BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12803
(902 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 29/167 (17%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYM 362
+G V+L C A G+P P+I+W+ ++ KPI + + ++ L + + G+Y
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK--SNGILEIPNFQQEDAGSYE 274
Query: 363 CLADNV---------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID 407
C+A+N P + I N + V + + EC+ P W
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQPNWVQIIN-DIHVAMEESVFWECKANGRPKPTYRWLKNG 333
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
L+ D ++ +++G+ LNI+ VN+SD Y+C+++N+
Sbjct: 334 DPLLTRDRIQ-----IEQGT------LNITIVNLSDAGMYQCVAENK 369
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 291 GSEHIFSSSPIVV-----REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
GS +F P V E V+L C G+PKP I WK + ++ S V
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 346 STLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLE-CEVEAFPLSVRYWE 404
S L + G Y C+A N G + R A L+ +E F R
Sbjct: 63 SLLINNPNKTQDAGTYQCIATN----------SFGTIVSREAKLQFAYLENFKTRTRSTV 112
Query: 405 FI---DGTLI-----EHDG-VKYSISDVDKGSYQ----YIMQ----LNISNVNISDFDTY 447
+ G ++ H G + Y+ + SYQ ++ Q L I+ V SD Y
Sbjct: 113 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 448 RCISKNEV 455
C+ N V
Sbjct: 173 TCVVTNTV 180
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 29/165 (17%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
+G V+L C A G+P P+I+W+ ++ KPI + + ++ L + + G+Y C+
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK--SNGILEIPNFQQEDAGSYECV 275
Query: 365 ADNV---------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT 409
A+N P + I N + V + + EC+ P W
Sbjct: 276 AENSRGKNVAKGQLTFYAQPNWVQIIN-DIHVAMEESVFWECKANGRPKPTYRWLKNGDP 334
Query: 410 LIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
L+ D ++ +++G+ LNI+ VN+SD Y+C+++N+
Sbjct: 335 LLTRDRIQ-----IEQGT------LNITIVNLSDAGMYQCVAENK 368
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 291 GSEHIFSSSPIVV-----REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS 345
GS +F P V E V+L C G+PKP I WK + ++ S V
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 61
Query: 346 STLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLE-CEVEAFPLSVRYWE 404
S L + G Y C+A N G + R A L+ +E F R
Sbjct: 62 SLLINNPNKTQDAGTYQCIATN----------SFGTIVSREAKLQFAYLENFKTRTRSTV 111
Query: 405 FI---DGTLI-----EHDG-VKYSISDVDKGSYQ----YIMQ----LNISNVNISDFDTY 447
+ G ++ H G + Y+ + SYQ ++ Q L I+ V SD Y
Sbjct: 112 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 448 RCISKNEV 455
C+ N V
Sbjct: 172 TCVVTNTV 179
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 29/187 (15%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
+P +EG++ + C P+IIWK I + ++++ L I + +
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 167
Query: 359 GAYMC----------------LADNVPPQILIRNRRVGVP--IGRTATLECEVEAFPLSV 400
G Y C + NVPP + R V +G++ TL C+ + FP
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 401 RYWEFIDGTLIEH---DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
W DG IE+ D K+ SD +L I NV+ +D Y CI++N+
Sbjct: 228 MSWTK-DGEPIENEEEDDEKHIFSDDSS-------ELTIRNVDKNDEAEYVCIAENKAGE 279
Query: 458 AKGSLIL 464
S+ L
Sbjct: 280 QDASIHL 286
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 24/180 (13%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGA 360
+V++ ++ R C G P+ ++W E + ++ S V S + L ++ + G
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 361 YMCLADNV--------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406
Y C A N PP + V G LECE++ P W
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 421
Query: 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV--DIAKGSLIL 464
L G KY I S ++ ++I NV+ +D Y+C + N+V D GS+ L
Sbjct: 422 KREL--RSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 31/188 (16%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK---DSAVASSTLNFTRINRINMGAYM 362
G+ + L+C G P+ I W K + ++K + VAS +N +++ ++G Y
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN--KVDHSDVGEYT 77
Query: 363 CLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVE-AFPLSVRYWE 404
C A+N +PP + + V +G EC + + PL V +++
Sbjct: 78 CKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK 137
Query: 405 FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
DG L++ D +++ + L I + S Y C + N + A S L
Sbjct: 138 --DGELLKDD------ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 465 FESNAKTP 472
S + P
Sbjct: 190 TLSEHEVP 197
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS----STLNFTRINR 355
P+ +G +V L C G P + W + + L S K + S ++++ ++
Sbjct: 393 PVETLKGADVHLECELQGTPPFQVSWHKDKRE---LRSGKKYKIMSENFLTSIHILNVDS 449
Query: 356 INMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVE-AFPLSV 400
++G Y C A N PP+ + + + +G L+ +E A P+SV
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISV 509
Query: 401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
+++ + E D + S S+ I L S ++ Y C KNE
Sbjct: 510 AWFKDKGEIVRESDNIWISYSE-------NIATLQFSRAEPANAGKYTCQIKNEA 557
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 31/185 (16%)
Query: 292 SEH----IFSSSPIVV--REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA- 344
SEH F P+ V G++ +C TG I W + G++K + V
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 345 SSTLNFTRINRINMGAYMCLADNV--------------PPQIL--IRNRRVGVPIGRTAT 388
++TL ++ + + G Y C A NV PP+ + + R+ V
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI-VKQDEHTR 310
Query: 389 LECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448
EC++ P W + D T I+ + K+ +S V+ + L + N+++ D Y
Sbjct: 311 YECKIGGSPEIKVLW-YKDETEIQ-ESSKFRMSFVES-----VAVLEMYNLSVEDSGDYT 363
Query: 449 CISKN 453
C + N
Sbjct: 364 CEAHN 368
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
PP + V IG TL+C+V+ P W L K +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKN------ 58
Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP 472
+ L I+ V+ SD Y C ++N V S +L K P
Sbjct: 59 -NVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLP 101
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGA 360
+V++ ++ R C G P+ ++W E + ++ S V S + L ++ + G
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 361 YMCLADNV--------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406
Y C A N PP + V G LECE++ P W
Sbjct: 170 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
L G KY I S ++ ++I NV+ +D Y+C + N+V
Sbjct: 230 KREL--RSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDV 271
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 25/165 (15%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCL 364
G++ +C TG I W + G++K + V ++TL ++ + + G Y C
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 365 ADNV--------------PPQIL--IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG 408
A NV PP+ + + R+ V EC++ P W + D
Sbjct: 80 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI-VKQDEHTRYECKIGGSPEIKVLW-YKDE 137
Query: 409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
T I+ + K+ +S V+ + L + N+++ D Y C + N
Sbjct: 138 TEIQ-ESSKFRMSFVES-----VAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGA 360
+V++ ++ R C G P+ ++W E + ++ S V S + L ++ + G
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 361 YMCLADNV--------------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406
Y C A N PP + V G LECE++ P W
Sbjct: 170 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
L G KY I S ++ ++I NV+ +D Y+C + N+V
Sbjct: 230 KREL--RSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDV 271
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 25/165 (15%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMGAYMCL 364
G++ +C TG I W + G++K + V ++TL ++ + + G Y C
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 365 ADNV--------------PPQIL--IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG 408
A NV PP+ + + R+ V EC++ P W + D
Sbjct: 80 ASNVAGKDSCSAQLGVQAPPRFIKKLEPSRI-VKQDEHTRYECKIGGSPEIKVLW-YKDE 137
Query: 409 TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
T I+ + K+ +S V+ + L + N+++ D Y C + N
Sbjct: 138 TEIQ-ESSKFRMSFVES-----VAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 57/191 (29%)
Query: 306 GDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKD-SAVASSTLNFTRINRINMG 359
G +V L+CVA G+P P I W K + N +G + + S LN T ++ + G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 360 AYMCLAD------------NVPPQILIRN-RRVGVPIGRTATLECEVEAFPLSVRYWE-- 404
Y C+A NV IR + + G T + C V +P+ WE
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 405 ------------FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452
F +GTLI I +V++ SD TY C++K
Sbjct: 564 NRALPINRKQKVFPNGTLI--------IENVERN---------------SDQATYTCVAK 600
Query: 453 NEVDI-AKGSL 462
N+ A+GSL
Sbjct: 601 NQEGYSARGSL 611
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA------VASSTLNFTRINRINM 358
+G + ++ C A G PKP + WK + T G +KD V TL+ I + N
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGD--TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNE 785
Query: 359 GAYMCLADN 367
G Y+C A N
Sbjct: 786 GYYLCEAIN 794
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 320 KPSIIWKTSENKPITLGSWKDSAVA----SSTLNFTRINRINMGAYMCLADNV------- 368
+P++ PI SW A S L + + + G Y C N
Sbjct: 359 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEAS 418
Query: 369 ----------PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKY 418
PP I + + G + L+C P WE +DG I ++ +Y
Sbjct: 419 AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE-LDGKKIANND-RY 476
Query: 419 SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
+ + + LNI++V+ +D Y+CI+K++V +A+ S L
Sbjct: 477 QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 30/185 (16%)
Query: 289 IVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTL 348
+ G +I + G+ + + C G+P SI+W+ +N+ + + K + TL
Sbjct: 524 VYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWE-RDNRALPINR-KQKVFPNGTL 581
Query: 349 NFTRINR-INMGAYMCLADN---------VPPQILIRNRRVGVP-------IGRTATLEC 391
+ R + Y C+A N + Q+++ R + +G+ TL C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641
Query: 392 EVEA--FPLSVRYWEFIDGTLIEHDGVKYSISDVD-KGSYQYIMQLNISNVNISDFDTYR 448
V PL++ + +DG I D + + S V +GS L I V S +
Sbjct: 642 SVPGGDLPLNIDW--TLDGQAISED-LGITTSRVGRRGSV-----LTIEAVEASHAGNFT 693
Query: 449 CISKN 453
C ++N
Sbjct: 694 CHARN 698
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 25/181 (13%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
S ++ EG + L C +G+P PS W E + I L S K S + S L + + +
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLRGE-EVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 359 GAYMC--------------LADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE 404
G Y C L VPP L + EC V P+ W
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Query: 405 FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
+I D + + GS L I V SD Y+C+++NE A+ S L
Sbjct: 348 KNGDVVIPSDYFQ-----IVGGS-----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Query: 465 F 465
Sbjct: 398 I 398
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 69/185 (37%), Gaps = 35/185 (18%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSEN--KPITLGSWKDSAVASSTLNFTRINRINMGAYMC 363
GD V L+C G P P+I W+ ++ PI G + + S L +R+ + G Y C
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP-GDSRVVVLPSGALQISRLQPGDSGVYRC 194
Query: 364 LADNVPPQ---------------------ILIRNRRVGVPIGRTATLECEVEAFPLSVRY 402
A N L R V G+ A LEC V +P
Sbjct: 195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 403 WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS--KNEVDIAKG 460
W +I+ KYS+ GS L ISNV D TY C+ KNE A
Sbjct: 255 W-LRGEEVIQLRSKKYSLLG---GS-----NLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 461 SLILF 465
L +
Sbjct: 306 ELTVL 310
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G ++R CVA+G P+P++ W + +P L S V+ L F+++ + G Y C+A
Sbjct: 309 GSDLRWSCVASGKPRPAVRW-LRDGQP--LASQNRIEVSGGELRFSKLVLEDSGMYQCVA 365
Query: 366 DN 367
+N
Sbjct: 366 EN 367
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G V L C A G+P P I W+ + + W S L+ ++ + G Y C A
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSS---EPLLHIQNVDFEDEGTYECEA 276
Query: 366 DNV 368
+N+
Sbjct: 277 ENI 279
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 356 INMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG 415
++ ++ C A P I+ R + + GR A L+C P+S W +GT++ H
Sbjct: 343 VDQASFQCSA----PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHAS 396
Query: 416 VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT 471
IS ++ G+ LN S+V +SD Y C+ N + S L S A T
Sbjct: 397 RHPRISVLNDGT------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G N+R C A G P+P++ W +P L S V + L F++++ + G Y C+A
Sbjct: 308 GSNLRWGCAAAGKPRPTVRW-LRNGEP--LASQNRVEVLAGDLRFSKLSLEDSGMYQCVA 364
Query: 366 DN 367
+N
Sbjct: 365 EN 366
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 30/163 (18%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G V L C A G+P P I W+ + W A TL ++ + G Y C A
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGS--LSPQW---TTAEPTLQIPSVSFEDEGTYECEA 275
Query: 366 DNVPPQILIRNRRV--------------GVPIGRTATLECEVEAFPLSVRYWEFIDGTLI 411
+N + ++ R + IG C P W L
Sbjct: 276 ENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLA 335
Query: 412 EHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
+ V+ D L S +++ D Y+C+++N+
Sbjct: 336 SQNRVEVLAGD-----------LRFSKLSLEDSGMYQCVAENK 367
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SSTLNFTRI----N 354
+VV++ + L C G P+P+I W + +P++ K V L F R
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEW-FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 355 RINMGAYMCLADNVPPQILIRNRRVGVPI----------------GRTATLEC-EVEAFP 397
+ G Y C+A N Q + R+ + + + G TA LEC + P
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP 137
Query: 398 LSVRYWEFIDGTLIE-----HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452
W DG ++ G + VD G+ L ISNV D Y+CI++
Sbjct: 138 EPTLIW-IKDGVPLDDLKAMSFGASSRVRIVDGGN------LLISNVEPIDEGNYKCIAQ 190
Query: 453 NEVDIAKGS 461
N V + S
Sbjct: 191 NLVGTRESS 199
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SSTLNFTRI----N 354
+VV++ + L C G P+P+I W + +P++ K V L F R
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEW-FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 355 RINMGAYMCLADNVPPQILIRNRRVGVPI----------------GRTATLEC-EVEAFP 397
+ G Y C+A N Q + R+ + + + G TA LEC + P
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP 137
Query: 398 LSVRYWEFIDGTLIE-----HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452
W DG ++ G + VD G+ L ISNV D Y+CI++
Sbjct: 138 EPTLIW-IKDGVPLDDLKAMSFGASSRVRIVDGGN------LLISNVEPIDEGNYKCIAQ 190
Query: 453 NEVDIAKGS 461
N V + S
Sbjct: 191 NLVGTRESS 199
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 290 VGSEHIFSSSPIV-VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--- 345
+GS + SS P V + E + V+L C +G P + WK + L + + AS
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 346 ------STLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPI 383
+ + F + R + G Y C+ VPP N I
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 384 GRTATLEC-EVEAFPLSVRYWEFIDGTLI 411
G A L C E + P S W F DG ++
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTW-FKDGIVM 149
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGA 360
IVV++G +V + C TG P P+++W + KP++ G + V S L + + G
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVW-SHNAKPLSGGR---ATVTDSGLVIKGVKNGDKGY 374
Query: 361 YMCLADN 367
Y C A N
Sbjct: 375 YGCRATN 381
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
SP ++G++ + C + P P++ W + T+ + + +A++ L IN+ +
Sbjct: 106 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 165
Query: 359 GAYMC----------------LADNVPPQILIRNRRVGVPI--GRTATLECEVEAFPLSV 400
G Y C + NVPP I + + G T C P
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225
Query: 401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
W F +G LIE + KY + KGS +L + N+ SD Y C + N+
Sbjct: 226 ISW-FRNGKLIEENE-KYIL----KGSN---TELTVRNIINSDGGPYVCRATNK 270
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---------SST 347
+ S + V E ++++L C +G P + WK + L + A SS
Sbjct: 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66
Query: 348 LNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLEC 391
+ F+ + R + G Y C+ VPP + V IG A L C
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTC 126
Query: 392 -EVEAFPLSVRYWEFIDG-TLIEHDGVK 417
E + P S W F DG +++ D K
Sbjct: 127 SEHDGSPPSEYSW-FKDGISMLTADAKK 153
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINM 358
SP ++G++ + C + P P++ W + T+ + + +A++ L IN+ +
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 359 GAYMC----------------LADNVPPQILIRNRRVGVPI--GRTATLECEVEAFPLSV 400
G Y C + NVPP I + + G T C P
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454
W F +G LIE + KY + KGS +L + N+ SD Y C + N+
Sbjct: 130 ISW-FRNGKLIEENE-KYIL----KGSN---TELTVRNIINSDGGPYVCRATNK 174
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 48/200 (24%)
Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW-------KTSENKPITLGS 337
PP IV EH S ++V +G+ L C A G P P+I W +T ++ P +
Sbjct: 8 FPPRIV--EH---PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS--- 59
Query: 338 WKDSAVASSTLNFTRI-----NRINMGAYMCLADN-----------VPPQILIRNRR--- 378
+ S +L F RI +R + G Y+C+A N + IL + R
Sbjct: 60 -HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 379 --VGVPIGRTATLECE-VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLN 435
V V +G A +EC+ P W+ DG+ ++ + +I +G +L
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERITI----RGG-----KLM 168
Query: 436 ISNVNISDFDTYRCISKNEV 455
I+ SD Y C+ N V
Sbjct: 169 ITYTRKSDAGKYVCVGTNMV 188
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 36/179 (20%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG--- 359
VR G C A G P PSI+W+ + K S ++ RI + G
Sbjct: 20 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 79
Query: 360 -AYMCLADN-------------------VPPQILIRNRRVG---VPIGRTATLECEVEAF 396
Y C+A+N P + + G + +G T + C+
Sbjct: 80 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 139
Query: 397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
P YW + T ++ +YS+ D L I N D Y C+++N +
Sbjct: 140 PTPNIYW-IKNQTKVDMSNPRYSLKD---------GFLQIENSREEDQGKYECVAENSM 188
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAY 361
V+ G V + C A G+P P+I W ++ K + + + + S + L + G Y
Sbjct: 123 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTK-VDMSNPRYS-LKDGFLQIENSREEDQGKY 180
Query: 362 MCLADN 367
C+A+N
Sbjct: 181 ECVAEN 186
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 36/179 (20%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGA-- 360
VR G C A G P PSI+W+ + K S ++ RI + G
Sbjct: 18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 361 --YMCLADN-------------------VPPQILIRNRRVG---VPIGRTATLECEVEAF 396
Y C+A+N P + + G + +G T + C+
Sbjct: 78 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 137
Query: 397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455
P YW + T ++ +YS+ D L I N D Y C+++N +
Sbjct: 138 PTPNIYW-IKNQTKVDMSNPRYSLKD---------GFLQIENSREEDQGKYECVAENSM 186
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAY 361
V+ G V + C A G+P P+I W ++ K + + + + S + L + G Y
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTK-VDMSNPRYS-LKDGFLQIENSREEDQGKY 178
Query: 362 MCLADNV-------PPQILIRNRRVG 380
C+A+N + ++ RRVG
Sbjct: 179 ECVAENSMGTEHSKATNLYVKVRRVG 204
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
P I+ R + + GR A L+C P+S W +GT++ H IS ++ G+
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT-- 63
Query: 430 YIMQLNISNVNISDFDTYRCISKN 453
LN S+V +SD Y C+ N
Sbjct: 64 ----LNFSHVLLSDTGVYTCMVTN 83
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINR 355
+SS +V+R G ++ L C+A+G P P I W K + P +++ A L T ++
Sbjct: 229 ASSQMVLR-GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA---LRITNVSE 284
Query: 356 INMGAYMCLADN 367
+ G Y CLA N
Sbjct: 285 EDSGEYFCLASN 296
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 300 PIVVREGDNVRLRC-VATGHPKPSIIWKTSENKPIT 334
P+VV+EG + L+C G P P I W +S +PIT
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT 160
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGA 360
+++ G++ RL C A G+PKP++ W + + + VA T+ F +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAV 381
Query: 361 YMCLADN 367
Y C N
Sbjct: 382 YQCNTSN 388
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 282 QLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW 325
+L PPTI S+ +V DN+ + C A G+P PS W
Sbjct: 12 ELTQPPTITKQ----SAKDHIVDPRDNILIECEAKGNPAPSFHW 51
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 306 GDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
G NV L C A G+P P I W K E P T + + + + L I + G Y C
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPST----AEISTSGAVLKIFNIQLEDEGIYECE 183
Query: 365 ADNV 368
A+N+
Sbjct: 184 AENI 187
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI 436
R + V ATL C+V P + W + G I DG+KY I + KG Y QL I
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIADGLKYRIQEF-KGGYH---QLII 66
Query: 437 SNVNISDFDTYRCISKNEVDIAKGSLIL-FESNAKTPVPTEKE 478
++V D Y+ + N+ G+ L E AK +P E
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLE 109
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYM 362
VR N L C TGHPKP + W + I G L + RI G +
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-----------LKY-RIQEFKGGYHQ 63
Query: 363 CL----ADNVPPQILIRNRRVGVPIGRTATLECEVEA 395
+ D+ +R G + TA+LE EV A
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI 436
R + V ATL C+V P + W + G I DG+KY I + KG Y QL I
Sbjct: 10 RNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIADGLKYRIQEF-KGGYH---QLII 64
Query: 437 SNVNISDFDTYRCISKNEVDIAKGSLIL-FESNAKTPVPTEKE 478
++V D Y+ + N+ G+ L E AK +P E
Sbjct: 65 ASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLE 107
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYM 362
VR N L C TGHPKP + W + I G L + RI G +
Sbjct: 14 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-----------LKY-RIQEFKGGYHQ 61
Query: 363 CL----ADNVPPQILIRNRRVGVPIGRTATLECEVEA 395
+ D+ +R G + TA+LE EV A
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 98
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNI 436
R + V ATL C+V P + W + G I DG+KY I + KG Y QL I
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIADGLKYRIQEF-KGGYH---QLII 66
Query: 437 SNVNISDFDTYRCISKNEVDIAKGSLIL-FESNAKTPVPTEKE 478
++V D Y+ + N+ G+ L E AK +P E
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLE 109
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYM 362
VR N L C TGHPKP + W + I G L + RI G +
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-----------LKY-RIQEFKGGYHQ 63
Query: 363 CL----ADNVPPQILIRNRRVGVPIGRTATLECEVEA 395
+ D+ +R G + TA+LE EV A
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIW-------KTSENKPITLGSW 338
PP IV EH S ++V +G+ L C A G P P+I W +T ++ P +
Sbjct: 9 PPRIV--EH---PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS---- 59
Query: 339 KDSAVASSTLNFTRI-----NRINMGAYMCLADN 367
+ S +L F RI +R + G Y+C+A N
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN 93
>pdb|3HQV|B Chain B, Low Resolution, Molecular Envelope Structure Of Type I
Collagen In Situ Determined By Fiber Diffraction. Single
Type I Collagen Molecule, Rigid Body Refinement
pdb|3HR2|B Chain B, Low Resolution, Molecular Envelope Structure Of Type I
Collagen In Situ Determined By Fiber Diffraction. Single
Type I Collagen Molecule, Post Rigid Body Refinement,
'relaxed'
Length = 1028
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 161 GPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIG---------------LDGRDGLPGEP 205
GP G G PGP G G GK G +G+ G G +G + G G PG+
Sbjct: 876 GPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDX 935
Query: 206 GLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
G G+PG NG+ G+PG GL G G PG G G +G GP G GK G +G PG
Sbjct: 936 GARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSGPIGKDGRSGHPG 993
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 47/215 (21%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENK--------PITLGSWKDSAVASSTLNFTR 352
+ V + VR RC A G+P PSI W + + I L + S V S + R
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192
Query: 353 INRINMGAYMCLADN--------VPPQILIRN-----RRVGVPIGRTATLECEVE----- 394
G Y C+ +N +L R+ + G+P +TA L +VE
Sbjct: 193 ------GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246
Query: 395 ---AFPLSVRYWEFID--GTLIEHDGVKYSISDVDKGSY---QYIMQLNISNVNISDFDT 446
A P +++ + ++ G+ + DG Y G+ + + L++ NV D
Sbjct: 247 YSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 447 YRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEE 481
Y C++ N + + S L +P E+E E
Sbjct: 306 YTCLAGNSIGFSHHSAWL------VVLPAEEELVE 334
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 40/197 (20%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENK--------PITLGSWKDSAVASSTLNFTR 352
+ V + VR RC A G+P PSI W + + I L + S V S + R
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 353 INRINMGAYMCLADN--------VPPQILIRN-----RRVGVPIGRTATLECEVE----- 394
G Y C+ +N +L R+ + G+P +TA L +VE
Sbjct: 85 ------GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 138
Query: 395 ---AFPLSVRYWEFID--GTLIEHDGVKY--SISDVDKGSYQYIMQLNISNVNISDFDTY 447
A P +++ + ++ G+ + DG Y + S + ++L ++NV+ D Y
Sbjct: 139 YSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197
Query: 448 RCISKNEVDIAKGSLIL 464
C + N + +A+ + L
Sbjct: 198 LCRATNFIGVAEKAFWL 214
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 294 HIFSSSPIVVR--------EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAV 343
H +P++V EG L+C TG S+ W T +T GS++ S +
Sbjct: 307 HFTCYAPVIVEPPTDLNVTEGMAAELKC-RTGTSMTSVNWLTPNGTLMTHGSYRVRISVL 365
Query: 344 ASSTLNFTRINRINMGAYMCLADN 367
TLNFT + + G Y C+ N
Sbjct: 366 HDGTLNFTNVTVQDTGQYTCMVTN 389
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
+ V G A L+C SV W +GTL+ H + IS + G+ LN +N
Sbjct: 322 LNVTEGMAAELKCRTGTSMTSVN-WLTPNGTLMTHGSYRVRISVLHDGT------LNFTN 374
Query: 439 VNISDFDTYRCISKNEVDIAKGSLIL 464
V + D Y C+ N S L
Sbjct: 375 VTVQDTGQYTCMVTNSAGNTTASATL 400
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISN 438
+ V G A L+C SV W +GT++ H K I+ + G+ LN +N
Sbjct: 351 LNVTEGMAAELKCRASTSLTSVS-WITPNGTVMTHGAYKVRIAVLSDGT------LNFTN 403
Query: 439 VNISDFDTYRCISKNEV 455
V + D Y C+ N V
Sbjct: 404 VTVQDTGMYTCMVSNSV 420
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGA 360
V EG L+C A+ S+ W T +T G++K + ++ TLNFT + + G
Sbjct: 353 VTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGM 411
Query: 361 YMCLADN 367
Y C+ N
Sbjct: 412 YTCMVSN 418
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 30/180 (16%)
Query: 306 GDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKDSAVASSTLNFTRINRINMGA 360
G+ + C A+G P+P+I W EN+ L +++ L I + G
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG------SNTELTVRNIINSDGGP 72
Query: 361 YMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWE-F 405
Y+C A N V P I+ G+ TL C+ E P+ W+
Sbjct: 73 YVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQV-TLVCDAEGEPIPEITWKRA 131
Query: 406 IDG-TLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
+DG T E D K ++ L+I +V +SD Y C + + + + S+ L
Sbjct: 132 VDGFTFTEGD--KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 367 NVPPQILIRNRRVGVP--IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424
NVPP + R + + ++ TL C+ + FP W DG IE + + +
Sbjct: 9 NVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWT-KDGEPIEQE------DNEE 61
Query: 425 KGSYQYI-MQLNISNVNISDFDTYRCISKNE 454
K S+ Y +L I V+ SD Y CI++N+
Sbjct: 62 KYSFNYDGSELIIKKVDKSDEAEYICIAENK 92
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS--- 341
+PP++ + +++ + +V L C A G P+P++ W T + +PI ++
Sbjct: 10 VPPSVRARQSTMNATANL---SQSVTLACDADGFPEPTMTW-TKDGEPIEQEDNEEKYSF 65
Query: 342 AVASSTLNFTRINRINMGAYMCLADN 367
S L ++++ + Y+C+A+N
Sbjct: 66 NYDGSELIIKKVDKSDEAEYICIAEN 91
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 41/197 (20%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTS--ENKP--------ITLGSWK---DSAVASSTL 348
V V+ +C ++G P+P++ W + E KP + +W DS V S
Sbjct: 27 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 86
Query: 349 NFTRI-----NRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL------ECEVEAFP 397
N+T I IN + + + P + ++ + G+P +T L C+V + P
Sbjct: 87 NYTCIVENEYGSINHTYQLDVVERSPHRPIL---QAGLPANKTVALGSNVEFMCKVYSDP 143
Query: 398 LSVRYWEF---IDGTLIEHDGVKY-------SISDVDKGSYQYIMQLNISNVNISDFDTY 447
W ++G+ I D + Y ++ DK + L++ NV+ D Y
Sbjct: 144 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE----MEVLHLRNVSFEDAGEY 199
Query: 448 RCISKNEVDIAKGSLIL 464
C++ N + ++ S L
Sbjct: 200 TCLAGNSIGLSHHSAWL 216
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 41/197 (20%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTS--ENKP--------ITLGSWK---DSAVASSTL 348
V V+ +C ++G P+P++ W + E KP + +W DS V S
Sbjct: 28 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 87
Query: 349 NFTRI-----NRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL------ECEVEAFP 397
N+T I IN + + + P + ++ + G+P +T L C+V + P
Sbjct: 88 NYTCIVENEYGSINHTYQLDVVERSPHRPIL---QAGLPANKTVALGSNVEFMCKVYSDP 144
Query: 398 LSVRYWE---FIDGTLIEHDGVKY-------SISDVDKGSYQYIMQLNISNVNISDFDTY 447
W ++G+ I D + Y ++ DK + L++ NV+ D Y
Sbjct: 145 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE----MEVLHLRNVSFEDAGEY 200
Query: 448 RCISKNEVDIAKGSLIL 464
C++ N + ++ S L
Sbjct: 201 TCLAGNSIGLSHHSAWL 217
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
+ PTI G+ ++S G+++ + C A+G+P P I+W +N+ + S
Sbjct: 9 VAPTITGNLENQTTSI-----GESIEVSCTASGNPPPQIMW-FKDNETLVEDSGIVLKDG 62
Query: 345 SSTLNFTRINRINMGAYMCLADNV 368
+ L R+ + + G Y C A +V
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSV 86
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRI 356
+ + V EG V+ C A G P P+I+W + ++ S + + TL
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ 451
Query: 357 NMGAYMCLA------DNVPPQILIRN 376
+ G Y+C+A D++P + +R+
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHVRS 477
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 311 LRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI------NRINMGAYMCL 364
+ C A+G+P P IIW S+ + + L F ++ Y CL
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 365 ADNVPPQILIRNRRVGVPI---------------GRTATLECEVEAFPLSVRYWEFIDGT 409
A N I+ R+ V + G + ++CE+ P V + F+D
Sbjct: 84 ARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVVMKCEI---PSYVADFVFVD-L 139
Query: 410 LIEHDGVKYSISDVDKGSYQYIM----QLNISNVNISD-FDTYRCISKN------EVDIA 458
++ +G Y ++ + +Y++ +L+I V D + +Y+C +K+ +
Sbjct: 140 WLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSAT 199
Query: 459 KGSLILFE 466
KG L++ E
Sbjct: 200 KGRLVITE 207
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 52/155 (33%), Gaps = 25/155 (16%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKDSAVASSTLNFTRINR 355
I V + L C+A +P PS W T+ + + L S TL
Sbjct: 225 IDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQ--VSGTLIIKDAVV 282
Query: 356 INMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVR 401
+ G Y+C+ +N P I V GR A C+ P+
Sbjct: 283 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV 342
Query: 402 YWEFIDGTLIEHDGVKYSISDV---DKGSYQYIMQ 433
W DG I H I V DKG YQ ++
Sbjct: 343 SW-MKDGKAIGHSESVLRIESVKKEDKGMYQCFVR 376
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 52/156 (33%), Gaps = 25/156 (16%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKDSAVASSTLNFTRIN 354
P+ + + L C A G P PS W T+ + + L S TL
Sbjct: 227 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ--VSGTLIIKDAV 284
Query: 355 RINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV 400
+ G Y+C+ +N P I V GR A C+ P+
Sbjct: 285 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 344
Query: 401 RYWEFIDGTLIEHDGVKYSISDV---DKGSYQYIMQ 433
W DG I H I V DKG YQ ++
Sbjct: 345 VSW-MKDGKAIGHSESVLRIESVKKEDKGMYQCFVR 379
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 59/232 (25%)
Query: 311 LRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI------NRINMGAYMCL 364
+ C A+G+P P IIW S+ + + L F ++ Y CL
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 89
Query: 365 ADNVPPQILIRNRRVGVPI---------------GRTATLECEVEAFP---LSVRYWE-- 404
A N I+ R+ V + G +A ++C + +F + V W
Sbjct: 90 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 149
Query: 405 ----FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKN------ 453
+ G E+DG KY + + G +L+I V D + +Y+C +K+
Sbjct: 150 EEENYFPGA--EYDG-KYLV--LPSG------ELHIREVGPEDGYKSYQCRTKHRLTGET 198
Query: 454 EVDIAKGSLILFE----SNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQ 501
+ KG L++ E S +TP +K E + + + LCP Q
Sbjct: 199 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL-------LCPAQ 243
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 41/197 (20%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTS--ENKP--------ITLGSWK---DSAVASSTL 348
V V+ +C ++G P P++ W + E KP + +W DS V S
Sbjct: 27 AVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 86
Query: 349 NFTRI-----NRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL------ECEVEAFP 397
N+T I IN + + + P + +++ G+P +T L C+V + P
Sbjct: 87 NYTCIVENEYGSINHTYQLDVVERSPHRPILQ---AGLPANKTVALGSNVEFMCKVYSDP 143
Query: 398 LSVRYWEF---IDGTLIEHDGVKY-------SISDVDKGSYQYIMQLNISNVNISDFDTY 447
W ++G+ I D + Y ++ DK + L++ NV+ D Y
Sbjct: 144 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE----MEVLHLRNVSFEDAGEY 199
Query: 448 RCISKNEVDIAKGSLIL 464
C++ N + ++ S L
Sbjct: 200 TCLAGNSIGLSHHSAWL 216
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 52/156 (33%), Gaps = 25/156 (16%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKDSAVASSTLNFTRIN 354
P+ + + L C A G P PS W T+ + + L S TL
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ--VSGTLIIKDAV 278
Query: 355 RINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV 400
+ G Y+C+ +N P I V GR A C+ P+
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 401 RYWEFIDGTLIEHDGVKYSISDV---DKGSYQYIMQ 433
W DG I H I V DKG YQ ++
Sbjct: 339 VSW-MKDGKAIGHSESVLRIESVKKEDKGMYQCFVR 373
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 59/232 (25%)
Query: 311 LRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI------NRINMGAYMCL 364
+ C A+G+P P IIW S+ + + L F ++ Y CL
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 365 ADNVPPQILIRNRRVGVPI---------------GRTATLECEVEAFP---LSVRYWE-- 404
A N I+ R+ V + G +A ++C + +F + V W
Sbjct: 84 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 143
Query: 405 ----FIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDTYRCISKN------ 453
+ G E+DG KY + + G +L+I V D + +Y+C +K+
Sbjct: 144 EEENYFPGA--EYDG-KYLV--LPSG------ELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 454 EVDIAKGSLILFE----SNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQ 501
+ KG L++ E S +TP +K E + + + LCP Q
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL-------LCPAQ 237
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 297 SSSPIVVREG---------DNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASST 347
SS P V+R+G L CVATG P P+I+W+ K L S +DS +
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWR----KDGVLVSTQDSRIKQLE 60
Query: 348 LNFTRINRINM---GAYMCLADN 367
+I + G Y C+A
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIAST 83
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 61/170 (35%), Gaps = 27/170 (15%)
Query: 313 CVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGAYMCLADN---- 367
C +P+P I W T I L + S + L + + G Y C A+N
Sbjct: 29 CAVESYPQPEISW-TRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGG 87
Query: 368 -----------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV 416
+ P+I V + G A L C P W D L E+
Sbjct: 88 AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS-- 145
Query: 417 KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466
I+ ++ GS L I NV D YRC++KN + A L+ E
Sbjct: 146 --RIAVLESGS------LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 300 PIVVR--EGDNVRLRCVATGHPKPSIIW-----KTSENKPITLGSWKDSAVASSTLNFTR 352
PI V+ EG L C G+PKPS+ W EN I + + S +L
Sbjct: 107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRI-------AVLESGSLRIHN 159
Query: 353 INRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLECEVEA 395
+ + + G Y C+A N +G + LE EV A
Sbjct: 160 VQKEDAGQYRCVAKN----------SLGTAYSKLVKLEVEVFA 192
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 33/166 (19%)
Query: 313 CVATGHPKPSIIW----KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA--- 365
C ATG PKP I W K ++ + + D A + + R+ R + Y C A
Sbjct: 29 CQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQR-DEAIYECTATNS 87
Query: 366 ---------------DNVP---PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID 407
D +P P I + + V GRTAT+ C P W F D
Sbjct: 88 LGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW-FKD 146
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
++ I + G+ Q I + SD Y C++ N
Sbjct: 147 FLPVDPAASNGRIKQLRSGALQ------IESSEESDQGKYECVATN 186
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKP------ITLGSWKDSA--------VAS 345
P V+ E + C + G+P PS WK +K IT G W A V+S
Sbjct: 416 PQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSS 475
Query: 346 STLNFTR 352
STLN +
Sbjct: 476 STLNMSE 482
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
PP IL + + TA L+C+ PL V W +G + D + +
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWL--------KEGFTFPGRD-PRATI 58
Query: 429 QYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
Q L I N+ ISD TY C++ + S +L
Sbjct: 59 QEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 285 IPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA 344
+ PTI G+ ++S G+++ + C A+G+P P I+W +N+ + S
Sbjct: 665 VAPTITGNLENQTTSI-----GESIEVSCTASGNPPPQIMW-FKDNETLVEDSGIVLKDG 718
Query: 345 SSTLNFTRINRINMGAYMCLADNV 368
+ L R+ + + G Y C A +V
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSV 742
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 295 IFSSSPIV-VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-------- 345
+ SS P V + E + V+L C +G P + WK + L + + AS
Sbjct: 6 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 65
Query: 346 -STLNFTRINRINMGAYMCLA 365
+ + F + R + G Y C+
Sbjct: 66 PTGITFKSVTREDTGTYTCMV 86
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
GD+V L C TG P W+T + P+ G + +STL ++ N +Y+C A
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEG-TTSTLTMNPVSFGNEHSYLCTA 73
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
GD+V L C TG P W+T + P+ G + +STL ++ N +Y+C A
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEG-TTSTLTMNPVSFGNEHSYLCTA 73
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
GD+V L C TG P W+T + P+ G + +STL ++ N +Y+C A
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEG-TTSTLTMNPVSFGNEHSYLCTA 73
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 17/75 (22%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTL------NFTRINRINM 358
EG + + C + G+P P +W+ EN G +++ + +S N+T +N +N+
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKEN-----GVFEEISNSSGRFFIINKENYTELNIVNL 160
Query: 359 ------GAYMCLADN 367
G Y C A N
Sbjct: 161 QITEDPGEYECNATN 175
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 59/166 (35%), Gaps = 30/166 (18%)
Query: 313 CVATGHPKPSIIW----KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368
C ATG P+P I+W K N+ + + D + + + R R + Y C+A N
Sbjct: 28 CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPR-DEAIYECVASNN 86
Query: 369 PPQILIRNRRV-----GVPIG----------------RTATLECEVEAFPLSVRYWEFID 407
+I + R +P G RTAT+ C P W F D
Sbjct: 87 VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITW-FKD 145
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
++ I + S I L I SD Y C++ N
Sbjct: 146 FLPVDTSNNNGRIKQLRSES---IGALQIEQSEESDQGKYECVATN 188
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPI--TLGSWKDSAVASSTLNFTRINRINMG 359
VV + C A+G+P P I W + P+ + + + + S L + G
Sbjct: 119 VVERTRTATMLCAASGNPDPEITW-FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 360 AYMCLADN-------VPPQILIRNRRVG 380
Y C+A N P + +R RRV
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVRRVA 205
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 33/170 (19%)
Query: 313 CVATGHPKPSIIW----KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368
C ATG PKP + W K ++ + +SA A + R R + Y C+A N
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR-DENVYECVAQNS 86
Query: 369 PPQILIRN-----RRVGVPIG----------------RTATLECEVEAFPLSVRYWEFID 407
+I + R +P G RTAT+ C P W F D
Sbjct: 87 VGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW-FKD 145
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
++ I + G+ Q I + +D Y C++ N +
Sbjct: 146 FLPVDPSASNGRIKQLRSGALQ------IESSEETDQGKYECVATNSAGV 189
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 33/170 (19%)
Query: 313 CVATGHPKPSIIW----KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368
C ATG PKP + W K ++ + +SA A + R R + Y C+A N
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR-DENVYECVAQNS 86
Query: 369 PPQILIRN-----RRVGVPIG----------------RTATLECEVEAFPLSVRYWEFID 407
+I + R +P G RTAT+ C P W F D
Sbjct: 87 VGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW-FKD 145
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
++ I + G+ Q I + +D Y C++ N +
Sbjct: 146 FLPVDPSASNGRIKQLRSGALQ------IESSEETDQGKYECVATNSAGV 189
>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 242
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 383 IGRTATLECEVEAFPLSVR--YW---------EFI-----DGTLIEHDGVKYSISDVDKG 426
+ +TA LEC V +S YW +F+ DGT+ + G+ +VD+
Sbjct: 15 LSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI 74
Query: 427 SYQYIMQLNISNVNISDFDTYRC 449
L I NV D TY C
Sbjct: 75 PETSTSTLTIHNVEKQDIATYYC 97
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYM 362
V G V+L C ATGHP W NK I G+ +S L F ++ + G Y+
Sbjct: 30 VLAGQFVKLCCRATGHPFVQYQW-FKMNKEIPNGN-------TSELIFNAVHVKDAGFYV 81
Query: 363 CLADN 367
C +N
Sbjct: 82 CRVNN 86
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSAV------------ASSTLNFT 351
G +V L C A G P P I W P + S W + + A+ST++
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 352 RINRINMGAYMCLADNVP 369
+ + G Y C A N P
Sbjct: 96 TLVEEDTGTYECRASNDP 113
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 409 TLIEHDGVKYSI---SDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453
++H+ K +I SD YQ ++ LN+ V+ Y C++ N
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASN 266
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSAV------------ASSTLNFT 351
G +V L C A G P P I W P + S W + + A+ST++
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 352 RINRINMGAYMCLADNVP 369
+ + G Y C A N P
Sbjct: 96 TLVEEDTGTYECRASNDP 113
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 33/170 (19%)
Query: 313 CVATGHPKPSIIW----KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368
C ATG PKP + W K ++ + +SA A + R R + Y C+A N
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR-DENVYECVAQNS 86
Query: 369 PPQILIRN-----RRVGVPIG----------------RTATLECEVEAFPLSVRYWEFID 407
+I + R +P G RTAT+ C P W F D
Sbjct: 87 VGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW-FKD 145
Query: 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457
++ I + G+ Q I + +D Y C++ N +
Sbjct: 146 FLPVDPSASNGRIKQLRSGALQ------IESSEETDQGKYECVATNSAGV 189
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIWK 326
P+ V G L+CV G P P ++W+
Sbjct: 23 PVRVVSGAEAELKCVVLGEPPPVVVWE 49
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRIN 357
+ V+EG R+ C +G P P + W+ + KP+ S V + +L + +
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKMLVRENGVHSLIIEPVTSRD 77
Query: 358 MGAYMCLADN 367
G Y C+A N
Sbjct: 78 AGIYTCIATN 87
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIWK 326
P+ V G L+CV G P P ++W+
Sbjct: 23 PVRVVSGAEAELKCVVLGEPPPVVVWE 49
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA-SSTLNFTRINRINMG 359
+ + G+ +L C G P P I W + I +K S+ + TL + + G
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 360 AYMCLADN 367
Y C+A N
Sbjct: 77 VYTCIATN 84
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIW-------KTSENKPITLGSWKDSAVASSTLNFTRI 353
+ V EG++ R C G P P++ W TS +T +K ST + +
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK------STFEISSV 77
Query: 354 NRINMGAYMCLADN 367
+ G Y + +N
Sbjct: 78 QASDEGNYSVVVEN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 300 PIVVREGDNVRLRCVATGHPKPSIIWK 326
P+ V G L+CV G P P ++W+
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVVVWE 48
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIW-------KTSENKPITLGSWKDSAVASSTLNFTRI 353
+ V EG++ R C G P P++ W TS +T +K ST + +
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK------STFEISSV 71
Query: 354 NRINMGAYMCLADN 367
+ G Y + +N
Sbjct: 72 QASDEGNYSVVVEN 85
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNF 350
+G + C A G P PS+ W T + S+K S A+ T F
Sbjct: 132 QGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEF 177
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWK 326
V EGD+V+L C + P P + WK
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWK 50
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPS--IIWKTSENKPITLGSW-KDSAVASSTLNFTRINR 355
S ++VR GD +RL C G K + I+ +T+ENK W + A A++T +T N+
Sbjct: 19 SDLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQ---NEWITEKAEATNTGKYTCTNK 75
Query: 356 INMGAYMCLADNVPPQILIRNRRV 379
+ + + P ++ + +R +
Sbjct: 76 HGLSNSIYVFVRDPAKLFLVDRSL 99
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPS--IIWKTSENKPITLGSW-KDSAVASSTLNFTRINR 355
S ++VR GD +RL C G K + I+ +T+ENK W + A A++T +T N+
Sbjct: 44 SDLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQ---NEWITEKAEATNTGKYTCTNK 100
Query: 356 INMGAYMCLADNVPPQILIRNRRV 379
+ + + P ++ + +R +
Sbjct: 101 HGLSNSIYVFVRDPAKLFLVDRSL 124
>pdb|1PW9|A Chain A, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D
pdb|1PW9|B Chain B, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D
pdb|1PW9|C Chain C, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D
pdb|1PWB|A Chain A, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D With Maltose
pdb|1PWB|B Chain B, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D With Maltose
pdb|1PWB|C Chain C, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D With Maltose
pdb|3IKN|A Chain A, Crystal Structure Of Galactose Bound Trimeric Human Lung
Surfactant Protein D
pdb|3IKN|B Chain B, Crystal Structure Of Galactose Bound Trimeric Human Lung
Surfactant Protein D
pdb|3IKN|C Chain C, Crystal Structure Of Galactose Bound Trimeric Human Lung
Surfactant Protein D
pdb|3IKP|A Chain A, Crystal Structure Of Inositol Phosphate Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKP|B Chain B, Crystal Structure Of Inositol Phosphate Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKP|C Chain C, Crystal Structure Of Inositol Phosphate Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKQ|A Chain A, Crystal Structure Of Alpha 1-2 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKQ|B Chain B, Crystal Structure Of Alpha 1-2 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKQ|C Chain C, Crystal Structure Of Alpha 1-2 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKR|A Chain A, Crystal Structure Of Alpha 1-4 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKR|B Chain B, Crystal Structure Of Alpha 1-4 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKR|C Chain C, Crystal Structure Of Alpha 1-4 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
Length = 177
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 221 GKDGLPGKDGIPGTNGTNGEKGM 243
G GL G GIPG G GE G+
Sbjct: 1 GSPGLKGDKGIPGDKGAKGESGL 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,601,964
Number of Sequences: 62578
Number of extensions: 1465960
Number of successful extensions: 4161
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2850
Number of HSP's gapped (non-prelim): 738
length of query: 902
length of database: 14,973,337
effective HSP length: 108
effective length of query: 794
effective length of database: 8,214,913
effective search space: 6522640922
effective search space used: 6522640922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)