0.75
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 885 KACNLVQNEPYLLENHDVVSQIVKGLIKNESY-----IKAGQI-YEFTNENEKALECYRK 938
K NL+ N Y+L+ V ++V ++ N Y ++ + N+ A + Y
Sbjct: 184 KPGNLIGNGAYVLKERVVNEKLV--VVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLA 241
Query: 939 GKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQY 974
G ID+T L ++ + Q
Sbjct: 242 GD-----IDITESFPKNMYQKLLKDIPGQVYTPPQL 272
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 32.9 bits (76), Expect = 0.79
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 22/133 (16%)
Query: 126 QTLYASNSFVVALCLNVRGAGVLSGHADGSIVRYYVTEDASNFDQQQGRVVQ------HP 179
+Y F+ ++C + +L G D I + F +
Sbjct: 53 TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL------FATSGEDPLYTLIGHQGN 106
Query: 180 VPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV 239
V +LS+ G +++ D+ +++ V+ + + A + S S +
Sbjct: 107 V--CSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVW-----DAKVVSFSENKFL 159
Query: 240 VGSYDN-IKLFAW 251
S D IKL W
Sbjct: 160 TASADKTIKL--W 170
Score = 31.3 bits (72), Expect = 2.2
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 14/65 (21%)
Query: 229 ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSR 283
+ V S D ++L W + +Y ++++ + +
Sbjct: 23 DVVAVDDSKVASVSRDGTVRL---------WSKDDQWLGTVVYTGQGFLNSVCYDSEKEL 73
Query: 284 IACGG 288
+ GG
Sbjct: 74 LLFGG 78
Score = 31.3 bits (72), Expect = 2.5
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGD 77
+ + + + L D +I L
Sbjct: 62 LNSVCYDSEKELLLFGGKDTMINGVPLFA 90
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 32.5 bits (75), Expect = 0.82
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 912 KNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIEN 971
K+ + + I EK L+ + +NP+ E G
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKA------EAEA----YVNPEKAEEARLE-GKEYFTK 152
Query: 972 KQYNAAINHYIEA 984
+ A+ Y E
Sbjct: 153 SDWPNAVKAYTEM 165
Score = 29.8 bits (68), Expect = 6.2
Identities = 25/218 (11%), Positives = 47/218 (21%), Gaps = 89/218 (40%)
Query: 805 GIYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELY 864
I + K + + E G+ Y
Sbjct: 113 DILTKLRNAEKELKKAEA------EAYVNPEKAEEARLE-----------------GKEY 149
Query: 865 EKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIK-NESYIKA---- 919
+ D A+ Y + IK +
Sbjct: 150 FTKSDWPNAVKAYTEM------------------------------IKRAPEDARGYSNR 179
Query: 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEW---GDHLIENKQYNA 976
+A+ +K I + +P V A + I K+Y +
Sbjct: 180 AAALAKLMSFPEAIAD------CNKAI----EKDPNFVRA----YIRKATAQIAVKEYAS 225
Query: 977 AINHYIEA---------GKNNKALDTSIKAKQWKKAVQ 1005
A+ A G + + + + + KA Q
Sbjct: 226 ALETLDAARTKDAEVNNGSSAREI-----DQLYYKASQ 258
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 32.8 bits (74), Expect = 0.92
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 18/104 (17%)
Query: 51 GLAFSPDSTKLAVAQS-DNIIFIYKLGDDWGDKKVIC-----------------NKFIQQ 92
G+ SPD + +A+ + I +Y+ +W + + ++
Sbjct: 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284
Query: 93 CPVTTMVWLADGPIIYGQSDGKIKAAHVKANKTQTLYASNSFVV 136
P ++ D G +I+ + K +YA N V+
Sbjct: 285 HPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL 328
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 32.6 bits (75), Expect = 0.92
Identities = 29/275 (10%), Positives = 70/275 (25%), Gaps = 65/275 (23%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQ 973
+ + N +A+E + K + + E +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLE----------AKKYNSPYIYNRR-AVCYYELAK 52
Query: 974 YNAAI---NHYIEAGKNNKALDTS--------IKAKQWKKAVQIL-QVITNKQDIAQHVK 1021
Y+ A Y KA +K Q A+Q +
Sbjct: 53 YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112
Query: 1022 TLAQHFKTVKDYKTAEKIYS--------HCDMHEQIVDMYHQTGQWEKAYA--------- 1064
+ +F ++ A + + ++ Y+ ++ KA +
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172
Query: 1065 --IAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENMI 1122
I +L + + K A+ Y + I +
Sbjct: 173 PNIYIGYLWRARAN-------AAQDPDTKQGLAKPYY------EKLIEVCAPGGAK---- 215
Query: 1123 KLVRNYHPDLLDTTLLHLAQECEESKNYKQAEKYY 1157
Y +L++ ++A +++ +A+ +
Sbjct: 216 -----YKDELIE-ANEYIAYYYTINRDKVKADAAW 244
Score = 31.5 bits (72), Expect = 2.0
Identities = 28/220 (12%), Positives = 52/220 (23%), Gaps = 88/220 (40%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
I ++ + AI Y A+ T Y ++ G +
Sbjct: 83 ILMKKGQDSLAIQQYQA------AVDRDTTRLDMYGQI-----------------GSYFY 119
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEF 925
+G+ A+ Y K ++ + + + GQ Y +
Sbjct: 120 NKGNFPLAIQYMEKQ---------IRPTTTD----------------PKVFYELGQAYYY 154
Query: 926 TNENEKALECYRK---------------GKV----------------YDKCIDLTRKINP 954
E KA + K + Y+K I++
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
Query: 955 KNVTALEEEW---GDHLIENKQYNAAINHYIEAGKNNKAL 991
K L E + N+ A + L
Sbjct: 215 KYKDELIEANEYIAYYYTINRDKVKADAAW------KNIL 248
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos
taurus}
Length = 291
Score = 32.4 bits (73), Expect = 1.0
Identities = 24/217 (11%), Positives = 57/217 (26%), Gaps = 43/217 (19%)
Query: 942 YDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWK 1001
Y +CI+ +++ P + + +E + Y+ K LD
Sbjct: 15 YQQCINEAQRVKPSS--------PERDVERDVFLYRA--YLAQRKYGVVLD--------- 55
Query: 1002 KAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDMYHQTGQWEK 1061
++ + Q V+ A++ + ++ +
Sbjct: 56 ------EIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL------DREMSRSVDVTNTTF 103
Query: 1062 AYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISMFKNQRQYENM 1121
A + A ++ Q + ++ L + DLA K
Sbjct: 104 LLMAASIYFYDQNPDAA-LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK------- 155
Query: 1122 IKLVRNYHPDLLDTTLLH-LAQECEESKNYKQAEKYY 1157
+++ D T L + + A +
Sbjct: 156 ---MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 32.6 bits (74), Expect = 1.0
Identities = 23/216 (10%), Positives = 58/216 (26%), Gaps = 40/216 (18%)
Query: 858 DKAGELYE------KEGDHQTALNYYLKANFTSKACNLVQNEPYL----------LENHD 901
A EL E + A Y +A ++ +
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACY------GRAITRNPLVAVYYTNRALCYLKMQQPE 55
Query: 902 -VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKN 956
++ + L + +KA GQ ++A+ ++ + +
Sbjct: 56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY----------SLAKEQ 105
Query: 957 VTALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDI 1016
++ L K+ + IE + ++ + + A + ++ +++
Sbjct: 106 RLNFGDDIPSALRIAKK---KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNH 162
Query: 1017 AQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVDM 1052
H + +K + D VD
Sbjct: 163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural
protein, kinetochore, mRNA transport, nucleus,
phosphoprotein, translocation; 3.53A {Homo sapiens}
Length = 644
Score = 32.9 bits (74), Expect = 1.1
Identities = 17/144 (11%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 992 DTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDMHEQIVD 1051
D++++ ++ V ++ +K++ + + Y E Y ++
Sbjct: 282 DSNLRNIVTEQLVALIDCF--LDGYVSQLKSVDKS-SNRERYDNLEMEYL--QKRSDLLS 336
Query: 1052 MYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYLIIGEPDLAISM 1111
GQ+ A ++AE++ +Q C+Q + +++ + + + + + +
Sbjct: 337 PLLSLGQYLWAASLAEKY----CDFDILVQMCEQTDNQSRLQRYMTQF---ADQNFSDFL 389
Query: 1112 FK---NQRQYENMIKLVRNYHPDL 1132
F+ + + ++ + H L
Sbjct: 390 FRWYLEKGKRGKLLSQPISQHGQL 413
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A
3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 32.7 bits (75), Expect = 1.1
Identities = 51/441 (11%), Positives = 128/441 (29%), Gaps = 104/441 (23%)
Query: 825 KWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTS 884
++E A S E++ +++L+ + ++ + + + + A +
Sbjct: 2 EFERAKSAIESDVDFWDKLQAEL----------EEMAKRDAEAHPWLSDYDDLTSATY-D 50
Query: 885 KACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDK 944
K + P + + G + A+ +
Sbjct: 51 KGYQFEEENPLR---------------DHPQPFEEGLRRLQEGDLPNAVLLFEA------ 89
Query: 945 CIDLTRKINPKNVTALEEEW---GDHLIENKQYNAAINHYIEAGK---------NNKALD 992
+ + +PK++ A W G EN+Q AI+ + A+
Sbjct: 90 AV----QQDPKHMEA----WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV- 140
Query: 993 TSIKAKQWKKAVQIL-QVITNKQDIAQHVKTLAQHFKTVKDYKTAEKIYSHCDM--HEQI 1049
+ ++A +IL + A V + + + S ++
Sbjct: 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 200
Query: 1050 VDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYL--IIGEPDL 1107
+++ + + + +G + ++ +A + + P+
Sbjct: 201 KELFLAAVRLDPTSIDPDVQCGLGVL----------FNLSGEYDKAVDCFTAALSVRPND 250
Query: 1108 AI------SMFKNQRQYENMIKLVRNYH------PDLLDTTLLHLAQECEESKNYKQAEK 1155
+ + N Q E + Y P + + +L C +++A +
Sbjct: 251 YLLWNKLGATLANGNQSEEAVA---AYRRALELQPGYIRS-RYNLGISCINLGAHREAVE 306
Query: 1156 YYLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSLGGDSAVRLLNRL 1215
++L+ A+ M R R GG + +W +L A+ +L +
Sbjct: 307 HFLE------ALNMQRK-------SRGPRGEGGAMSEN----IW-STLR--LALSMLGQS 346
Query: 1216 SLLESCISNACDTYQFDFAFE 1236
+ + T F
Sbjct: 347 DAYGAADARDLSTLLTMFGLP 367
Score = 31.2 bits (71), Expect = 3.1
Identities = 20/182 (10%), Positives = 43/182 (23%), Gaps = 48/182 (26%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYE 865
EN + AI + L L N L +
Sbjct: 107 TQAENEQELLAISALRR------CLELKPDNQTALMAL-----------------AVSFT 143
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEF 925
E + A ++ P + G S G +
Sbjct: 144 NESLQRQACEILRDW---------LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194
Query: 926 TNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEW---GDHLIENKQYNAAINHYI 982
+ + E + +++P ++ + G + +Y+ A++ +
Sbjct: 195 -SLFLEVKELFLA----------AVRLDPTSIDP--DVQCGLGVLFNLSGEYDKAVDCFT 241
Query: 983 EA 984
A
Sbjct: 242 AA 243
Score = 31.2 bits (71), Expect = 3.5
Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 96/302 (31%)
Query: 710 DFGKAILYLES-LGINKKEAEGMWQNLAEVAIQLHNLHVAEICYAALGDISTTHFLRETI 768
D A+L E+ + + K E WQ L + +A R +
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEA-WQYLGTTQAENEQELLAISAL------------RRCL 125
Query: 769 KIGEVWSKENNIGDPLQCPELWARMAILNKQFKVAEGIYLENNEIHKAIDMYLKLYKWED 828
++ P +A+ + + +A ++
Sbjct: 126 EL-----------KP-DNQTALMALAV----------SFTNESLQRQACEILRD------ 157
Query: 829 ALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACN 888
L ++ + G L +L A
Sbjct: 158 WLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAA-------- 207
Query: 889 LVQNEPYLLENHDVVSQIVKGLIKN---------ESYIKA--------------GQIYEF 925
V+ +P + D Q G++ N + + A G
Sbjct: 208 -VRLDP---TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263
Query: 926 TNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEW---GDHLIENKQYNAAINHYI 982
N++E+A+ YR + + ++ P + + G I + A+ H++
Sbjct: 264 GNQSEEAVAAYR------RAL----ELQPGYIRS----RYNLGISCINLGAHREAVEHFL 309
Query: 983 EA 984
EA
Sbjct: 310 EA 311
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 32.3 bits (74), Expect = 1.1
Identities = 27/125 (21%), Positives = 39/125 (31%), Gaps = 29/125 (23%)
Query: 51 GLAFSPDSTKLAVAQSDNIIFIYKLGDD--WGDKKVICNKFIQQCPVT----TM-----V 99
GLAF P L DN Y L + V P + +
Sbjct: 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV----HFTVEPGKTDGLRVDAGGLI 231
Query: 100 WLA--DGPIIY---GQSDGKIKAAHVKAN------KTQTLY--ASNSFVVALCLNVRGAG 146
W + DG + G G++ +N + +TLY S ++ NVRG
Sbjct: 232 WASAGDGVHVLTPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290
Query: 147 VLSGH 151
H
Sbjct: 291 HHHHH 295
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 31.1 bits (71), Expect = 1.2
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 40/140 (28%)
Query: 857 EDKAGELYE------KEGDHQTALNYYLKANFTSKACNLVQNEP---------YL-LENH 900
D A + ++GD+ A+ +Y ++A + Y L
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHY------TEAIKRNPKDAKLYSNRAACYTKLLEF 66
Query: 901 D-VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPK 955
+ + + ++IK E + KA++ Y+K ++
Sbjct: 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL----------DLDSS 116
Query: 956 NVTALEEEWGDHLIENKQYN 975
A + QYN
Sbjct: 117 CKEAADGYQ---RCMMAQYN 133
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 32.4 bits (75), Expect = 1.2
Identities = 50/267 (18%), Positives = 89/267 (33%), Gaps = 61/267 (22%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNIIFIYKLGDDW----GDKKVICNKFIQQC-----PVT 96
V + S A + D I +L W G K I+
Sbjct: 80 QLGVVSVDISHTLPIAASSSLDAHI---RL---WDLENG-------KQIKSIDAGPVDAW 126
Query: 97 TMVWLADGP-IIYGQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADG 154
T+ + D + G GK+ V++ K +L F++++ + G + SG DG
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 155 SI-VRYYVTEDASNFDQQQGRVVQ----HPVPPYALSW-PAGYILAAGS-DRIVTIYE-S 206
I + FD G+++ H +P +L++ P +L S D + IY+
Sbjct: 187 IINI----------FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 207 DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT 265
+ H VA P V S D +K+ W+
Sbjct: 237 HANLAGTLS---GH-ASWVLNVAF-CPDDTHFVSSSSDKSVKV---------WDVGTRTC 282
Query: 266 IPNLY----TISALSWKRDGSRIACGG 288
+ + + + + +GS+I G
Sbjct: 283 VHTFFDHQDQVWGVKYNGNGSKIVSVG 309
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 32.2 bits (74), Expect = 1.2
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 920 GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAIN 979
+++ E + A E YR K + + +N L +G L E K+Y A
Sbjct: 78 AVVFQTEMEPKLADEEYR------KAL----ASDSRNARVL-NNYGGFLYEQKRYEEAYQ 126
Query: 980 HYIEAGKNNKALDTSIK 996
+A ++
Sbjct: 127 RL------LEASQDTLY 137
Score = 31.5 bits (72), Expect = 1.9
Identities = 11/115 (9%), Positives = 34/115 (29%), Gaps = 15/115 (13%)
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA----NKPKEAIS------MY 1283
+ A + S+ V Y L + ++ EA + ++A P+ + +
Sbjct: 93 EYRKA-LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151
Query: 1284 IHNQDWENAE---RIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVD 1335
+ + A+ + + + L + ++ + +
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Score = 30.7 bits (70), Expect = 3.1
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
A + + + H A+V + + A+ ++ KA
Sbjct: 59 PLRKA-LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKA 97
Score = 29.9 bits (68), Expect = 6.2
Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 73/191 (38%)
Query: 806 IYLENNEIHKAIDMYLKLYKWEDALSL----AET-NNYEYNELKKKYIKWLTDTRQEDKA 860
++ E A + Y K AL+ A NNY
Sbjct: 80 VFQTEMEPKLADEEYRK------ALASDSRNARVLNNY---------------------- 111
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKN---ESYI 917
G ++ ++ A L+A + + +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEA--------------------------SQDTLYPERSRVFE 145
Query: 918 KAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAA 977
G + + +A E + K + ++N + E D L + ++Y A
Sbjct: 146 NLGLVSLQMKKPAQAKEYFE------KSL----RLNRNQPSVALEM-ADLLYKEREYVPA 194
Query: 978 INHYIEAGKNN 988
+Y +
Sbjct: 195 RQYYDLFAQGG 205
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 31.6 bits (72), Expect = 1.3
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 38/166 (22%)
Query: 856 QEDKAGELYE------KEGDHQTALNYYLKANFTSKACNLVQNEP---------YL-LEN 899
+A EL K D++ A+ +Y S+A L + YL E
Sbjct: 9 ALKRAEELKTQANDYFKAKDYENAIKFY------SQAIELNPSNAIYYGNRSLAYLRTEC 62
Query: 900 HD-VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINP 954
+ + + + ++ YIK + AL Y K+ P
Sbjct: 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV----------KVKP 112
Query: 955 KNVTALEE-EWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQ 999
+ A + + + +++ K + AI +LD +
Sbjct: 113 HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIE 158
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 32.7 bits (75), Expect = 1.3
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 188 PAGYILAAGSDR-----------IVTIYESDGRVHRIFDYTAPHYKEREFTVACS----S 232
P Y L A ++ IV + D + + + + C+ S
Sbjct: 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 233 PSGQAVVVGSYDN-IKLFAW 251
G + G D I++ W
Sbjct: 672 ADGSTLFSGYTDGVIRV--W 689
Score = 31.2 bits (71), Expect = 3.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIY------KLGDDWGDKKVICNKFIQQCP-------- 94
+ L FSP+ L A +++ I I+ + D D K K P
Sbjct: 605 IHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663
Query: 95 -VTTMVWLADGPIIY-GQSDGKIK 116
T++ W ADG ++ G +DG I+
Sbjct: 664 YCTSLNWSADGSTLFSGYTDGVIR 687
Score = 30.4 bits (69), Expect = 6.6
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 28 SEGNVAGIWAWRGQNGRKSYVVKGLAFSPDSTKLAVAQSDNII 70
+ RK L +S D + L +D +I
Sbjct: 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 32.3 bits (73), Expect = 1.3
Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 34/163 (20%)
Query: 825 KWEDALSLAETNNYEYNELKKKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTS 884
+E + + + + + G KE + A+ Y
Sbjct: 150 LYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQY------E 203
Query: 885 KACNLVQNEPYLLENHDVVSQIVKGL------------IKNESYIKA----GQIYEFTNE 928
A + + ++ + + + + IK + Y +A + +
Sbjct: 204 MAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262
Query: 929 NEKALECYRKGKV------YDKCI-DLTR--KINPKNVTALEE 962
N KAL +R+GK D D + K P + E
Sbjct: 263 NPKAL--FRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRE 303
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.9 bits (70), Expect = 1.4
Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 13/102 (12%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQ 973
++ G + E+AL+ Y ++ + ++
Sbjct: 53 RYFLGLGACRQSLGLYEQALQSYS------YGA----LMDINEPRFPFHA-AECHLQLGD 101
Query: 974 YNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQD 1015
+ A + + A A +A +L+ +T ++D
Sbjct: 102 LDGAESGFYSARALAAAQPAHEALAA--RAGAMLEAVTARKD 141
Score = 28.9 bits (65), Expect = 7.3
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 25/78 (32%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
G + G ++ AL Y S + NEP A
Sbjct: 59 GACRQSLGLYEQALQSY------SYGALMDINEP-------------------RFPFHAA 93
Query: 921 QIYEFTNENEKALECYRK 938
+ + + + A +
Sbjct: 94 ECHLQLGDLDGAESGFYS 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 30.3 bits (69), Expect = 1.7
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 35/125 (28%)
Query: 859 KAGELYE------KEGDHQTALNYYLKANFTSKACNLVQNEP---------YL-LENHD- 901
KA E + D A+ Y ++ + L +
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAY------TEMIKRAPEDARGYSNRAAALAKLMSFPE 56
Query: 902 VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNV 957
++ K + K+ ++++A E ALE + D N
Sbjct: 57 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA--------EVNNG 108
Query: 958 TALEE 962
++ E
Sbjct: 109 SSARE 113
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 30.7 bits (70), Expect = 1.9
Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 37/132 (28%)
Query: 853 DTRQEDKAGELYE------KEGDHQTALNYYLKANFTSKACNLVQNEP---------YL- 896
+ A EL E + A Y +A YL
Sbjct: 2 PHMKSPSAQELKEQGNRLFVGRKYPEAAACY------GRAITRNPLVAVYYTNRALCYLK 55
Query: 897 LENHD-VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRK 951
++ + ++ + L + +KA GQ ++A+ ++
Sbjct: 56 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY----------S 105
Query: 952 INPKNVTALEEE 963
+ + ++
Sbjct: 106 LAKEQRLNFGDD 117
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail virulence;
1.54A {Neisseria meningitidis}
Length = 225
Score = 31.1 bits (71), Expect = 2.6
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA 1273
+ E A + K E A + + ++A+ F +A
Sbjct: 30 SIEDA-LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68
Score = 30.7 bits (70), Expect = 3.5
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 19/129 (14%)
Query: 1234 AFELAKIGMKSKLEEVHYKYALVLEDN-GQFNEAETQFIKA----NKPKEAISMY----- 1283
+F A + +K E++ Y L + E+ F KA P I+
Sbjct: 64 SFRQA-LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122
Query: 1284 -IHNQDWENAE---RIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVDLIIE 1339
+ AE + + P ++ + + + +E
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQF-PPAFKELARTKMLAGQLGDADYYFKKYQS---RVE 178
Query: 1340 KYKMNHMWN 1348
+ + +
Sbjct: 179 VLQADDLLL 187
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB:
1wm5_A 1e96_B*
Length = 213
Score = 30.8 bits (70), Expect = 2.8
Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 20/161 (12%)
Query: 861 GELYEKEGDHQTALNYYLKANFT-SKACNLVQNEPYLLENHD-VVSQIVKGLIKNESYIK 918
G L + D + AL+ + S+ C + +L+N + + +++
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 919 A----GQIYEFTNENEKALECYRKGKVYDK---CIDLTRKINPKNVTALEEEW--GDHLI 969
A G +Y T + + A++ ++ + + ID + A E +
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132
Query: 970 ENKQYNAAINHYIEA---------GKNNKALDTSIKAKQWK 1001
+ +++ A A K +KA++ K K ++
Sbjct: 133 KKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 29.7 bits (67), Expect = 2.9
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 11/75 (14%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQ 973
E++ G ++ A+ R ++PK++
Sbjct: 52 EAWRSLGLTQAENEKDGLAIIALNHA----------RMLDPKDIAVH-AALAVSHTNEHN 100
Query: 974 YNAAINHYIEAGKNN 988
NAA+ +
Sbjct: 101 ANAALASLRAWLLSQ 115
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 30.8 bits (69), Expect = 2.9
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 1209 VRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAET 1268
VR L + I + + F IG + + +YA E G F +A+
Sbjct: 117 VRYLRIWMQYVNYIDEPVELFSF---LAHHHIG--QESSIFYEEYANYFESRGLFQKADE 171
Query: 1269 QFIKA 1273
+ K
Sbjct: 172 VYQKG 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 30.0 bits (68), Expect = 3.7
Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 39/126 (30%)
Query: 866 KEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGL------------IKN 913
+ D++ A++ Y A + + + + +
Sbjct: 23 VQKDYKEAIDAY------RDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI 76
Query: 914 ESYIKAGQIYEFTNE-------NEKALECYRKGKVY------DKCI-DLTR--KINPKNV 957
+A E ++E NEKAL +R+ K D+ DL + +P
Sbjct: 77 GDLHEA---EETSSEVLKREETNEKAL--FRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131
Query: 958 TALEEE 963
+ + E
Sbjct: 132 SVVARE 137
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 30.5 bits (70), Expect = 3.9
Identities = 51/263 (19%), Positives = 94/263 (35%), Gaps = 49/263 (18%)
Query: 49 VKGLAFSPDSTKLAVAQSDNIIFIYKLGDDWGDKKVICNKFIQQC---------PVTTMV 99
+ +A+S DS L A D + K+ W + +C V
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTL---KI---W-------DVSSGKCLKTLKGHSNYVFCCN 114
Query: 100 WLADGPIIY-GQSDGKIKAAHVKANKT-QTLYASNSFVVALCLNVRGAGVLSGHADGSIV 157
+ +I G D ++ VK K +TL A + V A+ N G+ ++S DG
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC- 173
Query: 158 RYYVTEDASNFDQQQGRVVQHPVPPYALSW-PAGYILAAGS-DRIVTIYE-SDGRVHRIF 214
R + D ++ + + P + + P G + A + D + +++ S G+ + +
Sbjct: 174 RIW---DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 215 DYTAPHYKE-REFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY-- 270
H E S G+ +V GS DN + + W Q + + L
Sbjct: 231 TG---HKNEKYCIFANFSVTGGKWIVSGSEDNLVYI---------WNLQTKEIVQKLQGH 278
Query: 271 --TISALSWKRDGSRIACGGLCG 291
+ + + + IA L
Sbjct: 279 TDVVISTACHPTENIIASAALEN 301
Score = 30.1 bits (69), Expect = 5.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 46 SYVVKGLAFSPDSTKLAVAQSDNII 70
+ V + FSP+ + A DN +
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTL 216
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 31.0 bits (71), Expect = 3.9
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 45 KSYVVKGLAFSPDSTKLAVAQSDN-----IIFIYKL--GDDWGDKKVICNKFIQQCPVTT 97
+ ++G AFS D A S + I K+ + D +++ +
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------LERVKFSC 175
Query: 98 MVWLADGPIIY----GQSDGKIKAAHVKANKTQTLY 129
M W DG ++ Q DGK N Q LY
Sbjct: 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel,
pilus assembly, outer-membrane, cell adhesion-T
protein-chaperone complex; 2.80A {Escherichia coli} PDB:
3ohn_A 1zdv_A
Length = 843
Score = 31.1 bits (70), Expect = 4.0
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 171 QQGRVV-QHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHR 212
Q G + VPP + Y D VTI E+DG
Sbjct: 270 QNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQI 312
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha
solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A
3mzl_B
Length = 399
Score = 31.0 bits (69), Expect = 4.0
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 9/162 (5%)
Query: 1157 YLDCNEWKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPV--VYLWAKSLGGDSAVRLLNR 1214
L K A+K +L +A IAL + + E V Y AK S R+L
Sbjct: 153 NLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYF-AKYGSKSSLSRILYS 211
Query: 1215 LSL--LESCISNACDTYQFDFAFELAKIGMKSKLEE---VHYKYALVLEDNGQFNEAETQ 1269
+S ++ + N D Q+ F + + + + + + K +++NG ++ T
Sbjct: 212 ISKREVDDLVEN-LDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTL 270
Query: 1270 FIKANKPKEAISMYIHNQDWENAERIANEHDPTSIGDILLNQ 1311
++ A + S+++ + + + +
Sbjct: 271 YLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTE 312
Score = 30.6 bits (68), Expect = 4.9
Identities = 23/170 (13%), Positives = 61/170 (35%), Gaps = 8/170 (4%)
Query: 978 INHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTLAQHFKTVKDYKTAE 1037
I+ + +G A+ S++ +A+ ++ + +N + + + VK +F +
Sbjct: 150 ISKNLVSGNIKSAVKNSLENDLMMEAM-VIALDSNNERLKESVKN--AYFAKYGSKSSLS 206
Query: 1038 KIYSHCDMHEQIVDMYHQT--GQWEKAYAI--AEQHLNVGEIKATFIQKCKQLEEENKFK 1093
+I ++ D+ QW+ ++ + I+ +++E +
Sbjct: 207 RILY-SISKREVDDLVENLDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQ 265
Query: 1094 EAERLYLIIGEPDLAISMFKNQRQYENMIKLVRNYHPDLLDTTLLHLAQE 1143
++ LYL G D S++ ++ N + + E
Sbjct: 266 DSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIE 315
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 31.0 bits (70), Expect = 4.1
Identities = 12/141 (8%), Positives = 29/141 (20%), Gaps = 21/141 (14%)
Query: 861 GELYEKEGDHQTALNYYLKA-----NFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNES 915
+ GD + L + + + + +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 916 YIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEE--EWGDHLI 969
+ G E + E A Y + ++ P+ + W L
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRA----------HQLLPEEPYITAQLLNWRRRLC 139
Query: 970 ENKQYNAAINHYIEAGKNNKA 990
+ + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVG 160
Score = 29.8 bits (67), Expect = 8.0
Identities = 19/188 (10%), Positives = 41/188 (21%), Gaps = 43/188 (22%)
Query: 1056 TGQWEKAYAIAEQ-----------HLNVGEIKATFIQKCKQLEEENKFKEAERLY--LII 1102
T + L + + E +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADA----------ELGMGDTTAGEMAVQRGLA 51
Query: 1103 GEPDLA------ISMFKNQRQYENMIKLVR---NYHPDLLDTTLLHLAQECEESKNYKQA 1153
P + Q+++ L++ + P+ L L E++ + A
Sbjct: 52 LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI-ALWLGHALEDAGQAEAA 110
Query: 1154 EKYYLDCNE----------WKLAIKMYRSLNLWEDAYRIALSNGGQEAVEPVVYLWAKSL 1203
Y ++ L + D + + V V S
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
Query: 1204 GGDSAVRL 1211
+A +L
Sbjct: 171 DASAAEQL 178
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide
transport/peptide), peptide transport; 1.20A {Salmonella
typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A
1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A
1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A
1b7h_A ...
Length = 517
Score = 30.7 bits (70), Expect = 4.2
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 885 KACNLVQNEPYLLENHDVVSQIVKGLIKNESY-----IKAGQI-YEFTNENEKALECYRK 938
+ N+V N Y L+N V +IV L +N Y Q+ Y + + YR
Sbjct: 181 QPANIVTNGAYKLKNWVVNERIV--LERNPQYWDNAKTVINQVTYLPISSEVTDVNRYRS 238
Query: 939 GKVYDKCIDLTRKINPKN-VTALEEEWGDHLIENKQY 974
G+ ID+T P L++E + + +
Sbjct: 239 GE-----IDMTYNNMPIELFQKLKKEIPNEVRVDPYL 270
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat,
type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 29.5 bits (66), Expect = 4.5
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 1240 IGMKSKLEEVHYKYALVLEDNGQFNEAETQFIKA--NKPKEA------ISMYIHNQDWEN 1291
+ S E Y A +G + +A F ++ + ++
Sbjct: 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 73
Query: 1292 AE---RIANEHDPTSIGDILLNQSKCEFENENFSKFETLLLRAHKVD 1335
A D + ++C + ++ E+ L A ++
Sbjct: 74 AIHSYSYGAVMDIXE-PRFPFHAAECLLQXGELAEAESGLFLAQELI 119
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 30.1 bits (68), Expect = 4.6
Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 41/152 (26%)
Query: 842 ELKKKYIKWLTDTRQEDKAGELYE------KEGDHQTALNYYLKA------------NFT 883
+ KK I TD + A ++ E K+ + A+ Y +A
Sbjct: 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79
Query: 884 SKACNLVQNEPYL--------LENHD-VVSQIVKGLIKNESYIKA----GQIYEFTNENE 930
++ L +++ + K L +++ +KA G + E
Sbjct: 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE 139
Query: 931 KALECYRKGKVYDKCIDLTRKINPKNVTALEE 962
+A E K +NP N+
Sbjct: 140 EAKENLYKAA----------SLNPNNLDIRNS 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 30.1 bits (67), Expect = 5.7
Identities = 30/270 (11%), Positives = 77/270 (28%), Gaps = 35/270 (12%)
Query: 798 KQFKVAEGIY-------LENNEIHKAIDMYLKLYK-----WEDALSLAETNNYEYNELKK 845
Q +++E I +E+ ++ ++D+ + + ++ E + K
Sbjct: 20 TQKQLSENICHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFK 79
Query: 846 KYIKWLTDTRQEDKAGELYEKEG--------DHQTALNYYLKANFTSKACNLVQNEPYLL 897
+ L ++ + E Q Y A + K + L
Sbjct: 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELK 139
Query: 898 ENHDVVSQIVKGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNV 957
+ + + IY +K ++ + + + + + + K
Sbjct: 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199
Query: 958 TALEEEWGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIA 1017
L + +Y ++ NKA++ S + Q+
Sbjct: 200 YNH----AKALYLDSRYEESLYQV------NKAIEISCRINSMALIGQLYYQRGECLRKL 249
Query: 1018 QHVKTLAQHFKTVKDYKTAEKIYSHCDMHE 1047
++ + + YK A + +MH
Sbjct: 250 EYEEAEIEDA-----YKKASFFFDILEMHA 274
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 28.6 bits (65), Expect = 6.0
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 23/81 (28%)
Query: 914 ESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEW---GDHLIE 970
E Y G + ++++ ++K I +++P+ W G L
Sbjct: 7 EEYYLEGVLQYDAGNYTESIDL------FEKAI----QLDPEESKY----WLMKGKALYN 52
Query: 971 NKQYNAAINHYIEAGKNNKAL 991
++Y A++ Y N +
Sbjct: 53 LERYEEAVDCY------NYVI 67
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 30.2 bits (67), Expect = 6.5
Identities = 35/292 (11%), Positives = 90/292 (30%), Gaps = 22/292 (7%)
Query: 845 KKYIKWLTDTRQEDKAGELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVS 904
++ + L ++ L+ + L + V+ + + +
Sbjct: 18 MEHARRLYMSKDYRSLESLFGR------CLKKSYNLDLWMLYIEYVRK---VSQKKFKLY 68
Query: 905 QIV-KGLIKNESYIKAGQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEE 963
++ L + E+Y + +Y+ E E +E + +K + + + +L E
Sbjct: 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIE--DEQTRIEKIRNGYMRALQTPMGSLSEL 126
Query: 964 WGDHLIENKQYNAAINHYIEAGKNNKALDTSIKAKQWKKAVQILQVITNKQDIAQHVKTL 1023
W D + N I + + +Q + ++ V N +
Sbjct: 127 WKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV-KNAARLIDLEMEN 185
Query: 1024 AQHFKTVKDYKTAEKIYSHC--------DMHEQIVDMYHQTGQWEKAYAIAEQHLNVGEI 1075
I+++ +++ + GQ EKA + E+ + + +
Sbjct: 186 GMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDG 245
Query: 1076 KATFIQKCKQLEEENKFKEAERLYL-IIGEPDLAISMFKNQRQYENMIKLVR 1126
+ ++EE + + +R Y E + + N + V
Sbjct: 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 6.6
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 1028 KTVKDYKTAEKIYSHCD--MHEQIVDMYHQTGQ-W 1059
K V+ + + + + C + +++VD T W
Sbjct: 33 KIVERFSEGDVVCALCGLVLSDKLVD----TRSEW 63
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 28.7 bits (65), Expect = 6.7
Identities = 23/126 (18%), Positives = 34/126 (26%), Gaps = 37/126 (29%)
Query: 858 DKAGELYE------KEGDHQTALNYYLKANFTSKACNLVQNEP---------YL-LENHD 901
++ EL E G+ AL Y S+A L + Y ++
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCY------SEAIKLDPHNHVLYSNRSAAYAKKGDYQ 55
Query: 902 -VVSQIVKGLIKNESYIKA----GQIYEFTNENEKALECYRKGKVYDKCIDLTRKINPKN 956
K + + K EF N E+A Y +G K N
Sbjct: 56 KAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG----------LKHEANN 105
Query: 957 VTALEE 962
E
Sbjct: 106 PQLKEG 111
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 29.9 bits (68), Expect = 6.9
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 637 GSDVVVAQSRHNACVWYNIDTPDRITQFPVRGDIIDVIRENGQSEILTQDGNHQLGYELD 696
S V + H A I + + DI ++ + + + G LG E++
Sbjct: 298 ESSVASSAGFHVAFSKKIITSVELTGPLKFTKDIGNLHYDVPFIRLNEKPG---LGIEIN 354
Query: 697 ESLIE 701
E ++
Sbjct: 355 EDTLQ 359
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 30.1 bits (67), Expect = 6.9
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 26/78 (33%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
+G + + E L +Y+ G
Sbjct: 284 AVSALVKGKTDESYQAINTG---------IDLEMSWL-----------------NYVLLG 317
Query: 921 QIYEFTNENEKALECYRK 938
++YE N +A + Y
Sbjct: 318 KVYEMKGMNREAADAYLT 335
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 29.0 bits (65), Expect = 7.6
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 25/78 (32%)
Query: 861 GELYEKEGDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAG 920
+Y+ + Q A + Y + A L +N+ G
Sbjct: 77 AAIYQIKEQFQQAADLY------AVAFALGKNDY-------------------TPVFHTG 111
Query: 921 QIYEFTNENEKALECYRK 938
Q KA EC+
Sbjct: 112 QCQLRLKAPLKAKECFEL 129
Score = 29.0 bits (65), Expect = 8.1
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 26/126 (20%)
Query: 1047 EQIVDMYHQTGQWEKAYAIAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLY--LIIGE 1104
++D + + AI + ++ + + +EAE + L I +
Sbjct: 13 TAVIDAINSGATLKDINAIPDDMMDD------IYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 1105 PD-------LAISMFKNQR------QYENMIKLVRNYHPDLLDTTLLHLAQECEESKNYK 1151
LA ++ Y L +N + T + H Q K
Sbjct: 67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY-----TPVFHTGQCQLRLKAPL 121
Query: 1152 QAEKYY 1157
+A++ +
Sbjct: 122 KAKECF 127
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 28.1 bits (63), Expect = 8.3
Identities = 18/117 (15%), Positives = 27/117 (23%), Gaps = 33/117 (28%)
Query: 868 GDHQTALNYYLKANFTSKACNLVQNEPYLLENHDVVSQIVKGLIKNESYIKAGQIYEFTN 927
G A+ YY KA L E Y+ G +
Sbjct: 4 GLEAQAVPYYEKA------IASGLQGKDLAE----------------CYLGLGSTFRTLG 41
Query: 928 ENEKALECYRKGKVYDKCIDLTRKINPKNVTALEEEWGDHLIENKQYNAAINHYIEA 984
E KA G K P + + L +Y + ++
Sbjct: 42 EYRKAEAVLANGV----------KQFPNHQALR-VFYAMVLYNLGRYEQGVELLLKI 87
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor
suppressor, TPR, apoptosis, cell division, cell cycle,
kinetochore, transferase; 1.80A {Homo sapiens} PDB:
3si5_A
Length = 164
Score = 29.1 bits (65), Expect = 8.6
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 1209 VRLLNRLSLLESCISNACDTYQFDFAFELAKIGMKSKLEEVHYKYALVLEDNGQFNEAET 1268
R LN L + D Y + IG L + + +A E F +A+
Sbjct: 63 PRFLNLWLKLGRLCNEPLDMYSY---LHNQGIG--VSLAQFYISWAEEYEARENFRKADA 117
Query: 1269 QFIKA 1273
F +
Sbjct: 118 IFQEG 122
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 30.1 bits (68), Expect = 8.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 50 KGLAFSPDSTKLAVAQSD 67
G ++PD + +A A+ D
Sbjct: 212 TGYWWAPDDSAIAYARID 229
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 29.8 bits (66), Expect = 9.4
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 10/128 (7%)
Query: 1065 IAEQHLNVGEIKATFIQKCKQLEEENKFKEAERLYL----IIGEPDLAISMFKNQRQYEN 1120
I E + E T IQK + R Y+ I + Q +
Sbjct: 19 IVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDT 78
Query: 1121 M--IKLVRNYHPDLLDTTLLHLAQE----CEESKNYKQAEKYYLDCNEWKLAIKMYRSLN 1174
+ +H +D +L E ++K + D + + + ++++
Sbjct: 79 KTNNRTSHAWHKLFVDQKTQYLVGEPVTFTSDNKTLLEYVNELADDDFDDILNETVKNMS 138
Query: 1175 LWEDAYRI 1182
Y
Sbjct: 139 NKGIEYWH 146
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 29.5 bits (67), Expect = 9.7
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 35 IWAWR-GQNGRK----SYVVKGLAFSPDSTKLAVAQSDNII 70
+W + G R + V+ ++F LA +D I
Sbjct: 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 29.7 bits (67), Expect = 10.0
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 12/60 (20%)
Query: 20 NLDIVRLRSEGNVAGIWAWRGQNGRKSYV------------VKGLAFSPDSTKLAVAQSD 67
NL I R G +G ++ V KG +SP + LA + D
Sbjct: 142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMD 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 25,079,081
Number of extensions: 1539739
Number of successful extensions: 5005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4308
Number of HSP's successfully gapped: 505
Length of query: 1637
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1530
Effective length of database: 3,714,246
Effective search space: 5682796380
Effective search space used: 5682796380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.3 bits)