Query psy12803
Match_columns 902
No_of_seqs 817 out of 3776
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 20:07:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00284 OLF Olfactomedin-li 100.0 9.3E-79 2E-83 636.6 28.9 247 552-808 2-254 (255)
2 PF02191 OLF: Olfactomedin-lik 100.0 2E-76 4.4E-81 626.7 28.7 244 552-808 1-249 (250)
3 KOG3545|consensus 100.0 1E-74 2.2E-79 592.0 22.5 245 551-809 1-249 (249)
4 KOG3513|consensus 99.9 1E-21 2.3E-26 235.6 15.2 196 263-474 309-521 (1051)
5 KOG3513|consensus 99.8 4.2E-20 9.2E-25 221.9 20.2 198 298-506 248-461 (1051)
6 KOG3544|consensus 99.8 1.9E-19 4.1E-24 201.3 19.2 98 42-139 20-140 (327)
7 KOG4194|consensus 99.8 7.5E-19 1.6E-23 196.8 15.1 210 288-506 500-742 (873)
8 KOG4194|consensus 99.8 1.3E-18 2.7E-23 195.0 15.4 195 263-471 589-800 (873)
9 KOG3546|consensus 99.7 3E-17 6.5E-22 182.9 18.4 37 241-277 639-675 (1167)
10 KOG4221|consensus 99.7 8.9E-17 1.9E-21 192.1 18.5 194 263-472 116-331 (1381)
11 KOG3546|consensus 99.7 1.5E-16 3.2E-21 177.4 17.4 38 720-763 1101-1140(1167)
12 PHA02826 IL-1 receptor-like pr 99.7 1.1E-16 2.4E-21 168.9 13.3 148 299-455 30-211 (227)
13 KOG4221|consensus 99.7 4.3E-17 9.3E-22 194.8 10.5 167 294-471 240-420 (1381)
14 KOG4222|consensus 99.7 1.5E-16 3.2E-21 189.4 11.1 229 263-507 107-351 (1281)
15 KOG3544|consensus 99.6 4.4E-15 9.4E-20 166.1 18.9 22 110-131 114-135 (327)
16 KOG4222|consensus 99.6 2.6E-15 5.7E-20 178.8 17.4 205 293-507 33-261 (1281)
17 PHA02785 IL-beta-binding prote 99.6 5.5E-15 1.2E-19 165.0 17.4 154 300-458 130-318 (326)
18 PHA02785 IL-beta-binding prote 99.6 4.3E-15 9.4E-20 165.8 15.9 152 301-468 36-217 (326)
19 cd05762 Ig8_MLCK Eighth immuno 99.5 2.3E-13 5E-18 125.0 11.7 97 370-473 1-97 (98)
20 cd05851 Ig3_Contactin-1 Third 99.4 1.4E-12 3E-17 117.4 10.9 88 369-467 1-88 (88)
21 cd05735 Ig8_DSCAM Eight immuno 99.4 4.8E-12 1E-16 113.9 11.6 87 384-472 1-87 (88)
22 cd04975 Ig4_SCFR_like Fourth i 99.4 4.7E-12 1E-16 116.9 11.8 89 377-467 11-100 (101)
23 cd05737 Ig_Myomesin_like_C C-t 99.3 5.5E-12 1.2E-16 114.4 10.5 86 375-466 7-92 (92)
24 cd05865 Ig1_NCAM-1 First immun 99.3 1.1E-11 2.5E-16 113.3 12.3 91 372-466 3-95 (96)
25 cd05859 Ig4_PDGFR-alpha Fourth 99.3 8.9E-12 1.9E-16 115.1 10.9 89 378-467 12-100 (101)
26 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 1.2E-11 2.5E-16 110.9 11.0 83 378-466 4-86 (86)
27 PF07679 I-set: Immunoglobulin 99.3 1.6E-11 3.5E-16 110.1 12.0 90 370-466 1-90 (90)
28 cd05892 Ig_Myotilin_C C-termin 99.3 9.2E-12 2E-16 108.6 9.9 75 387-466 1-75 (75)
29 cd04968 Ig3_Contactin_like Thi 99.3 1.4E-11 3E-16 110.6 11.0 88 369-467 1-88 (88)
30 cd05869 Ig5_NCAM-1 Fifth immun 99.3 2.6E-11 5.7E-16 111.0 12.5 93 369-466 2-97 (97)
31 cd05747 Ig5_Titin_like M5, fif 99.3 1.2E-11 2.6E-16 112.1 10.1 91 368-465 2-92 (92)
32 cd05730 Ig3_NCAM-1_like Third 99.3 2.5E-11 5.5E-16 110.5 10.8 92 369-468 1-94 (95)
33 cd05745 Ig3_Peroxidasin Third 99.3 1.4E-11 3.1E-16 106.8 8.6 74 383-466 1-74 (74)
34 cd05893 Ig_Palladin_C C-termin 99.3 2E-11 4.3E-16 106.5 9.4 75 387-466 1-75 (75)
35 cd05870 Ig5_NCAM-2 Fifth immun 99.3 4.4E-11 9.5E-16 109.8 11.9 93 368-466 1-98 (98)
36 cd05728 Ig4_Contactin-2-like F 99.3 1.9E-11 4.2E-16 109.1 8.8 84 372-466 2-85 (85)
37 cd05852 Ig5_Contactin-1 Fifth 99.2 2E-11 4.4E-16 105.9 8.4 73 384-466 1-73 (73)
38 cd05732 Ig5_NCAM-1_like Fifth 99.2 6.3E-11 1.4E-15 107.9 11.5 92 369-466 2-96 (96)
39 cd05891 Ig_M-protein_C C-termi 99.2 3.5E-11 7.6E-16 109.2 9.7 86 375-466 7-92 (92)
40 cd07693 Ig1_Robo First immunog 99.2 5.1E-11 1.1E-15 108.6 10.9 95 369-466 1-99 (100)
41 cd05867 Ig4_L1-CAM_like Fourth 99.2 4.4E-11 9.4E-16 104.4 9.7 75 384-467 1-76 (76)
42 cd04972 Ig_TrkABC_d4 Fourth do 99.2 3.9E-11 8.4E-16 108.3 9.7 87 373-466 4-90 (90)
43 cd05857 Ig2_FGFR Second immuno 99.2 5.5E-11 1.2E-15 105.7 10.1 81 379-466 4-85 (85)
44 cd05723 Ig4_Neogenin Fourth im 99.2 7.2E-11 1.6E-15 101.7 10.3 71 386-466 1-71 (71)
45 cd05758 Ig5_KIRREL3-like Fifth 99.2 8.8E-11 1.9E-15 107.8 11.3 94 369-464 2-97 (98)
46 cd05773 Ig8_hNephrin_like Eigh 99.2 9.5E-11 2.1E-15 109.9 11.7 101 368-470 3-108 (109)
47 cd05868 Ig4_NrCAM Fourth immun 99.2 6.1E-11 1.3E-15 103.6 9.4 75 384-466 1-75 (76)
48 cd05744 Ig_Myotilin_C_like Imm 99.2 7.6E-11 1.6E-15 102.8 9.8 75 387-466 1-75 (75)
49 cd05854 Ig6_Contactin-2 Sixth 99.2 1.2E-10 2.7E-15 104.0 10.9 82 385-470 1-85 (85)
50 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 9.6E-11 2.1E-15 103.7 9.8 78 388-465 2-79 (81)
51 cd05866 Ig1_NCAM-2 First immun 99.2 1.7E-10 3.6E-15 104.8 11.4 88 372-466 3-91 (92)
52 cd04978 Ig4_L1-NrCAM_like Four 99.2 8.2E-11 1.8E-15 102.2 9.1 76 384-467 1-76 (76)
53 cd05863 Ig2_VEGFR-3 Second imm 99.2 6.9E-11 1.5E-15 100.7 8.3 66 387-467 1-66 (67)
54 cd05855 Ig_TrkB_d5 Fifth domai 99.2 9.8E-11 2.1E-15 103.0 9.2 76 388-465 2-77 (79)
55 cd05748 Ig_Titin_like Immunogl 99.2 9.2E-11 2E-15 101.6 8.7 74 386-466 1-74 (74)
56 cd05848 Ig1_Contactin-5 First 99.2 1.9E-10 4E-15 104.9 11.0 86 370-464 2-92 (94)
57 cd05850 Ig1_Contactin-2 First 99.2 2.4E-10 5.3E-15 104.1 11.5 86 370-464 2-92 (94)
58 cd05763 Ig_1 Subgroup of the i 99.2 1.4E-10 3E-15 100.8 8.9 73 387-466 1-74 (75)
59 cd04969 Ig5_Contactin_like Fif 99.2 1.4E-10 3.1E-15 100.2 8.9 73 384-466 1-73 (73)
60 cd05764 Ig_2 Subgroup of the i 99.1 2.1E-10 4.5E-15 99.3 9.7 74 384-466 1-74 (74)
61 cd05726 Ig4_Robo Fhird immunog 99.1 2.8E-10 6E-15 102.7 10.7 80 384-471 1-86 (90)
62 cd04970 Ig6_Contactin_like Six 99.1 2.6E-10 5.6E-15 101.7 10.0 82 385-470 1-85 (85)
63 cd04974 Ig3_FGFR Third immunog 99.1 2.3E-10 4.9E-15 103.4 9.3 84 384-467 1-90 (90)
64 cd05853 Ig6_Contactin-4 Sixth 99.1 2.7E-10 5.8E-15 101.7 9.4 82 385-470 1-85 (85)
65 cd05858 Ig3_FGFR-2 Third immun 99.1 2.8E-10 6E-15 102.8 9.6 83 384-466 1-89 (90)
66 cd04977 Ig1_NCAM-1_like First 99.1 7.1E-10 1.5E-14 100.6 12.2 89 372-466 3-92 (92)
67 cd05876 Ig3_L1-CAM Third immun 99.1 2.6E-10 5.7E-15 98.2 8.4 70 387-466 1-70 (71)
68 cd05722 Ig1_Neogenin First imm 99.1 4.3E-10 9.4E-15 102.5 10.1 87 372-466 2-95 (95)
69 cd05856 Ig2_FGFRL1-like Second 99.1 2.4E-10 5.3E-15 100.4 8.2 79 379-466 4-82 (82)
70 cd05725 Ig3_Robo Third immunog 99.1 3.1E-10 6.7E-15 97.0 8.3 69 387-466 1-69 (69)
71 cd05849 Ig1_Contactin-1 First 99.1 5.8E-10 1.3E-14 101.5 10.5 86 369-464 1-91 (93)
72 cd04976 Ig2_VEGFR Second immun 99.1 3E-10 6.5E-15 97.9 7.9 70 387-467 1-70 (71)
73 cd05760 Ig2_PTK7 Second immuno 99.1 4.2E-10 9.1E-15 98.5 8.9 73 387-467 1-75 (77)
74 cd05746 Ig4_Peroxidasin Fourth 99.1 2.6E-10 5.6E-15 97.6 7.2 68 387-464 1-68 (69)
75 cd05743 Ig_Perlecan_D2_like Im 99.1 3.9E-10 8.5E-15 98.9 8.4 76 384-466 1-76 (78)
76 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.2E-09 2.5E-14 100.2 11.8 94 369-464 2-97 (98)
77 cd05736 Ig2_Follistatin_like S 99.1 4.7E-10 1E-14 97.7 8.8 75 387-468 1-75 (76)
78 cd05851 Ig3_Contactin-1 Third 99.1 2.5E-10 5.5E-15 102.7 7.3 70 295-367 5-74 (88)
79 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 3.7E-10 8.1E-15 98.0 8.0 72 387-466 1-73 (74)
80 cd05765 Ig_3 Subgroup of the i 99.1 5.4E-10 1.2E-14 98.2 9.1 77 384-466 1-81 (81)
81 cd05740 Ig_CEACAM_D4 Fourth im 99.1 7.5E-10 1.6E-14 100.3 10.1 86 370-466 2-90 (91)
82 cd05724 Ig2_Robo Second immuno 99.1 6.7E-10 1.4E-14 98.8 9.4 83 375-466 2-86 (86)
83 cd04973 Ig1_FGFR First immunog 99.1 5.6E-10 1.2E-14 98.2 8.5 78 377-466 2-79 (79)
84 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 6.1E-10 1.3E-14 95.4 8.5 68 384-464 1-68 (69)
85 cd05771 IgC_Tapasin_R Tapasin- 99.0 1.3E-09 2.8E-14 106.6 11.7 109 347-455 2-131 (139)
86 cd05864 Ig2_VEGFR-2 Second imm 99.0 3.9E-10 8.5E-15 97.0 6.8 69 387-467 1-69 (70)
87 cd05731 Ig3_L1-CAM_like Third 99.0 6.6E-10 1.4E-14 95.1 8.2 70 387-466 1-70 (71)
88 cd05762 Ig8_MLCK Eighth immuno 99.0 3.6E-10 7.8E-15 103.9 6.6 73 295-367 4-77 (98)
89 cd05756 Ig1_IL1R_like First im 99.0 9.2E-10 2E-14 100.4 8.7 83 377-466 7-94 (94)
90 cd05745 Ig3_Peroxidasin Third 99.0 3.6E-10 7.9E-15 98.0 5.3 61 305-367 1-61 (74)
91 cd05742 Ig1_VEGFR_like First i 99.0 2.3E-09 5E-14 95.3 10.5 81 384-466 1-83 (84)
92 cd05730 Ig3_NCAM-1_like Third 99.0 5.8E-10 1.3E-14 101.5 6.1 69 298-367 10-79 (95)
93 cd05737 Ig_Myomesin_like_C C-t 99.0 4.7E-10 1E-14 101.7 5.5 70 298-367 8-79 (92)
94 cd05865 Ig1_NCAM-1 First immun 99.0 7.4E-10 1.6E-14 101.4 6.8 72 297-368 6-82 (96)
95 cd05747 Ig5_Titin_like M5, fif 99.0 6.5E-10 1.4E-14 100.7 6.3 73 295-367 7-80 (92)
96 cd05867 Ig4_L1-CAM_like Fourth 99.0 4.8E-10 1E-14 97.8 5.0 62 306-367 1-62 (76)
97 cd05852 Ig5_Contactin-1 Fifth 99.0 5.6E-10 1.2E-14 96.8 5.2 60 306-367 1-60 (73)
98 cd05750 Ig_Pro_neuregulin Immu 99.0 2.3E-09 5E-14 92.7 8.9 73 387-464 1-75 (75)
99 cd05749 Ig2_Tyro3_like Second 99.0 1.7E-09 3.7E-14 95.8 8.0 78 372-464 1-80 (81)
100 cd04975 Ig4_SCFR_like Fourth i 99.0 7.1E-10 1.5E-14 102.4 5.8 68 299-367 11-86 (101)
101 cd04968 Ig3_Contactin_like Thi 99.0 8.6E-10 1.9E-14 98.9 6.1 69 296-367 6-74 (88)
102 cd04967 Ig1_Contactin First Ig 99.0 3.9E-09 8.5E-14 95.4 10.0 82 370-460 2-87 (91)
103 cd05894 Ig_C5_MyBP-C C5 immuno 98.9 9.9E-10 2.1E-14 98.4 5.8 67 300-367 4-73 (86)
104 cd05860 Ig4_SCFR Fourth immuno 98.9 9.2E-09 2E-13 94.0 12.1 90 376-467 10-100 (101)
105 cd05734 Ig7_DSCAM Seventh immu 98.9 3.2E-09 6.9E-14 93.3 8.3 72 387-466 1-79 (79)
106 cd05722 Ig1_Neogenin First imm 98.9 3.6E-09 7.8E-14 96.4 8.8 77 296-372 4-86 (95)
107 cd05870 Ig5_NCAM-2 Fifth immun 98.9 2.4E-09 5.1E-14 98.3 7.7 73 295-367 5-85 (98)
108 cd05724 Ig2_Robo Second immuno 98.9 2.4E-09 5.3E-14 95.2 7.5 69 298-367 3-72 (86)
109 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 1.3E-08 2.8E-13 90.8 11.7 81 384-467 1-83 (84)
110 cd04978 Ig4_L1-NrCAM_like Four 98.9 1.3E-09 2.8E-14 94.7 5.0 62 306-367 1-62 (76)
111 cd05848 Ig1_Contactin-5 First 98.9 2.6E-09 5.6E-14 97.4 7.3 74 295-369 5-82 (94)
112 cd05728 Ig4_Contactin-2-like F 98.9 1.6E-09 3.4E-14 96.8 5.7 68 297-367 5-72 (85)
113 cd04972 Ig_TrkABC_d4 Fourth do 98.9 1.5E-09 3.3E-14 97.8 5.6 71 297-367 6-77 (90)
114 cd05868 Ig4_NrCAM Fourth immun 98.9 1.1E-09 2.4E-14 95.6 4.5 62 306-367 1-62 (76)
115 cd05729 Ig2_FGFR_like Second i 98.9 8.2E-09 1.8E-13 91.1 10.2 82 379-466 4-85 (85)
116 cd05866 Ig1_NCAM-2 First immun 98.9 2.1E-09 4.6E-14 97.5 6.3 69 297-367 6-77 (92)
117 cd05875 Ig6_hNeurofascin_like 98.9 7.7E-09 1.7E-13 90.6 9.3 67 387-460 1-71 (77)
118 cd05733 Ig6_L1-CAM_like Sixth 98.9 4.3E-09 9.3E-14 92.1 7.7 67 387-460 1-71 (77)
119 cd05740 Ig_CEACAM_D4 Fourth im 98.9 2.1E-09 4.6E-14 97.3 5.9 68 298-368 10-77 (91)
120 cd07693 Ig1_Robo First immunog 98.9 5E-09 1.1E-13 95.4 8.3 73 295-367 5-85 (100)
121 cd05874 Ig6_NrCAM Sixth immuno 98.9 7.7E-09 1.7E-13 90.6 8.9 67 387-460 1-71 (77)
122 cd05892 Ig_Myotilin_C C-termin 98.9 1.4E-09 3.1E-14 94.8 4.0 59 309-368 1-63 (75)
123 cd07702 Ig2_VEGFR-1 Second imm 98.9 5.5E-09 1.2E-13 90.3 7.5 69 387-465 1-69 (72)
124 cd05891 Ig_M-protein_C C-termi 98.9 2.4E-09 5.3E-14 97.1 5.5 70 298-367 8-79 (92)
125 cd05895 Ig_Pro_neuregulin-1 Im 98.9 8.2E-09 1.8E-13 89.9 8.7 73 387-464 1-76 (76)
126 PF07679 I-set: Immunoglobulin 98.9 2.3E-09 4.9E-14 96.1 5.1 73 295-367 4-77 (90)
127 cd05732 Ig5_NCAM-1_like Fifth 98.8 3.9E-09 8.5E-14 96.0 5.9 72 296-367 6-83 (96)
128 cd05882 Ig1_Necl-1 First (N-te 98.8 2E-08 4.4E-13 91.7 10.5 86 376-466 4-95 (95)
129 cd05758 Ig5_KIRREL3-like Fifth 98.8 5.5E-09 1.2E-13 95.8 6.8 75 293-367 3-86 (98)
130 cd05850 Ig1_Contactin-2 First 98.8 6.9E-09 1.5E-13 94.5 7.3 74 295-369 5-82 (94)
131 cd05752 Ig1_FcgammaR_like Frst 98.8 7.6E-09 1.7E-13 90.9 7.3 67 370-454 1-68 (78)
132 cd05738 Ig2_RPTP_IIa_LAR_like 98.8 2.6E-09 5.6E-14 92.8 4.1 59 309-367 1-59 (74)
133 cd05754 Ig3_Perlecan_like Thir 98.8 1.2E-08 2.7E-13 90.8 8.6 79 374-465 6-85 (85)
134 cd05849 Ig1_Contactin-1 First 98.8 5.9E-09 1.3E-13 94.9 6.5 70 297-368 7-80 (93)
135 cd04977 Ig1_NCAM-1_like First 98.8 6.2E-09 1.3E-13 94.5 6.6 70 297-367 6-78 (92)
136 cd04969 Ig5_Contactin_like Fif 98.8 4E-09 8.7E-14 91.1 5.1 60 306-367 1-60 (73)
137 cd05859 Ig4_PDGFR-alpha Fourth 98.8 4.1E-09 8.9E-14 97.4 5.4 69 300-368 12-87 (101)
138 cd05893 Ig_Palladin_C C-termin 98.8 2.4E-09 5.3E-14 93.3 3.6 59 309-368 1-63 (75)
139 cd05749 Ig2_Tyro3_like Second 98.8 5.7E-09 1.2E-13 92.4 5.9 64 297-367 4-68 (81)
140 cd05760 Ig2_PTK7 Second immuno 98.8 4.2E-09 9.1E-14 92.2 4.8 60 309-368 1-60 (77)
141 cd05726 Ig4_Robo Fhird immunog 98.8 7.3E-09 1.6E-13 93.4 6.5 62 306-367 1-68 (90)
142 cd05857 Ig2_FGFR Second immuno 98.8 6.8E-09 1.5E-13 92.2 5.9 67 301-367 4-72 (85)
143 cd05723 Ig4_Neogenin Fourth im 98.8 5.2E-09 1.1E-13 90.1 5.0 58 308-367 1-58 (71)
144 cd04979 Ig_Semaphorin_C Immuno 98.8 2.7E-08 5.9E-13 89.4 9.8 83 376-468 3-88 (89)
145 cd05764 Ig_2 Subgroup of the i 98.8 9E-09 2E-13 89.0 6.4 61 306-367 1-61 (74)
146 cd05869 Ig5_NCAM-1 Fifth immun 98.8 1.3E-08 2.8E-13 93.2 7.2 67 301-367 12-84 (97)
147 cd05763 Ig_1 Subgroup of the i 98.8 9.5E-09 2.1E-13 89.3 5.9 60 309-368 1-62 (75)
148 cd04973 Ig1_FGFR First immunog 98.8 1.1E-08 2.3E-13 90.1 6.0 65 299-367 2-66 (79)
149 cd05756 Ig1_IL1R_like First im 98.8 1.2E-08 2.7E-13 92.9 6.5 69 299-367 7-81 (94)
150 cd05743 Ig_Perlecan_D2_like Im 98.8 6E-09 1.3E-13 91.4 4.3 62 306-367 1-63 (78)
151 cd05873 Ig_Sema4D_like Immunog 98.8 1E-08 2.3E-13 91.8 5.8 68 297-367 2-69 (87)
152 cd07701 Ig1_Necl-3 First (N-te 98.8 3.8E-08 8.3E-13 89.9 9.6 86 376-466 4-95 (95)
153 cd05735 Ig8_DSCAM Eight immuno 98.8 8.3E-09 1.8E-13 92.8 5.2 61 306-367 1-68 (88)
154 cd05863 Ig2_VEGFR-3 Second imm 98.8 3.8E-09 8.3E-14 90.0 2.8 53 309-368 1-53 (67)
155 cd05876 Ig3_L1-CAM Third immun 98.8 6.9E-09 1.5E-13 89.3 4.3 57 309-367 1-57 (71)
156 cd05744 Ig_Myotilin_C_like Imm 98.7 8E-09 1.7E-13 90.0 4.5 58 309-367 1-62 (75)
157 cd05746 Ig4_Peroxidasin Fourth 98.7 6.6E-09 1.4E-13 88.8 3.9 57 309-367 1-57 (69)
158 cd05725 Ig3_Robo Third immunog 98.7 1E-08 2.3E-13 87.5 4.9 56 309-367 1-56 (69)
159 cd04974 Ig3_FGFR Third immunog 98.7 1.3E-08 2.8E-13 91.9 5.7 62 306-367 1-76 (90)
160 cd05739 Ig3_RPTP_IIa_LAR_like 98.7 1.5E-08 3.2E-13 86.9 5.5 57 306-367 1-57 (69)
161 cd04976 Ig2_VEGFR Second immun 98.7 6.7E-09 1.5E-13 89.5 3.4 56 309-367 1-56 (71)
162 cd05845 Ig2_L1-CAM_like Second 98.7 2.8E-08 6E-13 90.4 7.5 69 298-367 10-80 (95)
163 cd05856 Ig2_FGFRL1-like Second 98.7 1.4E-08 3.1E-13 89.1 5.4 66 301-367 4-69 (82)
164 cd05727 Ig2_Contactin-2-like S 98.7 2.6E-08 5.7E-13 90.7 7.2 69 299-367 11-81 (96)
165 cd05873 Ig_Sema4D_like Immunog 98.7 7.3E-08 1.6E-12 86.4 9.8 70 375-455 2-71 (87)
166 cd07702 Ig2_VEGFR-1 Second imm 98.7 8.1E-09 1.7E-13 89.2 3.5 57 309-367 1-57 (72)
167 cd05752 Ig1_FcgammaR_like Frst 98.7 3.2E-08 6.9E-13 87.0 7.3 61 297-367 6-67 (78)
168 cd05862 Ig1_VEGFR First immuno 98.7 7.4E-08 1.6E-12 86.3 9.4 83 384-468 1-86 (86)
169 cd05882 Ig1_Necl-1 First (N-te 98.7 2.4E-08 5.1E-13 91.3 6.3 70 298-367 4-83 (95)
170 cd04967 Ig1_Contactin First Ig 98.7 4.2E-08 9.2E-13 88.6 7.2 72 296-368 6-81 (91)
171 cd05858 Ig3_FGFR-2 Third immun 98.7 2.2E-08 4.8E-13 90.3 5.2 62 306-367 1-76 (90)
172 cd05734 Ig7_DSCAM Seventh immu 98.7 2E-08 4.2E-13 88.2 4.7 59 309-367 1-65 (79)
173 cd05733 Ig6_L1-CAM_like Sixth 98.7 2.7E-08 6E-13 87.0 5.5 59 309-367 1-64 (77)
174 cd05748 Ig_Titin_like Immunogl 98.7 1.9E-08 4.1E-13 87.1 4.2 60 308-367 1-61 (74)
175 cd04970 Ig6_Contactin_like Six 98.7 2E-08 4.4E-13 89.4 4.5 62 307-368 1-69 (85)
176 cd05864 Ig2_VEGFR-2 Second imm 98.6 1.3E-08 2.8E-13 87.5 2.7 55 309-367 1-55 (70)
177 cd05854 Ig6_Contactin-2 Sixth 98.6 3E-08 6.5E-13 88.6 5.0 61 307-367 1-68 (85)
178 cd05765 Ig_3 Subgroup of the i 98.6 5.2E-08 1.1E-12 85.5 6.3 62 306-367 1-68 (81)
179 cd05874 Ig6_NrCAM Sixth immuno 98.6 4.2E-08 9.2E-13 85.9 5.5 59 309-367 1-64 (77)
180 cd05754 Ig3_Perlecan_like Thir 98.6 5.8E-08 1.3E-12 86.4 6.2 68 296-368 6-74 (85)
181 cd05731 Ig3_L1-CAM_like Third 98.6 2.5E-08 5.4E-13 85.2 3.6 57 309-367 1-57 (71)
182 cd07701 Ig1_Necl-3 First (N-te 98.6 5.3E-08 1.1E-12 89.0 6.0 70 298-367 4-83 (95)
183 cd05853 Ig6_Contactin-4 Sixth 98.6 4.1E-08 9E-13 87.6 5.1 62 307-368 1-69 (85)
184 cd04979 Ig_Semaphorin_C Immuno 98.6 7.4E-08 1.6E-12 86.6 6.6 69 298-367 3-72 (89)
185 cd05757 Ig2_IL1R_like Second i 98.6 1.4E-07 3.1E-12 85.6 8.5 78 378-466 4-86 (92)
186 cd05717 Ig1_Necl-1-3_like Firs 98.6 3.7E-07 8.1E-12 83.1 11.1 85 377-466 5-95 (95)
187 cd05875 Ig6_hNeurofascin_like 98.6 5.4E-08 1.2E-12 85.3 5.3 59 309-367 1-64 (77)
188 cd05773 Ig8_hNephrin_like Eigh 98.6 8.6E-08 1.9E-12 89.9 7.0 62 305-367 22-91 (109)
189 cd05855 Ig_TrkB_d5 Fifth domai 98.6 3E-08 6.5E-13 87.3 3.5 57 311-367 3-65 (79)
190 cd04971 Ig_TrKABC_d5 Fifth dom 98.6 3.2E-08 6.9E-13 87.7 3.5 58 310-367 2-67 (81)
191 cd05871 Ig_Semaphorin_classIII 98.6 3.5E-07 7.6E-12 82.9 10.2 81 378-468 5-90 (91)
192 KOG3515|consensus 98.6 1.9E-07 4E-12 111.4 10.5 163 302-468 18-202 (741)
193 cd05727 Ig2_Contactin-2-like S 98.6 1.3E-07 2.9E-12 86.2 7.2 74 377-458 11-86 (96)
194 PF13895 Ig_2: Immunoglobulin 98.6 4.8E-07 1E-11 78.5 10.5 78 370-466 2-80 (80)
195 cd05736 Ig2_Follistatin_like S 98.6 5.3E-08 1.2E-12 84.7 4.4 59 309-367 1-60 (76)
196 smart00408 IGc2 Immunoglobulin 98.6 1.5E-07 3.2E-12 77.0 6.4 60 305-367 1-60 (63)
197 cd05750 Ig_Pro_neuregulin Immu 98.6 6.9E-08 1.5E-12 83.4 4.6 59 309-367 1-64 (75)
198 cd05845 Ig2_L1-CAM_like Second 98.5 1.9E-07 4.1E-12 85.0 7.1 73 376-457 10-84 (95)
199 cd05753 Ig2_FcgammaR_like Seco 98.5 2.8E-07 6E-12 82.0 7.8 73 378-465 8-82 (83)
200 smart00408 IGc2 Immunoglobulin 98.5 3.1E-07 6.8E-12 75.0 7.2 63 383-456 1-63 (63)
201 cd07690 Ig1_CD4 First immunogl 98.5 4.4E-07 9.6E-12 82.7 8.5 81 379-459 2-92 (94)
202 smart00409 IG Immunoglobulin. 98.5 1.6E-06 3.6E-11 74.9 11.6 83 377-466 2-85 (86)
203 smart00410 IG_like Immunoglobu 98.5 1.6E-06 3.6E-11 74.9 11.6 83 377-466 2-85 (86)
204 cd05742 Ig1_VEGFR_like First i 98.5 1E-07 2.2E-12 84.7 3.9 62 306-367 1-70 (84)
205 PF00047 ig: Immunoglobulin do 98.4 1.8E-07 3.9E-12 78.2 4.2 60 306-365 1-64 (64)
206 cd05753 Ig2_FcgammaR_like Seco 98.4 4.1E-07 8.9E-12 80.9 6.5 61 300-367 8-69 (83)
207 cd05895 Ig_Pro_neuregulin-1 Im 98.4 2.6E-07 5.5E-12 80.4 4.7 59 309-367 1-65 (76)
208 cd05729 Ig2_FGFR_like Second i 98.4 5E-07 1.1E-11 79.6 6.5 67 301-367 4-72 (85)
209 PHA02826 IL-1 receptor-like pr 98.4 1.3E-06 2.9E-11 92.5 10.7 90 377-468 30-134 (227)
210 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 2.2E-07 4.7E-12 82.8 3.9 62 306-367 1-67 (84)
211 cd05717 Ig1_Necl-1-3_like Firs 98.4 6.4E-07 1.4E-11 81.5 6.7 71 298-368 4-84 (95)
212 cd07690 Ig1_CD4 First immunogl 98.4 4.5E-07 9.7E-12 82.6 5.6 67 301-367 2-86 (94)
213 PHA03376 BARF1; Provisional 98.4 2.8E-06 6.1E-11 84.6 11.5 110 300-409 20-164 (221)
214 PF13927 Ig_3: Immunoglobulin 98.4 1.1E-06 2.5E-11 74.9 7.6 74 369-453 1-75 (75)
215 cd05898 Ig5_KIRREL3 Fifth immu 98.4 8.9E-07 1.9E-11 81.2 7.2 76 292-367 2-86 (98)
216 cd05757 Ig2_IL1R_like Second i 98.4 3E-07 6.5E-12 83.5 4.0 64 301-367 5-73 (92)
217 cd05871 Ig_Semaphorin_classIII 98.4 8.2E-07 1.8E-11 80.5 6.5 67 300-367 5-74 (91)
218 cd05897 Ig2_IL1R2_like Second 98.3 1.8E-06 3.9E-11 78.7 7.3 81 378-466 4-93 (95)
219 PF00047 ig: Immunoglobulin do 98.3 1.3E-06 2.9E-11 72.9 5.3 63 384-451 1-64 (64)
220 cd05759 Ig2_KIRREL3-like Secon 98.2 6E-06 1.3E-10 72.9 9.5 78 386-465 1-81 (82)
221 cd05885 Ig2_Necl-4 Second immu 98.2 5.2E-06 1.1E-10 73.1 8.4 75 386-465 1-79 (80)
222 cd05714 Ig_CSPGs_LP Immunoglob 98.2 1.3E-05 2.9E-10 74.4 10.8 86 383-468 1-104 (106)
223 smart00410 IG_like Immunoglobu 98.2 6.5E-06 1.4E-10 71.1 7.9 68 299-367 2-72 (86)
224 smart00409 IG Immunoglobulin. 98.2 6.5E-06 1.4E-10 71.1 7.9 68 299-367 2-72 (86)
225 cd05896 Ig1_IL1RAPL-1_like Fir 98.2 7.5E-06 1.6E-10 75.3 8.5 80 378-466 9-104 (104)
226 PF13895 Ig_2: Immunoglobulin 98.1 2.3E-06 5E-11 74.1 4.5 58 301-367 9-66 (80)
227 cd05881 Ig1_Necl-2 First (N-te 98.1 2.4E-05 5.3E-10 71.3 11.2 73 377-453 5-83 (95)
228 cd05897 Ig2_IL1R2_like Second 98.1 2.7E-06 5.8E-11 77.6 4.8 66 301-367 5-76 (95)
229 cd05881 Ig1_Necl-2 First (N-te 98.1 6.3E-06 1.4E-10 75.2 7.2 73 298-370 4-86 (95)
230 cd05896 Ig1_IL1RAPL-1_like Fir 98.1 6.2E-06 1.4E-10 75.8 6.8 68 300-367 9-91 (104)
231 cd05877 Ig_LP_like Immunoglobu 98.1 3.8E-05 8.3E-10 71.3 11.4 82 383-468 1-104 (106)
232 cd05872 Ig_Sema4B_like Immunog 98.1 1.8E-05 3.9E-10 70.6 8.7 79 377-467 4-83 (85)
233 PF13927 Ig_3: Immunoglobulin 98.1 1.8E-06 3.9E-11 73.6 2.1 63 303-367 12-75 (75)
234 cd05862 Ig1_VEGFR First immuno 98.0 6.5E-06 1.4E-10 73.7 4.9 62 306-367 1-71 (86)
235 cd05885 Ig2_Necl-4 Second immu 98.0 9.6E-06 2.1E-10 71.5 5.7 60 308-367 1-64 (80)
236 cd05751 Ig1_LILRB1_like First 98.0 7.4E-06 1.6E-10 74.1 5.1 66 300-368 10-75 (91)
237 cd04983 IgV_TCR_alpha_like Imm 98.0 3.2E-05 6.9E-10 72.0 9.5 79 374-455 3-93 (109)
238 cd05713 Ig_MOG_like Immunoglob 98.0 3.6E-05 7.7E-10 70.6 9.7 81 384-466 1-99 (100)
239 cd05900 Ig_Aggrecan Immunoglob 98.0 7E-05 1.5E-09 70.6 11.1 84 383-468 1-110 (112)
240 cd05872 Ig_Sema4B_like Immunog 97.9 1.4E-05 3E-10 71.4 5.7 65 299-367 4-68 (85)
241 cd04983 IgV_TCR_alpha_like Imm 97.9 1.6E-05 3.4E-10 74.0 5.9 71 297-367 4-91 (109)
242 cd05774 Ig_CEACAM_D1 First imm 97.9 5.5E-05 1.2E-09 70.4 9.4 85 374-466 3-105 (105)
243 cd05751 Ig1_LILRB1_like First 97.9 4E-05 8.7E-10 69.3 8.1 74 369-454 2-75 (91)
244 cd05878 Ig_Aggrecan_like Immun 97.9 9.1E-05 2E-09 69.6 10.8 84 383-468 1-108 (110)
245 cd05860 Ig4_SCFR Fourth immuno 97.9 2.4E-05 5.2E-10 71.7 6.4 69 299-367 11-86 (101)
246 cd05899 IgV_TCR_beta Immunoglo 97.9 5.5E-05 1.2E-09 70.8 9.1 77 374-455 3-95 (110)
247 cd05880 Ig_EVA1 Immunoglobulin 97.9 0.0001 2.2E-09 69.8 10.7 89 376-465 5-114 (115)
248 cd05741 Ig_CEACAM_D1_like Firs 97.9 7E-05 1.5E-09 67.3 8.9 77 384-466 1-92 (92)
249 cd05899 IgV_TCR_beta Immunoglo 97.9 2.2E-05 4.8E-10 73.4 5.7 70 297-367 4-93 (110)
250 cd00098 IgC Immunoglobulin Con 97.8 4E-05 8.7E-10 69.3 7.0 75 382-457 11-87 (95)
251 cd05774 Ig_CEACAM_D1 First imm 97.8 3.2E-05 7E-10 72.0 6.4 68 300-367 7-91 (105)
252 cd05879 Ig_P0 Immunoglobulin ( 97.8 0.00019 4.2E-09 68.0 11.7 88 376-466 5-116 (116)
253 cd05718 Ig1_PVR_like First imm 97.8 0.00013 2.9E-09 66.3 10.2 80 385-466 1-97 (98)
254 cd05902 Ig_Neurocan Immunoglob 97.8 0.00015 3.2E-09 68.1 10.0 84 383-468 1-108 (110)
255 cd00099 IgV Immunoglobulin var 97.8 2.8E-05 6.1E-10 71.6 4.7 69 302-370 2-91 (105)
256 PF07686 V-set: Immunoglobulin 97.8 0.00028 6E-09 65.3 11.4 91 373-466 5-114 (114)
257 cd05879 Ig_P0 Immunoglobulin ( 97.7 6E-05 1.3E-09 71.5 6.8 73 297-369 4-103 (116)
258 cd05761 Ig2_Necl-1-4_like Seco 97.7 0.00016 3.5E-09 64.0 9.1 68 387-457 2-70 (82)
259 cd05741 Ig_CEACAM_D1_like Firs 97.7 4.5E-05 9.8E-10 68.6 5.6 62 306-367 1-78 (92)
260 cd05775 Ig_SLAM-CD84_like_N N- 97.7 0.00011 2.3E-09 67.4 8.1 80 382-466 2-96 (97)
261 cd05880 Ig_EVA1 Immunoglobulin 97.7 6.8E-05 1.5E-09 71.0 6.6 71 297-367 4-100 (115)
262 cd05759 Ig2_KIRREL3-like Secon 97.7 5.7E-05 1.2E-09 66.7 5.7 59 308-367 1-67 (82)
263 cd05715 Ig_P0-like Immunoglobu 97.7 0.00034 7.3E-09 66.2 11.2 91 375-466 4-116 (116)
264 cd04980 IgV_L_kappa Immunoglob 97.7 0.00013 2.7E-09 67.9 7.8 78 372-454 3-93 (106)
265 cd04980 IgV_L_kappa Immunoglob 97.7 8.8E-05 1.9E-09 68.9 6.6 71 297-367 6-92 (106)
266 cd00099 IgV Immunoglobulin var 97.7 0.00014 3.1E-09 66.8 8.0 74 380-456 2-91 (105)
267 KOG3515|consensus 97.7 0.00015 3.2E-09 87.2 9.9 234 260-507 71-337 (741)
268 cd05715 Ig_P0-like Immunoglobu 97.6 0.00012 2.7E-09 69.2 6.7 72 296-367 3-101 (116)
269 cd05711 Ig_FcalphaRI Immunoglo 97.6 0.00016 3.4E-09 65.9 6.6 71 295-366 4-75 (94)
270 cd05901 Ig_Versican Immunoglob 97.6 0.00093 2E-08 63.2 11.9 38 431-468 78-115 (117)
271 cd05883 Ig2_Necl-2 Second immu 97.6 0.00045 9.7E-09 61.2 9.1 77 387-467 2-80 (82)
272 cd05716 Ig_pIgR Immunoglobulin 97.6 0.00035 7.6E-09 63.8 8.9 74 379-455 2-87 (98)
273 cd04982 IgV_TCR_gamma Immunogl 97.6 0.00025 5.3E-09 66.9 8.1 76 375-453 4-98 (116)
274 cd04982 IgV_TCR_gamma Immunogl 97.5 0.00012 2.6E-09 69.1 5.6 70 298-367 5-98 (116)
275 cd05888 Ig1_Nectin-4_like Frst 97.5 0.00055 1.2E-08 63.1 9.9 78 386-466 2-99 (100)
276 cd07705 Ig2_Necl-1 Second immu 97.5 0.00067 1.5E-08 60.3 9.7 68 387-457 2-71 (83)
277 cd05886 Ig1_Nectin-1_like Firs 97.5 0.00078 1.7E-08 62.1 10.0 35 432-466 63-98 (99)
278 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.00066 1.4E-08 61.8 9.0 74 370-452 2-75 (94)
279 PF08205 C2-set_2: CD80-like C 97.5 0.0017 3.7E-08 58.1 11.6 73 384-458 14-87 (89)
280 KOG4729|consensus 97.4 0.00011 2.4E-09 76.9 4.2 118 543-662 121-242 (265)
281 cd05775 Ig_SLAM-CD84_like_N N- 97.4 0.00012 2.5E-09 67.1 3.5 64 304-367 2-82 (97)
282 cd04984 IgV_L_lambda Immunoglo 97.4 0.00023 5E-09 65.1 5.4 66 302-367 2-84 (98)
283 PHA02987 Ig domain OX-2-like p 97.4 0.001 2.2E-08 67.2 10.2 90 377-470 23-125 (189)
284 cd05846 Ig1_MRC-OX-2_like Firs 97.4 0.0011 2.3E-08 60.7 9.5 79 384-466 1-96 (97)
285 cd07694 Ig2_CD4 Second immunog 97.4 0.0014 3.1E-08 58.3 9.7 78 378-468 8-87 (88)
286 PHA02987 Ig domain OX-2-like p 97.4 0.00035 7.7E-09 70.4 6.5 69 299-367 23-106 (189)
287 cd04984 IgV_L_lambda Immunoglo 97.4 0.00061 1.3E-08 62.3 7.6 70 380-454 2-85 (98)
288 cd00096 Ig Immunoglobulin doma 97.4 0.0009 1.9E-08 54.4 8.0 66 387-455 1-66 (74)
289 cd07706 IgV_TCR_delta Immunogl 97.3 0.00092 2E-08 63.1 8.9 78 373-453 3-93 (116)
290 cd05887 Ig1_Nectin-3_like Firs 97.3 0.0016 3.4E-08 59.7 10.0 78 385-466 1-95 (96)
291 cd05884 Ig2_Necl-3 Second immu 97.3 0.001 2.2E-08 59.2 8.4 68 387-456 2-70 (83)
292 cd05714 Ig_CSPGs_LP Immunoglob 97.3 0.00022 4.7E-09 66.2 4.1 63 305-367 1-89 (106)
293 cd05716 Ig_pIgR Immunoglobulin 97.3 0.00047 1E-08 63.0 6.1 67 301-367 2-85 (98)
294 cd05755 Ig2_ICAM-1_like Second 97.3 0.0013 2.9E-08 60.5 8.8 82 371-458 3-88 (100)
295 cd05900 Ig_Aggrecan Immunoglob 97.3 0.00044 9.6E-09 65.1 5.9 63 305-367 1-95 (112)
296 PF07686 V-set: Immunoglobulin 97.2 0.00033 7.1E-09 64.8 4.4 70 298-367 8-100 (114)
297 cd05877 Ig_LP_like Immunoglobu 97.2 0.0004 8.6E-09 64.4 4.5 63 305-367 1-89 (106)
298 cd05713 Ig_MOG_like Immunoglob 97.2 0.00053 1.2E-08 62.8 5.2 62 306-367 1-86 (100)
299 cd07700 IgV_CD8_beta Immunoglo 97.2 0.0016 3.5E-08 60.6 8.4 71 380-453 2-93 (107)
300 cd05718 Ig1_PVR_like First imm 97.2 0.00046 9.9E-09 62.8 4.5 61 307-367 1-83 (98)
301 smart00407 IGc1 Immunoglobulin 97.2 0.0021 4.4E-08 55.9 8.3 69 386-455 1-71 (75)
302 cd07698 IgC_MHC_I_alpha3 Class 97.2 0.0026 5.6E-08 57.7 9.3 81 369-456 2-84 (93)
303 cd07706 IgV_TCR_delta Immunogl 97.1 0.00064 1.4E-08 64.2 5.0 71 297-367 5-93 (116)
304 cd05755 Ig2_ICAM-1_like Second 97.1 0.00083 1.8E-08 61.8 5.4 66 301-367 11-83 (100)
305 cd07700 IgV_CD8_beta Immunoglo 97.1 0.00075 1.6E-08 62.9 5.2 66 302-367 2-93 (107)
306 cd07694 Ig2_CD4 Second immunog 97.1 0.0017 3.7E-08 57.8 6.9 62 300-366 8-71 (88)
307 cd05846 Ig1_MRC-OX-2_like Firs 97.1 0.00078 1.7E-08 61.6 5.0 62 306-367 1-82 (97)
308 cd05712 Ig_Siglec_N Immunoglob 97.0 0.0011 2.4E-08 63.0 5.8 72 296-367 4-101 (119)
309 cd05883 Ig2_Necl-2 Second immu 97.0 0.00083 1.8E-08 59.5 4.5 59 309-367 2-65 (82)
310 cd05712 Ig_Siglec_N Immunoglob 97.0 0.0043 9.3E-08 59.0 9.4 77 375-454 5-102 (119)
311 cd00098 IgC Immunoglobulin Con 97.0 0.00091 2E-08 60.4 4.5 64 304-367 11-83 (95)
312 cd00096 Ig Immunoglobulin doma 96.9 0.0011 2.4E-08 53.9 4.3 59 309-367 1-64 (74)
313 cd05720 Ig_CD8_alpha Immunoglo 96.9 0.0033 7.2E-08 58.3 7.7 69 380-453 2-90 (104)
314 cd05878 Ig_Aggrecan_like Immun 96.9 0.0013 2.7E-08 61.9 4.6 63 305-367 1-93 (110)
315 cd05889 Ig1_DNAM-1_like First 96.8 0.01 2.3E-07 54.3 10.4 77 385-465 1-94 (96)
316 cd05769 IgC_TCR_beta T cell re 96.8 0.0051 1.1E-07 58.2 8.3 91 369-459 2-96 (115)
317 cd05720 Ig_CD8_alpha Immunoglo 96.8 0.0017 3.7E-08 60.3 4.7 66 302-367 2-90 (104)
318 cd07699 IgC_L Immunoglobulin C 96.8 0.0034 7.5E-08 57.9 6.7 85 370-455 2-89 (100)
319 cd07696 IgC_CH3 CH3 domain (th 96.7 0.0051 1.1E-07 56.3 7.5 79 375-455 5-86 (96)
320 cd05719 Ig2_PVR_like Second im 96.7 0.011 2.3E-07 54.1 9.3 75 385-464 16-93 (95)
321 cd07705 Ig2_Necl-1 Second immu 96.7 0.0029 6.2E-08 56.3 5.4 58 309-367 2-67 (83)
322 cd04981 IgV_H Immunoglobulin ( 96.7 0.0028 6.1E-08 60.1 5.6 71 297-367 3-97 (117)
323 cd05847 IgC_CH2_IgE CH2 domain 96.7 0.0073 1.6E-07 55.1 7.9 76 382-458 12-89 (94)
324 cd05761 Ig2_Necl-1-4_like Seco 96.7 0.0028 6E-08 56.1 5.0 58 309-367 2-66 (82)
325 cd05772 IgC_SIRP Signal-regula 96.6 0.014 3E-07 55.0 9.8 74 379-456 16-93 (111)
326 cd05884 Ig2_Necl-3 Second immu 96.6 0.0035 7.5E-08 55.8 5.2 59 309-367 2-67 (83)
327 cd05767 IgC_MHC_II_alpha Class 96.6 0.025 5.5E-07 51.5 11.0 70 382-455 13-84 (94)
328 PHA03376 BARF1; Provisional 96.6 0.018 3.9E-07 58.1 10.5 79 378-456 20-111 (221)
329 cd05888 Ig1_Nectin-4_like Frst 96.6 0.0028 6E-08 58.4 4.6 61 308-368 2-86 (100)
330 cd04981 IgV_H Immunoglobulin ( 96.5 0.012 2.5E-07 56.0 8.7 76 375-453 3-97 (117)
331 cd05768 IgC_CH4 CH4 domain (fo 96.5 0.0053 1.1E-07 56.9 6.2 81 375-455 7-91 (102)
332 cd05889 Ig1_DNAM-1_like First 96.5 0.0039 8.4E-08 57.1 5.0 63 307-369 1-83 (96)
333 cd05770 IgC_beta2m Class I maj 96.5 0.027 5.8E-07 51.3 10.3 70 381-455 12-83 (93)
334 PF07654 C1-set: Immunoglobuli 96.4 0.014 3.1E-07 51.5 8.2 70 383-456 7-78 (83)
335 cd05901 Ig_Versican Immunoglob 96.4 0.0047 1E-07 58.5 5.2 24 344-367 77-100 (117)
336 cd05887 Ig1_Nectin-3_like Firs 96.4 0.0047 1E-07 56.5 5.0 62 307-368 1-82 (96)
337 cd05771 IgC_Tapasin_R Tapasin- 96.4 0.0032 7E-08 61.4 4.0 40 433-472 2-41 (139)
338 cd05902 Ig_Neurocan Immunoglob 96.3 0.0034 7.4E-08 59.0 3.7 62 306-367 2-93 (110)
339 cd05766 IgC_MHC_II_beta Class 96.3 0.035 7.7E-07 50.6 10.2 72 381-456 11-84 (94)
340 KOG1480|consensus 96.3 0.0031 6.6E-08 74.8 3.8 165 294-468 27-222 (909)
341 smart00406 IGv Immunoglobulin 96.3 0.015 3.2E-07 50.2 7.2 63 386-451 1-81 (81)
342 cd05772 IgC_SIRP Signal-regula 96.2 0.014 3E-07 54.9 7.4 33 301-333 16-50 (111)
343 cd07703 Ig2_Nectin-2_like Seco 96.2 0.028 6.1E-07 51.3 9.0 75 385-464 16-91 (95)
344 cd05886 Ig1_Nectin-1_like Firs 96.2 0.0085 1.8E-07 55.2 5.6 61 308-368 2-85 (99)
345 cd04985 IgC_CH1 CH1 domain (fi 96.0 0.039 8.4E-07 50.4 9.0 71 383-455 15-87 (95)
346 PF08205 C2-set_2: CD80-like C 95.9 0.0073 1.6E-07 53.9 3.8 29 304-332 12-41 (89)
347 KOG1924|consensus 95.7 0.041 8.9E-07 65.4 9.5 22 596-618 964-986 (1102)
348 smart00406 IGv Immunoglobulin 95.7 0.01 2.2E-07 51.2 3.7 58 308-365 1-81 (81)
349 cd04986 IgC_CH2 CH2 domain (se 95.7 0.033 7.1E-07 51.3 7.0 77 375-455 10-89 (99)
350 cd07692 Ig_CD3_epsilon Immunog 95.5 0.033 7.1E-07 46.9 5.7 51 304-367 5-55 (65)
351 cd07698 IgC_MHC_I_alpha3 Class 95.5 0.027 5.8E-07 51.1 5.7 62 306-367 14-81 (93)
352 cd07692 Ig_CD3_epsilon Immunog 95.4 0.034 7.5E-07 46.7 5.4 52 382-454 5-56 (65)
353 PF05096 Glu_cyclase_2: Glutam 95.4 1.3 2.8E-05 47.9 18.7 190 596-809 57-262 (264)
354 cd07697 IgC_TCR_gamma T cell r 95.3 0.067 1.5E-06 49.0 7.7 72 379-454 11-84 (96)
355 KOG1924|consensus 95.3 0.084 1.8E-06 62.9 10.1 9 34-42 448-456 (1102)
356 smart00407 IGc1 Immunoglobulin 95.3 0.021 4.5E-07 49.6 4.1 60 308-367 1-69 (75)
357 cd05766 IgC_MHC_II_beta Class 95.2 0.037 8E-07 50.4 5.7 29 304-332 12-42 (94)
358 PHA02633 hypothetical protein; 95.1 0.047 1E-06 45.2 5.2 37 434-470 20-56 (63)
359 cd07696 IgC_CH3 CH3 domain (th 94.9 0.031 6.6E-07 51.2 4.1 65 303-367 11-84 (96)
360 cd07699 IgC_L Immunoglobulin C 94.9 0.024 5.3E-07 52.2 3.4 30 303-332 14-45 (100)
361 cd07704 Ig2_Nectin-3-4_like Se 94.7 0.22 4.8E-06 45.7 9.3 74 378-456 10-85 (97)
362 cd05770 IgC_beta2m Class I maj 94.6 0.058 1.3E-06 49.1 5.2 29 304-332 13-43 (93)
363 cd05847 IgC_CH2_IgE CH2 domain 94.2 0.047 1E-06 49.8 3.6 28 305-332 13-42 (94)
364 KOG3545|consensus 94.2 0.28 6E-06 52.1 9.6 179 687-871 24-249 (249)
365 cd05721 IgV_CTLA-4 Immunoglobu 94.1 0.26 5.6E-06 46.5 8.3 74 375-451 4-93 (115)
366 cd05767 IgC_MHC_II_alpha Class 93.8 0.12 2.5E-06 47.2 5.4 28 305-332 14-43 (94)
367 cd07697 IgC_TCR_gamma T cell r 93.7 0.083 1.8E-06 48.4 4.3 30 303-332 13-44 (96)
368 KOG4597|consensus 93.7 0.076 1.7E-06 60.2 4.7 93 371-468 198-293 (560)
369 PF02191 OLF: Olfactomedin-lik 93.3 1 2.2E-05 48.6 12.6 112 690-806 27-154 (250)
370 PHA03270 envelope glycoprotein 93.2 9.4 0.0002 43.6 19.8 103 347-452 183-305 (466)
371 cd05721 IgV_CTLA-4 Immunoglobu 93.1 0.31 6.8E-06 45.9 7.1 76 297-372 4-101 (115)
372 cd07691 Ig_CD3_gamma_delta Imm 92.8 0.28 6E-06 41.8 5.6 59 384-465 6-64 (69)
373 cd07689 Ig2_VCAM-1 Second immu 92.7 0.26 5.7E-06 45.1 5.9 64 303-367 12-84 (99)
374 PF07654 C1-set: Immunoglobuli 92.7 0.14 3E-06 45.2 4.0 28 305-332 7-36 (83)
375 PF08204 V-set_CD47: CD47 immu 92.6 0.21 4.6E-06 48.1 5.4 85 382-467 25-120 (130)
376 cd07704 Ig2_Nectin-3-4_like Se 92.3 0.35 7.7E-06 44.3 6.2 66 299-367 9-82 (97)
377 cd05768 IgC_CH4 CH4 domain (fo 92.3 0.11 2.4E-06 48.1 2.9 30 303-332 13-44 (102)
378 cd07691 Ig_CD3_gamma_delta Imm 92.1 0.26 5.7E-06 41.9 4.6 49 306-367 6-54 (69)
379 cd07703 Ig2_Nectin-2_like Seco 91.4 0.32 7E-06 44.4 4.9 58 307-367 16-80 (95)
380 cd05769 IgC_TCR_beta T cell re 91.0 0.16 3.5E-06 48.1 2.7 30 303-332 15-46 (115)
381 PF08450 SGL: SMP-30/Gluconola 90.6 6.1 0.00013 42.1 14.8 145 641-808 11-164 (246)
382 smart00284 OLF Olfactomedin-li 90.6 1.9 4.1E-05 46.6 10.5 76 727-806 70-159 (255)
383 cd05719 Ig2_PVR_like Second im 90.4 0.47 1E-05 43.3 5.0 58 307-367 16-80 (95)
384 PHA02982 hypothetical protein; 90.0 1.2 2.6E-05 45.8 7.9 108 300-407 33-171 (251)
385 PF07354 Sp38: Zona-pellucida- 89.2 0.43 9.3E-06 50.9 4.2 48 319-367 11-58 (271)
386 PHA03269 envelope glycoprotein 88.9 2.1 4.7E-05 49.2 9.7 103 347-452 290-414 (566)
387 KOG1480|consensus 88.8 0.18 4E-06 60.4 1.3 68 298-367 136-204 (909)
388 PF08204 V-set_CD47: CD47 immu 88.7 0.3 6.5E-06 47.1 2.5 64 303-367 24-106 (130)
389 PF07734 FBA_1: F-box associat 88.6 17 0.00037 36.4 15.4 80 638-724 2-88 (164)
390 PHA03273 envelope glycoprotein 88.3 2.9 6.2E-05 48.0 10.2 104 347-452 199-322 (486)
391 PHA02633 hypothetical protein; 88.3 0.4 8.8E-06 39.8 2.6 24 344-367 16-39 (63)
392 PHA02914 Immunoglobulin-like d 88.2 6.6 0.00014 44.3 12.6 83 378-460 273-374 (500)
393 cd04985 IgC_CH1 CH1 domain (fi 88.2 0.78 1.7E-05 41.9 4.8 27 305-331 15-43 (95)
394 cd04986 IgC_CH2 CH2 domain (se 88.2 0.93 2E-05 41.8 5.3 29 303-331 16-47 (99)
395 PLN02153 epithiospecifier prot 87.2 18 0.0004 40.6 16.2 153 629-795 125-320 (341)
396 cd07689 Ig2_VCAM-1 Second immu 87.1 2.2 4.7E-05 39.2 6.9 72 381-456 12-87 (99)
397 PHA03270 envelope glycoprotein 86.9 6.5 0.00014 44.9 11.8 107 301-410 229-361 (466)
398 PHA03269 envelope glycoprotein 86.1 9.3 0.0002 44.2 12.6 143 302-453 338-512 (566)
399 PF07354 Sp38: Zona-pellucida- 85.6 1 2.2E-05 48.2 4.5 50 397-455 11-60 (271)
400 PHA03042 CD47-like protein; Pr 85.4 3.4 7.4E-05 44.4 8.3 71 383-467 30-105 (286)
401 PHA02982 hypothetical protein; 85.3 2.1 4.6E-05 44.1 6.4 76 378-458 33-126 (251)
402 PF11465 Receptor_2B4: Natural 85.1 6.8 0.00015 36.4 9.0 35 433-467 72-107 (108)
403 KOG0613|consensus 84.9 1.8 4E-05 55.2 7.0 88 378-470 343-431 (1205)
404 PHA03271 envelope glycoprotein 84.8 7 0.00015 44.3 10.7 105 347-453 208-333 (490)
405 PHA02914 Immunoglobulin-like d 83.9 31 0.00067 39.2 15.0 159 300-458 273-470 (500)
406 PHA03098 kelch-like protein; P 83.7 51 0.0011 39.5 18.6 151 627-796 328-494 (534)
407 PF10282 Lactonase: Lactonase, 83.6 54 0.0012 37.0 17.8 164 593-769 154-331 (345)
408 PHA03271 envelope glycoprotein 82.1 18 0.00039 41.2 12.4 106 302-410 256-387 (490)
409 PF05790 C2-set: Immunoglobuli 81.1 17 0.00037 32.1 9.7 33 434-466 45-78 (80)
410 PF08450 SGL: SMP-30/Gluconola 81.1 47 0.001 35.2 15.4 164 626-806 37-213 (246)
411 PHA03273 envelope glycoprotein 80.2 19 0.00041 41.6 12.1 105 301-408 245-377 (486)
412 TIGR03866 PQQ_ABC_repeats PQQ- 79.4 90 0.002 33.1 19.0 144 641-807 125-280 (300)
413 TIGR03548 mutarot_permut cycli 78.8 44 0.00096 37.2 14.8 154 627-797 109-311 (323)
414 KOG1984|consensus 78.2 53 0.0012 40.9 15.5 29 731-759 712-740 (1007)
415 KOG4597|consensus 77.3 3.2 6.9E-05 47.6 4.9 68 300-367 205-278 (560)
416 PF01484 Col_cuticle_N: Nemato 76.5 0.062 1.3E-06 43.3 -6.6 52 36-88 1-53 (53)
417 PF03921 ICAM_N: Intercellular 76.0 50 0.0011 30.0 11.3 84 371-470 5-89 (91)
418 PHA02865 MHC-like TNF binding 75.8 9.6 0.00021 42.7 8.0 66 386-454 216-303 (338)
419 PHA02790 Kelch-like protein; P 74.9 43 0.00092 39.8 13.9 144 627-796 304-453 (480)
420 PLN02193 nitrile-specifier pro 74.7 1.4E+02 0.003 35.4 18.1 149 633-797 220-385 (470)
421 PF04053 Coatomer_WDAD: Coatom 74.2 85 0.0018 37.0 15.8 150 623-809 102-265 (443)
422 PF13360 PQQ_2: PQQ-like domai 74.0 59 0.0013 33.8 13.4 117 637-767 118-235 (238)
423 PHA03042 CD47-like protein; Pr 73.0 5.2 0.00011 43.0 4.9 59 303-367 28-91 (286)
424 TIGR03548 mutarot_permut cycli 72.8 1.5E+02 0.0032 33.0 16.9 158 625-796 56-230 (323)
425 TIGR01640 F_box_assoc_1 F-box 72.1 97 0.0021 32.5 14.5 71 637-713 98-174 (230)
426 PHA02713 hypothetical protein; 71.6 48 0.001 40.2 13.4 151 627-796 289-470 (557)
427 KOG0613|consensus 71.5 4.2 9.1E-05 52.1 4.4 148 300-456 343-517 (1205)
428 cd05890 Ig2_Nectin-1_like Seco 70.9 16 0.00035 33.3 6.8 75 386-465 22-97 (98)
429 PF06328 Lep_receptor_Ig: Ig-l 68.4 11 0.00023 34.1 5.3 66 298-364 10-80 (89)
430 PHA03098 kelch-like protein; P 67.9 57 0.0012 39.1 13.1 157 594-768 342-517 (534)
431 KOG1026|consensus 67.5 8.3 0.00018 47.6 5.6 155 300-470 201-366 (774)
432 PF02239 Cytochrom_D1: Cytochr 66.5 87 0.0019 35.9 13.5 71 642-726 48-119 (369)
433 PF13360 PQQ_2: PQQ-like domai 66.4 1.7E+02 0.0036 30.3 20.2 159 624-806 60-230 (238)
434 TIGR02800 propeller_TolB tol-p 65.6 2E+02 0.0042 32.9 16.5 128 650-797 212-341 (417)
435 KOG1984|consensus 64.2 1.4E+02 0.0031 37.5 14.7 13 789-801 890-902 (1007)
436 PRK14751 tetracycline resistan 64.1 4.8 0.0001 27.2 1.5 16 782-797 7-22 (28)
437 PF06977 SdiA-regulated: SdiA- 62.5 2.3E+02 0.005 30.6 16.7 152 637-802 26-195 (248)
438 KOG1026|consensus 62.4 3.4 7.4E-05 50.8 1.1 154 300-470 61-276 (774)
439 PRK04792 tolB translocation pr 62.1 2.4E+02 0.0053 33.1 16.5 128 650-797 240-369 (448)
440 PHA02865 MHC-like TNF binding 62.0 17 0.00036 40.8 6.3 21 308-328 216-238 (338)
441 PRK04922 tolB translocation pr 59.5 2.8E+02 0.0061 32.2 16.4 126 651-796 227-354 (433)
442 PHA02713 hypothetical protein; 59.4 54 0.0012 39.8 10.7 157 594-769 351-540 (557)
443 PRK14131 N-acetylneuraminic ac 56.9 2E+02 0.0044 32.8 14.4 128 651-796 188-350 (376)
444 TIGR02658 TTQ_MADH_Hv methylam 56.7 3.5E+02 0.0076 30.9 20.8 132 650-804 75-221 (352)
445 PRK05137 tolB translocation pr 56.5 3.2E+02 0.007 31.7 16.3 128 650-796 224-352 (435)
446 TIGR03300 assembly_YfgL outer 56.1 3.3E+02 0.0071 30.8 15.9 136 638-802 238-375 (377)
447 PLN02919 haloacid dehalogenase 55.6 4.1E+02 0.0088 35.1 18.2 164 636-805 572-769 (1057)
448 PRK00178 tolB translocation pr 55.4 3.4E+02 0.0073 31.4 16.2 126 651-796 222-349 (430)
449 PF13970 DUF4221: Domain of un 55.0 1.7E+02 0.0037 32.8 13.2 203 651-872 66-302 (333)
450 PRK11138 outer membrane biogen 54.7 3.8E+02 0.0082 30.7 16.2 145 637-806 156-312 (394)
451 PRK04792 tolB translocation pr 52.9 3.5E+02 0.0076 31.8 15.8 136 649-806 283-423 (448)
452 PRK11138 outer membrane biogen 52.7 4E+02 0.0086 30.5 16.0 137 637-803 252-391 (394)
453 COG4257 Vgb Streptogramin lyas 52.4 42 0.00091 36.6 7.0 91 641-747 72-166 (353)
454 TIGR03547 muta_rot_YjhT mutatr 51.6 3.1E+02 0.0067 30.7 14.6 127 652-796 168-328 (346)
455 cd08985 GH43_6 Glycosyl hydrol 50.7 3.6E+02 0.0077 29.2 21.0 74 685-758 121-200 (265)
456 PF05790 C2-set: Immunoglobuli 50.0 60 0.0013 28.7 6.6 38 320-366 26-63 (80)
457 PLN02919 haloacid dehalogenase 49.8 2E+02 0.0043 37.9 14.1 128 643-776 753-903 (1057)
458 PHA03240 envelope glycoprotein 49.6 25 0.00055 36.4 4.7 62 301-362 33-121 (258)
459 cd09000 GH43_XYL_1 Glycosyl hy 49.1 3.6E+02 0.0077 29.4 14.2 63 686-748 119-195 (288)
460 PF06328 Lep_receptor_Ig: Ig-l 48.3 72 0.0016 28.8 7.0 67 376-451 10-81 (89)
461 PF10282 Lactonase: Lactonase, 47.7 4.5E+02 0.0098 29.5 20.2 152 642-806 156-322 (345)
462 COG3391 Uncharacterized conser 47.0 4.1E+02 0.0088 30.5 14.8 149 632-799 74-228 (381)
463 PF02480 Herpes_gE: Alphaherpe 47.0 94 0.002 36.5 9.5 24 344-367 87-110 (439)
464 PF08268 FBA_3: F-box associat 46.7 54 0.0012 31.3 6.4 33 638-671 2-38 (129)
465 PF08268 FBA_3: F-box associat 46.5 60 0.0013 30.9 6.7 67 739-808 5-76 (129)
466 PF08076 TetM_leader: Tetracyc 46.3 11 0.00024 25.7 1.0 14 783-796 8-21 (28)
467 COG4590 ABC-type uncharacteriz 46.0 1.2E+02 0.0026 35.3 9.6 137 641-807 231-387 (733)
468 cd00200 WD40 WD40 domain, foun 45.8 3.4E+02 0.0073 27.5 16.2 140 644-806 107-249 (289)
469 PLN02153 epithiospecifier prot 44.6 4.9E+02 0.011 29.1 17.5 152 634-797 78-259 (341)
470 TIGR03866 PQQ_ABC_repeats PQQ- 44.6 4E+02 0.0087 28.0 20.2 141 644-807 45-188 (300)
471 PRK03629 tolB translocation pr 43.8 3.8E+02 0.0082 31.3 14.1 133 643-796 256-392 (429)
472 COG3823 Glutamine cyclotransfe 42.7 4.4E+02 0.0095 28.0 12.9 175 616-809 74-260 (262)
473 TIGR00864 PCC polycystin catio 41.8 5.3E+02 0.012 37.2 16.3 136 302-469 1796-1951(2740)
474 COG3386 Gluconolactonase [Carb 40.7 3.2E+02 0.007 30.5 12.2 64 740-809 122-194 (307)
475 cd08981 GH43_2 Glycosyl hydrol 40.3 2.4E+02 0.0052 31.1 11.1 77 685-761 122-228 (291)
476 PHA03189 UL14 tegument protein 40.1 1.6E+02 0.0034 32.6 9.0 23 433-456 135-157 (348)
477 PF11465 Receptor_2B4: Natural 39.3 23 0.00051 33.0 2.4 25 343-367 68-92 (108)
478 PHA03189 UL14 tegument protein 37.5 74 0.0016 35.0 6.1 27 297-323 58-86 (348)
479 PF02124 Marek_A: Marek's dise 37.2 3.9E+02 0.0084 28.2 11.2 24 387-410 92-117 (211)
480 KOG0278|consensus 36.4 5.3E+02 0.012 28.0 12.0 85 709-807 207-298 (334)
481 PLN02193 nitrile-specifier pro 36.3 7.9E+02 0.017 29.0 18.2 131 629-770 266-418 (470)
482 TIGR03547 muta_rot_YjhT mutatr 36.1 6.5E+02 0.014 28.0 15.3 44 622-665 43-98 (346)
483 PHA03052 Hypothetical protein; 35.8 48 0.001 28.3 3.5 33 299-331 5-40 (69)
484 PHA03052 Hypothetical protein; 35.3 1.1E+02 0.0024 26.2 5.5 35 377-411 5-42 (69)
485 PRK02889 tolB translocation pr 35.1 7.7E+02 0.017 28.6 16.9 126 651-796 219-346 (427)
486 PHA02790 Kelch-like protein; P 34.7 7.4E+02 0.016 29.4 14.8 130 594-747 318-454 (480)
487 KOG0200|consensus 34.3 1.5E+02 0.0033 36.3 9.2 118 344-465 11-150 (609)
488 KOG0319|consensus 34.2 3.6E+02 0.0079 33.3 11.6 148 641-807 30-180 (775)
489 KOG0292|consensus 33.2 92 0.002 39.0 6.6 35 634-670 324-358 (1202)
490 PF06832 BiPBP_C: Penicillin-B 32.9 3.5E+02 0.0075 23.9 9.1 56 386-460 31-86 (89)
491 TIGR03032 conserved hypothetic 31.6 2.6E+02 0.0056 31.4 9.2 34 639-672 210-243 (335)
492 cd09001 GH43_XYL_2 Glycosyl hy 30.8 6.9E+02 0.015 27.0 12.7 62 686-749 122-191 (269)
493 KOG0276|consensus 30.7 2.4E+02 0.0052 34.2 9.2 172 616-811 413-592 (794)
494 KOG4441|consensus 30.3 1.1E+03 0.023 28.8 15.9 160 620-797 311-483 (571)
495 PRK01742 tolB translocation pr 28.9 9.6E+02 0.021 27.8 16.7 132 651-805 227-360 (429)
496 PF02440 Adeno_E3_CR1: Adenovi 28.9 1.6E+02 0.0034 25.0 5.4 53 303-359 2-63 (63)
497 PF13964 Kelch_6: Kelch motif 28.7 95 0.0021 24.1 4.1 34 633-666 3-42 (50)
498 cd00216 PQQ_DH Dehydrogenases 28.7 6.2E+02 0.013 30.0 12.8 120 637-767 57-188 (488)
499 TIGR03074 PQQ_membr_DH membran 28.7 1.3E+03 0.028 29.3 17.3 154 638-794 191-391 (764)
500 PF05096 Glu_cyclase_2: Glutam 27.8 1.3E+02 0.0028 32.8 6.2 76 593-671 138-214 (264)
No 1
>smart00284 OLF Olfactomedin-like domains.
Probab=100.00 E-value=9.3e-79 Score=636.56 Aligned_cols=247 Identities=29% Similarity=0.517 Sum_probs=229.9
Q ss_pred eeeecCCceEeeccCccccCCCcceeeeccceecCCCCCCCCCceEEEecCC--CCCceEeecChhhhcccCCcceEeCc
Q psy12803 552 QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDS--DPTHLNEYKDKDMFKSDAKSWTYNLK 629 (902)
Q Consensus 552 ~l~~v~~Pv~~~~~~~~~~~~~~~~~~~~G~W~~D~~~~~~~~~~~~~~~~~--~~~~~~ey~~~~~~~~~~~~~~~~l~ 629 (902)
.|.+|++|++|+.+. .+++|+|||||.+.+...+++||++++ .+++|+||+++++|++++..++|.||
T Consensus 2 ~L~~V~~P~~~~~~~----------~~~~GaWmkD~~~~~~~~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp 71 (255)
T smart00284 2 GLAGISKPVTLQTSW----------KGKSGAWMKDPLWNTTKKSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLP 71 (255)
T ss_pred CceEecCCeEEEecC----------CCccceeecCCCCCCCCCceEEEEccccCCCcEEEEecCHHHHhccCCceEEECC
Confidence 488999999999876 258999999999855447999999875 68899999999999999999999999
Q ss_pred CCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCC-CCCccccc-CCcccEEEEecCCccEEEEEcC--CC
Q psy12803 630 EPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV-DPNIKLYK-TGYNVMDFSLDENGLWVIYGLS--NN 705 (902)
Q Consensus 630 ~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~-~~~~~~y~-~~~~~iD~avDE~GLWviY~~~--~~ 705 (902)
++|+|||||||||+||||+++|++||||||+++++.+++.|+.+ ..+..+|. +++|||||||||+|||||||++ ++
T Consensus 72 ~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 72 HAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred CccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 99999999999999999999999999999999999999988843 23334554 7999999999999999999996 58
Q ss_pred cEEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeec
Q psy12803 706 NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITY 785 (902)
Q Consensus 706 ~ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Y 785 (902)
+||||||||.||+||+||+|+++|++|+||||||||||||+|...++++|+|||||+|++++.++|+|+|+|++++||+|
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~Y 231 (255)
T smart00284 152 KIVISKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDY 231 (255)
T ss_pred CEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceecee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCeEEEEEeEEe
Q psy12803 786 NSRYKDLYTWDRGNSLTYPIRYH 808 (902)
Q Consensus 786 nP~d~~LY~wd~g~~~~Y~v~f~ 808 (902)
||+||+||+|||||||+|+|+|.
T Consensus 232 NP~d~~LY~wdng~~l~Y~v~f~ 254 (255)
T smart00284 232 NPNDRKLYAWNNGHLVHYDIALK 254 (255)
T ss_pred CCCCCeEEEEeCCeEEEEEEEec
Confidence 99999999999999999999995
No 2
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=100.00 E-value=2e-76 Score=626.67 Aligned_cols=244 Identities=41% Similarity=0.777 Sum_probs=231.7
Q ss_pred eeeecCCceEeeccCccccCCCcceeeeccceecCCCCCCCCCceEEEecCCCCCceEeecChhhh-cccCCcceEeCcC
Q psy12803 552 QVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMF-KSDAKSWTYNLKE 630 (902)
Q Consensus 552 ~l~~v~~Pv~~~~~~~~~~~~~~~~~~~~G~W~~D~~~~~~~~~~~~~~~~~~~~~~~ey~~~~~~-~~~~~~~~~~l~~ 630 (902)
+|.+|++|++++.+. .++|||||||. ..+.+++|++.++.+++|+||+++++| ++++..+.+.||+
T Consensus 1 tl~~I~~P~~~~~~~-----------~~~GaWmrD~~--~~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~ 67 (250)
T PF02191_consen 1 TLASISKPVTVKKSG-----------YKFGAWMRDPS--PSDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPY 67 (250)
T ss_pred CcccCcCCEEEeeec-----------cceeEEEeCCC--CCCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEec
Confidence 478999999999888 89999999998 357889999999999999999999999 8999999999999
Q ss_pred CCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCC--CcccccCCcccEEEEecCCccEEEEEcC--CCc
Q psy12803 631 PFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDP--NIKLYKTGYNVMDFSLDENGLWVIYGLS--NNN 706 (902)
Q Consensus 631 ~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~--~~~~y~~~~~~iD~avDE~GLWviY~~~--~~~ 706 (902)
+|+|||||||||+||||+++|++||||||+++++++++.|+.+.. ..+++.++++||||||||+||||||++. +++
T Consensus 68 ~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 68 PWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred eeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 999999999999999999999999999999999999999985543 3566669999999999999999999997 568
Q ss_pred EEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecC
Q psy12803 707 TAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYN 786 (902)
Q Consensus 707 ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Yn 786 (902)
||||||||++|+||+||+|+++|++|+||||||||||||++.++++++|+|||||++++++.++|+|+|+|+.++||+||
T Consensus 148 ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYN 227 (250)
T ss_pred EEEEeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCeEEEEEeEEe
Q psy12803 787 SRYKDLYTWDRGNSLTYPIRYH 808 (902)
Q Consensus 787 P~d~~LY~wd~g~~~~Y~v~f~ 808 (902)
|+||+||+|||||||+|+|+|+
T Consensus 228 P~dk~LY~wd~G~~v~Y~v~f~ 249 (250)
T PF02191_consen 228 PRDKKLYAWDNGYQVTYDVRFK 249 (250)
T ss_pred CCCCeEEEEECCeEEEEEEEec
Confidence 9999999999999999999996
No 3
>KOG3545|consensus
Probab=100.00 E-value=1e-74 Score=592.03 Aligned_cols=245 Identities=38% Similarity=0.710 Sum_probs=233.2
Q ss_pred ceeeecCCceEeeccCccccCCCcceeeeccceecCCCCCCCCCceEEEecCCCCCceEeecChhhhcccCCcceEeCcC
Q psy12803 551 CQVYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKE 630 (902)
Q Consensus 551 C~l~~v~~Pv~~~~~~~~~~~~~~~~~~~~G~W~~D~~~~~~~~~~~~~~~~~~~~~~~ey~~~~~~~~~~~~~~~~l~~ 630 (902)
|.+.+|++|+.++... ..+|+|||||.+ ..+++|++.+++++.|.||+++++|+++++.++|+||+
T Consensus 1 ~~l~~v~~p~~~~~~~-----------~~~GsWmrDpl~---~~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~ 66 (249)
T KOG3545|consen 1 GKLYAVGGPVTVKTAG-----------PRFGAWMRDPLP---ADDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRLPY 66 (249)
T ss_pred CeeEEeccceEEEeec-----------cccceeecCCCc---ccCceEEeccccCceEEEeccHHHhhccCcceEEeCCC
Confidence 5688999999999888 889999999997 58899999999999999999999999999999999999
Q ss_pred CCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCC--CCCcccccCCcccEEEEecCCccEEEEEcC--CCc
Q psy12803 631 PFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTV--DPNIKLYKTGYNVMDFSLDENGLWVIYGLS--NNN 706 (902)
Q Consensus 631 ~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~--~~~~~~y~~~~~~iD~avDE~GLWviY~~~--~~~ 706 (902)
.|.||||||||||||||+++|+.||||||+++.+..+..+|.+ .+.+++|+++++||||||||+|||||||+. +++
T Consensus 67 ~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~ 146 (249)
T KOG3545|consen 67 SWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT 146 (249)
T ss_pred CccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc
Confidence 9999999999999999999999999999999999999989844 344567779999999999999999999997 678
Q ss_pred EEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecC
Q psy12803 707 TAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYN 786 (902)
Q Consensus 707 ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Yn 786 (902)
||||||||.+|++|++|+|+++|++++||||||||||+|+|.+..++.|+|||||++++++.++|+|+|+|++++||+||
T Consensus 147 iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYN 226 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNTTLPKRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYN 226 (249)
T ss_pred EEeeccCHHHhheeeeeccccCCCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCeEEEEEeEEee
Q psy12803 787 SRYKDLYTWDRGNSLTYPIRYHE 809 (902)
Q Consensus 787 P~d~~LY~wd~g~~~~Y~v~f~~ 809 (902)
|+|++||+|||||||+|+|+|.+
T Consensus 227 P~D~~LY~wdng~~l~y~l~~~~ 249 (249)
T KOG3545|consen 227 PRDRRLYAWDNGHQLTYNLTFFE 249 (249)
T ss_pred cccceeeEecCCcEEEEEeEecC
Confidence 99999999999999999999963
No 4
>KOG3513|consensus
Probab=99.86 E-value=1e-21 Score=235.57 Aligned_cols=196 Identities=24% Similarity=0.373 Sum_probs=160.1
Q ss_pred ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee
Q psy12803 263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA 342 (902)
Q Consensus 263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~ 342 (902)
-.|.+.|..+... ....+.+..+|.+.. .++++++..|++++|.|.|.|.|.|+|+|+|++..+..........
T Consensus 309 Y~C~AeN~~G~~~-~~~~v~v~a~P~w~~-----~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~ 382 (1051)
T KOG3513|consen 309 YECIAENSRGSAT-HSGHVTVYAPPYWLQ-----KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYK 382 (1051)
T ss_pred EEEEEecccccce-eeEEEEEecCchhhc-----ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceE
Confidence 4688888887433 333556666776643 5577889999999999999999999999999988877666555677
Q ss_pred ccCCcEEEEeeeeecCceeEEeecC---------------CCCEEEEcCce--eeeecCceEEEEEEeeccCCceEEEEe
Q psy12803 343 VASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRR--VGVPIGRTATLECEVEAFPLSVRYWEF 405 (902)
Q Consensus 343 ~~~~sL~I~~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~--~~v~~G~~v~L~C~a~g~P~P~v~W~k 405 (902)
...++|+|++|+.+|+|.|+|.|+| .+|.|...+.. +.+..|.++.|.|.+.+.|.|.+.|.+
T Consensus 383 i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k 462 (1051)
T KOG3513|consen 383 IDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK 462 (1051)
T ss_pred EeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc
Confidence 7889999999999999999999999 45666665544 467889999999999999999999988
Q ss_pred cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCC
Q psy12803 406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVP 474 (902)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~ 474 (902)
.+..+ .++.++.+.. +++ |.|.+++.+|+|.|+|+|.|.+|.++....|.|.+++.+..
T Consensus 463 ~~~~~--~~~~r~~i~e--dGt------L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~ 521 (1051)
T KOG3513|consen 463 GGEKL--LQSGRIRILE--DGT------LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL 521 (1051)
T ss_pred CCccc--ccCceEEECC--CCc------EEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe
Confidence 77733 3455666544 333 99999999999999999999999999999999998876543
No 5
>KOG3513|consensus
Probab=99.84 E-value=4.2e-20 Score=221.87 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=154.4
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN---------- 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------- 367 (902)
++++...+|+.|.|.|.|.|+|.|+|.|+|.++..+. +.........+|.|.+++.+|+|.|+|.|+|
T Consensus 248 p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~--~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~ 325 (1051)
T KOG3513|consen 248 PETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP--RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGH 325 (1051)
T ss_pred CCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC--cceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEE
Confidence 4467788999999999999999999999999987443 2223344566999999999999999999999
Q ss_pred ----CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCC-ceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803 368 ----VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDG-VKYSISDVDKGSYQYIMQLNISNVNIS 442 (902)
Q Consensus 368 ----~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~~~s~~~~stL~I~~V~~~ 442 (902)
.+|.++..+++..+..|+++.|.|.+.|.|.|+++|++++.++...+. .++.+.. + +|+|.+|+.+
T Consensus 326 v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~---g------~L~is~v~~~ 396 (1051)
T KOG3513|consen 326 VTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD---G------TLIISNVQES 396 (1051)
T ss_pred EEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC---C------EEEEEecccc
Confidence 789999999999999999999999999999999999999988764333 2233332 2 3999999999
Q ss_pred CCeEEEEEEEeCCceeEEEEEEEeecCCCCCCC-CCCcceEEEEeCCCCCCccccCCCCcccCCC
Q psy12803 443 DFDTYRCISKNEVDIAKGSLILFESNAKTPVPT-EKEQEEVTVYNRAPKPEGQDDLCPPQVLCPP 506 (902)
Q Consensus 443 DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~-~~~~~~v~~~~~~~~~~~~~~~C~~~~v~~~ 506 (902)
|+|.|.|.|+|..|...+++.|.|....+..+. .......+..+......|....-+-+.+-|.
T Consensus 397 dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~ 461 (1051)
T KOG3513|consen 397 DSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL 461 (1051)
T ss_pred cCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence 999999999999999999999999987444322 3333334555555666644444333444444
No 6
>KOG3544|consensus
Probab=99.82 E-value=1.9e-19 Score=201.26 Aligned_cols=98 Identities=16% Similarity=0.065 Sum_probs=61.0
Q ss_pred cccccccccCCCCCCceEeeCchhHHHHHHHhhhhhcccCCCcceeecccCCC-------chhh--------------cc
Q psy12803 42 KDKGDIFDNSVPQTPHVEFVPPDLYEEIREREKEQQNSTHNNPWVWLNAYSRI-------PLVA--------------MQ 100 (902)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~w~~l~~~~~~-------~~~~--------------~~ 100 (902)
.+.+.++.+..+....+.|...+........++.+|+..++++|..|..+... .... ..
T Consensus 20 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 99 (327)
T KOG3544|consen 20 GTPSAPAVLGPLLGVPGLYGYVGSVGSPLPPGLGFFGERGDPGWPGPTGPPGLPGVTGPKGEKGYPGGPLGPRGEPGPPG 99 (327)
T ss_pred ccccccccccceecccccccCCCCcCCcCCCcccccccccccccccccccccccCCCCCCCcCCCCCCCCCcCCCCCCCC
Confidence 44455555555546666666665555555777899999999999887654211 0000 02
Q ss_pred cccCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12803 101 GFCNS--TKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEK 139 (902)
Q Consensus 101 ~~c~~--~~~~c~~g~~G~~G~~G~~G~~G~~G~~G~~G~~ 139 (902)
+.|.. ....|++|++|++|.+|.+|.+|.+|..|..|.+
T Consensus 100 ~~~~~~~~~~~cp~GppGp~G~pG~~G~pG~~g~~G~~G~p 140 (327)
T KOG3544|consen 100 CQGPPGEQGEKCPPGPPGPPGPPGPPGPPGVPGAPGLPGEP 140 (327)
T ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 45554 5667898888888888777777766444444433
No 7
>KOG4194|consensus
Probab=99.79 E-value=7.5e-19 Score=196.76 Aligned_cols=210 Identities=18% Similarity=0.243 Sum_probs=154.5
Q ss_pred cccCCceeecCCcEEEEcCCeEEEEEecCC--CCCCceEEecCCCcccccCCcc----cee----------ccCCcEEEE
Q psy12803 288 TIVGSEHIFSSSPIVVREGDNVRLRCVATG--HPKPSIIWKTSENKPITLGSWK----DSA----------VASSTLNFT 351 (902)
Q Consensus 288 ~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~~~~~~~~~~----~~~----------~~~~sL~I~ 351 (902)
.+..+..+..|.++.+..|++++|+|.|.+ ..+.++.|.+++.......... ..+ .-.+.|.+.
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 344556666778888889999999999887 4566899999765322111000 000 012469999
Q ss_pred eeeeecCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCe-eeecCC
Q psy12803 352 RINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT-LIEHDG 415 (902)
Q Consensus 352 ~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~-l~~~~~ 415 (902)
+|+..|+|.|+|++.| ..|.|+..|.+..+..|+.+.|.|.++|.|.|+|.|.|+++. ++....
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e 659 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE 659 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence 9999999999999999 689999999999999999999999999999999999998887 444444
Q ss_pred ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCCCCCCcceEEEEeCCCCCCccc
Q psy12803 416 VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQD 495 (902)
Q Consensus 416 ~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~~~~~~~v~~~~~~~~~~~~~ 495 (902)
++..+.... .. +.|.+|+.+|+|.|+|.|.|.+|..++.+.|.|.+.|.... +.....+.++....+.|..
T Consensus 660 RRl~Vmped-d~------f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~--PL~~~~V~~get~vlqC~a 730 (873)
T KOG4194|consen 660 RRLHVMPED-DV------FFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSI--PLEDQLVVVGETLVLQCLA 730 (873)
T ss_pred heeeecCCC-CE------EEEecccccccceeEEeeeccccceeeceEEEEecCCcccc--cccceEEEecceEEEEEec
Confidence 444443333 22 88999999999999999999999999999999998765422 2333444555555666444
Q ss_pred cCCCC-cccCCC
Q psy12803 496 DLCPP-QVLCPP 506 (902)
Q Consensus 496 ~~C~~-~~v~~~ 506 (902)
+.-++ +..-|.
T Consensus 731 ~~~~a~pr~~W~ 742 (873)
T KOG4194|consen 731 EGAPADPRLEWF 742 (873)
T ss_pred CCCCCCcccccc
Confidence 44333 334444
No 8
>KOG4194|consensus
Probab=99.78 E-value=1.3e-18 Score=195.00 Aligned_cols=195 Identities=21% Similarity=0.336 Sum_probs=163.1
Q ss_pred ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-
Q psy12803 263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS- 341 (902)
Q Consensus 263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~- 341 (902)
-.|...|.+++..+....+++.+.|.|. ..|.++++..|+.+.|.|.|+|.|.|+|.|.|+++.-.+....++.
T Consensus 589 YQCVvtN~FGStysqk~KltV~~~PsFt-----ktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~ 663 (873)
T KOG4194|consen 589 YQCVVTNHFGSTYSQKAKLTVNQAPSFT-----KTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLH 663 (873)
T ss_pred EEEEEecccCcchhheeEEEeeccCccc-----cCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheee
Confidence 5799999999999999999999999884 3567899999999999999999999999999998875554443332
Q ss_pred -eccCCcEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeeccCC-ceEEEEe
Q psy12803 342 -AVASSTLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEF 405 (902)
Q Consensus 342 -~~~~~sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k 405 (902)
.-++..+.|.||+.+|+|.|+|.|.| ..|.+.++..++.|..|+++.|.|.+.+.|. |.+.|+|
T Consensus 664 Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k 743 (873)
T KOG4194|consen 664 VMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFK 743 (873)
T ss_pred ecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccC
Confidence 23566899999999999999999999 5677777788899999999999999999998 9999999
Q ss_pred cCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803 406 IDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKT 471 (902)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~ 471 (902)
.++++.......+. ..+- .|++.++..+|+|.|+|...|..|.....+.+.|...+.
T Consensus 744 ~d~pil~t~rh~f~---d~dQ------llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 744 EDKPILITERHTFP---DGDQ------LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred CCCceEEeecccCC---CCCe------EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence 99988765544332 1221 289999999999999999999999988888777765443
No 9
>KOG3546|consensus
Probab=99.75 E-value=3e-17 Score=182.87 Aligned_cols=37 Identities=32% Similarity=0.576 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCC
Q psy12803 241 KGMTGPRGNRGKSGINGVPGTPAICAYKRESCSLLPN 277 (902)
Q Consensus 241 ~G~~G~~G~~G~~g~~g~~G~pg~c~~kN~scs~~s~ 277 (902)
.|-+|++|+.|..|.+|.+|.+|...-|.+-+++.+.
T Consensus 639 ~gfpgp~gpkg~~g~~g~~g~~g~~gekgepg~i~s~ 675 (1167)
T KOG3546|consen 639 AGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSP 675 (1167)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccCC
Confidence 3444444455555555555555555555555555544
No 10
>KOG4221|consensus
Probab=99.72 E-value=8.9e-17 Score=192.12 Aligned_cols=194 Identities=20% Similarity=0.269 Sum_probs=148.5
Q ss_pred cccccccc-ccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce
Q psy12803 263 AICAYKRE-SCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS 341 (902)
Q Consensus 263 g~c~~kN~-scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~ 341 (902)
-.|.+... .+++.+....+.+.-.+.+ ...+.+.++..|+++.|.|.+.+.|.|.+.|.|++..+ .... +..
T Consensus 116 Yqc~atv~~~gsi~Sr~a~v~~a~~~~f-----~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl-~~~~-r~i 188 (1381)
T KOG4221|consen 116 YQCLATVEDVGSILSRTAKVALAGLADF-----ALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPL-PLDS-RVI 188 (1381)
T ss_pred EEEEEEccccceeecceEEEEecccCcc-----ccCccceeEecCCcEEEEEEEcCccCceeEEecccccc-cCCC-cEE
Confidence 34555444 5666665544333333333 22345688999999999999999999999999977644 3333 778
Q ss_pred eccCCcEEEEeeeeecCceeEEeecC---------------------CCCEEEEcCceeeeecCceEEEEEEeeccCCce
Q psy12803 342 AVASSTLNFTRINRINMGAYMCLADN---------------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSV 400 (902)
Q Consensus 342 ~~~~~sL~I~~Vt~~DsG~YtC~A~N---------------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~ 400 (902)
...++.|.|.+++..|.|.|.|.+.+ ....|...+.+..+.+|+++.|+|.+.+.|.|.
T Consensus 189 ~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~ 268 (1381)
T KOG4221|consen 189 VLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS 268 (1381)
T ss_pred EcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc
Confidence 88999999999999999999999998 233456677788899999999999999999999
Q ss_pred EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803 401 RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP 472 (902)
Q Consensus 401 v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~ 472 (902)
|.|.+++..+.. ++.++.+... . .|.|.+++..|+|.|+|+|.|......+++.|.|..+|..
T Consensus 269 v~Wlrng~~i~~-ds~rivl~g~--~------slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~ 331 (1381)
T KOG4221|consen 269 VKWLRNGEKISV-DSYRIVLVGG--S------SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGF 331 (1381)
T ss_pred eEEeeCCeeeee-cceEEEEecc--c------ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCC
Confidence 999987766644 4444444322 2 2999999999999999999997777777888888877654
No 11
>KOG3546|consensus
Probab=99.71 E-value=1.5e-16 Score=177.39 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=21.3
Q ss_pred eEEEEec--cccccccceEEEecEEEEEeecCCCcceEEEEEeCCC
Q psy12803 720 QYTWNIT--LLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYK 763 (902)
Q Consensus 720 ~~tw~t~--~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~ 763 (902)
+-.|+-+ +.-+.|+| +|+-...|+| ..+...|+|||-+
T Consensus 1101 klvwhgsSplgirlags---ycegwrtvss---ggtgfasaldlgs 1140 (1167)
T KOG3546|consen 1101 KLVWHGSSPLGIRLAGS---YCEGWRTVSS---GGTGFASALDLGS 1140 (1167)
T ss_pred hheecCCCccchhhhhc---cccceeEecC---Ccccccccccccc
Confidence 3345544 23334444 5777777766 3446777777754
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=168.91 Aligned_cols=148 Identities=16% Similarity=0.272 Sum_probs=105.2
Q ss_pred CcEEEEcCCeEEEEEecCCCC-----------CCceEEecCCCcccccC--C--------ccceeccCCcEEEEeeeeec
Q psy12803 299 SPIVVREGDNVRLRCVATGHP-----------KPSIIWKTSENKPITLG--S--------WKDSAVASSTLNFTRINRIN 357 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G~P-----------~p~v~W~k~~~~~~~~~--~--------~~~~~~~~~sL~I~~Vt~~D 357 (902)
..+.+.+|++|.|.|.+.+.| .+.|.|+|.+....... . .......+++|+|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 347789999999999987754 45899999764321110 0 01111235689999999999
Q ss_pred CceeEEeecCC--------CCEEEEcCceeeeecCceEEEEEEee-----ccCCceEEEEecCCeeeecCCceEEEeecC
Q psy12803 358 MGAYMCLADNV--------PPQILIRNRRVGVPIGRTATLECEVE-----AFPLSVRYWEFIDGTLIEHDGVKYSISDVD 424 (902)
Q Consensus 358 sG~YtC~A~N~--------~P~i~~~p~~~~v~~G~~v~L~C~a~-----g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~ 424 (902)
+|.|+|.|.|. ...+.....+..+.+|++++|+|.+. +.|.|+++|++++..+.... ++.+.. .
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~--r~~~~~-~ 186 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD--RIQLRN-N 186 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC--CEEEeC-C
Confidence 99999999991 11222233445678899999999986 34679999999887765322 333322 1
Q ss_pred CCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 425 ~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
. .+|.|.+|+.+|+|.|+|+|+...
T Consensus 187 ~------~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 187 N------STLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred C------CEEEECcCCHHhCEEEEEEEEEeE
Confidence 1 249999999999999999998865
No 13
>KOG4221|consensus
Probab=99.69 E-value=4.3e-17 Score=194.77 Aligned_cols=167 Identities=27% Similarity=0.413 Sum_probs=141.5
Q ss_pred eeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC------
Q psy12803 294 HIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------ 367 (902)
Q Consensus 294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------ 367 (902)
++..+.+.++.+|++|.|.|.+.+.|.|+|.|.|++..+. ..+.+......++|.|++++.+|+|.|+|+|.|
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~-~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~id 318 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKIS-VDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSID 318 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeee-ecceEEEEecccceEEeccccccCceEEEEecCCCcccc
Confidence 4567888999999999999999999999999999665544 444566666778999999999999999999998
Q ss_pred --------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc
Q psy12803 368 --------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV 439 (902)
Q Consensus 368 --------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V 439 (902)
.+|.|+..+.+....++.+++|.|.+.+.|.|.+.|+|++..+...+ .+++.... . |.|.-+
T Consensus 319 asaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsd--y~ki~~~~--~------lrIlgi 388 (1381)
T KOG4221|consen 319 ASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSD--YFKIVGGG--N------LRILGI 388 (1381)
T ss_pred cceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCccc--ceEecCCC--C------cEEEEE
Confidence 67888888999999999999999999999999999999998887633 33333322 2 888888
Q ss_pred CCCCCeEEEEEEEeCCceeEEEEEEEeecCCC
Q psy12803 440 NISDFDTYRCISKNEVDIAKGSLILFESNAKT 471 (902)
Q Consensus 440 ~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~ 471 (902)
-..|.|.|.|+++|.+|.+...+.|.|...+.
T Consensus 389 ~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~ 420 (1381)
T KOG4221|consen 389 VKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA 420 (1381)
T ss_pred ecccchhhhhhhccCcccccchhhheeccCCc
Confidence 89999999999999999999999887765533
No 14
>KOG4222|consensus
Probab=99.67 E-value=1.5e-16 Score=189.37 Aligned_cols=229 Identities=19% Similarity=0.264 Sum_probs=174.9
Q ss_pred ccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccce
Q psy12803 263 AICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDS 341 (902)
Q Consensus 263 g~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~ 341 (902)
-.|.++|.++.+.+....+.+.+...- +-..+..+.+..|+.++|.|.- .+.|.|.|.|.|++..+.......+.
T Consensus 107 y~cvasn~~g~avSr~a~L~vavlrdd----frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~ 182 (1281)
T KOG4222|consen 107 YSCVASNRLGEAVSRGASLIVAVLRDD----FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA 182 (1281)
T ss_pred eEeeecCccceeeecCceEEEEEechh----cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence 458888888887777766666665433 2234566888999999999984 57999999999998887644445566
Q ss_pred eccCCcEEEEeeeeecCceeEEeecC---------------CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEec
Q psy12803 342 AVASSTLNFTRINRINMGAYMCLADN---------------VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI 406 (902)
Q Consensus 342 ~~~~~sL~I~~Vt~~DsG~YtC~A~N---------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~ 406 (902)
....+.|.|.+|..+|+|+|.|++.| .+|.|...+.++.+.+|..+.|.|.+.|.|.|++.|.+.
T Consensus 183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~ 262 (1281)
T KOG4222|consen 183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD 262 (1281)
T ss_pred EecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeecc
Confidence 67889999999999999999999999 688888899999999999999999999999999999886
Q ss_pred CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCCCCCCCCcceEEEEe
Q psy12803 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQEEVTVYN 486 (902)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~~~~~~~~~~v~~~~ 486 (902)
+..+. ..++.+.... . +|.|.+++..|.|.|.|.|.|.+|..+++..|+|..++....... ...+..+
T Consensus 263 ~~~~P---~~ry~i~~d~-q------tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~--dq~v~lg 330 (1281)
T KOG4222|consen 263 DPSLP---RSRYSILDDT-Q------TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPR--DQKVALG 330 (1281)
T ss_pred CCCCC---ccceeeeecc-c------cccccccCCCcccceeeeccccccccccccceEEecCcccccccC--ccccccC
Confidence 66553 2333433221 1 399999999999999999999999999999999998776532222 2223333
Q ss_pred CCCCCCccccCCCCcccCCCC
Q psy12803 487 RAPKPEGQDDLCPPQVLCPPC 507 (902)
Q Consensus 487 ~~~~~~~~~~~C~~~~v~~~c 507 (902)
....+.|....-+++.+.|..
T Consensus 331 ~~vt~pc~~~gnP~PavfW~k 351 (1281)
T KOG4222|consen 331 GTVTFPCETLGNPPPAVFWLK 351 (1281)
T ss_pred ceEEeeeecCCCCCcceEEec
Confidence 334455555555555555553
No 15
>KOG3544|consensus
Probab=99.64 E-value=4.4e-15 Score=166.15 Aligned_cols=22 Identities=45% Similarity=0.835 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q psy12803 110 CPPGLQGPIGQKGEIGAKGEMG 131 (902)
Q Consensus 110 c~~g~~G~~G~~G~~G~~G~~G 131 (902)
.++|++|.+|.+|.+|.+|..|
T Consensus 114 GppGp~G~pG~~G~pG~~g~~G 135 (327)
T KOG3544|consen 114 GPPGPPGPPGPPGPPGVPGAPG 135 (327)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
Confidence 6667766666666666663333
No 16
>KOG4222|consensus
Probab=99.64 E-value=2.6e-15 Score=178.85 Aligned_cols=205 Identities=22% Similarity=0.268 Sum_probs=147.5
Q ss_pred ceeecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc-CCccceeccCCcEEEEeee-----eecCceeEEeec
Q psy12803 293 EHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL-GSWKDSAVASSTLNFTRIN-----RINMGAYMCLAD 366 (902)
Q Consensus 293 ~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~-~~~~~~~~~~~sL~I~~Vt-----~~DsG~YtC~A~ 366 (902)
.++..+.++.+..|+.++|.|.++|.|.|+|+|+|++..+... ....++...+++|.+..+. ..|.|.|+|+|+
T Consensus 33 ~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvas 112 (1281)
T KOG4222|consen 33 RIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVAS 112 (1281)
T ss_pred ceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeec
Confidence 3455667788999999999999999999999999988654432 2344566677777776552 349999999999
Q ss_pred C----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCcee
Q psy12803 367 N----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429 (902)
Q Consensus 367 N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~ 429 (902)
| -.-.|.+.+.++.+..|+.+.|+|.- .+.|.|.+.|.|++..+.......+.+...++
T Consensus 113 n~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~---- 188 (1281)
T KOG4222|consen 113 NRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN---- 188 (1281)
T ss_pred CccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc----
Confidence 9 23344556677888899999999965 68899999998888877633333333333322
Q ss_pred eEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEEeecCCCCCCCCCCcceEEEEeCCCCCCccccCCCCcccCCCC
Q psy12803 430 YIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILFESNAKTPVPTEKEQEEVTVYNRAPKPEGQDDLCPPQVLCPPC 507 (902)
Q Consensus 430 ~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~C~~~~v~~~c 507 (902)
|.|.+|..+|+|.|.|+|.|.+|.. +..++|.|.+++.-. ......++.++......|.+..-+.+.+.|.|
T Consensus 189 ----LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~--~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk 261 (1281)
T KOG4222|consen 189 ----LLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW--KRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK 261 (1281)
T ss_pred ----EEEeccccCCCceeeeeecccccccccccceeeeccCCccc--cccccceeecccccccccccCCCCCCceeeec
Confidence 9999999999999999999999986 567788888776542 22223334444445555444444445555555
No 17
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=5.5e-15 Score=164.99 Aligned_cols=154 Identities=20% Similarity=0.348 Sum_probs=108.7
Q ss_pred cEEEEcCCeEEEEEe-----cCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------
Q psy12803 300 PIVVREGDNVRLRCV-----ATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------- 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~-----a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------- 367 (902)
+..+.+|+.+.|.|. ..+.|.+.|+|+++. .+ ...+.....++.|.|.+|+.+|+|.|+|.|.|
T Consensus 130 ~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~---~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 130 PQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL---RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred cceecccCcEEEECCChhhcccCCCCceEEEccCC-cc---CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 355779999999997 246789999998853 21 22233344567899999999999999999998
Q ss_pred --------------CCCEEEEcCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeeeecC---CceEEEeecC---
Q psy12803 368 --------------VPPQILIRNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLIEHD---GVKYSISDVD--- 424 (902)
Q Consensus 368 --------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~~~~---~~~~~~~~~~--- 424 (902)
.+|.+ ..+..+.+..|++++|.|.+.+.|. +.+.|++++..+...+ ..++......
T Consensus 206 ~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~ 284 (326)
T PHA02785 206 NVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTT 284 (326)
T ss_pred eEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccc
Confidence 01222 2345566778999999999999886 4899999876653221 1122221111
Q ss_pred CCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803 425 KGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458 (902)
Q Consensus 425 ~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~ 458 (902)
.......+.|+|.+|+.+|+|.|+|+|.|..+..
T Consensus 285 ~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 285 DKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred ccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 1111235679999999999999999999988543
No 18
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.62 E-value=4.3e-15 Score=165.79 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=106.0
Q ss_pred EEEEcCCeEEEEEec-----CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC-------
Q psy12803 301 IVVREGDNVRLRCVA-----TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV------- 368 (902)
Q Consensus 301 v~v~eGe~v~L~C~a-----~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~------- 368 (902)
..+.+|+.+.|.|.+ .|.|.++++|+|++... ........+..|.|.++..+|+|.|+|+|.|.
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~----~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADN----DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc----ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 346689999999997 68899999999986431 11122223345899999999999999999991
Q ss_pred ---------CCEEEEcCceeeeecCceEEEEEE-----eeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEE
Q psy12803 369 ---------PPQILIRNRRVGVPIGRTATLECE-----VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQL 434 (902)
Q Consensus 369 ---------~P~i~~~p~~~~v~~G~~v~L~C~-----a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL 434 (902)
++.+...+..+.+.+|..+.|.|. ..+.|.+.|+|+++. .+ ...++.. ... +.|
T Consensus 112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~---~~~r~~~--~~~------~~L 179 (326)
T PHA02785 112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL---RNKRLKQ--RTP------GII 179 (326)
T ss_pred EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-cc---CCcceEe--cCC------CeE
Confidence 111111223355778999999996 346788999997643 22 1222222 111 249
Q ss_pred EEeccCCCCCeEEEEEEEeCCceeE----EEEEEEeec
Q psy12803 435 NISNVNISDFDTYRCISKNEVDIAK----GSLILFESN 468 (902)
Q Consensus 435 ~I~~V~~~DsG~YtC~A~N~~G~~~----~s~~L~V~~ 468 (902)
.|.+|+.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus 180 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~ 217 (326)
T PHA02785 180 TIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD 217 (326)
T ss_pred EEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec
Confidence 9999999999999999999988654 344566654
No 19
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.48 E-value=2.3e-13 Score=125.03 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=81.2
Q ss_pred CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
|.|...+.++.+..|+.+.|.|.+.|.|.|++.|++++..+... .++.+..... .+.|.|.++..+|+|.|+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~--~~~~~~~~~~-----~s~L~I~~~~~~D~G~Ytc 73 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG--EGIKIENTEN-----SSKLTITEGQQEHCGCYTL 73 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC--CcEEEEecCC-----eeEEEECCCChhhCEEEEE
Confidence 56788889999999999999999999999999999988776432 3344333222 3469999999999999999
Q ss_pred EEEeCCceeEEEEEEEeecCCCCC
Q psy12803 450 ISKNEVDIAKGSLILFESNAKTPV 473 (902)
Q Consensus 450 ~A~N~~G~~~~s~~L~V~~~p~~~ 473 (902)
.|.|.+|...+++.|.|.+.|.++
T Consensus 74 ~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 74 EVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEcCCCceeEEEEEEEecCCCCC
Confidence 999999999999999999887653
No 20
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=1.4e-12 Score=117.41 Aligned_cols=88 Identities=24% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
+|.|...+.++.+.+|+.+.|.|.+.|.|.|.++|++++..+.. ..++.. .. ..|.|.+++.+|+|.|+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~---~~------~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA--TAEISM---SG------AVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC--CCEEec---CC------CEEEECcCChhhCEEEE
Confidence 57889999999999999999999999999999999998866532 222221 11 24999999999999999
Q ss_pred EEEEeCCceeEEEEEEEee
Q psy12803 449 CISKNEVDIAKGSLILFES 467 (902)
Q Consensus 449 C~A~N~~G~~~~s~~L~V~ 467 (902)
|.|.|.+|..+.++.|.|+
T Consensus 70 C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 70 CEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEEEcCCCceEEEEEEEEC
Confidence 9999999999999999874
No 21
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.37 E-value=4.8e-12 Score=113.87 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=69.4
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+.++|.|.+.|.|.+.+.|++++..+.. ...++.+.....+ ....++|.|.+++.+|+|.|+|+|.|.+|..++++.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~-~~~r~~~~~~~~~-~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP-EMSRYLVSTKEVG-DEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC-CCCcEEEEEecCC-CcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78999999999999999999887765533 2334444332221 244678999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy12803 464 LFESNAKTP 472 (902)
Q Consensus 464 L~V~~~p~~ 472 (902)
|.|.++|..
T Consensus 79 L~V~~~P~~ 87 (88)
T cd05735 79 LTVQEPPDP 87 (88)
T ss_pred EEEeCCCCC
Confidence 999987654
No 22
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.37 E-value=4.7e-12 Score=116.91 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=70.5
Q ss_pred ceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 377 RRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
..+.+.+|++++|.|.++| .|+|.+.|+|++..+.. ...... .........+.++|.|.+++.+|+|.|+|+|.|..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~-~~~~~~-~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTN-KLTEIV-TSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCC-CcceeE-EEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 4678999999999999999 89999999998776643 222222 11111223456789999999999999999999999
Q ss_pred ceeEEEEEEEee
Q psy12803 456 DIAKGSLILFES 467 (902)
Q Consensus 456 G~~~~s~~L~V~ 467 (902)
|.++.++.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999999999885
No 23
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.34 E-value=5.5e-12 Score=114.38 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=68.5
Q ss_pred cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
.+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+..... +.+...... .++|.|.+++.+|+|.|+|.|.|.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~--~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDH--YNVKVEQGK----YASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCC--EEEEEcCCC----EEEEEEccCChhhCEEEEEEEEEC
Confidence 45567899999999999999999999999998876644333 232222111 245999999999999999999999
Q ss_pred CceeEEEEEEEe
Q psy12803 455 VDIAKGSLILFE 466 (902)
Q Consensus 455 ~G~~~~s~~L~V 466 (902)
+|..+.++.|.|
T Consensus 81 ~G~~~~~~~v~v 92 (92)
T cd05737 81 YGGETVDVTVSV 92 (92)
T ss_pred CCcceEEEEEeC
Confidence 999999988875
No 24
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.34 E-value=1.1e-11 Score=113.34 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=68.9
Q ss_pred EEEcCceeeeecCceEEEEEEeeccCC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFPL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
+.+.|....+.+|++++|.|.+.|.|. |.++|++.++..+.....++.+..... ..++|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~----~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD----YSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC----CceEEEEeccChhhCEEEEEE
Confidence 345566778999999999999999995 799999844443222233443322221 245799999999999999999
Q ss_pred EEeCC-ceeEEEEEEEe
Q psy12803 451 SKNEV-DIAKGSLILFE 466 (902)
Q Consensus 451 A~N~~-G~~~~s~~L~V 466 (902)
|.|.+ |.+++++.|.|
T Consensus 79 A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 79 VSNEDEGESEATVNVKI 95 (96)
T ss_pred EEcCCCCcEEEEEEEEE
Confidence 99997 88999998876
No 25
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.32 E-value=8.9e-12 Score=115.15 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=70.4
Q ss_pred eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
...+..|+.+.|.|.+.|+|.|.+.|+|++..+..... .+.........+.+.++|.|.+++.+|+|.|+|+|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLT-EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcc-eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 56788899999999999999999999998877653322 22111111112345678999999999999999999999999
Q ss_pred eEEEEEEEee
Q psy12803 458 AKGSLILFES 467 (902)
Q Consensus 458 ~~~s~~L~V~ 467 (902)
++.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
No 26
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.32 E-value=1.2e-11 Score=110.94 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred eeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+..... .++|.|.++..+|+|.|+|.|.|.+|.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~-----~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVESYKD-----LSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC-CCeEEEEEcCC-----eEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 467889999999999999999999999988766432 22444433221 356999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy12803 458 AKGSLILFE 466 (902)
Q Consensus 458 ~~~s~~L~V 466 (902)
+++++.|.|
T Consensus 78 ~~~~~~l~V 86 (86)
T cd05894 78 DHASLFVKV 86 (86)
T ss_pred EEEEEEEEC
Confidence 999998875
No 27
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.32 E-value=1.6e-11 Score=110.09 Aligned_cols=90 Identities=29% Similarity=0.361 Sum_probs=75.8
Q ss_pred CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+....... +.... ..++|.|.+++.+|+|.|+|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~--~~~~~-----~~~~L~I~~v~~~D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQ--IESDG-----GSSSLTIKNVTREDAGTYTC 73 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEE--EEEET-----TEEEEEESSESGGGSEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeee--eeccc-----ceeEEccCCCChhhCEEEEE
Confidence 678888899999999999999999999999999999977765533333 33222 24569999999999999999
Q ss_pred EEEeCCceeEEEEEEEe
Q psy12803 450 ISKNEVDIAKGSLILFE 466 (902)
Q Consensus 450 ~A~N~~G~~~~s~~L~V 466 (902)
.|.|..|..++++.|.|
T Consensus 74 ~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 74 VASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEC
Confidence 99999999999999876
No 28
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.31 E-value=9.2e-12 Score=108.58 Aligned_cols=75 Identities=25% Similarity=0.333 Sum_probs=60.5
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
|.|+|.+.|.|.|.|.|++++..+.. +..++.+.....+ .++|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~-~~~r~~~~~~~~g----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQY-NTDRISLYQDNSG----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcC-CCCeEEEEEcCCC----cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999998766643 3345555433322 135999999999999999999999999999999875
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.31 E-value=1.4e-11 Score=110.60 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
|+.+...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+.... ... .. ...|.|.+++.+|+|.|+
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~--~~~---~~------~~~L~i~~v~~~D~G~Y~ 69 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSA--EIS---MS------GAVLKIPNIQFEDEGTYE 69 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCcc--EEE---Ee------CCEEEECCCCcccCEEEE
Confidence 4567777888889999999999999999999999999877654321 111 11 134999999999999999
Q ss_pred EEEEeCCceeEEEEEEEee
Q psy12803 449 CISKNEVDIAKGSLILFES 467 (902)
Q Consensus 449 C~A~N~~G~~~~s~~L~V~ 467 (902)
|.|.|..|..+.++.|.|.
T Consensus 70 C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 70 CEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEEEECCCcEEEEEEEEEC
Confidence 9999999999999998873
No 30
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.30 E-value=2.6e-11 Score=111.03 Aligned_cols=93 Identities=16% Similarity=0.310 Sum_probs=71.6
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC---CceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD---GVKYSISDVDKGSYQYIMQLNISNVNISDFD 445 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~---~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG 445 (902)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+.... ..++.+... ...++|.|.+++.+|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH-----ARVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC-----ccEEEEEEecCccCcCE
Confidence 5788877766666678999999999999999999998765543211 112222111 12357999999999999
Q ss_pred EEEEEEEeCCceeEEEEEEEe
Q psy12803 446 TYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 446 ~YtC~A~N~~G~~~~s~~L~V 466 (902)
.|+|.|.|.+|.+++++.|.|
T Consensus 77 ~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 77 EYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCCCCeeEEEEEEC
Confidence 999999999999999998875
No 31
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.30 E-value=1.2e-11 Score=112.07 Aligned_cols=91 Identities=23% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
.+|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+.... ..++|.|.+++.+|+|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~--~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y 74 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS--SQRHQITSTE-----YKSTFEISKVQMSDEGNY 74 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC--CCcEEEEEcC-----CeeEEEECCCCcccCEeE
Confidence 368888889999999999999999999999999999998765533 2233332221 135699999999999999
Q ss_pred EEEEEeCCceeEEEEEEE
Q psy12803 448 RCISKNEVDIAKGSLILF 465 (902)
Q Consensus 448 tC~A~N~~G~~~~s~~L~ 465 (902)
+|.|.|.+|..+.++.|+
T Consensus 75 ~C~a~N~~G~~~~~~~l~ 92 (92)
T cd05747 75 TVVVENSEGKQEAQFTLT 92 (92)
T ss_pred EEEEEcCCCCEeEEEEeC
Confidence 999999999999888763
No 32
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.27 E-value=2.5e-11 Score=110.50 Aligned_cols=92 Identities=24% Similarity=0.418 Sum_probs=71.3
Q ss_pred CCEEEEcC--ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803 369 PPQILIRN--RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446 (902)
Q Consensus 369 ~P~i~~~p--~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~ 446 (902)
||.|.... .+..+.+|+++.|.|.+.|.|.|.|.|++++..+... ..++.... . .+.|.|.+++.+|+|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~--~-----~~~L~I~~v~~~D~G~ 72 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNE--D-----GSEMTILDVDKLDEAE 72 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeC--C-----CCEEEECCCChhhCEE
Confidence 35555543 3457889999999999999999999999887665332 23333221 1 1349999999999999
Q ss_pred EEEEEEeCCceeEEEEEEEeec
Q psy12803 447 YRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 447 YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
|+|.|.|.+|..+.++.|.|..
T Consensus 73 Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 73 YTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEEEEEcCCCeEEEEEEEEEEe
Confidence 9999999999999999998864
No 33
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.27 E-value=1.4e-11 Score=106.83 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=60.5
Q ss_pred cCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803 383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL 462 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~ 462 (902)
+|+++.|.|.+.|.|.|.|.|++++..+... .++.+. .. .+|.|.+++.+|+|.|+|.|.|.+|..+.++
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~--~~------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVL--SS------GTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEc--cC------CeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 6899999999999999999999987665432 222221 12 2499999999999999999999999999999
Q ss_pred EEEe
Q psy12803 463 ILFE 466 (902)
Q Consensus 463 ~L~V 466 (902)
.|.|
T Consensus 71 ~L~V 74 (74)
T cd05745 71 QLTV 74 (74)
T ss_pred EEeC
Confidence 8875
No 34
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.27 E-value=2e-11 Score=106.49 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=60.6
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
|+|+|.+.|.|.|.|.|++++..+.. ...++.+.....+ .++|.|.+++.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH-NTDRVSMHQDNCG----YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC-CCCeEEEEEcCCC----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999998876643 3345554433222 235999999999999999999999999999999875
No 35
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.26 E-value=4.4e-11 Score=109.76 Aligned_cols=93 Identities=23% Similarity=0.304 Sum_probs=70.0
Q ss_pred CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecC--Ceeeec---CCceEEEeecCCCceeeEeEEEEeccCCC
Q psy12803 368 VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFID--GTLIEH---DGVKYSISDVDKGSYQYIMQLNISNVNIS 442 (902)
Q Consensus 368 ~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~--~~l~~~---~~~~~~~~~~~~~s~~~~stL~I~~V~~~ 442 (902)
++|.+.. +.++.+.+|++++|.|.+.|.|.|.|.|++.. ..+... ...++.+.... ..++|.|.+++.+
T Consensus 1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-----~~~~L~I~~v~~~ 74 (98)
T cd05870 1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-----GESSLHIKDVKLS 74 (98)
T ss_pred CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-----CeeEEEEeeCCcC
Confidence 3577765 66788999999999999999999999999853 222111 11233332111 1245999999999
Q ss_pred CCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 443 DFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 443 DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
|+|.|+|.|.|.+|....++.|.|
T Consensus 75 D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 75 DSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CCEEEEEEEeccCCcceeEEEEeC
Confidence 999999999999999999888865
No 36
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=1.9e-11 Score=109.10 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=69.4
Q ss_pred EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+.. ..++... . ..|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~--~~~~~~~---~------~~L~i~~~~~~D~G~Y~C~a 70 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS--ENRIEVE---A------GDLRITKLSLSDSGMYQCVA 70 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC--CCeEEEe---C------CEEEEeeCCHHHCEEEEEEE
Confidence 45567788999999999999999999999999998776532 2233321 1 24999999999999999999
Q ss_pred EeCCceeEEEEEEEe
Q psy12803 452 KNEVDIAKGSLILFE 466 (902)
Q Consensus 452 ~N~~G~~~~s~~L~V 466 (902)
.|..|...+++.|.|
T Consensus 71 ~N~~G~~~~~~~l~V 85 (85)
T cd05728 71 ENKHGTIYASAELAV 85 (85)
T ss_pred ECCCCeEEEEEEEEC
Confidence 999999999998875
No 37
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=2e-11 Score=105.86 Aligned_cols=73 Identities=27% Similarity=0.412 Sum_probs=60.4
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+++.|.|.+.|.|.|+|.|++++..+.. ..++.+.. ++ +|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~--~~r~~~~~--~g------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN--NSRISIWD--DG------SLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEeccc--CCCEEEcC--CC------EEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 67899999999999999999998765532 33444322 22 3999999999999999999999999999999
Q ss_pred EEe
Q psy12803 464 LFE 466 (902)
Q Consensus 464 L~V 466 (902)
|.|
T Consensus 71 l~~ 73 (73)
T cd05852 71 LSV 73 (73)
T ss_pred EEC
Confidence 875
No 38
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.24 E-value=6.3e-11 Score=107.88 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=70.5
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC---CceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD---GVKYSISDVDKGSYQYIMQLNISNVNISDFD 445 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~---~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG 445 (902)
+|.|. .+.+..+.+|+++.|.|.+.+.|.|.+.|++++..+.... ..++.+... ...++|.|.+++.+|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-----ARVSSLTLKDVQLTDAG 75 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC-----ccEEEEEECcCCcCcCE
Confidence 56775 4556789999999999999999999999999775443211 112222111 12457999999999999
Q ss_pred EEEEEEEeCCceeEEEEEEEe
Q psy12803 446 TYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 446 ~YtC~A~N~~G~~~~s~~L~V 466 (902)
.|+|.|.|.+|.++.++.|.|
T Consensus 76 ~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 76 RYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EeEEEEEeCCCCcEEEEEEeC
Confidence 999999999999999988865
No 39
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.24 E-value=3.5e-11 Score=109.18 Aligned_cols=86 Identities=21% Similarity=0.169 Sum_probs=68.1
Q ss_pred cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
.|..+.+.+|+++.|.|.+.+.|.|.+.|++++..+..... +........ .++|.|.+++.+|+|.|+|.|.|.
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEH--YSVKLEQGK----YASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCC--EEEEEcCCC----EEEEEECCCChhhCEEEEEEEEeC
Confidence 35567899999999999999999999999998876643322 222221111 245999999999999999999999
Q ss_pred CceeEEEEEEEe
Q psy12803 455 VDIAKGSLILFE 466 (902)
Q Consensus 455 ~G~~~~s~~L~V 466 (902)
+|.++.++.|.|
T Consensus 81 ~G~~~~~~~v~~ 92 (92)
T cd05891 81 YGGETVDVTVSV 92 (92)
T ss_pred CCceeeEEEEEC
Confidence 999999998875
No 40
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.24 E-value=5.1e-11 Score=108.62 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec---CCceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH---DGVKYSISDVDKGSYQYIMQLNISNVNISDFD 445 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~---~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG 445 (902)
+|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+... ...+.... ..+. .....+.+..++.+|+|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~~-~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL--PSGS-LFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEe--cCCc-EEEEEeeccCCCcCcCE
Confidence 588888999999999999999999999999999999987665431 11111111 1111 11122333345799999
Q ss_pred EEEEEEEeCCce-eEEEEEEEe
Q psy12803 446 TYRCISKNEVDI-AKGSLILFE 466 (902)
Q Consensus 446 ~YtC~A~N~~G~-~~~s~~L~V 466 (902)
.|+|.|.|.+|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999999 577777776
No 41
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.23 E-value=4.4e-11 Score=104.39 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=60.5
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSL 462 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~ 462 (902)
|+++.|.|.+.|.|.|+++|++++..+...... ++.. .. .+|.|.+++.+|+|.|+|.|.|..|...+++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~---~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV---SS------GALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe---eC------CEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 688999999999999999999987665432221 2222 11 2499999999999999999999999999999
Q ss_pred EEEee
Q psy12803 463 ILFES 467 (902)
Q Consensus 463 ~L~V~ 467 (902)
.|.|.
T Consensus 72 ~l~V~ 76 (76)
T cd05867 72 HVHVV 76 (76)
T ss_pred EEEEC
Confidence 99873
No 42
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.23 E-value=3.9e-11 Score=108.29 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=68.2
Q ss_pred EEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803 373 LIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452 (902)
Q Consensus 373 ~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~ 452 (902)
...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ...... ...++|.|.+++.+|.|.|+|.|.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~--~~~~~~-----~~~~~L~I~~v~~~D~g~Y~C~A~ 76 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRT--DTLETT-----VDIYNLQLSNITSETQTTVTCTAE 76 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCcc--EEEEec-----CCEEEEEEecCCcccCEEEEEEEE
Confidence 3455667799999999999999999999999998876533211 111111 113469999999999999999999
Q ss_pred eCCceeEEEEEEEe
Q psy12803 453 NEVDIAKGSLILFE 466 (902)
Q Consensus 453 N~~G~~~~s~~L~V 466 (902)
|..|...+++.|.|
T Consensus 77 N~~G~~~~~~~L~v 90 (90)
T cd04972 77 NPVGQANVSVQVTV 90 (90)
T ss_pred CCCCceeEEEEEeC
Confidence 99999999998865
No 43
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.22 E-value=5.5e-11 Score=105.73 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=64.3
Q ss_pred eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...... .+... .. ..+|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~------~~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-NQ------HWSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe-CC------ceEEEEccCCcccCEEEEEEEEeCCCE
Confidence 56889999999999999999999999988766432211 11111 11 235999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy12803 458 AKGSLILFE 466 (902)
Q Consensus 458 ~~~s~~L~V 466 (902)
.+.++.|.|
T Consensus 77 ~~~~~~l~v 85 (85)
T cd05857 77 INHTYHLDV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999998875
No 44
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.22 E-value=7.2e-11 Score=101.67 Aligned_cols=71 Identities=27% Similarity=0.402 Sum_probs=57.9
Q ss_pred eEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 386 ~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
++.|.|.+.|.|.|.++|++++..+.... ++.+... +. |.|.+++.+|+|.|+|.|.|.+|+.++++.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~--~~~~~~~--~~------l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSD--YFKIVKE--HN------LQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCC--CEEEEec--CC------EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 47899999999999999999887764322 3333222 22 88999999999999999999999999999987
Q ss_pred e
Q psy12803 466 E 466 (902)
Q Consensus 466 V 466 (902)
|
T Consensus 71 V 71 (71)
T cd05723 71 I 71 (71)
T ss_pred C
Confidence 5
No 45
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.22 E-value=8.8e-11 Score=107.76 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-CeE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDT 446 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-sG~ 446 (902)
||.+.. +..+.+.+|+++.|.|.+.|.|.| .|.|++++..+......++.+...... ....++|.|.+++.+| .|.
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence 566644 456778999999999999999999 699999887665443345555433221 2345789999999955 899
Q ss_pred EEEEEEeCCceeEEEEEE
Q psy12803 447 YRCISKNEVDIAKGSLIL 464 (902)
Q Consensus 447 YtC~A~N~~G~~~~s~~L 464 (902)
|+|.|.|..|.+++++.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888876
No 46
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.21 E-value=9.5e-11 Score=109.86 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCEEEEcCceeee----ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CC
Q psy12803 368 VPPQILIRNRRVGV----PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-IS 442 (902)
Q Consensus 368 ~~P~i~~~p~~~~v----~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~ 442 (902)
++|.|...+....+ ..|..+.|.|.+.|.|.|.+.|++++..+.. ...++.+..... .....++|+|.+++ .+
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~-~~~r~~~~~~~~-~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDL-GNPRYEETTEHT-GTVHTSILTIINVSAAL 80 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCC-CCCeEEEEeecc-CccceeEEEECcCCccC
Confidence 45677665552222 2457899999999999999999998766532 233443322221 11234679999997 69
Q ss_pred CCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803 443 DFDTYRCISKNEVDIAKGSLILFESNAK 470 (902)
Q Consensus 443 DsG~YtC~A~N~~G~~~~s~~L~V~~~p 470 (902)
|.|.|+|.|.|.+|.+..++.|.|...|
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999999998765
No 47
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.21 E-value=6.1e-11 Score=103.59 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=59.7
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|++++|.|.+.|.|.|+|.|++++..+........... .. ..|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DG------DTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cC------CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 67899999999999999999998776643221111111 11 24999999999999999999999999999999
Q ss_pred EEe
Q psy12803 464 LFE 466 (902)
Q Consensus 464 L~V 466 (902)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 987
No 48
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.20 E-value=7.6e-11 Score=102.75 Aligned_cols=75 Identities=25% Similarity=0.304 Sum_probs=59.3
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
++|.|.+.|.|.|.|.|++++..+.. ...++.+.....+ ..+|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~-~~~r~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY-NTDRISLYQDNCG----RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC-CCCcEEEEEcCCC----eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999999999999998766543 2334444332222 235999999999999999999999999999998875
No 49
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.19 E-value=1.2e-10 Score=104.01 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=62.0
Q ss_pred ceEEEEEEeeccCCc--eEEEEecCCeeeecC-CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803 385 RTATLECEVEAFPLS--VRYWEFIDGTLIEHD-GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461 (902)
Q Consensus 385 ~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~-~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s 461 (902)
++++|.|.+.|.|.| .+.|++++..+.... ..++....... ..++|+|.+++.+|+|.|+|.|.|.+|.++++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKE----TIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecc----eEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 468999999999987 579999876664321 22222111110 12469999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy12803 462 LILFESNAK 470 (902)
Q Consensus 462 ~~L~V~~~p 470 (902)
+.|.|..+|
T Consensus 77 ~~L~V~~~P 85 (85)
T cd05854 77 ATLVVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998754
No 50
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.19 E-value=9.6e-11 Score=103.75 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=58.7
Q ss_pred EEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 388 ~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
.|.|.+.|.|.|+|+|++++..+.....................+.|.|.+++.+|+|.|+|+|.|.+|.+++++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 378999999999999999887775433222222221111223456799999999999999999999999999988875
No 51
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.19 E-value=1.7e-10 Score=104.79 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=67.7
Q ss_pred EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
+.+.+.++.+.+|+++.|.|.+.|.|. .+.|+++++..+.. +.++.+..... .++|.|.++..+|+|.|+|.|
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~-~~r~~~~~~g~-----~~~L~I~~v~~~D~G~Y~C~A 75 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS-SQRVVVQKEGV-----RSRLTIYNANIEDAGIYRCQA 75 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC-CCCEEEEeCCC-----eeEEEEecCChHHCEEEEEEE
Confidence 445677788999999999999999998 89999865554432 33444432221 235999999999999999999
Q ss_pred EeCCcee-EEEEEEEe
Q psy12803 452 KNEVDIA-KGSLILFE 466 (902)
Q Consensus 452 ~N~~G~~-~~s~~L~V 466 (902)
+|..|.. ..++.|.|
T Consensus 76 ~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 76 TDAKGQTQEATVVLEI 91 (92)
T ss_pred EcCCCcEEEEEEEEEE
Confidence 9999986 67777765
No 52
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.18 E-value=8.2e-11 Score=102.21 Aligned_cols=76 Identities=25% Similarity=0.324 Sum_probs=60.5
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+++.|.|.+.|.|.|.|.|++++..+...... ... .... ..|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~-~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRR-RVDG------GTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceE-EccC------CEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 688999999999999999999887665433222 111 1111 34999999999999999999999999999999
Q ss_pred EEee
Q psy12803 464 LFES 467 (902)
Q Consensus 464 L~V~ 467 (902)
|.|.
T Consensus 73 l~V~ 76 (76)
T cd04978 73 VHVV 76 (76)
T ss_pred EEEC
Confidence 9873
No 53
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.18 E-value=6.9e-11 Score=100.66 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=54.1
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
++|.|.+.|+|.|.+.|+|++..+... .. .++|.|.++..+|+|.|+|+|+|..|..++++.|.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~---------~~------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK---------HS------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc---------CC------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 579999999999999999987666311 01 235999999999999999999999998877777765
Q ss_pred e
Q psy12803 467 S 467 (902)
Q Consensus 467 ~ 467 (902)
.
T Consensus 66 ~ 66 (67)
T cd05863 66 I 66 (67)
T ss_pred E
Confidence 3
No 54
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.18 E-value=9.8e-11 Score=102.98 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=57.7
Q ss_pred EEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 388 ~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
.|.|.+.|+|.|+|+|++++..+.........+..... ..+.++|.|.+++.+|+|.|+|+|+|.+|++++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINN--TEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecc--cceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37899999999999999988777543322222222111 12356799999999999999999999999999888764
No 55
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.17 E-value=9.2e-11 Score=101.60 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred eEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 386 ~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
.+.|.|.+.|.|.|.+.|++++..+.. ..++.+..... .++|.|.+++.+|+|.|+|.|.|.+|.++.++.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~--~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKL--SGRVQIETTAS-----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCC--CCeEEEEECCC-----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 478999999999999999998877633 23333332221 35699999999999999999999999999999887
Q ss_pred e
Q psy12803 466 E 466 (902)
Q Consensus 466 V 466 (902)
|
T Consensus 74 V 74 (74)
T cd05748 74 V 74 (74)
T ss_pred C
Confidence 5
No 56
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.17 E-value=1.9e-10 Score=104.89 Aligned_cols=86 Identities=22% Similarity=0.400 Sum_probs=64.6
Q ss_pred CEEEEcCceeeee---cCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CCCCe
Q psy12803 370 PQILIRNRRVGVP---IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISDFD 445 (902)
Q Consensus 370 P~i~~~p~~~~v~---~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~DsG 445 (902)
|.|+..+.++.+. +|+.++|.|.+.|.|.|+|+|++++..+......++... ++ .|.|.++. .+|+|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~---~g------~L~i~~~~~~~D~G 72 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI---DG------NLIISNPSEVKDSG 72 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee---CC------eEEEccCCccCcCE
Confidence 6788888876554 478999999999999999999998876643333333222 12 38999885 69999
Q ss_pred EEEEEEEeCCceeE-EEEEE
Q psy12803 446 TYRCISKNEVDIAK-GSLIL 464 (902)
Q Consensus 446 ~YtC~A~N~~G~~~-~s~~L 464 (902)
.|+|.|.|.+|... ..+.|
T Consensus 73 ~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 73 RYQCLATNSIGSILSREALL 92 (94)
T ss_pred EEEEEEEcCCCeEEeccEEE
Confidence 99999999999884 34443
No 57
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.16 E-value=2.4e-10 Score=104.11 Aligned_cols=86 Identities=21% Similarity=0.333 Sum_probs=66.0
Q ss_pred CEEEEcCceeeeecC---ceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CCCCe
Q psy12803 370 PQILIRNRRVGVPIG---RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISDFD 445 (902)
Q Consensus 370 P~i~~~p~~~~v~~G---~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~DsG 445 (902)
|.|...|.++.+.+| ++++|.|.+.|.|.|+++|++++..+......++.+.. ..|.|.++. .+|+|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---------g~L~I~~~~~~~D~G 72 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA---------GNLVINNPQKARDAG 72 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC---------CeEEEccCCccCcCE
Confidence 678888888877666 57999999999999999999988776433333443321 238998865 59999
Q ss_pred EEEEEEEeCCceeE-EEEEE
Q psy12803 446 TYRCISKNEVDIAK-GSLIL 464 (902)
Q Consensus 446 ~YtC~A~N~~G~~~-~s~~L 464 (902)
.|+|+|+|..|... ..+.|
T Consensus 73 ~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 73 SYQCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEEEcCcCcEEEEEEEE
Confidence 99999999999874 35544
No 58
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=1.4e-10 Score=100.81 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=56.8
Q ss_pred EEEEEEeeccCCceEEEEecCCeeee-cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
++|.|.+.|.|.|.|+|++++..... ....++.+.. .. ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-ED------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec-CC------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 57999999999999999998764322 1222332211 11 2499999999999999999999999999999998
Q ss_pred e
Q psy12803 466 E 466 (902)
Q Consensus 466 V 466 (902)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 7
No 59
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.15 E-value=1.4e-10 Score=100.21 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=60.0
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+++.|.|.+.+.|.|.+.|++++..+... .++.+. ..+ +|.|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~--~~~------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS--SRICIW--PDG------SLEILNVTKSDEGKYTCFAENFFGKANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC--CCEEEC--CCC------eEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence 678999999999999999999988765432 233322 222 3999999999999999999999999999998
Q ss_pred EEe
Q psy12803 464 LFE 466 (902)
Q Consensus 464 L~V 466 (902)
|.|
T Consensus 71 l~V 73 (73)
T cd04969 71 LSV 73 (73)
T ss_pred EEC
Confidence 875
No 60
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=2.1e-10 Score=99.31 Aligned_cols=74 Identities=27% Similarity=0.434 Sum_probs=59.4
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+.+.|.|.+.|.|.|.+.|+++++.+.... .+..... . .+|.|.+++.+|+|.|+|+|.|..|.++.++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~--~------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVYD--N------GTLDILITTVKDTGSFTCIASNAAGEATATVE 71 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEec--C------CEEEEEECChhhCEEEEEEEECCCCeEEEEEE
Confidence 6889999999999999999998666655433 2222221 2 24999999999999999999999999999888
Q ss_pred EEe
Q psy12803 464 LFE 466 (902)
Q Consensus 464 L~V 466 (902)
|.|
T Consensus 72 l~v 74 (74)
T cd05764 72 LHI 74 (74)
T ss_pred EEC
Confidence 875
No 61
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.14 E-value=2.8e-10 Score=102.70 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=63.3
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeee------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIE------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
|++++|.|.+.+.|.|.+.|++++..+.. ....++.+. .. .+|+|.+++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--QT------GDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--CC------CeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 68899999999999999999998765421 112233322 11 24999999999999999999999999
Q ss_pred eEEEEEEEeecCCC
Q psy12803 458 AKGSLILFESNAKT 471 (902)
Q Consensus 458 ~~~s~~L~V~~~p~ 471 (902)
..+++.|.|.+...
T Consensus 73 ~~~~~~l~V~~~~~ 86 (90)
T cd05726 73 ILTKAYLEVTDVIA 86 (90)
T ss_pred eEEEEEEEEeeccc
Confidence 99999999987543
No 62
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.13 E-value=2.6e-10 Score=101.68 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=61.3
Q ss_pred ceEEEEEEeeccCCc--eEEEEecCCeeeecC-CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803 385 RTATLECEVEAFPLS--VRYWEFIDGTLIEHD-GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461 (902)
Q Consensus 385 ~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~-~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s 461 (902)
++++|.|.+.+.|.| .+.|++++..+.... ..++....... ..++|.|.+++.+|+|.|+|.|.|.+|..+++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKD----SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEeccc----ccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 468999999999987 568998877664322 12221111100 12359999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy12803 462 LILFESNAK 470 (902)
Q Consensus 462 ~~L~V~~~p 470 (902)
+.|.|..+|
T Consensus 77 ~~l~V~~pP 85 (85)
T cd04970 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998754
No 63
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.13 E-value=2.3e-10 Score=103.38 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=58.4
Q ss_pred CceEEEEEEeeccCCceEEEEecC----CeeeecCCceEEEeec--CCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFID----GTLIEHDGVKYSISDV--DKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~----~~l~~~~~~~~~~~~~--~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
|++++|.|.+.|.|.|.|+|++++ ..+............. .........+|.|.+|+.+|+|.|+|+|.|.+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999863 2221111111111110 0000011235999999999999999999999999
Q ss_pred eEEEEEEEee
Q psy12803 458 AKGSLILFES 467 (902)
Q Consensus 458 ~~~s~~L~V~ 467 (902)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999873
No 64
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.12 E-value=2.7e-10 Score=101.66 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=63.0
Q ss_pred ceEEEEEEeeccC--CceEEEEecCCeeee-cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803 385 RTATLECEVEAFP--LSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461 (902)
Q Consensus 385 ~~v~L~C~a~g~P--~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s 461 (902)
+++.|.|.+.+.| .+.|.|++++..+.. ....++....... ..+.|.|.+++.+|+|+|+|.|+|.++..+++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~----~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQD----SAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCC----CCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 4689999998754 778999998877743 2333443321100 11249999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy12803 462 LILFESNAK 470 (902)
Q Consensus 462 ~~L~V~~~p 470 (902)
+.|.|..+|
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999999765
No 65
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.12 E-value=2.8e-10 Score=102.75 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=58.7
Q ss_pred CceEEEEEEeeccCCceEEEEecC----CeeeecCCceEEEeecCC--CceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFID----GTLIEHDGVKYSISDVDK--GSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~----~~l~~~~~~~~~~~~~~~--~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
|++++|.|.+.+.|.|.|+|++.. ..+............... ......++|.|.+++.+|+|.|+|+|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999853 222211111111111100 00011357999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy12803 458 AKGSLILFE 466 (902)
Q Consensus 458 ~~~s~~L~V 466 (902)
..+++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999887
No 66
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.12 E-value=7.1e-10 Score=100.62 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=65.2
Q ss_pred EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
+.+.|....+.+|+++.|.|.+.|.|. .+.|++.++..+..... +....... ..++|+|.+++.+|+|.|+|.|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~-~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A 76 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQ-ISVVQNDD----VRSTLTIYNANIEDAGIYKCVA 76 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCC-EEEEeCCC----CEEEEEEecCCcccCEEEEEEE
Confidence 455677788999999999999999974 99999755443332222 22222111 2457999999999999999999
Q ss_pred EeCCc-eeEEEEEEEe
Q psy12803 452 KNEVD-IAKGSLILFE 466 (902)
Q Consensus 452 ~N~~G-~~~~s~~L~V 466 (902)
.|.+| ..++++.|.|
T Consensus 77 ~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 77 TDAKGTESEATVNLKI 92 (92)
T ss_pred EcCCCCcceeEEEEEC
Confidence 99975 4577777754
No 67
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.10 E-value=2.6e-10 Score=98.16 Aligned_cols=70 Identities=27% Similarity=0.366 Sum_probs=56.5
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
+.|.|.+.|.|.|.+.|++++..+... .. ... .. ..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~--~~~-~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RT--KKL-NN------NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC-ce--eEE-cC------CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 579999999999999999988765432 11 111 11 134999999999999999999999999999999887
No 68
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.10 E-value=4.3e-10 Score=102.45 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=65.0
Q ss_pred EEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEecc-----CCCCCeE
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNV-----NISDFDT 446 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V-----~~~DsG~ 446 (902)
|...|.+..+.+|+++.|.|.+.+.|.|.+.|++++..+......++... ..++ |.|.++ +.+|+|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~--~~~~------l~i~~v~~~~~~~~D~G~ 73 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL--PNGS------LLITSVVHSKHNKPDEGF 73 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc--cCCe------EEEeeeeccCCCCCcCEE
Confidence 45677788889999999999999999999999998776643332222222 1222 666665 6899999
Q ss_pred EEEEEEeC-Ccee-EEEEEEEe
Q psy12803 447 YRCISKNE-VDIA-KGSLILFE 466 (902)
Q Consensus 447 YtC~A~N~-~G~~-~~s~~L~V 466 (902)
|+|.|.|. .|.. +..+.|.|
T Consensus 74 Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 74 YQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEEEEECCccCcEEEeeeEEeC
Confidence 99999999 9987 56776654
No 69
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.10 E-value=2.4e-10 Score=100.41 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=62.9
Q ss_pred eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~ 458 (902)
+.+..|+++.|.|.+.+.|.|.+.|++++..+....... . . ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~--~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--S--R-----KKKWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--e--c-----CceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 456789999999999999999999999887664322111 0 0 112459999999999999999999999999
Q ss_pred EEEEEEEe
Q psy12803 459 KGSLILFE 466 (902)
Q Consensus 459 ~~s~~L~V 466 (902)
++++.|.|
T Consensus 75 ~~~~~v~v 82 (82)
T cd05856 75 NATYKVDV 82 (82)
T ss_pred EEEEEEeC
Confidence 98888865
No 70
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.09 E-value=3.1e-10 Score=96.95 Aligned_cols=69 Identities=30% Similarity=0.441 Sum_probs=55.8
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
++|.|.+.|.|.|.+.|+++++.+.. .++... .. .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~--~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEIL--DD------KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC---CcEEEe--eC------CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999998765522 222222 11 24999999999999999999999999999988875
No 71
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.09 E-value=5.8e-10 Score=101.47 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCEEEEcCceeeeecC---ceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC-CCCC
Q psy12803 369 PPQILIRNRRVGVPIG---RTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN-ISDF 444 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G---~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~-~~Ds 444 (902)
.|.|...|.++.+.++ ..+.|.|.+.|.|.|+++|++++..+... ..++.+. . ..|.|.++. .+|+
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~-~~~~~~~---~------g~L~I~~~~~~~D~ 70 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT-NDRYSMV---G------GNLVINNPDKYKDA 70 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC-CCeEEEE---C------CEEEECcCCcCCCC
Confidence 4778888887766554 47999999999999999999987765322 2233322 1 239999985 6999
Q ss_pred eEEEEEEEeCCceeE-EEEEE
Q psy12803 445 DTYRCISKNEVDIAK-GSLIL 464 (902)
Q Consensus 445 G~YtC~A~N~~G~~~-~s~~L 464 (902)
|.|+|.|.|.+|... +.++|
T Consensus 71 G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 71 GRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEEEEeCcceEEEccEEE
Confidence 999999999999874 45554
No 72
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.09 E-value=3e-10 Score=97.88 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=55.7
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
+.|.|.+.|.|.|.+.|++++..+... .++.. .. .+|.|.+++.+|+|.|+|.|.|.+|..+.++.+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~--~~~~~---~~------~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTKK---SG------HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC--CEEEc---CC------CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 579999999999999999987665432 22221 11 24999999999999999999999998887777766
Q ss_pred e
Q psy12803 467 S 467 (902)
Q Consensus 467 ~ 467 (902)
.
T Consensus 70 ~ 70 (71)
T cd04976 70 V 70 (71)
T ss_pred E
Confidence 4
No 73
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.08 E-value=4.2e-10 Score=98.53 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=55.2
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE--EEEEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK--GSLIL 464 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~--~s~~L 464 (902)
++|.|.+.|.|.|.+.|++++..+... ..++.+.. .. .+|.|.+++.+|+|.|+|.|.|.+|... +.+.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~-~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG-QGNYSVSS-KE------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC-CccEEEeC-CC------CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 579999999999999999987765432 22333221 11 2499999999999999999999999874 45566
Q ss_pred Eee
Q psy12803 465 FES 467 (902)
Q Consensus 465 ~V~ 467 (902)
.|.
T Consensus 73 ~v~ 75 (77)
T cd05760 73 SII 75 (77)
T ss_pred EEe
Confidence 554
No 74
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.08 E-value=2.6e-10 Score=97.56 Aligned_cols=68 Identities=25% Similarity=0.456 Sum_probs=54.8
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L 464 (902)
|.|.|.+.|.|.|.+.|++++..+.. ..++.+.. . ++|.|.+++.+|+|.|+|.|.|.+|.++.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~--~~~~~~~~--~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTE--SGKFHISP--E------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCC--CCCEEECC--C------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999987765532 22333321 1 249999999999999999999999999988877
No 75
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.08 E-value=3.9e-10 Score=98.92 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=58.8
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+++.|.|.+.|.|.|.|.|++++..+... .++.+.... ..++|.|.+++.+|+|.|+|.|.|..|...+...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS--ARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC--CCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 688999999999999999999887665432 233332221 1346999999999999999999999999876665
Q ss_pred EEe
Q psy12803 464 LFE 466 (902)
Q Consensus 464 L~V 466 (902)
+.+
T Consensus 74 ~~~ 76 (78)
T cd05743 74 GIL 76 (78)
T ss_pred EEE
Confidence 543
No 76
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.08 E-value=1.2e-09 Score=100.16 Aligned_cols=94 Identities=18% Similarity=0.330 Sum_probs=72.6
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-CeE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-FDT 446 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-sG~ 446 (902)
||.+ .....+.+.+|++++|.|.+.+.|.| .|.|.+.+..+......++.+..... .....++|.|.++..+| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcE
Confidence 5666 45556789999999999999999987 57898877665444345666654321 12357889999998877 799
Q ss_pred EEEEEEeCCceeEEEEEE
Q psy12803 447 YRCISKNEVDIAKGSLIL 464 (902)
Q Consensus 447 YtC~A~N~~G~~~~s~~L 464 (902)
|.|.|.|.+|.++..++|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999988877
No 77
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.08 E-value=4.7e-10 Score=97.71 Aligned_cols=75 Identities=29% Similarity=0.481 Sum_probs=60.2
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
+.|.|.+.|.|.|.+.|++++..+......++.... .. ++|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~--~~-----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIA--NG-----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeC--CC-----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 479999999999999999988766543333333321 11 24999999999999999999999999999999988
Q ss_pred ec
Q psy12803 467 SN 468 (902)
Q Consensus 467 ~~ 468 (902)
.+
T Consensus 74 ~~ 75 (76)
T cd05736 74 ED 75 (76)
T ss_pred Ec
Confidence 63
No 78
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.07 E-value=2.5e-10 Score=102.65 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=57.4
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
...+.+..+.+|+++.|.|.+.|+|.|.++|+|++..+... ......++.|.|.+++.+|+|.|+|.|.|
T Consensus 5 ~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 5 NVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---AEISMSGAVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred EEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---CEEecCCCEEEECcCChhhCEEEEEEEEc
Confidence 34556788999999999999999999999999987654321 12233456899999999999999999999
No 79
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.07 E-value=3.7e-10 Score=98.03 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=56.7
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-KGSLILF 465 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~ 465 (902)
++|.|.+.|.|.|.|.|++++..+......++... ..+ .|.|.+++.+|+|.|+|.|.|..|.. +.++.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--RSG------ALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--CCc------EEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 57999999999999999998766543233344332 222 39999999999999999999999985 6777777
Q ss_pred e
Q psy12803 466 E 466 (902)
Q Consensus 466 V 466 (902)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 6
No 80
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.07 E-value=5.4e-10 Score=98.23 Aligned_cols=77 Identities=26% Similarity=0.357 Sum_probs=57.1
Q ss_pred CceEEEEEEeeccCCceEEEEecCC---eeeecCCc-eEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDG---TLIEHDGV-KYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAK 459 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~---~l~~~~~~-~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~ 459 (902)
|++++|.|.+.+.|.|.+.|+++.. .+...... ........ .++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 74 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN------IGQLVIYNAQPQDAGLYTCTARNSGGLLR 74 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc------ccEEEEccCCcccCEEEEEEEecCCceEE
Confidence 6889999999999999999998732 11111111 00011111 23599999999999999999999999999
Q ss_pred EEEEEEe
Q psy12803 460 GSLILFE 466 (902)
Q Consensus 460 ~s~~L~V 466 (902)
.++.|.|
T Consensus 75 ~~~~l~v 81 (81)
T cd05765 75 ANFPLSV 81 (81)
T ss_pred EEEEEeC
Confidence 9999875
No 81
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.07 E-value=7.5e-10 Score=100.32 Aligned_cols=86 Identities=27% Similarity=0.356 Sum_probs=65.4
Q ss_pred CEEEE--cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 370 PQILI--RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 370 P~i~~--~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
|.+.. .+.++.+.+|++++|.|.+.|. .|.|.|++++..+.. . ++.+.. .. .+|.|.+++.+|+|.|
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~--~~~~~~-~~------~~L~I~~v~~~D~G~Y 70 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-P--RLQLSN-DN------RTLTFNNVTRSDTGHY 70 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-C--CEEEeC-CC------CEEEECcCChhhCEEE
Confidence 45543 3446789999999999999999 999999988766532 2 222221 11 2499999999999999
Q ss_pred EEEEEeCCcee-EEEEEEEe
Q psy12803 448 RCISKNEVDIA-KGSLILFE 466 (902)
Q Consensus 448 tC~A~N~~G~~-~~s~~L~V 466 (902)
+|.|.|.+|.. +..+.|.|
T Consensus 71 ~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 71 QCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEcCCCCEEeeeEEEEe
Confidence 99999999986 45777766
No 82
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.06 E-value=6.7e-10 Score=98.81 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=63.3
Q ss_pred cCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803 375 RNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N 453 (902)
.|.++.+.+|+++.|.|.+ .+.|.|.+.|++++..+... ..++.+.. . ++|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~--~------~~L~I~~~~~~D~G~Y~C~a~N 72 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVD--D------GNLLIAEARKSDEGTYKCVATN 72 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEcc--C------CEEEEeECCcccCEEEEEEEEe
Confidence 3566788999999999998 79999999999987665432 22333221 2 2499999999999999999999
Q ss_pred CCcee-EEEEEEEe
Q psy12803 454 EVDIA-KGSLILFE 466 (902)
Q Consensus 454 ~~G~~-~~s~~L~V 466 (902)
..|.. +..+.|.|
T Consensus 73 ~~G~~~s~~~~l~V 86 (86)
T cd05724 73 MVGERESAAARLSV 86 (86)
T ss_pred ccCceeeeeEEEEC
Confidence 99986 45555543
No 83
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.06 E-value=5.6e-10 Score=98.23 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=62.4
Q ss_pred ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
....+.+|+.+.|.|.+.+. .+.+.|++++..+.. ..++.+.. . +|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~--~~~~~~~~---~------~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE--NNRTRITG---E------EVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC--CceEEEeC---C------EEEECCCChhhCEEEEEEEeCCCC
Confidence 45678899999999999986 578999998866643 22333321 1 399999999999999999999999
Q ss_pred eeEEEEEEEe
Q psy12803 457 IAKGSLILFE 466 (902)
Q Consensus 457 ~~~~s~~L~V 466 (902)
.....+.|.|
T Consensus 70 ~~~~~~~v~V 79 (79)
T cd04973 70 SDTTYFSVNV 79 (79)
T ss_pred cccEEEEEeC
Confidence 9888887765
No 84
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.05 E-value=6.1e-10 Score=95.45 Aligned_cols=68 Identities=15% Similarity=0.339 Sum_probs=53.5
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
|+++.|.|.+.|.|.|.|.|++++..+.. ..++.. . .+.|.|.++. |+|.|+|.|.|.+|..++++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~--~~~~~~---~------~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK--EDEMPV---G------RNVLELTNIY--ESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC--ccceec---C------ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence 67899999999999999999998876532 222211 1 1248999874 899999999999999988887
Q ss_pred E
Q psy12803 464 L 464 (902)
Q Consensus 464 L 464 (902)
|
T Consensus 68 l 68 (69)
T cd05739 68 V 68 (69)
T ss_pred E
Confidence 6
No 85
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.05 E-value=1.3e-09 Score=106.64 Aligned_cols=109 Identities=19% Similarity=0.347 Sum_probs=80.5
Q ss_pred cEEEEeeeeecCceeEEeecC--------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCee
Q psy12803 347 TLNFTRINRINMGAYMCLADN--------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTL 410 (902)
Q Consensus 347 sL~I~~Vt~~DsG~YtC~A~N--------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l 410 (902)
+|+|.+++.+|+|.|.|.+.+ .+|.+...+......+|+.++|.|.+.+. |. +.|.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 699999999999999999987 56666665555555578999999999986 54 489999987542
Q ss_pred ee----cCCceE-EEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 411 IE----HDGVKY-SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 411 ~~----~~~~~~-~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
.. ...... ......++++...+.|.|..-...+...|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 111111 2334566788888999998766666779999998754
No 86
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.04 E-value=3.9e-10 Score=96.95 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=54.0
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
+.|.|.+.|.|.|.+.|++++..+.. ..++. . ...|.|.++..+|+|.|+|.|.|.+|..+.+.++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~--~~~~~----~------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVL--NHTFK----R------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC--CCEEc----c------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 47999999999999999998877643 22211 1 124999999999999999999999998776666654
Q ss_pred e
Q psy12803 467 S 467 (902)
Q Consensus 467 ~ 467 (902)
.
T Consensus 69 ~ 69 (70)
T cd05864 69 V 69 (70)
T ss_pred E
Confidence 3
No 87
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.04 E-value=6.6e-10 Score=95.09 Aligned_cols=70 Identities=29% Similarity=0.403 Sum_probs=56.1
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
+.|.|.+.|.|.|.+.|++++..+.. . +.... .. ..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~--~~~~~-~~------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA-D--RTKFE-NF------NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC-C--ceeEe-cC------CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 57999999999999999998866532 1 11111 11 235999999999999999999999999999998877
No 88
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.03 E-value=3.6e-10 Score=103.85 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=58.6
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+..+.++.+.+|+++.|.|.+.|.|.+++.|+|++..+.......... ...+.|+|.+++++|+|.|+|.|.|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 4 IQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred EECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 445677899999999999999999999999999876654332211111 2346899999999999999999999
No 89
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.02 E-value=9.2e-10 Score=100.36 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=64.0
Q ss_pred ceeeeecCceEEEEEEeec-----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 377 RRVGVPIGRTATLECEVEA-----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g-----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
....+.+|+.+.|.|.+.+ .|.+.|.|++++..+........++... . ..|.|.++..+|+|.|+|.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~------~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ-K------DLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec-C------CeEEEccCCcccCeEEEEEE
Confidence 3566889999999999998 6899999999886543211111111111 1 24999999999999999999
Q ss_pred EeCCceeEEEEEEEe
Q psy12803 452 KNEVDIAKGSLILFE 466 (902)
Q Consensus 452 ~N~~G~~~~s~~L~V 466 (902)
+|..|..+.++.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999999999998875
No 90
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.01 E-value=3.6e-10 Score=98.03 Aligned_cols=61 Identities=31% Similarity=0.559 Sum_probs=51.2
Q ss_pred cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
||+++.|.|.+.|+|.|.|+|+|++..+... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 61 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRVALHDQGQYECQAVN 61 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEccCCeEEEeeCCHHhCEEEEEEEEe
Confidence 6999999999999999999999977654322 223345567999999999999999999999
No 91
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.01 E-value=2.3e-09 Score=95.35 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=60.1
Q ss_pred CceEEEEEEeecc--CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEE
Q psy12803 384 GRTATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGS 461 (902)
Q Consensus 384 G~~v~L~C~a~g~--P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s 461 (902)
|+++.|.|.+.+. |.|.+.|++++..+.......... .........++|.|.+++.+|+|.|+|.|.|..|..+++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQ--SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccc--ccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 7899999999999 889999988765442111100000 111122356789999999999999999999999999998
Q ss_pred EEEEe
Q psy12803 462 LILFE 466 (902)
Q Consensus 462 ~~L~V 466 (902)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 88876
No 92
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.99 E-value=5.8e-10 Score=101.50 Aligned_cols=69 Identities=23% Similarity=0.459 Sum_probs=54.7
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..++.+.+|+++.|.|.+.|.|.|.+.|+|++..+... ..+... ...+.|+|.+++.+|+|.|+|.|.|
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 79 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAEN 79 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEc
Confidence 34567899999999999999999999999977654332 122222 2345799999999999999999999
No 93
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.99 E-value=4.7e-10 Score=101.67 Aligned_cols=70 Identities=17% Similarity=0.413 Sum_probs=55.3
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec--cCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+..+++.+|+++.|.|.+.|.|.|.+.|+|++..+........... ...+|.|.+++.+|+|.|+|.|.|
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 79 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKN 79 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEE
Confidence 4457899999999999999999999999998766543332222222 123799999999999999999998
No 94
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.99 E-value=7.4e-10 Score=101.36 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=54.0
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceecc----CCcEEEEeeeeecCceeEEeecCC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVA----SSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~----~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
.+....+.+|++++|.|.+.|.|. |.++|++.++..+.....+..... .++|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 345567899999999999999995 799999844443332222222221 258999999999999999999993
No 95
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.99 E-value=6.5e-10 Score=100.72 Aligned_cols=73 Identities=19% Similarity=0.468 Sum_probs=57.3
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+..++++.+.+|+++.|.|.+.|+|.|.+.|+|++..+.......... ...++|.|.+++.+|+|.|+|.|.|
T Consensus 7 ~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred cccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 445677899999999999999999999999999876543322211111 1235899999999999999999998
No 96
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.98 E-value=4.8e-10 Score=97.81 Aligned_cols=62 Identities=27% Similarity=0.478 Sum_probs=50.9
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.|.|.|+++|+|++..+............+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 62 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARN 62 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEEC
Confidence 78999999999999999999997765443322223344567999999999999999999999
No 97
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.98 E-value=5.6e-10 Score=96.83 Aligned_cols=60 Identities=25% Similarity=0.575 Sum_probs=51.1
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+++.|.|.+.|.|.|+|+|+|++..+.. ..+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~--~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N 60 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN--NSRISIWDDGSLEILNITKLDEGSYTCFAEN 60 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEeccc--CCCEEEcCCCEEEECcCChhHCEEEEEEEEC
Confidence 78999999999999999999997765432 2344555678999999999999999999999
No 98
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.97 E-value=2.3e-09 Score=92.73 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=55.2
Q ss_pred EEEEEEeec-cCCceEEEEecCCeeeecCCce-EEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803 387 ATLECEVEA-FPLSVRYWEFIDGTLIEHDGVK-YSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464 (902)
Q Consensus 387 v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~-~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L 464 (902)
+.|.|.+.+ .|.|.+.|++++..+....... +.+... ...++|.|.+++.+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK-----KKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEec-----CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 479999999 9999999999877665433222 112111 123569999999999999999999999998877653
No 99
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.97 E-value=1.7e-09 Score=95.79 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=59.4
Q ss_pred EEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
|...|.++.+.+|+++.|.|.+.|.|.| +|.|++++..+.. . . ... .+.|.|..+ .|+|.|.|+
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~--~----~~~-----~s~L~i~~~--~d~g~Y~C~ 65 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--P--P----APS-----PSVLNVPGL--NETSKFSCE 65 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--C--C----CCC-----CCEEEEccc--cCCeEEEEE
Confidence 3456778899999999999999999999 7999998766532 0 0 011 134999887 478999999
Q ss_pred EEeCCceeE-EEEEE
Q psy12803 451 SKNEVDIAK-GSLIL 464 (902)
Q Consensus 451 A~N~~G~~~-~s~~L 464 (902)
|+|.+|... ..++|
T Consensus 66 A~N~~G~~~s~~a~~ 80 (81)
T cd05749 66 AHNAKGVTTSRTGTV 80 (81)
T ss_pred EEeccCcEEeeeEEe
Confidence 999999764 34444
No 100
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.97 E-value=7.1e-10 Score=102.45 Aligned_cols=68 Identities=25% Similarity=0.389 Sum_probs=54.5
Q ss_pred CcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceecc-------CCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA-------SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~-------~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+.+|+++.|.|.+.| .|.|.+.|+|++..+..... ...... .++|.|.++..+|+|.|+|.|.|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLT-EIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcc-eeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 4578999999999999999 99999999998765542222 121211 36899999999999999999999
No 101
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.96 E-value=8.6e-10 Score=98.94 Aligned_cols=69 Identities=26% Similarity=0.499 Sum_probs=57.3
Q ss_pred ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.++.+.+|+++.|.|.+.|.|.|.++|+|++..+..... ....++.|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 6 VFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE---ISMSGAVLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred ECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccE---EEEeCCEEEECCCCcccCEEEEEEEEE
Confidence 345678899999999999999999999999998765543221 224567999999999999999999998
No 102
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.95 E-value=3.9e-09 Score=95.40 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=61.3
Q ss_pred CEEEEcCceeeeec---CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC-CCCe
Q psy12803 370 PQILIRNRRVGVPI---GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFD 445 (902)
Q Consensus 370 P~i~~~p~~~~v~~---G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~-~DsG 445 (902)
|.|...+.++.+.+ +.++.|.|.+.|.|.|.++|++++..+......++... . ..|.|.++.. +|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~---~------~~L~i~~~~~~~d~G 72 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV---G------GNLVISNPSKAKDAG 72 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE---C------CEEEEecCCccCCCE
Confidence 67777777765544 46799999999999999999988766533233333321 1 2399998874 9999
Q ss_pred EEEEEEEeCCceeEE
Q psy12803 446 TYRCISKNEVDIAKG 460 (902)
Q Consensus 446 ~YtC~A~N~~G~~~~ 460 (902)
.|+|+|+|.+|...+
T Consensus 73 ~Y~C~a~N~~G~~~S 87 (91)
T cd04967 73 RYQCLASNIVGTVLS 87 (91)
T ss_pred EEEEEEEcCCCEEEe
Confidence 999999999998754
No 103
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.95 E-value=9.9e-10 Score=98.41 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=54.5
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec---cCCcEEEEeeeeecCceeEEeecC
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV---ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.+.+|+++.|.|.+.|.|.|.+.|+|++..+..... +.... ..++|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~-r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N 73 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEG-RVRVESYKDLSSFVIEGAEREDEGVYTITVTN 73 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCC-eEEEEEcCCeEEEEECCCccCcCEEEEEEEEe
Confidence 47789999999999999999999999998766543221 22221 235899999999999999999998
No 104
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.94 E-value=9.2e-09 Score=93.95 Aligned_cols=90 Identities=19% Similarity=0.342 Sum_probs=74.0
Q ss_pred CceeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 376 NRRVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
...+.|.+|+++.|.|.++++|.|+ +.|.+++..+....... ........+++.++|.|.+++.+|+|.|+|.|+|+
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~--~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~ 87 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHY--VKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS 87 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccce--eEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence 3457899999999999999999997 99998877654333322 22233345679999999999999999999999999
Q ss_pred CceeEEEEEEEee
Q psy12803 455 VDIAKGSLILFES 467 (902)
Q Consensus 455 ~G~~~~s~~L~V~ 467 (902)
....+.++.|.|+
T Consensus 88 ~~~~s~tF~l~v~ 100 (101)
T cd05860 88 DASASVTFNVYVN 100 (101)
T ss_pred CCeEEEEEEEEEe
Confidence 9999999999875
No 105
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.93 E-value=3.2e-09 Score=93.25 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=52.8
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee-E
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA-K 459 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~-~ 459 (902)
|+|.|.+.|+|.|.+.|++.++..... ...++... . ..+|.|.++..+|+|.|+|.|.|..|.+ +
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--S------NGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--c------CCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 579999999999999999875432110 11122221 1 2359999999999999999999999987 6
Q ss_pred EEEEEEe
Q psy12803 460 GSLILFE 466 (902)
Q Consensus 460 ~s~~L~V 466 (902)
.++.|.|
T Consensus 73 ~~~~l~~ 79 (79)
T cd05734 73 KSMVLTV 79 (79)
T ss_pred eEEEEeC
Confidence 6666654
No 106
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.93 E-value=3.6e-09 Score=96.39 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=60.0
Q ss_pred ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEee-----eeecCceeEEeecCC-C
Q psy12803 296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRI-----NRINMGAYMCLADNV-P 369 (902)
Q Consensus 296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~V-----t~~DsG~YtC~A~N~-~ 369 (902)
..|.+..+.+|+++.|.|.+.+.|.|.++|+|++..+......+.....+++|.|.++ +.+|+|.|+|.|.|. .
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 3566778899999999999999999999999977665433332344455678888887 589999999999996 5
Q ss_pred CEE
Q psy12803 370 PQI 372 (902)
Q Consensus 370 P~i 372 (902)
..+
T Consensus 84 G~~ 86 (95)
T cd05722 84 GSI 86 (95)
T ss_pred CcE
Confidence 444
No 107
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.93 E-value=2.4e-09 Score=98.26 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=55.2
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC-ccccc----CCccceec---cCCcEEEEeeeeecCceeEEeec
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN-KPITL----GSWKDSAV---ASSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~-~~~~~----~~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
+..+.++++.+|++++|.|.+.|.|.|.|.|+|... ..+.. ...+.... ...+|.|.+++.+|+|.|+|.|.
T Consensus 5 i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 84 (98)
T cd05870 5 IIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAA 84 (98)
T ss_pred EEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEe
Confidence 345667899999999999999999999999999532 22111 11122222 23589999999999999999999
Q ss_pred C
Q psy12803 367 N 367 (902)
Q Consensus 367 N 367 (902)
|
T Consensus 85 N 85 (98)
T cd05870 85 S 85 (98)
T ss_pred c
Confidence 9
No 108
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.93 E-value=2.4e-09 Score=95.17 Aligned_cols=69 Identities=25% Similarity=0.463 Sum_probs=56.5
Q ss_pred CCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.++.+.+|+++.|.|.+ .+.|.|.+.|+|++..+... ..+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 72 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATN 72 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEe
Confidence 456789999999999998 78999999999977654432 2233344467999999999999999999999
No 109
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.92 E-value=1.3e-08 Score=90.80 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=58.2
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc--eeEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD--IAKGS 461 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G--~~~~s 461 (902)
|++++|.|.+.+.|.+.+.|++.++............. .......++|.|.+++.+|+|.|+|.|.|..+ ..+.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVK---VPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEe---cCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 78999999999999999999876653211000000111 11122456899999999999999999999876 66788
Q ss_pred EEEEee
Q psy12803 462 LILFES 467 (902)
Q Consensus 462 ~~L~V~ 467 (902)
+.|.|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 888775
No 110
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.91 E-value=1.3e-09 Score=94.69 Aligned_cols=62 Identities=29% Similarity=0.495 Sum_probs=51.2
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.|.|.|.|.|++++..+.............+.|.|.+++.+|+|.|+|.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N 62 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASN 62 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEc
Confidence 78999999999999999999997765543332223445567999999999999999999999
No 111
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.91 E-value=2.6e-09 Score=97.36 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=55.4
Q ss_pred eecCCcEEEE---cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecCCC
Q psy12803 295 IFSSSPIVVR---EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADNVP 369 (902)
Q Consensus 295 i~~~~~v~v~---eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N~~ 369 (902)
+..+.++.+. +|++++|.|.+.|.|.|+|+|+|++..+..... ......+++|.|.++. .+|+|.|+|.|.|..
T Consensus 5 ~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~-~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05848 5 VQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESD-YRYSLIDGNLIISNPSEVKDSGRYQCLATNSI 82 (94)
T ss_pred EECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCC-ceEEeeCCeEEEccCCccCcCEEEEEEEEcCC
Confidence 3445555443 578999999999999999999998765533222 2333456789999985 699999999999933
No 112
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.91 E-value=1.6e-09 Score=96.79 Aligned_cols=68 Identities=25% Similarity=0.503 Sum_probs=56.9
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+... ......++.|.|.+++.+|+|.|+|.|.|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE---NRIEVEAGDLRITKLSLSDSGMYQCVAEN 72 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC---CeEEEeCCEEEEeeCCHHHCEEEEEEEEC
Confidence 456788999999999999999999999999987654321 12334567899999999999999999998
No 113
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.91 E-value=1.5e-09 Score=97.82 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=55.4
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc-ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK-DSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.++.+.+|+.+.|.|.+.|+|.|.+.|++++..+....... .......+|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N 77 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN 77 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEEC
Confidence 3455779999999999999999999999999876543222111 1112335899999999999999999998
No 114
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.91 E-value=1.1e-09 Score=95.59 Aligned_cols=62 Identities=31% Similarity=0.501 Sum_probs=49.4
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.|+|.|+|+|+|++..+............++.|.|.+++.+|+|.|+|.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N 62 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASN 62 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEc
Confidence 78999999999999999999997765432222122233456899999999999999999999
No 115
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.91 E-value=8.2e-09 Score=91.11 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=63.1
Q ss_pred eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~ 458 (902)
+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ...... .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRI--GGYKVR----KKKWTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCce--eEEEcc----CcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence 45778999999999999999999999887665432211 111111 123469999999999999999999999999
Q ss_pred EEEEEEEe
Q psy12803 459 KGSLILFE 466 (902)
Q Consensus 459 ~~s~~L~V 466 (902)
+.++.|.|
T Consensus 78 ~~~~~l~v 85 (85)
T cd05729 78 NHTYKVDV 85 (85)
T ss_pred EEEEEEeC
Confidence 98888864
No 116
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.90 E-value=2.1e-09 Score=97.54 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=55.1
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.++.+.+|+++.|.|.+.|.|. .+.|+++++..+... .+.....++ +|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~-~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS-QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC-CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence 456688999999999999999998 899998665544332 233333333 899999999999999999999
No 117
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.89 E-value=7.7e-09 Score=90.61 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=49.0
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccC----CCCCeEEEEEEEeCCceeEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN----ISDFDTYRCISKNEVDIAKG 460 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~----~~DsG~YtC~A~N~~G~~~~ 460 (902)
+.|.|.+.|+|.|.|+|++++..+......++.+. ... ++|.|..+. .+|+|.|+|.|+|.+|.+.+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-~~~------~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-RRS------GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-CCC------ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 47999999999999999998865533333344332 122 248888764 24799999999999998754
No 118
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.89 E-value=4.3e-09 Score=92.12 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=49.8
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC----CCCeEEEEEEEeCCceeEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI----SDFDTYRCISKNEVDIAKG 460 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~----~DsG~YtC~A~N~~G~~~~ 460 (902)
++|.|.+.|.|.|+|+|++++..+......++... ...+ +|.|.+++. +|+|.|+|+|+|.+|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~~g------~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-PDSG------TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-CCCC------EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 57999999999999999998776643333333322 2222 488888754 7999999999999998743
No 119
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.89 E-value=2.1e-09 Score=97.34 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=54.3
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
+.++.+.+|++|+|.|.+.|. .|.+.|+|++..+.. .. ......+++|+|.+++++|+|.|+|.|.|.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNE 77 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CC-EEEeCCCCEEEECcCChhhCEEEEEEEEcC
Confidence 345789999999999999999 999999998765432 11 112234468999999999999999999993
No 120
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.89 E-value=5e-09 Score=95.38 Aligned_cols=73 Identities=32% Similarity=0.565 Sum_probs=53.7
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc---CCccceeccCCcEEEEee-----eeecCceeEEeec
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL---GSWKDSAVASSTLNFTRI-----NRINMGAYMCLAD 366 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~~sL~I~~V-----t~~DsG~YtC~A~ 366 (902)
+..+.++.+.+|++++|.|.+.|.|.|.+.|+|++..+... .........++.+.+..+ +.+|+|.|+|.|.
T Consensus 5 ~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~ 84 (100)
T cd07693 5 VEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAH 84 (100)
T ss_pred EecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence 34566788999999999999999999999999987655431 112223334444443333 6899999999999
Q ss_pred C
Q psy12803 367 N 367 (902)
Q Consensus 367 N 367 (902)
|
T Consensus 85 N 85 (100)
T cd07693 85 N 85 (100)
T ss_pred c
Confidence 9
No 121
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.88 E-value=7.7e-09 Score=90.63 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=49.1
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCC----CCCeEEEEEEEeCCceeEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI----SDFDTYRCISKNEVDIAKG 460 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~----~DsG~YtC~A~N~~G~~~~ 460 (902)
+.|.|.+.|.|.|+|+|++++..+......++... ...+ +|.|..+.. .|.|.|+|.|.|.+|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g------~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTG------TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-CCCc------eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 57999999999999999998876633333333322 2222 388887764 3789999999999998754
No 122
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.87 E-value=1.4e-09 Score=94.83 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=45.9
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceec--cCC--cEEEEeeeeecCceeEEeecCC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV--ASS--TLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~~--sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
|.|.|.+.|.|.|.|+|+|++..+..... +.... ..+ +|.|.+++.+|+|.|+|.|.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~-r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~ 63 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTD-RISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNE 63 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCC-eEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcC
Confidence 57999999999999999997765543222 32222 222 7999999999999999999993
No 123
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.87 E-value=5.5e-09 Score=90.26 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=51.6
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
+.|.|.++|.|.|++.|++++..+.. ...++.. . . .+|.|.+++.+|+|.|+|.|+|..........+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-~~~~~~~--~-~------~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE-KCSRYHV--D-G------YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC-CCcEEEe--C-C------CEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999999999999999866543 2223322 1 1 1399999999999999999999876555444443
No 124
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.87 E-value=2.4e-09 Score=97.12 Aligned_cols=70 Identities=19% Similarity=0.416 Sum_probs=55.2
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccC--CcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--STLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|..+++.+|+++.|.|.+.+.|.|.+.|+|++..+............+ .+|.|.+++.+|+|.|+|.|.|
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 79 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKN 79 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 456889999999999999999999999999876654332211111222 3799999999999999999998
No 125
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.87 E-value=8.2e-09 Score=89.88 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=53.7
Q ss_pred EEEEEEeec-cCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 387 ATLECEVEA-FPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 387 v~L~C~a~g-~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
+.|.|.+.+ .|.+.+.|++++..+.... ..++.+.... ..++|.|.+++.+|+|.|+|+|.|..|.++.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKK-----KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCC-----cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 6888999999877664322 1222222111 2356999999999999999999999999888765
Q ss_pred E
Q psy12803 464 L 464 (902)
Q Consensus 464 L 464 (902)
+
T Consensus 76 ~ 76 (76)
T cd05895 76 V 76 (76)
T ss_pred C
Confidence 3
No 126
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.87 E-value=2.3e-09 Score=96.08 Aligned_cols=73 Identities=26% Similarity=0.574 Sum_probs=58.3
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+........... ...+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 4 TKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred EEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 4456779999999999999999999999999998665544333222222 345899999999999999999987
No 127
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.84 E-value=3.9e-09 Score=96.03 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=54.9
Q ss_pred ecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC---Cccceec---cCCcEEEEeeeeecCceeEEeecC
Q psy12803 296 FSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAV---ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 296 ~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~---~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.... ..+.... ..+.|+|.+++.+|+|.|+|.|.|
T Consensus 6 ~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 83 (96)
T cd05732 6 TYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASN 83 (96)
T ss_pred eecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEe
Confidence 34556889999999999999999999999999764432211 1111111 224899999999999999999999
No 128
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.84 E-value=2e-08 Score=91.69 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=60.6
Q ss_pred CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC------CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD------GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
..++.+.+|+++.|.|.+.+.|.|.|.|++.+..++... ..++.+..... ...+|.|.+|+.+|+|.|+|
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~nV~~~D~G~YtC 79 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP----TELIISISNVQLSDEGEYTC 79 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC----ceEEEEECCCCcccCEEEEE
Confidence 356789999999999999999999999998876543211 12222211111 13469999999999999999
Q ss_pred EEEeCCceeEEEEEEEe
Q psy12803 450 ISKNEVDIAKGSLILFE 466 (902)
Q Consensus 450 ~A~N~~G~~~~s~~L~V 466 (902)
.+.. .-..++.+.|.|
T Consensus 80 ~~~t-~~~~~~~~~~~v 95 (95)
T cd05882 80 SIFT-MPVRTAKATVTV 95 (95)
T ss_pred EEEe-eccccEEEEEEC
Confidence 9988 334445555543
No 129
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.84 E-value=5.5e-09 Score=95.80 Aligned_cols=75 Identities=27% Similarity=0.334 Sum_probs=55.8
Q ss_pred ceeecCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccC-------CcEEEEeeeee-cCceeEE
Q psy12803 293 EHIFSSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVAS-------STLNFTRINRI-NMGAYMC 363 (902)
Q Consensus 293 ~~i~~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~-------~sL~I~~Vt~~-DsG~YtC 363 (902)
+.+..+..+.+.+|+++.|.|.+.|.|.| .|.|++++..+......+..+... ++|+|.+++.+ |.|.|+|
T Consensus 3 p~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C 82 (98)
T cd05758 3 PIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC 82 (98)
T ss_pred CeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence 34445566778999999999999999999 599999776544322222222211 37999999995 4999999
Q ss_pred eecC
Q psy12803 364 LADN 367 (902)
Q Consensus 364 ~A~N 367 (902)
.|.|
T Consensus 83 ~A~N 86 (98)
T cd05758 83 TAWN 86 (98)
T ss_pred EEEc
Confidence 9999
No 130
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.84 E-value=6.9e-09 Score=94.55 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=55.1
Q ss_pred eecCCcEEEEcC---CeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecCCC
Q psy12803 295 IFSSSPIVVREG---DNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADNVP 369 (902)
Q Consensus 295 i~~~~~v~v~eG---e~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N~~ 369 (902)
+..|.++.+.+| ++++|.|.+.|+|.|+++|++++..+..... ......+++|.|.++. .+|+|.|+|.|.|..
T Consensus 5 ~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05850 5 EEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE-SRYTLVAGNLVINNPQKARDAGSYQCLAINRC 82 (94)
T ss_pred EECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC-ceEEEECCeEEEccCCccCcCEEEEEEEEcCc
Confidence 345566666565 6899999999999999999998766532222 2233446789998865 599999999999933
No 131
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.84 E-value=7.6e-09 Score=90.93 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=55.2
Q ss_pred CEEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 370 PQILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
|.++..|....+.+|++++|.|.+.+.|.+ .+.|++++..+.. .. .+|.|.++ .+|+|.|+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----------~~------~~l~i~~~-~~dsG~Y~ 62 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----------TT------NSYRIRAA-NNDSGEYR 62 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------cC------CeEEEeec-ccCCEEeE
Confidence 567788888899999999999999998864 7999998765421 11 23999999 99999999
Q ss_pred EEEEeC
Q psy12803 449 CISKNE 454 (902)
Q Consensus 449 C~A~N~ 454 (902)
|.|.|.
T Consensus 63 C~a~~~ 68 (78)
T cd05752 63 CQTQGS 68 (78)
T ss_pred EECCCC
Confidence 999886
No 132
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.83 E-value=2.6e-09 Score=92.75 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=48.5
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++|.|.+.|.|.|.|+|+|++..+......+.....++.|.|.+++.+|+|.|+|.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N 59 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATN 59 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEEC
Confidence 47999999999999999998765433233344555677899999999999999999999
No 133
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.83 E-value=1.2e-08 Score=90.76 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=63.1
Q ss_pred EcCceeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803 374 IRNRRVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452 (902)
Q Consensus 374 ~~p~~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~ 452 (902)
..+..+.+.+|++++|.|.+.+ .|.+.+.|++++..+.. . .. .. .+.|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~--~~---~~------~~~L~I~~v~~~DsG~Y~C~a~ 72 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--R--AM---DF------NGILTIRNVQLSDAGTYVCTGS 72 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--c--cc---cc------CCEEEECCCCHHHCEEEEEEEe
Confidence 4566778999999999999975 68899999998765321 1 00 11 2349999999999999999999
Q ss_pred eCCceeEEEEEEE
Q psy12803 453 NEVDIAKGSLILF 465 (902)
Q Consensus 453 N~~G~~~~s~~L~ 465 (902)
|..|..++++.|+
T Consensus 73 n~~g~~~~~~~l~ 85 (85)
T cd05754 73 NMLDTDEATATLY 85 (85)
T ss_pred ccCCeEeEEEEEC
Confidence 9999999988873
No 134
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.83 E-value=5.9e-09 Score=94.87 Aligned_cols=70 Identities=17% Similarity=0.365 Sum_probs=52.6
Q ss_pred cCCcEEEEcC---CeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeee-eecCceeEEeecCC
Q psy12803 297 SSSPIVVREG---DNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRIN-RINMGAYMCLADNV 368 (902)
Q Consensus 297 ~~~~v~v~eG---e~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt-~~DsG~YtC~A~N~ 368 (902)
.|.++.+.++ ..+.|.|.+.|+|.|+++|+|++..+..... .....++.|.|.++. .+|+|.|+|.|.|.
T Consensus 7 ~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~--~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 7 QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND--RYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC--eEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 3444555444 4899999999999999999998765432222 223456799999985 68999999999993
No 135
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.83 E-value=6.2e-09 Score=94.47 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=53.1
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.++++.+|+++.|.|.+.|.|. .+.|++.++..+........... .++|+|.+++.+|+|.|+|.|.|
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 355688999999999999999874 99999855554333222222221 24899999999999999999998
No 136
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.82 E-value=4e-09 Score=91.14 Aligned_cols=60 Identities=23% Similarity=0.526 Sum_probs=50.4
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+++.|.|.+.|.|.|.++|+|++..+... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 60 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS--SRICIWPDGSLEILNVTKSDEGKYTCFAEN 60 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC--CCEEECCCCeEEEccCChhHCEEEEEEEEC
Confidence 789999999999999999999987654332 233445567899999999999999999999
No 137
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.82 E-value=4.1e-09 Score=97.39 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=54.1
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce-------eccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-------AVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-------~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
...+..|+.+.|.|.+.|.|.|.++|+|++..+......... ....++|.|.+++.+|+|.|+|.|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 467889999999999999999999999987665432211111 011358999999999999999999993
No 138
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.82 E-value=2.4e-09 Score=93.34 Aligned_cols=59 Identities=27% Similarity=0.416 Sum_probs=46.2
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccC--C--cEEEEeeeeecCceeEEeecCC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS--S--TLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~--~--sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
|+|.|.+.|.|.|.|+|+|++..+... ..+.....+ + +|.|.+++.+|+|.|+|.|.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 63 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNE 63 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 579999999999999999987665432 223333222 2 6999999999999999999993
No 139
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.82 E-value=5.7e-09 Score=92.41 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=51.8
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCC-ceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKP-SIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.++++.+.+|+++.|.|.+.|.|.| +|.|+|++..+.. . .....+.|.|..+ .|+|.|+|+|+|
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~---~~~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--P---PAPSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--C---CCCCCCEEEEccc--cCCeEEEEEEEe
Confidence 4667889999999999999999999 7999998765432 1 1223468999887 588999999999
No 140
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.81 E-value=4.2e-09 Score=92.19 Aligned_cols=60 Identities=27% Similarity=0.438 Sum_probs=46.8
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
|+|.|.+.|.|.|.|+|+|++..+.............++|.|.+++.+|+|.|+|.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeC
Confidence 589999999999999999987654332221122234568999999999999999999993
No 141
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.81 E-value=7.3e-09 Score=93.41 Aligned_cols=62 Identities=31% Similarity=0.643 Sum_probs=50.1
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccc------cCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPIT------LGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~------~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.+.|.|.+.|+|++...+. ....+.....+++|+|.+++.+|+|.|+|.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N 68 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLN 68 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEc
Confidence 78999999999999999999998765421 112233444567899999999999999999999
No 142
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.80 E-value=6.8e-09 Score=92.23 Aligned_cols=67 Identities=21% Similarity=0.420 Sum_probs=53.1
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCcc--ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK--DSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~--~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.+|+++.|.|.+.|.|.|.+.|+|++..+....... .......+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 72 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence 457899999999999999999999999876654322211 1122345799999999999999999998
No 143
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.80 E-value=5.2e-09 Score=90.08 Aligned_cols=58 Identities=26% Similarity=0.525 Sum_probs=48.2
Q ss_pred eEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 308 NVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 308 ~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+|+|.|.+.|.|.|.++|+|++..+.... +.....++.|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~--~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N 58 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSD--YFKIVKEHNLQVLGLVKSDEGFYQCIAEN 58 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCC--CEEEEecCCEEEEcCCcccCEEEEEEEEc
Confidence 47899999999999999999887654322 23344567899999999999999999999
No 144
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.80 E-value=2.7e-08 Score=89.44 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=62.9
Q ss_pred CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecC--CceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803 376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHD--GVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N 453 (902)
+..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.... ..++... . ..|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~-------~~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--E-------DGLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--C-------CCEEEccCCHHHCEEEEEEEec
Confidence 45577899999999999987 888999999987654322 1222221 1 1299999999999999999987
Q ss_pred C-CceeEEEEEEEeec
Q psy12803 454 E-VDIAKGSLILFESN 468 (902)
Q Consensus 454 ~-~G~~~~s~~L~V~~ 468 (902)
. .+....++.|.|.+
T Consensus 73 ~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 73 HGFKQTLATYSLNVLE 88 (89)
T ss_pred CccceeEeEEEEEEec
Confidence 5 45667888888864
No 145
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.80 E-value=9e-09 Score=89.03 Aligned_cols=61 Identities=30% Similarity=0.599 Sum_probs=50.7
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+++.|.|.+.|.|.|.+.|+++++.++... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 61 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASN 61 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEEC
Confidence 7899999999999999999998666654433 233445567999999999999999999999
No 146
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.78 E-value=1.3e-08 Score=93.23 Aligned_cols=67 Identities=28% Similarity=0.499 Sum_probs=50.1
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC---Cccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAVA---SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~---~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+..|++++|.|.+.|.|.|.++|++++..+.... ..+..... .+.|.|.+++.+|+|.|+|.|.|
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 84 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASN 84 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEec
Confidence 344568999999999999999999999765432211 11111111 24799999999999999999999
No 147
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.78 E-value=9.5e-09 Score=89.25 Aligned_cols=60 Identities=27% Similarity=0.552 Sum_probs=46.3
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCC-ccce-eccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGS-WKDS-AVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~-~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
++|.|.+.|.|.|.|+|+|++........ .+.. ...++.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 62 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT 62 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcC
Confidence 47999999999999999998764332222 1222 224568999999999999999999993
No 148
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.77 E-value=1.1e-08 Score=90.09 Aligned_cols=65 Identities=17% Similarity=0.336 Sum_probs=52.2
Q ss_pred CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+++.+.+|+++.|.|.+.+. .+.+.|+|++..+.... +. ...+.+|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~--~~-~~~~~~L~I~~~~~~DsG~Y~C~a~n 66 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENN--RT-RITGEEVQIKDAVPRDSGLYACVTSS 66 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCc--eE-EEeCCEEEECCCChhhCEEEEEEEeC
Confidence 45778999999999999996 56899999876653322 22 22356899999999999999999988
No 149
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.77 E-value=1.2e-08 Score=92.92 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=54.2
Q ss_pred CcEEEEcCCeEEEEEecCC-----CCCCceEEecCCCcccccC-CccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATG-----HPKPSIIWKTSENKPITLG-SWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G-----~P~p~v~W~k~~~~~~~~~-~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+..+.+|+.+.|.|.+.+ .|.+.|.|+|++..+.... ...+....++.|.|.+++.+|+|.|+|.+.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence 3467889999999999999 6899999999886532211 1122233467899999999999999999998
No 150
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.76 E-value=6e-09 Score=91.38 Aligned_cols=62 Identities=31% Similarity=0.503 Sum_probs=48.3
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceec-cCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV-ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+++.|.|.+.|.|.|.|+|++++..+........... ..+.|+|.+++.+|+|.|+|.|.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 63 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN 63 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEe
Confidence 78999999999999999999997765432222111111 235899999999999999999998
No 151
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.76 E-value=1e-08 Score=91.85 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=54.8
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.|.+.++.+|+++.|.|.+.+ +.++++|++++..+.... . .....++.|.|.+++.+|+|.|+|.|.+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~-~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES-A-KYLLYRDGLLIFNASEADAGRYQCLSVE 69 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC-c-eEEEECCcEEEeCCCHHHCEEEEEEEEe
Confidence 356688999999999999875 678999999876654332 2 2344567899999999999999999977
No 152
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.76 E-value=3.8e-08 Score=89.90 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=60.6
Q ss_pred CceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 376 NRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
+.++.+.+|+++.|+|.+.+.|.+.|.|++.+..++.. ...++....... ...+|.|.+++.+|+|.|+|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~----~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISISDVSLSDEGQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCC----CcEEEEECcCCcccCEEEEE
Confidence 45788999999999999999999999998654433221 122333221111 12469999999999999999
Q ss_pred EEEeCCceeEEEEEEEe
Q psy12803 450 ISKNEVDIAKGSLILFE 466 (902)
Q Consensus 450 ~A~N~~G~~~~s~~L~V 466 (902)
.+.+.. ....++.|.|
T Consensus 80 ~~~t~~-~~~~~~~l~v 95 (95)
T cd07701 80 SLFTMP-VKTSKAYLTV 95 (95)
T ss_pred EeEeec-CccEEEEEEC
Confidence 999853 3366666654
No 153
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.76 E-value=8.3e-09 Score=92.83 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=47.9
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceec----c---CCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAV----A---SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~---~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+.++|.|.+.|.|.+.++|+|++..+.... .+..+. . .++|.|.+++.+|+|.|+|.|.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N 68 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAIN 68 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEc
Confidence 7899999999999999999999775443322 222211 1 14799999999999999999999
No 154
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.76 E-value=3.8e-09 Score=89.96 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=44.6
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
++|.|.+.|.|.|.++|+|++..+.. ....+.|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-------~~~~~~L~i~~v~~~D~G~YtC~a~N~ 53 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISG-------KHSQHSLQIKDVTEASAGTYTLVLWNS 53 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcc-------cCCcCEEEECCCCHHHCEEEEEEEEEC
Confidence 57999999999999999998765421 123568999999999999999999994
No 155
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.76 E-value=6.9e-09 Score=89.30 Aligned_cols=57 Identities=25% Similarity=0.523 Sum_probs=46.9
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.|.|.|.+.|+|++..+... .......+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 57 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN--RTKKLNNNKTLQLDNVLESDDGEYVCTAEN 57 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC--ceeEEcCCCEEEEcccCHHhCEEEEEEEEc
Confidence 579999999999999999988765332 122334567999999999999999999999
No 156
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.75 E-value=8e-09 Score=89.98 Aligned_cols=58 Identities=28% Similarity=0.379 Sum_probs=45.0
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceecc--CC--cEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA--SS--TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~--~~--sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++|.|.+.|.|.|.|+|+|++..+... ..+..... .+ +|.|.+++.+|+|.|+|.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 62 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVN 62 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence 579999999999999999987654322 22222221 22 699999999999999999999
No 157
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.75 E-value=6.6e-09 Score=88.84 Aligned_cols=57 Identities=26% Similarity=0.506 Sum_probs=46.8
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|.|.|.+.|.|.|.++|+|++..+... .+.....++.|.|.+++.+|+|.|+|.|.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 57 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES--GKFHISPEGYLAIRDVGVADQGRYECVARN 57 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC--CCEEECCCCEEEECcCChhhCEEEEEEEEC
Confidence 579999999999999999977554322 233344567999999999999999999998
No 158
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.74 E-value=1e-08 Score=87.46 Aligned_cols=56 Identities=21% Similarity=0.590 Sum_probs=46.3
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+|.|.+.|.|.|.+.|+|++..+.. .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 56 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEILDDKSLKIRNVTAGDEGSYTCEAEN 56 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC---CcEEEeeCCEEEECcCChhHCEEEEEEEEc
Confidence 57999999999999999998665422 223334667899999999999999999999
No 159
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.74 E-value=1.3e-08 Score=91.92 Aligned_cols=62 Identities=26% Similarity=0.410 Sum_probs=45.5
Q ss_pred CCeEEEEEecCCCCCCceEEecCC----CcccccCCcc----------ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSE----NKPITLGSWK----------DSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~----~~~~~~~~~~----------~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.|.|.|.|+|+|++ ..+....... ........|.|.+|+.+|+|.|+|.|.|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 76 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN 76 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec
Confidence 689999999999999999999963 1111111100 0111234799999999999999999999
No 160
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.73 E-value=1.5e-08 Score=86.88 Aligned_cols=57 Identities=30% Similarity=0.582 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++|+|.|.+.|.|.|.|+|+|++..+... .........|.|.++ +|+|.|+|.|.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~---~~~~~~~~~L~i~~~--~d~G~Y~C~A~N 57 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE---DEMPVGRNVLELTNI--YESANYTCVAIS 57 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc---cceecCccEEEEecc--ccCeeEEEEEEe
Confidence 789999999999999999999987654221 122234457999987 489999999998
No 161
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.73 E-value=6.7e-09 Score=89.47 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=46.5
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.|.|.|.+.|+|++..+... .......++|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~~~~~~L~I~~v~~~D~G~YtC~a~N 56 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTKKSGHSLTIKDVTEEDAGNYTVVLTN 56 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---CEEEcCCCEEEECcCCHHHCEEEEEEEEc
Confidence 479999999999999999977654332 23344567899999999999999999998
No 162
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.73 E-value=2.8e-08 Score=90.41 Aligned_cols=69 Identities=28% Similarity=0.405 Sum_probs=59.0
Q ss_pred CCcEEEEcCCeEEEEEe-cCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCV-ATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMG-AYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~-a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N 367 (902)
.+.+.|.+|+.+.|.|. ..|.|.|.|.|++++...+. ...+.....++.|.|.+|+.+|+| .|.|.|.|
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEECCCceEEEEEEehhhCCCCeEEEEEc
Confidence 35688999999999997 68999999999987666554 345666667899999999999999 89999998
No 163
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.73 E-value=1.4e-08 Score=89.13 Aligned_cols=66 Identities=30% Similarity=0.574 Sum_probs=52.6
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.+..|+++.|.|.+.+.|.|.+.|+|++..+..... ........+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 69 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI-GESRKKKWTLSLKNLKPEDSGKYTCHVSN 69 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc-ceecCceEEEEEccCChhhCEEEEEEEEc
Confidence 4567899999999999999999999998776543221 11222345899999999999999999998
No 164
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.72 E-value=2.6e-08 Score=90.72 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=55.2
Q ss_pred CcEEEEcCCeEEEEEec-CCCCCCceEEecCCCccc-ccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPI-TLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~-~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+.+|+.+.|.|.. .+.|.+.+.|++++.... .....+.....++.|.|.+|+.+|+|+|+|.|+|
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence 44778999999999975 568999999999876532 2223334444579999999999999999999998
No 165
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.72 E-value=7.3e-08 Score=86.43 Aligned_cols=70 Identities=26% Similarity=0.452 Sum_probs=54.9
Q ss_pred cCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
.|.++.+.+|+++.|.|.+.+ |.+++.|++++..+... ..++.+.. +. |.|.+++.+|+|.|+|.|.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~-~~r~~~~~---~~------L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE-SAKYLLYR---DG------LLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC-CceEEEEC---Cc------EEEeCCCHHHCEEEEEEEEec
Confidence 356788999999999999865 67899999988776543 23444322 22 999999999999999999887
Q ss_pred C
Q psy12803 455 V 455 (902)
Q Consensus 455 ~ 455 (902)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 4
No 166
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.72 E-value=8.1e-09 Score=89.25 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=45.8
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.|.|.|++.|+|++..+.. ... .....+.+|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE-KCS-RYHVDGYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC-CCc-EEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence 47999999999999999998765433 212 2233456899999999999999999988
No 167
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.72 E-value=3.2e-08 Score=86.98 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=50.5
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCC-CceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPK-PSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~-p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.|+...+.+|++|+|.|.+.+.|. ..+.|+|++..+. ..+++|+|.++ .+|+|.|+|.|.|
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE---------TTTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee---------ccCCeEEEeec-ccCCEEeEEECCC
Confidence 345578999999999999999875 4699999875431 23568999999 9999999999988
No 168
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.70 E-value=7.4e-08 Score=86.31 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=59.4
Q ss_pred CceEEEEEEeeccCC--ceEEEEecCCeeeecCC-ceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEE
Q psy12803 384 GRTATLECEVEAFPL--SVRYWEFIDGTLIEHDG-VKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG 460 (902)
Q Consensus 384 G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~-~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~ 460 (902)
|+++.|.|.+.+.+. ..+.|.+.+..+..... ..... .........++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 788999999988664 47799877654321110 00000 01112345678999999999999999999999999999
Q ss_pred EEEEEeec
Q psy12803 461 SLILFESN 468 (902)
Q Consensus 461 s~~L~V~~ 468 (902)
+..|.|.+
T Consensus 79 ~t~~~V~~ 86 (86)
T cd05862 79 STIVIVHE 86 (86)
T ss_pred cEEEEEeC
Confidence 99988863
No 169
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.70 E-value=2.4e-08 Score=91.27 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=54.2
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC------ccceec----cCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS------WKDSAV----ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~------~~~~~~----~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..++++.+|++|.|.|.+.+.|.+.|.|+|.+..++.... .+.... .+.+|.|.+|+.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4568899999999999999999999999998765432111 111111 235899999999999999999865
No 170
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.68 E-value=4.2e-08 Score=88.60 Aligned_cols=72 Identities=22% Similarity=0.412 Sum_probs=52.8
Q ss_pred ecCCcEEEEc---CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeee-ecCceeEEeecCC
Q psy12803 296 FSSSPIVVRE---GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINR-INMGAYMCLADNV 368 (902)
Q Consensus 296 ~~~~~v~v~e---Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~-~DsG~YtC~A~N~ 368 (902)
..+.++.+.+ |+++.|.|.+.|+|.|.++|+|++..+..... ......++.|.|.++.. +|+|.|+|.|.|.
T Consensus 6 ~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 6 EQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD-SRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred eCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC-CCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 3444454433 46899999999999999999997765422222 23344567899998875 9999999999993
No 171
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.67 E-value=2.2e-08 Score=90.28 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=45.1
Q ss_pred CCeEEEEEecCCCCCCceEEecCC---Ccccc-cCCcccee----------ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSE---NKPIT-LGSWKDSA----------VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~---~~~~~-~~~~~~~~----------~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.|.|.|.|+|+|++ +..+. ........ ...++|+|.+|+.+|+|.|+|.|.|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 76 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGN 76 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEe
Confidence 789999999999999999999853 11111 11100000 0124799999999999999999999
No 172
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.67 E-value=2e-08 Score=88.25 Aligned_cols=59 Identities=27% Similarity=0.524 Sum_probs=46.2
Q ss_pred EEEEEecCCCCCCceEEecCCCccccc------CCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+|.|.+.|.|.|.++|+|++...... ...+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 65 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSN 65 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEe
Confidence 589999999999999999975432211 12233334568999999999999999999999
No 173
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.67 E-value=2.7e-08 Score=87.02 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=45.6
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeee----ecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINR----INMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~----~DsG~YtC~A~N 367 (902)
++|.|.+.|+|.|+|+|+|++..+......+... ..+++|.|.+++. +|+|.|+|.|.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN 64 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEc
Confidence 5799999999999999999876553322222222 3467999999864 799999999999
No 174
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.66 E-value=1.9e-08 Score=87.09 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=46.5
Q ss_pred eEEEEEecCCCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 308 NVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 308 ~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++.|.|.+.|.|.|.+.|+|++..+.......... .....|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 61 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEEC
Confidence 47899999999999999999876653322211111 1245899999999999999999999
No 175
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.66 E-value=2e-08 Score=89.42 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=46.8
Q ss_pred CeEEEEEecCCCCCC--ceEEecCCCcccccCC-c----cceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 307 DNVRLRCVATGHPKP--SIIWKTSENKPITLGS-W----KDSAVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 307 e~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~~-~----~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
++++|.|.+.+.|.| ++.|+|++..+..... . .......++|.|.+++.+|+|.|+|.|.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 69 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTV 69 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecC
Confidence 578999999999987 5689997765432221 1 112234678999999999999999999983
No 176
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.65 E-value=1.3e-08 Score=87.50 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=45.2
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.|.|.|.++|+|++..+... .....+..|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~----~~~~~~~~L~I~~v~~~D~G~YtC~a~N 55 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN----HTFKRGVHLTIYEVTEKDAGNYTVVLTN 55 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC----CEEccCCEEEECcCCHHHCEEEEEEEEE
Confidence 479999999999999999987665322 1223456899999999999999999998
No 177
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.64 E-value=3e-08 Score=88.63 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=46.1
Q ss_pred CeEEEEEecCCCCCC--ceEEecCCCcccccC-Cccc--e-e-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 307 DNVRLRCVATGHPKP--SIIWKTSENKPITLG-SWKD--S-A-VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 307 e~v~L~C~a~G~P~p--~v~W~k~~~~~~~~~-~~~~--~-~-~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++++|.|.+.|.|.| .++|+|++..+.... ..+. . . ...++|+|.+++.+|+|.|+|.|.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n 68 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQT 68 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEec
Confidence 578999999999987 589999776543221 1111 1 1 1346899999999999999999999
No 178
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.63 E-value=5.2e-08 Score=85.51 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=47.2
Q ss_pred CCeEEEEEecCCCCCCceEEecCCC--c-ccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSEN--K-PITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~--~-~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.|.|.|.|+|+|+.. . ...... ........++|+|.+++.+|+|.|+|.|.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 68 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARN 68 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEec
Confidence 7899999999999999999999732 1 111111 112233456899999999999999999999
No 179
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.63 E-value=4.2e-08 Score=85.93 Aligned_cols=59 Identities=27% Similarity=0.406 Sum_probs=44.9
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccce-eccCCcEEEEeeeee----cCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASSTLNFTRINRI----NMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-~~~~~sL~I~~Vt~~----DsG~YtC~A~N 367 (902)
+.|.|.+.|+|.|+|+|+|++..+......... ...+++|+|..+..+ |+|.|+|.|.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARN 64 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEc
Confidence 579999999999999999987665322222222 234678999888753 78999999999
No 180
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.62 E-value=5.8e-08 Score=86.43 Aligned_cols=68 Identities=19% Similarity=0.391 Sum_probs=54.7
Q ss_pred ecCCcEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 296 FSSSPIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 296 ~~~~~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
..+..+.+.+|++++|.|.+.+ .|.+.+.|++++..+.. .....++.|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----RAMDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----cccccCCEEEECCCCHHHCEEEEEEEecc
Confidence 3456678999999999999975 78899999998765311 12234578999999999999999999983
No 181
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.62 E-value=2.5e-08 Score=85.23 Aligned_cols=57 Identities=26% Similarity=0.481 Sum_probs=45.6
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++|.|.+.|.|.|.+.|+|++..+.. . ..........|.|.+++.+|+|.|+|.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 57 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA-D-RTKFENFNKTLKIDNVSEEDDGEYRCTASN 57 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC-C-ceeEecCCCEEEECCCCHHHCEEEEEEEEe
Confidence 57999999999999999998765432 1 112223456899999999999999999999
No 182
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.62 E-value=5.3e-08 Score=88.98 Aligned_cols=70 Identities=14% Similarity=0.324 Sum_probs=52.8
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc------CCcccee----ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSA----VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.++++.+|+++.|.|.+.+.|.+.|.|++.+..++.. ...+... ....+|+|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 45688999999999999999999999998744332211 1112221 1235899999999999999999976
No 183
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.62 E-value=4.1e-08 Score=87.64 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=47.3
Q ss_pred CeEEEEEecCC--CCCCceEEecCCCcccccC-Ccccee----ccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 307 DNVRLRCVATG--HPKPSIIWKTSENKPITLG-SWKDSA----VASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 307 e~v~L~C~a~G--~P~p~v~W~k~~~~~~~~~-~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
+++.|.|.+.+ .+.+.|.|+|++..+.... ..+... ..++.|+|.+++.+|+|+|+|.|+|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~ 69 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTS 69 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcc
Confidence 57899999987 5588899999876664222 222222 24568999999999999999999993
No 184
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.61 E-value=7.4e-08 Score=86.62 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=53.5
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+..... ..........|.|.+++.+|+|.|+|.|.+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEec
Confidence 34577899999999999988 8889999998766533221 112233345799999999999999999987
No 185
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.61 E-value=1.4e-07 Score=85.60 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=57.9
Q ss_pred eeeeecCceEEEEEEeec-----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803 378 RVGVPIGRTATLECEVEA-----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g-----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~ 452 (902)
.+.+.+|.++.|.|...+ +|.|.+.|++++..+.. ....+ . .. +.|.|.+|+.+|+|.|+|+|.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~-~~~~~--~--~~------~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG-DRKRF--V--KG------SKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC-CccEE--e--cC------CEEEEeeCChhhCEEEEEEEE
Confidence 456889999999997753 35789999998876643 22221 1 22 249999999999999999999
Q ss_pred eCCceeEEEEEEEe
Q psy12803 453 NEVDIAKGSLILFE 466 (902)
Q Consensus 453 N~~G~~~~s~~L~V 466 (902)
|..+.....+...+
T Consensus 73 n~~~~~~~~~t~t~ 86 (92)
T cd05757 73 FTHNGKQYNVTRTI 86 (92)
T ss_pred ecCCCEEEEEEEEE
Confidence 99887765555444
No 186
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.60 E-value=3.7e-07 Score=83.07 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=58.9
Q ss_pred ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
.++.+.+|++++|.|.+.+.+.+.+.|++.++.++.. ...++....... ....|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA----NELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC----CeeEEEEccCCcccCEEEEEE
Confidence 4577899999999999999899999998654433211 112333321111 134699999999999999999
Q ss_pred EEeCCceeEEEEEEEe
Q psy12803 451 SKNEVDIAKGSLILFE 466 (902)
Q Consensus 451 A~N~~G~~~~s~~L~V 466 (902)
+.+... .++++.|.|
T Consensus 81 ~~~~~~-~~~~~~~~v 95 (95)
T cd05717 81 LYTMPV-QTAKATVTV 95 (95)
T ss_pred EecCCC-ceEEEEEEC
Confidence 998753 355555554
No 187
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.60 E-value=5.4e-08 Score=85.26 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=44.1
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccce-eccCCcEEEEeeee----ecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASSTLNFTRINR----INMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~-~~~~~sL~I~~Vt~----~DsG~YtC~A~N 367 (902)
+.|.|.+.|+|.|.|+|+|++..+......+.. ...+++|.|..+.. +|+|.|+|.|.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARN 64 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence 479999999999999999987643222222222 23567999998742 479999999999
No 188
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.60 E-value=8.6e-08 Score=89.85 Aligned_cols=62 Identities=19% Similarity=0.375 Sum_probs=47.3
Q ss_pred cCCeEEEEEecCCCCCCceEEecCCCcccccCCccce--e-----ccCCcEEEEeee-eecCceeEEeecC
Q psy12803 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS--A-----VASSTLNFTRIN-RINMGAYMCLADN 367 (902)
Q Consensus 305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~-----~~~~sL~I~~Vt-~~DsG~YtC~A~N 367 (902)
.|.+++|.|.+.|.|.+.++|+|++..+..... +.. . ...++|+|.+++ .+|.|.|+|.|.|
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N 91 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHN 91 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEe
Confidence 468999999999999999999997755432221 111 1 113579999997 5999999999999
No 189
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.59 E-value=3e-08 Score=87.27 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=43.9
Q ss_pred EEEecCCCCCCceEEecCCCcccccCCccce--e----ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 311 LRCVATGHPKPSIIWKTSENKPITLGSWKDS--A----VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 311 L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~----~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|.|.+.|+|.|+|+|+|++..+......... . ...++|.|.+++.+|+|.|+|+|+|
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N 65 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKN 65 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEc
Confidence 7899999999999999987765433211111 1 1234799999999999999999999
No 190
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.59 E-value=3.2e-08 Score=87.66 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=44.6
Q ss_pred EEEEecCCCCCCceEEecCCCcccccCCcccee--------ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 310 RLRCVATGHPKPSIIWKTSENKPITLGSWKDSA--------VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 310 ~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~--------~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.|.|.+.|+|.|.|+|+|++..+.......... ...+.|+|.+++.+|+|.|+|.|.|
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N 67 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASN 67 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEe
Confidence 378999999999999999877665433211111 1234799999999999999999999
No 191
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.58 E-value=3.5e-07 Score=82.87 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=59.0
Q ss_pred eeeeecCceEEEEEEeeccCCceEEEEecCCeee--e--cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE-
Q psy12803 378 RVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLI--E--HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK- 452 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~--~--~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~- 452 (902)
.+.+.+|+++.|.|.. ..|.|.+.|++.+.... . ....++.. ....|.|.+++.+|+|.|+|.|.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEc
Confidence 3568899999999997 48999999998543211 0 01122221 11239999999999999999997
Q ss_pred eCCceeEEEEEEEeec
Q psy12803 453 NEVDIAKGSLILFESN 468 (902)
Q Consensus 453 N~~G~~~~s~~L~V~~ 468 (902)
|..+.....++|.|..
T Consensus 75 ~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 75 HSFSQTLAKYTLHVIE 90 (91)
T ss_pred cCCeEEEEEEEEEEec
Confidence 5778788888888864
No 192
>KOG3515|consensus
Probab=98.57 E-value=1.9e-07 Score=111.39 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=112.4
Q ss_pred EEEcCCeEEEEEecCCC-CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC-------------
Q psy12803 302 VVREGDNVRLRCVATGH-PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN------------- 367 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N------------- 367 (902)
.+.+|+.|.|.|.+.++ |.+.+.|++.+.... .+.....+.+|....+.++..+.|.|+|.|
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~ 93 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILD 93 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeec
Confidence 68899999999999984 567899999876654 344555677899999999999999999999
Q ss_pred --CCCEEEEcCceeeeecCceEEEEEEee--ccCCceEEEEecCCeeeecCCceEEEeecCCCc-eeeEeEEEEeccCCC
Q psy12803 368 --VPPQILIRNRRVGVPIGRTATLECEVE--AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGS-YQYIMQLNISNVNIS 442 (902)
Q Consensus 368 --~~P~i~~~p~~~~v~~G~~v~L~C~a~--g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s-~~~~stL~I~~V~~~ 442 (902)
++|.-...........+..+.+.|.+. +.|.+.+.|..+...................++ +...+.|.+...+.+
T Consensus 94 v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka 173 (741)
T KOG3515|consen 94 VDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKA 173 (741)
T ss_pred cccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEec
Confidence 333333333344566788999999664 557789999887665544332222211111111 122455899999999
Q ss_pred CCeEEEEEEEeC---CceeEEEEEEEeec
Q psy12803 443 DFDTYRCISKNE---VDIAKGSLILFESN 468 (902)
Q Consensus 443 DsG~YtC~A~N~---~G~~~~s~~L~V~~ 468 (902)
|.|+|+|.|.|. .+.......+.|..
T Consensus 174 ~~g~~tC~A~nr~s~~l~~~~~~~i~v~~ 202 (741)
T KOG3515|consen 174 DNGNYTCPANNRNSPGLSFAKQLTIIVEA 202 (741)
T ss_pred CCceeEcccccccCccccccceeEeeccc
Confidence 999999999995 33344444454443
No 193
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.57 E-value=1.3e-07 Score=86.16 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=55.7
Q ss_pred ceeeeecCceEEEEEEe-eccCCceEEEEecCCeeee-cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 377 RRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
..+.+.+|+.+.|.|.. .+.|.+.+.|++++..+.. .+.+++.. ..++. |.|.+|+.+|+|.|+|.|+|.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~--~~~G~------L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS--QTNGN------LYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe--CCCCc------EEEeecCHhhCceeEEEEEec
Confidence 34678999999999965 7889999999998765422 22333322 22333 999999999999999999998
Q ss_pred Ccee
Q psy12803 455 VDIA 458 (902)
Q Consensus 455 ~G~~ 458 (902)
+...
T Consensus 83 ~~~~ 86 (96)
T cd05727 83 SSTK 86 (96)
T ss_pred ccCC
Confidence 7544
No 194
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.57 E-value=4.8e-07 Score=78.48 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=58.9
Q ss_pred CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
|.+...+ ..+.+|++++|.|.+.+.|.+.+.|++++..+..... .|.|.+++.+|+|.|+|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~y~C 62 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN-----------------GLFIPNVSPEDSGNYTC 62 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS-----------------EEEESSEEGGGTEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee-----------------eeeeeeeccccCEEEEE
Confidence 5555544 5689999999999999999999999987655432111 16678899999999999
Q ss_pred EEEeCCc-eeEEEEEEEe
Q psy12803 450 ISKNEVD-IAKGSLILFE 466 (902)
Q Consensus 450 ~A~N~~G-~~~~s~~L~V 466 (902)
.|.|..+ ..+.++.|.|
T Consensus 63 ~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 63 RASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCCeEeeeEEeeC
Confidence 9999664 4567777765
No 195
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.57 E-value=5.3e-08 Score=84.70 Aligned_cols=59 Identities=31% Similarity=0.518 Sum_probs=46.6
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccCCccceeccC-CcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVAS-STLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.|.|.|.+.|+|++..+......+.....+ ..|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N 60 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKN 60 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEc
Confidence 4799999999999999999877654333223333333 4799999999999999999998
No 196
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.55 E-value=1.5e-07 Score=76.96 Aligned_cols=60 Identities=32% Similarity=0.595 Sum_probs=49.0
Q ss_pred cCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 305 eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+|++++|.|.+.+.|.+.+.|++++..+. ...........|.|.+++.+|+|.|+|.+.|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence 58999999999989999999999765543 2223334566899999999999999999976
No 197
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.55 E-value=6.9e-08 Score=83.41 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=45.5
Q ss_pred EEEEEecCC-CCCCceEEecCCCcccccCCccce-e---ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDS-A---VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~-~---~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++|.|.+.| .|.|.+.|+|++..+......... . ...++|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 64 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEE
Confidence 479999999 999999999987665433221110 1 1245899999999999999999998
No 198
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.53 E-value=1.9e-07 Score=84.96 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=57.4
Q ss_pred CceeeeecCceEEEEEE-eeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-EEEEEEEe
Q psy12803 376 NRRVGVPIGRTATLECE-VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-TYRCISKN 453 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~-a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~YtC~A~N 453 (902)
...+.+.+|+.+.|.|. ..|+|.|.|.|++++...+. .+.++.+. .++. |.|.+|+.+|+| .|.|.|+|
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~--~~Gn------L~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMG--QNGN------LYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEEC--CCce------EEEEEEehhhCCCCeEEEEEc
Confidence 46688999999999997 69999999999976655443 34444443 2233 999999999999 89999999
Q ss_pred CCce
Q psy12803 454 EVDI 457 (902)
Q Consensus 454 ~~G~ 457 (902)
....
T Consensus 81 ~~~~ 84 (95)
T cd05845 81 PGLR 84 (95)
T ss_pred cccc
Confidence 8643
No 199
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.52 E-value=2.8e-07 Score=82.00 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=54.4
Q ss_pred eeeeecCceEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 378 RVGVPIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
...+.+|++++|.|.+.. .+.+.+.|++++..+... .. .+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~------~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HS------NSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CC------CceEEECccCHHHCEEEEEEEEeCCc
Confidence 446899999999999854 567789999987544210 01 12499999999999999999999987
Q ss_pred ee-EEEEEEE
Q psy12803 457 IA-KGSLILF 465 (902)
Q Consensus 457 ~~-~~s~~L~ 465 (902)
.. +..+.|.
T Consensus 73 ~~~s~~~~i~ 82 (83)
T cd05753 73 DYSSEPVSIT 82 (83)
T ss_pred eecCCCEEEE
Confidence 54 3444443
No 200
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.51 E-value=3.1e-07 Score=74.96 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=48.7
Q ss_pred cCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
+|+++.|.|.+.+.|.+.+.|++++..+. .... .. .. ...|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~--~~-~~------~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNR--LS-AS------GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCE--Ee-cC------CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999999999999999998776553 1111 11 11 23499999999999999999999765
No 201
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.49 E-value=4.4e-07 Score=82.65 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=54.6
Q ss_pred eeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEe----------ecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 379 VGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSIS----------DVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~----------~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
+.+.+|++|+|.|.+.+.+.+.+.|++++.........++.+. ...+....-...|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 4578999999999999999999999876644321111111100 000000011346999999999999999
Q ss_pred EEEEeCCceeE
Q psy12803 449 CISKNEVDIAK 459 (902)
Q Consensus 449 C~A~N~~G~~~ 459 (902)
|.|.|..++.+
T Consensus 82 C~v~~~~~~~~ 92 (94)
T cd07690 82 CEVEDKKEEVE 92 (94)
T ss_pred EEECCccceEE
Confidence 99999877653
No 202
>smart00409 IG Immunoglobulin.
Probab=98.48 E-value=1.6e-06 Score=74.89 Aligned_cols=83 Identities=30% Similarity=0.377 Sum_probs=62.6
Q ss_pred ceeeeecCceEEEEEEeeccCCceEEEEec-CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFI-DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+. ...++....... ..+|.|.++..+|+|.|+|.+.|..
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCC
Confidence 345678999999999999988899999987 43332 122222222211 3469999999999999999999998
Q ss_pred ceeEEEEEEEe
Q psy12803 456 DIAKGSLILFE 466 (902)
Q Consensus 456 G~~~~s~~L~V 466 (902)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00409 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 88877777766
No 203
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.48 E-value=1.6e-06 Score=74.89 Aligned_cols=83 Identities=30% Similarity=0.377 Sum_probs=62.6
Q ss_pred ceeeeecCceEEEEEEeeccCCceEEEEec-CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFI-DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+. ...++....... ..+|.|.++..+|+|.|+|.+.|..
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCC
Confidence 345678999999999999988899999987 43332 122222222211 3469999999999999999999998
Q ss_pred ceeEEEEEEEe
Q psy12803 456 DIAKGSLILFE 466 (902)
Q Consensus 456 G~~~~s~~L~V 466 (902)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00410 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 88877777766
No 204
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.48 E-value=1e-07 Score=84.67 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=46.6
Q ss_pred CCeEEEEEecCCC--CCCceEEecCCCcccccCCc--cce----eccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGH--PKPSIIWKTSENKPITLGSW--KDS----AVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~--P~p~v~W~k~~~~~~~~~~~--~~~----~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.+. |.+.|+|++.+......... ... ....++|+|.+++.+|+|.|+|.|.|
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n 70 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASS 70 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEcc
Confidence 7899999999998 88999999876543211110 011 11235899999999999999999998
No 205
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.44 E-value=1.8e-07 Score=78.22 Aligned_cols=60 Identities=22% Similarity=0.485 Sum_probs=45.3
Q ss_pred CCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCC---cEEEEeeeeecCceeEEee
Q psy12803 306 GDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASS---TLNFTRINRINMGAYMCLA 365 (902)
Q Consensus 306 Ge~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~---sL~I~~Vt~~DsG~YtC~A 365 (902)
|++|+|.|.+ .+.+...+.|+|++................. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7788899999998876544322111111111 2999999999999999986
No 206
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.43 E-value=4.1e-07 Score=80.92 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=49.4
Q ss_pred cEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 300 PIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
...|.+|++|+|.|.+.. .+.+.+.|+|++..+.. ......|.|.+++.+|+|.|+|.|.+
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEe
Confidence 346899999999999864 56778999998754321 12356899999999999999999998
No 207
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.42 E-value=2.6e-07 Score=80.44 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=43.7
Q ss_pred EEEEEecCC-CCCCceEEecCCCcccccCC--cccee---ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATG-HPKPSIIWKTSENKPITLGS--WKDSA---VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~--~~~~~---~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.+ .|.+.++|+|++..+..... .+... ...++|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N 65 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSS 65 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEe
Confidence 479999875 78899999998766543221 11111 1235799999999999999999998
No 208
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.41 E-value=5e-07 Score=79.61 Aligned_cols=67 Identities=27% Similarity=0.483 Sum_probs=51.1
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccce--eccCCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS--AVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~--~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.+.+|+++.|.|.+.+.|.+.+.|+|++..+......... ......|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 72 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEE
Confidence 56788999999999999999999999987654322111111 11224799999999999999999987
No 209
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.40 E-value=1.3e-06 Score=92.53 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=62.4
Q ss_pred ceeeeecCceEEEEEEeeccCC-----------ceEEEEecCCeeeec-CCce--EE-EeecCCCceeeEeEEEEeccCC
Q psy12803 377 RRVGVPIGRTATLECEVEAFPL-----------SVRYWEFIDGTLIEH-DGVK--YS-ISDVDKGSYQYIMQLNISNVNI 441 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~-----------P~v~W~k~~~~l~~~-~~~~--~~-~~~~~~~s~~~~stL~I~~V~~ 441 (902)
..+.+.+|++|.|.|.+.++|. +.|.|++.+...... .+.+ .. +...... ....+|.|.+++.
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~--~r~~~L~I~~v~~ 107 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG--DRSENLWIGNVIN 107 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee--cCCCeEEECCCCh
Confidence 4567899999999999987653 489999986542211 1111 00 0000000 0123599999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803 442 SDFDTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 442 ~DsG~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
+|+|.|+|.|+|..+..+.++.|.|..
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEec
Confidence 999999999999999989999998854
No 210
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.40 E-value=2.2e-07 Score=82.85 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCc--cce---eccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSW--KDS---AVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~--~~~---~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++++|.|.+.+.|.+.+.|++.+......... ... .....+|+|.+++.+|+|.|+|.|.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n 67 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHE 67 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEE
Confidence 789999999999999999999865432111000 011 11235899999999999999999987
No 211
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.38 E-value=6.4e-07 Score=81.53 Aligned_cols=71 Identities=14% Similarity=0.375 Sum_probs=52.1
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCccccc------CCcccee----ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITL------GSWKDSA----VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~------~~~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++++.+.+|++++|.|.+.+.+.+.+.|++.+..++.. ...+... ....+|+|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 45688999999999999998888999998744432211 1112111 1234799999999999999999876
Q ss_pred C
Q psy12803 368 V 368 (902)
Q Consensus 368 ~ 368 (902)
.
T Consensus 84 ~ 84 (95)
T cd05717 84 M 84 (95)
T ss_pred C
Confidence 3
No 212
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.38 E-value=4.5e-07 Score=82.61 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=49.1
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccC------------Cccce------eccCCcEEEEeeeeecCceeE
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG------------SWKDS------AVASSTLNFTRINRINMGAYM 362 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~------------~~~~~------~~~~~sL~I~~Vt~~DsG~Yt 362 (902)
+.+.+|++|+|.|.+++.+.+.+.|++++....... ..+.. ...+.+|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 568899999999999999999999997653321100 00000 111236999999999999999
Q ss_pred EeecC
Q psy12803 363 CLADN 367 (902)
Q Consensus 363 C~A~N 367 (902)
|.+.|
T Consensus 82 C~v~~ 86 (94)
T cd07690 82 CEVED 86 (94)
T ss_pred EEECC
Confidence 99987
No 213
>PHA03376 BARF1; Provisional
Probab=98.38 E-value=2.8e-06 Score=84.64 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=71.7
Q ss_pred cEEEEcCCeEEEEEecC---CCCCCceEEecCC----CcccccC-----------Ccccee---ccCCcEEEEeeeeecC
Q psy12803 300 PIVVREGDNVRLRCVAT---GHPKPSIIWKTSE----NKPITLG-----------SWKDSA---VASSTLNFTRINRINM 358 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~---G~P~p~v~W~k~~----~~~~~~~-----------~~~~~~---~~~~sL~I~~Vt~~Ds 358 (902)
.+.+..||.+.|+|... ..+...|+|+|.+ ...+... +.+... ..+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 46788999999999866 2356789999942 2221111 111111 1234899999999999
Q ss_pred ceeEEeecC-------------CC-CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCe
Q psy12803 359 GAYMCLADN-------------VP-PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT 409 (902)
Q Consensus 359 G~YtC~A~N-------------~~-P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~ 409 (902)
|+|+|..+. +. ..+.+.........-+..++.|.+-|+|.|.++|.-+.+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 999999976 11 1122222111122256688999999999999999766553
No 214
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.37 E-value=1.1e-06 Score=74.87 Aligned_cols=74 Identities=34% Similarity=0.418 Sum_probs=50.5
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
+|.+...+.......+. ++|.|.+.+.| .+.+.|+ ....... ..........++|.|.++..+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~---------~~~~~~~~~~~~L~i~~v~~~~~g~y 69 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN---------SNSRGSSSSNSTLTISNVTRSDNGTY 69 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE---------EEEEEEEEEEEEEEESSCCGGGTEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee---------eeeeeccceeeEEEEccCCHHhCcEE
Confidence 36677766655444444 99999999988 8899997 1111000 01111123456799999999999999
Q ss_pred EEEEEe
Q psy12803 448 RCISKN 453 (902)
Q Consensus 448 tC~A~N 453 (902)
+|+|+|
T Consensus 70 ~C~a~N 75 (75)
T PF13927_consen 70 TCIASN 75 (75)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999988
No 215
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.37 E-value=8.9e-07 Score=81.23 Aligned_cols=76 Identities=25% Similarity=0.299 Sum_probs=54.4
Q ss_pred CceeecCCcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceec-------cCCcEEEEeeeeec-CceeE
Q psy12803 292 SEHIFSSSPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAV-------ASSTLNFTRINRIN-MGAYM 362 (902)
Q Consensus 292 ~~~i~~~~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~-------~~~sL~I~~Vt~~D-sG~Yt 362 (902)
+|.|.......+.+|++++|.|.+.+.|.|. |.|...+..+......+..+. ..++|+|.++..+| .|.|.
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~ 81 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN 81 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence 3445555668899999999999998888774 678776554333222233222 23489999998877 79999
Q ss_pred EeecC
Q psy12803 363 CLADN 367 (902)
Q Consensus 363 C~A~N 367 (902)
|.|.|
T Consensus 82 C~a~N 86 (98)
T cd05898 82 CTAWN 86 (98)
T ss_pred EEEEe
Confidence 99998
No 216
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.37 E-value=3e-07 Score=83.50 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=50.9
Q ss_pred EEEEcCCeEEEEEecCC-----CCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATG-----HPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G-----~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+|+++.|.|.+.+ +|.|.+.|+|++..+.. .. . ....++.|.|.+|+.+|+|.|+|.|.|
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~-~~-~-~~~~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG-DR-K-RFVKGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC-Cc-c-EEecCCEEEEeeCChhhCEEEEEEEEe
Confidence 56889999999998754 36789999998765432 22 1 222677999999999999999999987
No 217
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.35 E-value=8.2e-07 Score=80.47 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=49.2
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCc--ccc-cCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PIT-LGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~~-~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.+.+|+++.|.|... .|.+.+.|+|.+.. ... ..........+++|.|.+++.+|+|.|+|.|.+
T Consensus 5 ~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 5 VVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEEecCCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEc
Confidence 36789999999999974 78999999984321 111 011122233456799999999999999999975
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.29 E-value=1.8e-06 Score=78.73 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=56.2
Q ss_pred eeeeecCceEEEEEEe-ec----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE
Q psy12803 378 RVGVPIGRTATLECEV-EA----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK 452 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a-~g----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~ 452 (902)
.+.+.+|.+..|.|.- ++ .+.++++|+|++..+.. ...++.... .. +.|.|.+|..+|+|.|+|+|.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~-~~------~~L~I~~v~~~D~G~YtC~~~ 75 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLK-GS------TYLHIIDVSLNDSGYYTCKLQ 75 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecC-CC------CEEEEEEcChhhCEEEEEEEE
Confidence 3567789999999962 33 36779999998866543 333332211 11 139999999999999999999
Q ss_pred eCCcee----EEEEEEEe
Q psy12803 453 NEVDIA----KGSLILFE 466 (902)
Q Consensus 453 N~~G~~----~~s~~L~V 466 (902)
|..+.. .+++.|.|
T Consensus 76 ~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 76 FTHEGKKYNITRIIKLRI 93 (95)
T ss_pred EeeCCEEEEEEEEEEEEE
Confidence 987654 34555544
No 219
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.26 E-value=1.3e-06 Score=72.89 Aligned_cols=63 Identities=30% Similarity=0.414 Sum_probs=45.0
Q ss_pred CceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 384 GRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 384 G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
|++++|.|.+ ...+...+.|++++..+...... ....... .....|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT--NRSTNSV---SSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE--EEEETTT---EEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee--Eeecccc---eeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 77788899999988765432211 1111111 11225999999999999999987
No 220
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.25 E-value=6e-06 Score=72.93 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=52.6
Q ss_pred eEEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEEE
Q psy12803 386 TATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGSL 462 (902)
Q Consensus 386 ~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s~ 462 (902)
.+.|.|.+.+ .|.+.|+|++++..+.. .............+...+.|.|.....+|.|.|+|.|.|..... +.++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDG--ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccC--ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 3689999987 58889999997765532 21111111122234556789999888889999999999986443 4555
Q ss_pred EEE
Q psy12803 463 ILF 465 (902)
Q Consensus 463 ~L~ 465 (902)
+|.
T Consensus 79 ~l~ 81 (82)
T cd05759 79 TLD 81 (82)
T ss_pred EEc
Confidence 553
No 221
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.22 E-value=5.2e-06 Score=73.13 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=54.7
Q ss_pred eEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee---EEE
Q psy12803 386 TATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA---KGS 461 (902)
Q Consensus 386 ~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~---~~s 461 (902)
.++|+|.+. +.|+++|.|++++..+..... .......+..+++|.|.....+|.+.|+|.|.|..+.. +.+
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~ 75 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQ 75 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc-----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEE
Confidence 378999885 779999999999887743211 11223344567789999999999999999999997653 444
Q ss_pred EEEE
Q psy12803 462 LILF 465 (902)
Q Consensus 462 ~~L~ 465 (902)
..|.
T Consensus 76 ~~l~ 79 (80)
T cd05885 76 YSLD 79 (80)
T ss_pred EEEe
Confidence 4443
No 222
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.18 E-value=1.3e-05 Score=74.36 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=57.4
Q ss_pred cCceEEEEEEeeccC------CceEEEEecC-----Ce-eeecCCceEEEeecCC------CceeeEeEEEEeccCCCCC
Q psy12803 383 IGRTATLECEVEAFP------LSVRYWEFID-----GT-LIEHDGVKYSISDVDK------GSYQYIMQLNISNVNISDF 444 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P------~P~v~W~k~~-----~~-l~~~~~~~~~~~~~~~------~s~~~~stL~I~~V~~~Ds 444 (902)
.|++|+|.|.....+ ...|.|++.. .. +............... ......++|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987654 4689999872 11 1111111111100000 0011246799999999999
Q ss_pred eEEEEEEEeCCceeEEEEEEEeec
Q psy12803 445 DTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 445 G~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
|.|.|.+.+..+.....++|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988889999998874
No 223
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.17 E-value=6.5e-06 Score=71.10 Aligned_cols=68 Identities=29% Similarity=0.606 Sum_probs=51.0
Q ss_pred CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+.+|+++.|.|.+.+.+.+.+.|++++...+.... +..... ..+|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCC-cEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 346788999999999999988899999997233222111 111222 25899999999999999999986
No 224
>smart00409 IG Immunoglobulin.
Probab=98.17 E-value=6.5e-06 Score=71.10 Aligned_cols=68 Identities=29% Similarity=0.606 Sum_probs=51.0
Q ss_pred CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceecc---CCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVA---SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+.+|+++.|.|.+.+.+.+.+.|++++...+.... +..... ..+|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCC-cEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 346788999999999999988899999997233222111 111222 25899999999999999999986
No 225
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.17 E-value=7.5e-06 Score=75.28 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=57.1
Q ss_pred eeeeecCceEEEEEEee-----------ccCCceEEEEecCCeeeecCC-----ceEEEeecCCCceeeEeEEEEeccCC
Q psy12803 378 RVGVPIGRTATLECEVE-----------AFPLSVRYWEFIDGTLIEHDG-----VKYSISDVDKGSYQYIMQLNISNVNI 441 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~-----------g~P~P~v~W~k~~~~l~~~~~-----~~~~~~~~~~~s~~~~stL~I~~V~~ 441 (902)
...+.+|+.|.|.|..- ......+.|+|++..+..... .+++.. ...|.|..+..
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~---------~~~Lwf~Pa~~ 79 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE---------EDSIWFRPAEL 79 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe---------CCEEEEEeCCh
Confidence 35688999999999861 112347999998644433221 122211 12399999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEe
Q psy12803 442 SDFDTYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 442 ~DsG~YtC~A~N~~G~~~~s~~L~V 466 (902)
+|+|.|+|+++|.-...+.++.|.|
T Consensus 80 eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 80 QDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred hhCeEEEEEECCCCcceEEEEEEEC
Confidence 9999999999999888888887765
No 226
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.14 E-value=2.3e-06 Score=74.11 Aligned_cols=58 Identities=29% Similarity=0.589 Sum_probs=47.6
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+|++++|.|.+.++|.+.+.|++++..+.. ....|.|.+++.+|+|.|+|.|.+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~---------~~~~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS---------SQNGLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE---------ESSEEEESSEEGGGTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee---------eeeeeeeeeeccccCEEEEEEEEe
Confidence 5689999999999999999999999996544321 112288889999999999999977
No 227
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.14 E-value=2.4e-05 Score=71.35 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=54.4
Q ss_pred ceeeeecCceEEEEEEeeccCCceEEEEecCCeeee------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIE------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
.++.+.+|+++.|+|.+.......+.|++.+..++. ....++....... ...+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~----~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSS----NELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCC----CEEEEEECcCCcccCEEEEEE
Confidence 467899999999999999988778899877755431 1334444432121 134699999999999999999
Q ss_pred EEe
Q psy12803 451 SKN 453 (902)
Q Consensus 451 A~N 453 (902)
+..
T Consensus 81 v~t 83 (95)
T cd05881 81 LYT 83 (95)
T ss_pred EEc
Confidence 975
No 228
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.13 E-value=2.7e-06 Score=77.58 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=49.0
Q ss_pred EEEEcCCeEEEEEec-C----CCCCCceEEecCCCcccccCCcccee-ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 301 IVVREGDNVRLRCVA-T----GHPKPSIIWKTSENKPITLGSWKDSA-VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a-~----G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+|.+..|.|.- . .++.++++|+|++..+.. ...+... .....|.|.+|+.+|+|.|+|+|.+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEE
Confidence 457789999999972 2 346789999998765432 2222222 2346899999999999999999987
No 229
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.13 E-value=6.3e-06 Score=75.20 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=53.2
Q ss_pred CCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccc------cCCccceecc----CCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPIT------LGSWKDSAVA----SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~------~~~~~~~~~~----~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+++++.+|++|+|+|.+.+.....+.|++.+..++. ....++.... ..+|+|.+++.+|+|.|.|.+..
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 3568899999999999999977777889877655431 1112222111 22699999999999999999876
Q ss_pred CCC
Q psy12803 368 VPP 370 (902)
Q Consensus 368 ~~P 370 (902)
.++
T Consensus 84 ~p~ 86 (95)
T cd05881 84 DPP 86 (95)
T ss_pred ccC
Confidence 444
No 230
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.11 E-value=6.2e-06 Score=75.81 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=50.9
Q ss_pred cEEEEcCCeEEEEEecC-----------CCCCCceEEecCCCcccccCC----ccceeccCCcEEEEeeeeecCceeEEe
Q psy12803 300 PIVVREGDNVRLRCVAT-----------GHPKPSIIWKTSENKPITLGS----WKDSAVASSTLNFTRINRINMGAYMCL 364 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~-----------G~P~p~v~W~k~~~~~~~~~~----~~~~~~~~~sL~I~~Vt~~DsG~YtC~ 364 (902)
.+.+.+||.|.|.|... ......+.|+|++........ ..+....+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 36789999999999971 112347999998644333221 124556678999999999999999999
Q ss_pred ecC
Q psy12803 365 ADN 367 (902)
Q Consensus 365 A~N 367 (902)
+.|
T Consensus 89 ~rN 91 (104)
T cd05896 89 LRN 91 (104)
T ss_pred ECC
Confidence 998
No 231
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.07 E-value=3.8e-05 Score=71.26 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=56.6
Q ss_pred cCceEEEEEEeeccC------CceEEEEecCCe-----e-eecCC----------ceEEEeecCCCceeeEeEEEEeccC
Q psy12803 383 IGRTATLECEVEAFP------LSVRYWEFIDGT-----L-IEHDG----------VKYSISDVDKGSYQYIMQLNISNVN 440 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P------~P~v~W~k~~~~-----l-~~~~~----------~~~~~~~~~~~s~~~~stL~I~~V~ 440 (902)
.|++|+|.|.....| ...|.|++.... . ..... .++...... ....+|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAH----DLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCC----CCcEEEEEccCC
Confidence 488999999987663 357999986421 1 11110 111111000 113569999999
Q ss_pred CCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803 441 ISDFDTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 441 ~~DsG~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
.+|+|.|.|.+.+..+..+..+.|.|..
T Consensus 77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 77 LEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred hHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999999999999999998864
No 232
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.07 E-value=1.8e-05 Score=70.64 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=57.0
Q ss_pred ceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEE-eCC
Q psy12803 377 RRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISK-NEV 455 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~-N~~ 455 (902)
.++.+.+|+++.|.|...+. .+.+.|++++..+.. +.++.....+ |.|.+++.+|+|.|.|.+. |.+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~--~~r~~~~~~G---------LlI~~~~~~dsG~Y~C~s~E~gf 71 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA--QFSYRVGTDG---------LLILVTSPEHSGTYRCYSEEEGF 71 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCC--CcceEEeCCC---------CEEEECCHhhCEEEEEEEecCCC
Confidence 45778999999999999876 569999999887643 2333332222 8899999999999999985 333
Q ss_pred ceeEEEEEEEee
Q psy12803 456 DIAKGSLILFES 467 (902)
Q Consensus 456 G~~~~s~~L~V~ 467 (902)
-..-..+.|.|.
T Consensus 72 ~~~~~~y~l~v~ 83 (85)
T cd05872 72 QQLVASYSLNVV 83 (85)
T ss_pred eEEEEEEEEEEe
Confidence 344455555543
No 233
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.06 E-value=1.8e-06 Score=73.61 Aligned_cols=63 Identities=37% Similarity=0.676 Sum_probs=44.3
Q ss_pred EEcCCeEEEEEecCCCC-CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 303 VREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 303 v~eGe~v~L~C~a~G~P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+..+..++|.|.+.+.+ .+.++|+. . ...............++|.|.+++.+|.|.|+|.|.|
T Consensus 12 ~~~~~~~~l~C~~~~~~~~~~~~W~~-~-~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 12 VTSGGSVTLTCSAEGGPPPPSISWYD-S-NPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EETTEEEEEEEEESSEESSEEEEEET-E-EEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EeeceeEEEEEEEccccCCeEEEEEe-c-CCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 34444499999999977 88999991 1 1111111122333456899999999999999999986
No 234
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.01 E-value=6.5e-06 Score=73.71 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=44.5
Q ss_pred CCeEEEEEecCCCC--CCceEEecCCCcccccC--Cc-cce----eccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHP--KPSIIWKTSENKPITLG--SW-KDS----AVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P--~p~v~W~k~~~~~~~~~--~~-~~~----~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|+++.|.|.+.+.+ ...+.|.+.+....... .. +.. ....+.|.|.+++.+|+|.|+|.|.|
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n 71 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASS 71 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEee
Confidence 78999999998754 55789988765432111 10 111 11245899999999999999999998
No 235
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.01 E-value=9.6e-06 Score=71.47 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=45.2
Q ss_pred eEEEEEecCC-CCCCceEEecCCCcccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 308 NVRLRCVATG-HPKPSIIWKTSENKPITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 308 ~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.|+|.+.+ +|.++|+|||++..+..... ........++|.|.....+|.+.|+|+|.|
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n 64 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASH 64 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEC
Confidence 3789999875 99999999998877643211 111112335799999999999999999999
No 236
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.00 E-value=7.4e-06 Score=74.11 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=49.2
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecCC
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADNV 368 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N~ 368 (902)
...|.+|++|+|.|... .+...+.|+|++...... . .........|.|.+|+.+|+|.|+|.+.+.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 45688999999999886 467789999987643211 1 111223457999999999999999999873
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.00 E-value=3.2e-05 Score=71.97 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=54.8
Q ss_pred EcCceeeeecCceEEEEEEeeccCCceEEEEecCCe--e---ee-------cCCceEEEeecCCCceeeEeEEEEeccCC
Q psy12803 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT--L---IE-------HDGVKYSISDVDKGSYQYIMQLNISNVNI 441 (902)
Q Consensus 374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~--l---~~-------~~~~~~~~~~~~~~s~~~~stL~I~~V~~ 441 (902)
..+..+.+.+|++|+|.|.+.+.+...+.|++.... . .. ....++.+..... .....|.|.+++.
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~~~~ 79 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS---RKSSSLHISAAQL 79 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc---CCEEEEEECCCCH
Confidence 345677899999999999999878889999975421 0 10 0112232222111 1245699999999
Q ss_pred CCCeEEEEEEEeCC
Q psy12803 442 SDFDTYRCISKNEV 455 (902)
Q Consensus 442 ~DsG~YtC~A~N~~ 455 (902)
+|+|.|.|.+.+..
T Consensus 80 ~DsG~Y~C~~~~~~ 93 (109)
T cd04983 80 SDSAVYFCALSESG 93 (109)
T ss_pred HHCEEEEEEEecCC
Confidence 99999999998764
No 238
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.00 E-value=3.6e-05 Score=70.61 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=52.4
Q ss_pred CceEEEEEEeeccC---CceEEEEecCCeee--e-cCC------------ceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803 384 GRTATLECEVEAFP---LSVRYWEFIDGTLI--E-HDG------------VKYSISDVDKGSYQYIMQLNISNVNISDFD 445 (902)
Q Consensus 384 G~~v~L~C~a~g~P---~P~v~W~k~~~~l~--~-~~~------------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG 445 (902)
|++|+|.|...... ...|.|++...... . ... .++.... ........+|.|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLK--DAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeec--ccccCCcEEEEEEcCChhhCE
Confidence 68899999986332 23688987653211 0 000 1111110 000112356999999999999
Q ss_pred EEEEEEEeCCceeEEEEEEEe
Q psy12803 446 TYRCISKNEVDIAKGSLILFE 466 (902)
Q Consensus 446 ~YtC~A~N~~G~~~~s~~L~V 466 (902)
.|+|.+.|..+..+..+.|.|
T Consensus 79 ~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEecCCcEEEEEEEEEE
Confidence 999999998888888888876
No 239
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.96 E-value=7e-05 Score=70.56 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=56.2
Q ss_pred cCceEEEEEEeeccC------------CceEEEEecCC----eeeecCCc----------eEEEeecCCCceeeEeEEEE
Q psy12803 383 IGRTATLECEVEAFP------------LSVRYWEFIDG----TLIEHDGV----------KYSISDVDKGSYQYIMQLNI 436 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P------------~P~v~W~k~~~----~l~~~~~~----------~~~~~~~~~~s~~~~stL~I 436 (902)
.|++|+|.|...... .+.|.|++... .+...... ++.+.... ......+|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~--~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP--AIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC--CCCCCcEEEE
Confidence 489999999887442 46899997532 11111111 22221100 0112356999
Q ss_pred eccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803 437 SNVNISDFDTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 437 ~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
.+++.+|+|.|.|.+.+.+......+.|.|..
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999999999888888888888864
No 240
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.95 E-value=1.4e-05 Score=71.41 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred CcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.++++.+|+++.|.|...++ .+.+.|++++..+... . ........|.|.+++.+|+|.|.|.+.-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~--~-r~~~~~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ--F-SYRVGTDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC--c-ceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence 35789999999999999985 6699999988765332 2 2333445588999999999999999854
No 241
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.92 E-value=1.6e-05 Score=74.01 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=51.4
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCc--cc---c-------cCCccceec-----cCCcEEEEeeeeecCc
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENK--PI---T-------LGSWKDSAV-----ASSTLNFTRINRINMG 359 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~--~~---~-------~~~~~~~~~-----~~~sL~I~~Vt~~DsG 359 (902)
.+..+.+.+|++|+|.|.+.+.+...+.|+|.... .. . ....+.... ...+|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34568899999999999999878889999985421 10 0 011122121 2348999999999999
Q ss_pred eeEEeecC
Q psy12803 360 AYMCLADN 367 (902)
Q Consensus 360 ~YtC~A~N 367 (902)
.|.|.+.+
T Consensus 84 ~Y~C~~~~ 91 (109)
T cd04983 84 VYFCALSE 91 (109)
T ss_pred EEEEEEec
Confidence 99999876
No 242
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.92 E-value=5.5e-05 Score=70.41 Aligned_cols=85 Identities=15% Similarity=0.013 Sum_probs=55.5
Q ss_pred EcCceeeeecCceEEEEEEeeccCCceEEEEecCCe-----eeec-C-----------CceEEEeecCCCceeeEeEEEE
Q psy12803 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGT-----LIEH-D-----------GVKYSISDVDKGSYQYIMQLNI 436 (902)
Q Consensus 374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~-----l~~~-~-----------~~~~~~~~~~~~s~~~~stL~I 436 (902)
+.+.+..+.+|++|.|.|.....+...+.|+|.... +... . +.+.. ...+ .+|.|
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~--~~~n------gSL~I 74 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET--IYPN------GSLLI 74 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE--EeCC------CcEEE
Confidence 344556688999999999654334448999985321 1110 0 01111 1112 24999
Q ss_pred eccCCCCCeEEEEEEEeCC-ceeEEEEEEEe
Q psy12803 437 SNVNISDFDTYRCISKNEV-DIAKGSLILFE 466 (902)
Q Consensus 437 ~~V~~~DsG~YtC~A~N~~-G~~~~s~~L~V 466 (902)
.+++.+|+|.|+|.+.|.. ...+..+.|.|
T Consensus 75 ~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 75 QNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred ecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 9999999999999999987 45567666654
No 243
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.91 E-value=4e-05 Score=69.30 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
+|.+...+.. .|.+|++|+|.|... .+...+.|++++....... .. .......|.|.+|+.+|+|.|+
T Consensus 2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~-----~~~~~~~f~i~~v~~~~~G~Y~ 69 (91)
T cd05751 2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----PP-----EPQNKAKFFIPSMKREHAGRYR 69 (91)
T ss_pred CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----cC-----CCceeEEEEccCCChhHCEEEE
Confidence 4667776653 588999999999885 6677889988776432110 00 0122456999999999999999
Q ss_pred EEEEeC
Q psy12803 449 CISKNE 454 (902)
Q Consensus 449 C~A~N~ 454 (902)
|.+.|.
T Consensus 70 C~~~~~ 75 (91)
T cd05751 70 CYYRSG 75 (91)
T ss_pred EEEECC
Confidence 999986
No 244
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.91 E-value=9.1e-05 Score=69.57 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=55.8
Q ss_pred cCceEEEEEEeeccC----------CceEEEEecCC--e--eeecCCc----------eEEEeecCCCceeeEeEEEEec
Q psy12803 383 IGRTATLECEVEAFP----------LSVRYWEFIDG--T--LIEHDGV----------KYSISDVDKGSYQYIMQLNISN 438 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P----------~P~v~W~k~~~--~--l~~~~~~----------~~~~~~~~~~s~~~~stL~I~~ 438 (902)
.|++|+|.|.....+ ...|.|++... . +...... ++.+.... .......|+|.+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~--~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP--ENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC--CCCCcEEEEECC
Confidence 488999999987654 25799998631 1 1111111 11111000 011235699999
Q ss_pred cCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803 439 VNISDFDTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
++.+|+|.|.|.+.......+..+.|.|..
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999999877888888888864
No 245
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.90 E-value=2.4e-05 Score=71.74 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=53.7
Q ss_pred CcEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCCccceecc------CCcEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGSWKDSAVA------SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~------~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.|.+|+++.|.|.+.+.|.|+ +.|.+++..+............ .+.|.|..+..+|+|.|+|.|.|
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N 86 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEEC
Confidence 347899999999999999999998 9999987654333221111111 14799999999999999999999
No 246
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.90 E-value=5.5e-05 Score=70.75 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=53.5
Q ss_pred EcCceeeeecCceEEEEEEeeccCCceEEEEecCC--ee---eec-----------CCceEEEeecCCCceeeEeEEEEe
Q psy12803 374 IRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDG--TL---IEH-----------DGVKYSISDVDKGSYQYIMQLNIS 437 (902)
Q Consensus 374 ~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~--~l---~~~-----------~~~~~~~~~~~~~s~~~~stL~I~ 437 (902)
..+..+.+.+|++|+|.|.+.+ +.+.+.|++... .+ ... ...++....... ...+|.|.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~ 77 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL----TRSSLTIK 77 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC----CccEEEEC
Confidence 4566788999999999999988 778899998653 11 100 012222221111 23569999
Q ss_pred ccCCCCCeEEEEEEEeCC
Q psy12803 438 NVNISDFDTYRCISKNEV 455 (902)
Q Consensus 438 ~V~~~DsG~YtC~A~N~~ 455 (902)
+++.+|+|.|.|.+.+..
T Consensus 78 ~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 78 SAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CCChhhCEEEEEEeeCCC
Confidence 999999999999998753
No 247
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.88 E-value=0.0001 Score=69.79 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=53.8
Q ss_pred CceeeeecCceEEEEEEeeccC----CceEEEEecC---Ce---eeec-CC------ceE--EEeecCCCceeeEeEEEE
Q psy12803 376 NRRVGVPIGRTATLECEVEAFP----LSVRYWEFID---GT---LIEH-DG------VKY--SISDVDKGSYQYIMQLNI 436 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~---~~---l~~~-~~------~~~--~~~~~~~~s~~~~stL~I 436 (902)
+..+.+.+|++++|.|.....+ ...|.|++.. .. +... .. .++ +..... ......++|.|
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~I 83 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASILI 83 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEEE
Confidence 5567899999999999986543 2469997531 11 1110 00 011 000000 00112456999
Q ss_pred eccCCCCCeEEEEEEEeCCcee--EEEEEEE
Q psy12803 437 SNVNISDFDTYRCISKNEVDIA--KGSLILF 465 (902)
Q Consensus 437 ~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~ 465 (902)
.+++.+|+|.|+|.+.|..+.. ...+.|.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999999976642 3455554
No 248
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.86 E-value=7e-05 Score=67.28 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=51.1
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeec-------CCce-------EEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEH-------DGVK-------YSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~-------~~~~-------~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
|++|+|.|.........|.|++........ .... -+.....+ ..|.|.+++.+|+|.|+|
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~------~sL~I~~l~~~DsG~Y~c 74 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN------GSLLIQNLTKEDSGTYTL 74 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC------ceEEEccCCchhcEEEEE
Confidence 789999999887667799999876432110 0000 01111111 349999999999999999
Q ss_pred EEEeCCce-eEEEEEEEe
Q psy12803 450 ISKNEVDI-AKGSLILFE 466 (902)
Q Consensus 450 ~A~N~~G~-~~~s~~L~V 466 (902)
.+....+. ....+.|.|
T Consensus 75 ~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 75 QIISTNGVTENAKFFLRV 92 (92)
T ss_pred EEEcCCCcEEEEEEEEEC
Confidence 99887643 356665543
No 249
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.86 E-value=2.2e-05 Score=73.45 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=50.2
Q ss_pred cCCcEEEEcCCeEEEEEecCCCCCCceEEecCCC--ccc--c------------cCCcccee--c--cCCcEEEEeeeee
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSEN--KPI--T------------LGSWKDSA--V--ASSTLNFTRINRI 356 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~--~~~--~------------~~~~~~~~--~--~~~sL~I~~Vt~~ 356 (902)
.+..+.+.+|++|+|.|.+.+ +...+.|+|... .+. . ....+... . ...+|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 455688999999999999988 778899999643 111 0 00111111 1 2347999999999
Q ss_pred cCceeEEeecC
Q psy12803 357 NMGAYMCLADN 367 (902)
Q Consensus 357 DsG~YtC~A~N 367 (902)
|+|.|.|.+.+
T Consensus 83 Dsg~Y~Ca~~~ 93 (110)
T cd05899 83 DSAVYLCASSL 93 (110)
T ss_pred hCEEEEEEeeC
Confidence 99999999865
No 250
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.84 E-value=4e-05 Score=69.31 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=57.4
Q ss_pred ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
..|+.++|.|.+.++ |. ..|+|++++..+.... .........++.+...+.|.|......|.+.|+|+|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~-~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGV-TTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCce-eccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999998 63 6899998876663322 113344566677888889999888888999999999997654
No 251
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.84 E-value=3.2e-05 Score=71.97 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=49.4
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCcc----c----c---------cCCccceeccCCcEEEEeeeeecCceeE
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKP----I----T---------LGSWKDSAVASSTLNFTRINRINMGAYM 362 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~----~----~---------~~~~~~~~~~~~sL~I~~Vt~~DsG~Yt 362 (902)
+..+.+|++|.|.|.........++|+|..... + . ..+.+.....+++|.|.+++.+|+|.|+
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence 345789999999997654445589999953211 0 0 1123444566789999999999999999
Q ss_pred EeecC
Q psy12803 363 CLADN 367 (902)
Q Consensus 363 C~A~N 367 (902)
|.+.+
T Consensus 87 ~~v~~ 91 (105)
T cd05774 87 LQTIT 91 (105)
T ss_pred EEEEe
Confidence 99876
No 252
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.83 E-value=0.00019 Score=68.01 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=55.0
Q ss_pred CceeeeecCceEEEEEEeecc----CCceEEEEecCCe------eeec-CCc-----------eEEEeecCCCceeeEeE
Q psy12803 376 NRRVGVPIGRTATLECEVEAF----PLSVRYWEFIDGT------LIEH-DGV-----------KYSISDVDKGSYQYIMQ 433 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g~----P~P~v~W~k~~~~------l~~~-~~~-----------~~~~~~~~~~s~~~~st 433 (902)
+..+.+..|++++|.|..... +...|.|.+.... +... .+. +....... .....+
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~---~~~daS 81 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP---SRKDGS 81 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC---CcCeeE
Confidence 455778999999999998764 3458999543210 1111 111 11111111 123457
Q ss_pred EEEeccCCCCCeEEEEEEEeCCcee--EEEEEEEe
Q psy12803 434 LNISNVNISDFDTYRCISKNEVDIA--KGSLILFE 466 (902)
Q Consensus 434 L~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V 466 (902)
|.|.+++.+|.|.|+|.+.|.-+.. ...+.|.|
T Consensus 82 I~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 82 IVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred EEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 9999999999999999999986543 35555543
No 253
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.83 E-value=0.00013 Score=66.32 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=51.8
Q ss_pred ceEEEEEEeeccC---CceEEEEecCCe---e---eecC-C------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 385 RTATLECEVEAFP---LSVRYWEFIDGT---L---IEHD-G------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 385 ~~v~L~C~a~g~P---~P~v~W~k~~~~---l---~~~~-~------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
++|+|.|.....+ ...|.|++.... . .... . .+.++....... ...+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL--EDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC--CceEEEEccCCcccCEEEE
Confidence 4799999987654 447999987642 1 0000 0 001111011000 2357999999999999999
Q ss_pred EEEEe-CCceeEEEEEEEe
Q psy12803 449 CISKN-EVDIAKGSLILFE 466 (902)
Q Consensus 449 C~A~N-~~G~~~~s~~L~V 466 (902)
|.+.+ ..|..+..+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99876 6788888888876
No 254
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.79 E-value=0.00015 Score=68.12 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=55.5
Q ss_pred cCceEEEEEEeeccC-------CceEEEEecC-----Cee--ee-cCC---------ceEEEeecCCCceeeEeEEEEec
Q psy12803 383 IGRTATLECEVEAFP-------LSVRYWEFID-----GTL--IE-HDG---------VKYSISDVDKGSYQYIMQLNISN 438 (902)
Q Consensus 383 ~G~~v~L~C~a~g~P-------~P~v~W~k~~-----~~l--~~-~~~---------~~~~~~~~~~~s~~~~stL~I~~ 438 (902)
.|++|+|.|...-.| .+.|.|.+.. ... .. ... .+..+.. .......++|.|.+
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~--~~~~~~~asL~i~n 78 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPG--YPKNRYNASLVLSR 78 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeec--CCCCCceEEEEECC
Confidence 378899999976433 3689998752 111 11 111 1111211 11112356799999
Q ss_pred cCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803 439 VNISDFDTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 439 V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
++.+|+|.|.|.+.......+..+.|.|..
T Consensus 79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999999887788888888864
No 255
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.77 E-value=2.8e-05 Score=71.61 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=48.7
Q ss_pred EEEcCCeEEEEEecCCC-CCCceEEecCCCc--c--cc-----------cCCccceec-----cCCcEEEEeeeeecCce
Q psy12803 302 VVREGDNVRLRCVATGH-PKPSIIWKTSENK--P--IT-----------LGSWKDSAV-----ASSTLNFTRINRINMGA 360 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~--~--~~-----------~~~~~~~~~-----~~~sL~I~~Vt~~DsG~ 360 (902)
++.+|++|+|.|.+... +...+.|+|.... . +. ....+.... ...+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999886 6778999986431 1 00 001111111 22389999999999999
Q ss_pred eEEeecCCCC
Q psy12803 361 YMCLADNVPP 370 (902)
Q Consensus 361 YtC~A~N~~P 370 (902)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987443
No 256
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.76 E-value=0.00028 Score=65.27 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=58.5
Q ss_pred EEcCceeeeecCceEEEEEEee-ccCCceEEEEecCC-----eee-ecCC-----------ceEEEeecCCCceeeEeEE
Q psy12803 373 LIRNRRVGVPIGRTATLECEVE-AFPLSVRYWEFIDG-----TLI-EHDG-----------VKYSISDVDKGSYQYIMQL 434 (902)
Q Consensus 373 ~~~p~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~-----~l~-~~~~-----------~~~~~~~~~~~s~~~~stL 434 (902)
...+..+.+.+|++|.|.|... ......+.|++... .+. .... .++....... ....+|
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL 81 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS---QNNFSL 81 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT---TTEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc---CCeEEE
Confidence 3446678899999999999998 44566899998544 111 0011 0111111111 123569
Q ss_pred EEeccCCCCCeEEEEEEEeC-CceeEEEEEEEe
Q psy12803 435 NISNVNISDFDTYRCISKNE-VDIAKGSLILFE 466 (902)
Q Consensus 435 ~I~~V~~~DsG~YtC~A~N~-~G~~~~s~~L~V 466 (902)
.|.+++.+|+|.|.|.+... .........|.|
T Consensus 82 ~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 82 TIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred EECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999999887 333355555554
No 257
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.75 E-value=6e-05 Score=71.48 Aligned_cols=73 Identities=16% Similarity=0.371 Sum_probs=49.2
Q ss_pred cCCcEEEEcCCeEEEEEecCCC----CCCceEEecC-C-------------Ccccc--cC--Cccce-----eccCCcEE
Q psy12803 297 SSSPIVVREGDNVRLRCVATGH----PKPSIIWKTS-E-------------NKPIT--LG--SWKDS-----AVASSTLN 349 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~----P~p~v~W~k~-~-------------~~~~~--~~--~~~~~-----~~~~~sL~ 349 (902)
.+..+.+..|++++|.|..+.. +...|+|.+. . +.... .. ..+.. ...+.+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4556889999999999998653 3568999331 1 11111 00 01111 12456899
Q ss_pred EEeeeeecCceeEEeecCCC
Q psy12803 350 FTRINRINMGAYMCLADNVP 369 (902)
Q Consensus 350 I~~Vt~~DsG~YtC~A~N~~ 369 (902)
|.+++.+|+|.|+|.+.|.+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred EccCCcccCEEEEEEEEcCC
Confidence 99999999999999998843
No 258
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.75 E-value=0.00016 Score=64.03 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=49.4
Q ss_pred EEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 387 ATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 387 v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
+.|.|.+.+. |.+.|.|++++..+.... ........+.+...+.|.+.....+|...|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK---LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce---eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999765 889999999887664221 2222233456777888888776667777999999998654
No 259
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.74 E-value=4.5e-05 Score=68.55 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCccccc----------------CCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITL----------------GSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~----------------~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
|++|+|.|.........|.|+|........ -..+.....+++|.|.+++.+|+|.|+|.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEc
Confidence 789999999887677789999976442110 01223334567999999999999999998865
No 260
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.74 E-value=0.00011 Score=67.37 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=53.4
Q ss_pred ecCceEEEEEEeec-cCCceEEEEecCCeeeecCC----ce-------E--EEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 382 PIGRTATLECEVEA-FPLSVRYWEFIDGTLIEHDG----VK-------Y--SISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 382 ~~G~~v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~----~~-------~--~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
.+|++|+|.|.... .....+.|++....+..... .. + +..... -...|.|.+++.+|+|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~-----~~~sL~I~~~~~~DsG~Y 76 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQ-----NDYSLQISNLKMEDAGSY 76 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecC-----CceeEEECCCchHHCEEE
Confidence 47999999998765 44568999987443332211 00 0 111111 124599999999999999
Q ss_pred EEEEEeCCcee-EEEEEEEe
Q psy12803 448 RCISKNEVDIA-KGSLILFE 466 (902)
Q Consensus 448 tC~A~N~~G~~-~~s~~L~V 466 (902)
.|.+.+..|.. ...+.|.|
T Consensus 77 ~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 77 RAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEEEcCCCCeEEEEEEEEe
Confidence 99999887665 67777665
No 261
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.71 E-value=6.8e-05 Score=71.01 Aligned_cols=71 Identities=18% Similarity=0.384 Sum_probs=47.5
Q ss_pred cCCcEEEEcCCeEEEEEecCCCC----CCceEEecC---CCc--cc-c---------cCC--ccce-----eccCCcEEE
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHP----KPSIIWKTS---ENK--PI-T---------LGS--WKDS-----AVASSTLNF 350 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~---~~~--~~-~---------~~~--~~~~-----~~~~~sL~I 350 (902)
.+..+.+.+|++++|.|.....+ ...|.|++. +.. .+ . ... .+.. ...+.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45678899999999999976432 346999752 111 11 0 000 0111 112457999
Q ss_pred EeeeeecCceeEEeecC
Q psy12803 351 TRINRINMGAYMCLADN 367 (902)
Q Consensus 351 ~~Vt~~DsG~YtC~A~N 367 (902)
.+++.+|+|.|.|.+.|
T Consensus 84 ~~v~~~D~G~Y~C~v~~ 100 (115)
T cd05880 84 WQLQPTDNGTYTCQVKN 100 (115)
T ss_pred eeCChhhCEEEEEEEEe
Confidence 99999999999999987
No 262
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.71 E-value=5.7e-05 Score=66.65 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=41.5
Q ss_pred eEEEEEecCC-CCCCceEEecCCCcccccCCccceecc-------CCcEEEEeeeeecCceeEEeecC
Q psy12803 308 NVRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVA-------SSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 308 ~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~-------~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.|.|.+.| .|.+.|+|+|++..+.. ......... .+.|.|.....+|.|.|+|.|.|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n 67 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDG-ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARN 67 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccC-ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcC
Confidence 3689999987 79899999997654422 211111111 13577877778889999999998
No 263
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.70 E-value=0.00034 Score=66.20 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=54.4
Q ss_pred cCceeeeecCceEEEEEEeeccC----CceEEEEecCC------eeeec-CC-------ceEE--EeecCCCceeeEeEE
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFP----LSVRYWEFIDG------TLIEH-DG-------VKYS--ISDVDKGSYQYIMQL 434 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P----~P~v~W~k~~~------~l~~~-~~-------~~~~--~~~~~~~s~~~~stL 434 (902)
.|..+.+.+|++|+|.|...... ...|.|++... .+... .. .++. .....+ .....++|
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL 82 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGN-PSRKDASI 82 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecC-CcCCeeEE
Confidence 35567889999999999886442 24699986432 11110 00 0110 000000 01123569
Q ss_pred EEeccCCCCCeEEEEEEEeCCcee--EEEEEEEe
Q psy12803 435 NISNVNISDFDTYRCISKNEVDIA--KGSLILFE 466 (902)
Q Consensus 435 ~I~~V~~~DsG~YtC~A~N~~G~~--~~s~~L~V 466 (902)
+|.+++.+|+|.|.|.+.|.-... ...+.|.|
T Consensus 83 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 83 VIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred EEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 999999999999999999875532 34455543
No 264
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.69 E-value=0.00013 Score=67.86 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=52.8
Q ss_pred EEEcCceeeeecCceEEEEEEeeccC-CceEEEEecCC----eeee-cC-------CceEEEeecCCCceeeEeEEEEec
Q psy12803 372 ILIRNRRVGVPIGRTATLECEVEAFP-LSVRYWEFIDG----TLIE-HD-------GVKYSISDVDKGSYQYIMQLNISN 438 (902)
Q Consensus 372 i~~~p~~~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~----~l~~-~~-------~~~~~~~~~~~~s~~~~stL~I~~ 438 (902)
+...+..+.+.+|++|+|.|.+.+.. ...+.|++... ..+. .. ..++.... . .....|.|.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~---~~~~~L~I~~ 77 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--S---GTDFTLTISR 77 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--c---CCEEEEEECC
Confidence 34556778899999999999997765 56899987642 1111 00 11222211 1 1234699999
Q ss_pred cCCCCCeEEEEEEEeC
Q psy12803 439 VNISDFDTYRCISKNE 454 (902)
Q Consensus 439 V~~~DsG~YtC~A~N~ 454 (902)
++.+|+|.|.|.+.+.
T Consensus 78 ~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 78 VEPEDAAVYYCQQYGT 93 (106)
T ss_pred CChHHCEEEEEEEeCC
Confidence 9999999999998764
No 265
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.67 E-value=8.8e-05 Score=68.91 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=48.7
Q ss_pred cCCcEEEEcCCeEEEEEecCCCC-CCceEEecCCC--cc--cc-cC-------Cccceec---cCCcEEEEeeeeecCce
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSEN--KP--IT-LG-------SWKDSAV---ASSTLNFTRINRINMGA 360 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P-~p~v~W~k~~~--~~--~~-~~-------~~~~~~~---~~~sL~I~~Vt~~DsG~ 360 (902)
.+..+.+.+|++|+|.|.+.+.. ...+.|+|... .+ +. .. ..+.... ....|.|.+++.+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 45567899999999999998755 57799998542 11 10 00 0111111 12369999999999999
Q ss_pred eEEeecC
Q psy12803 361 YMCLADN 367 (902)
Q Consensus 361 YtC~A~N 367 (902)
|.|.+.+
T Consensus 86 Y~Ca~~~ 92 (106)
T cd04980 86 YYCQQYG 92 (106)
T ss_pred EEEEEeC
Confidence 9999865
No 266
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.67 E-value=0.00014 Score=66.82 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=50.6
Q ss_pred eeecCceEEEEEEeecc-CCceEEEEecCCe-----eee----------cCCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803 380 GVPIGRTATLECEVEAF-PLSVRYWEFIDGT-----LIE----------HDGVKYSISDVDKGSYQYIMQLNISNVNISD 443 (902)
Q Consensus 380 ~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~~-----l~~----------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D 443 (902)
.+.+|++|+|.|.+... +...+.|++.... +.. ....++.+..... ....+|.|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS---KSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc---CCEEEEEECCCCHHH
Confidence 57899999999999876 6778999986431 110 0112222222111 123469999999999
Q ss_pred CeEEEEEEEeCCc
Q psy12803 444 FDTYRCISKNEVD 456 (902)
Q Consensus 444 sG~YtC~A~N~~G 456 (902)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999988765
No 267
>KOG3515|consensus
Probab=97.67 E-value=0.00015 Score=87.19 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=128.1
Q ss_pred CCCccccccccccCCCCCCCCcccccCCcccCCceeecCCcEEEEcCCeEEEEEecC--CCCCCceEEecCCCcccccCC
Q psy12803 260 GTPAICAYKRESCSLLPNSETSQLLIPPTIVGSEHIFSSSPIVVREGDNVRLRCVAT--GHPKPSIIWKTSENKPITLGS 337 (902)
Q Consensus 260 G~pg~c~~kN~scs~~s~~~~~~v~vpP~i~~~~~i~~~~~v~v~eGe~v~L~C~a~--G~P~p~v~W~k~~~~~~~~~~ 337 (902)
..+=.|.+.|...........+.+..+|.-. ..........+..+.+.|.+. +.|.+.+.|..+.........
T Consensus 71 ~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~-----~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~ 145 (741)
T KOG3515|consen 71 VAELNCRAFNSVGMPSRCPMILDVDYPPACL-----PELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVN 145 (741)
T ss_pred hhhhhhhhcccccCceecceeeccccCcccc-----ccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccC
Confidence 3344555544433322223333444444321 222334567889999999654 578899999987654333221
Q ss_pred ---------ccceeccCCcEEEEeeeeecCceeEEeecC-------C------------CCEEEEcCc-eeeeecCceEE
Q psy12803 338 ---------WKDSAVASSTLNFTRINRINMGAYMCLADN-------V------------PPQILIRNR-RVGVPIGRTAT 388 (902)
Q Consensus 338 ---------~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------~------------~P~i~~~p~-~~~v~~G~~v~ 388 (902)
........+.|.+.....+|.|+|+|.|.| . ......... .+...+|+.+.
T Consensus 146 ~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~in 225 (741)
T KOG3515|consen 146 QRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTIN 225 (741)
T ss_pred CcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEE
Confidence 001113345789999999999999999988 1 111111111 25677899999
Q ss_pred EEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEee
Q psy12803 389 LECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFES 467 (902)
Q Consensus 389 L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~ 467 (902)
|.|.+. +.|.+.++|+++.......+. ...........++|.+..-...+.-...|.+.| .. .++..+.+.
T Consensus 226 lvc~~~gg~P~~~~~w~~~s~~~~~~sl-----~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~--~~~~~tav~ 297 (741)
T KOG3515|consen 226 LVCNAQGGNPSQQQTWYKDSRPQSESSL-----LSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL--AASQITAVQ 297 (741)
T ss_pred EEehhhcCCcchhhhhccccccchhhhc-----ccCCCCCCcccccccccccccchhhhhhccccC-cc--ccceeeecc
Confidence 999775 669999999988766543210 111112223344465555555555677899999 22 223333333
Q ss_pred cCCCCCCCCCCcceEEEEeCCCCCCccc-cCCCCcccCCCC
Q psy12803 468 NAKTPVPTEKEQEEVTVYNRAPKPEGQD-DLCPPQVLCPPC 507 (902)
Q Consensus 468 ~~p~~~~~~~~~~~v~~~~~~~~~~~~~-~~C~~~~v~~~c 507 (902)
.++...+....... ...++...+.|.. ..-++..++|..
T Consensus 298 ~~~~~~~Ist~~~~-ls~g~s~r~~c~~sss~p~~~i~w~~ 337 (741)
T KOG3515|consen 298 VKPTAVPISTSDSG-LSSGRSARSSCVSSSSKPPAHIAWYK 337 (741)
T ss_pred cccccccccCcccc-cccccccccceeccCCCCccceeeec
Confidence 33332222221111 3344445555544 233344566665
No 268
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.61 E-value=0.00012 Score=69.22 Aligned_cols=72 Identities=17% Similarity=0.353 Sum_probs=47.8
Q ss_pred ecCCcEEEEcCCeEEEEEecCCCC----CCceEEecCCCc------ccc----------cCC--cccee-----ccCCcE
Q psy12803 296 FSSSPIVVREGDNVRLRCVATGHP----KPSIIWKTSENK------PIT----------LGS--WKDSA-----VASSTL 348 (902)
Q Consensus 296 ~~~~~v~v~eGe~v~L~C~a~G~P----~p~v~W~k~~~~------~~~----------~~~--~~~~~-----~~~~sL 348 (902)
..+..+.+.+|++|+|.|...... ...|.|++.... ++. ... .+... ..+.+|
T Consensus 3 ~~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 82 (116)
T cd05715 3 YTPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASI 82 (116)
T ss_pred ecCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEE
Confidence 345668899999999999886532 256999864320 110 000 00111 123579
Q ss_pred EEEeeeeecCceeEEeecC
Q psy12803 349 NFTRINRINMGAYMCLADN 367 (902)
Q Consensus 349 ~I~~Vt~~DsG~YtC~A~N 367 (902)
+|.+++.+|+|.|.|.+.|
T Consensus 83 ~I~~v~~~D~G~Y~C~v~~ 101 (116)
T cd05715 83 VIHNLQFTDNGTYTCDVKN 101 (116)
T ss_pred EEeeCCcccCEEEEEEEEe
Confidence 9999999999999999987
No 269
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.58 E-value=0.00016 Score=65.94 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=48.9
Q ss_pred eecCCcEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC-ccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-WKDSAVASSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 295 i~~~~~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
+......+|.+|++|+|.|.... ....+.|+|++........ ..........|.|..++.+|+|.|.|...
T Consensus 4 l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 4 LSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 33444566889999999998766 5567999998765321110 00001123378999999999999999975
No 270
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.57 E-value=0.00093 Score=63.24 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=34.6
Q ss_pred EeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeec
Q psy12803 431 IMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 431 ~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~ 468 (902)
.++|.|.+++.+|+|.|.|.+.+.....+..+.|.|..
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 46799999999999999999999999899999998864
No 271
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.57 E-value=0.00045 Score=61.22 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=52.0
Q ss_pred EEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce-eEEEEEE
Q psy12803 387 ATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI-AKGSLIL 464 (902)
Q Consensus 387 v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~-~~~s~~L 464 (902)
+.|.|.+.+. |.+.|.|++++..+..... ........+...++|.|..-...|...|+|.|.|..-. .+.+..|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~----~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKST----VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCccc----ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 6899999755 8889999998877743211 11122233557888999766666666999999997532 3555555
Q ss_pred Eee
Q psy12803 465 FES 467 (902)
Q Consensus 465 ~V~ 467 (902)
.|.
T Consensus 78 ~V~ 80 (82)
T cd05883 78 EVQ 80 (82)
T ss_pred EEE
Confidence 554
No 272
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.57 E-value=0.00035 Score=63.80 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=48.9
Q ss_pred eeeecCceEEEEEEeec-cCCceEEEEecCCe----eee-------cCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803 379 VGVPIGRTATLECEVEA-FPLSVRYWEFIDGT----LIE-------HDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g-~P~P~v~W~k~~~~----l~~-------~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~ 446 (902)
+.+.+|++|+|.|.... .....+.|++.... ++. ....++.+..... ....+|+|.+++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPD---NGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCC---CCEEEEEEcCCCHHHCEE
Confidence 45789999999998865 35667899976521 110 1112222221111 124569999999999999
Q ss_pred EEEEEEeCC
Q psy12803 447 YRCISKNEV 455 (902)
Q Consensus 447 YtC~A~N~~ 455 (902)
|.|.+.+..
T Consensus 79 Y~C~~~~~~ 87 (98)
T cd05716 79 YWCGVGDDG 87 (98)
T ss_pred EEEEcccCC
Confidence 999987754
No 273
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.57 E-value=0.00025 Score=66.94 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=51.3
Q ss_pred cCceeeeecCceEEEEEEeec--cCCceEEEEecCC--ee---ee--c----------CCceEEEeecCCCceeeEeEEE
Q psy12803 375 RNRRVGVPIGRTATLECEVEA--FPLSVRYWEFIDG--TL---IE--H----------DGVKYSISDVDKGSYQYIMQLN 435 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g--~P~P~v~W~k~~~--~l---~~--~----------~~~~~~~~~~~~~s~~~~stL~ 435 (902)
.+..+.+.+|++|+|.|.+.+ .+.+.+.|++... .+ .. . ...++.+..... .....|+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~ 80 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG---KSTSTLT 80 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC---CCEEEEE
Confidence 355677889999999999987 6778999998631 11 10 0 012222221111 0245699
Q ss_pred EeccCCCCCeEEEEEEEe
Q psy12803 436 ISNVNISDFDTYRCISKN 453 (902)
Q Consensus 436 I~~V~~~DsG~YtC~A~N 453 (902)
|.+++.+|+|.|.|.+..
T Consensus 81 I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 81 IQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEECCHHHCEEEEEEEec
Confidence 999999999999999864
No 274
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.55 E-value=0.00012 Score=69.13 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=49.0
Q ss_pred CCcEEEEcCCeEEEEEecCC--CCCCceEEecCCC--cc---cc--c----------CCccceec-----cCCcEEEEee
Q psy12803 298 SSPIVVREGDNVRLRCVATG--HPKPSIIWKTSEN--KP---IT--L----------GSWKDSAV-----ASSTLNFTRI 353 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G--~P~p~v~W~k~~~--~~---~~--~----------~~~~~~~~-----~~~sL~I~~V 353 (902)
+..+.+.+|++|+|.|.+.+ .+.+.+.|+|... .+ +. . ...+.... ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44578899999999999877 6778899999532 11 00 0 01112211 1237999999
Q ss_pred eeecCceeEEeecC
Q psy12803 354 NRINMGAYMCLADN 367 (902)
Q Consensus 354 t~~DsG~YtC~A~N 367 (902)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999998754
No 275
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.55 E-value=0.00055 Score=63.06 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=50.0
Q ss_pred eEEEEEEeeccC---CceEEEEecCCe-----eee-c--CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803 386 TATLECEVEAFP---LSVRYWEFIDGT-----LIE-H--DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDT 446 (902)
Q Consensus 386 ~v~L~C~a~g~P---~P~v~W~k~~~~-----l~~-~--~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~ 446 (902)
+|+|.|.....+ ...|.|++.... +.. . .. .+.+..... ....+.|+|.+++.+|+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~---~~~~~sL~I~nv~~sD~Gt 78 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN---PIADGALILRNAVQADEGK 78 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC---CCCceEEEEecCccccceE
Confidence 689999887544 447899985321 110 0 00 111111110 0123469999999999999
Q ss_pred EEEEEEe-CCceeEEEEEEEe
Q psy12803 447 YRCISKN-EVDIAKGSLILFE 466 (902)
Q Consensus 447 YtC~A~N-~~G~~~~s~~L~V 466 (902)
|.|.+.+ ..|..++.+.|.|
T Consensus 79 Y~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 79 YKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEEeCCCCCeeeEEEEEe
Confidence 9999998 6777788888776
No 276
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.52 E-value=0.00067 Score=60.32 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=49.7
Q ss_pred EEEEEEeecc-CCceEEEEecCCeeeecCCceEEEeecCC-CceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 387 ATLECEVEAF-PLSVRYWEFIDGTLIEHDGVKYSISDVDK-GSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 387 v~L~C~a~g~-P~P~v~W~k~~~~l~~~~~~~~~~~~~~~-~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
+.|.|.+.+. |.+.|+|++++..+... .. .+....+ +++...++|.|......|...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~--~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA--PT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc--ce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6899999876 88999999988665332 11 2223333 46777888998777777778999999997643
No 277
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.49 E-value=0.00078 Score=62.06 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred eEEEEeccCCCCCeEEEEEEEe-CCceeEEEEEEEe
Q psy12803 432 MQLNISNVNISDFDTYRCISKN-EVDIAKGSLILFE 466 (902)
Q Consensus 432 stL~I~~V~~~DsG~YtC~A~N-~~G~~~~s~~L~V 466 (902)
++|.|.+++.+|.|.|+|.+.| ..|..+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 5699999999999999999999 7888888888877
No 278
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.46 E-value=0.00066 Score=61.84 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=50.9
Q ss_pred CEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 370 P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
|.+...+. ..|.+|++|+|.|.... +...+.|++++...... .. ......+..+.|.|..++.+|+|.|+|
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~-----~~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C 72 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL-----HL--YEKHHGGFQASFPLGPVTPAHAGTYRC 72 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce-----ec--ccccCCeEEEEEEecCCCcccCEEEEE
Confidence 55666554 34889999999997765 55679999887553110 00 000112345679999999999999999
Q ss_pred EEE
Q psy12803 450 ISK 452 (902)
Q Consensus 450 ~A~ 452 (902)
...
T Consensus 73 ~~~ 75 (94)
T cd05711 73 YGS 75 (94)
T ss_pred EEE
Confidence 875
No 279
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.45 E-value=0.0017 Score=58.07 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=50.4
Q ss_pred CceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803 384 GRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458 (902)
Q Consensus 384 G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~ 458 (902)
|+.+.|+|.+ .++|.|.|.|+.++..+.. ...........+.+...++|.+..-...+...++|.|.+..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVA--SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECE--EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceee--eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 6799999976 5779999999988877611 11112233445555667889887655566679999999976543
No 280
>KOG4729|consensus
Probab=97.44 E-value=0.00011 Score=76.93 Aligned_cols=118 Identities=7% Similarity=-0.167 Sum_probs=95.5
Q ss_pred CCCCCcccceeeecCCceEeeccCccc---cCCCcceeeeccceecCCCCC-CCCCceEEEecCCCCCceEeecChhhhc
Q psy12803 543 GLPNRTLDCQVYAVGKPVFHKSTSMKK---ESSGKPVDVIFGAWMKDPHPT-SGNSEKFWMTTDSDPTHLNEYKDKDMFK 618 (902)
Q Consensus 543 ~~~~r~~~C~l~~v~~Pv~~~~~~~~~---~~~~~~~~~~~G~W~~D~~~~-~~~~~~~~~~~~~~~~~~~ey~~~~~~~ 618 (902)
+.-+..++|+.+++.+-++..++.++. +....+.++.-+||.+|+... +....+.| ..+.-..+-++..++++.
T Consensus 121 KYLev~Y~Cvp~~~~~kt~~~p~~~~~~~~~~~~~~~e~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 198 (265)
T KOG4729|consen 121 KYLEVQYGCVPYAFTEKTFCTPSPTDPPRSEIRLECREGRRLAVYSAVMKTSPQKDPETE--IRHECVSSVLPQLLRQCH 198 (265)
T ss_pred hheEEEeccCccccccceEecCCCCCCccCcccchhhhcccccccccccccCCCCcccCC--CCceeecccchhhhhccc
Confidence 334456899999999999999888665 445566688999999999862 12122222 344555677899999999
Q ss_pred ccCCcceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCc
Q psy12803 619 SDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSS 662 (902)
Q Consensus 619 ~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~ 662 (902)
+.+..+.++++...+++|.++|.+.+++|++..++++++|+.++
T Consensus 199 ~~~~ct~~~~~~~~~~~~~~~~~~~~~~n~e~~~~~~~~~~~t~ 242 (265)
T KOG4729|consen 199 AKEGCTLKSDGIKGHCRHGHLHKVYVTVTEEIFSEEAIKGELPS 242 (265)
T ss_pred ccCCceeecCCccccccccceeEEEEEecccccchhhhccccCC
Confidence 99999999999999999999999999999999999999999986
No 281
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.41 E-value=0.00012 Score=67.13 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=44.8
Q ss_pred EcCCeEEEEEecCC-CCCCceEEecCCCcccccC-------------C--ccceecc-CCcEEEEeeeeecCceeEEeec
Q psy12803 304 REGDNVRLRCVATG-HPKPSIIWKTSENKPITLG-------------S--WKDSAVA-SSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 304 ~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~-------------~--~~~~~~~-~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
.+|++|+|.|.... .....+.|+|....++... . .+..... +.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 37999999998865 5566899998643222111 0 1111222 3689999999999999999886
Q ss_pred C
Q psy12803 367 N 367 (902)
Q Consensus 367 N 367 (902)
+
T Consensus 82 ~ 82 (97)
T cd05775 82 T 82 (97)
T ss_pred c
Confidence 6
No 282
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.41 E-value=0.00023 Score=65.08 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=45.3
Q ss_pred EEEcCCeEEEEEecCCC--CCCceEEecCCCc--cc--c-c------C-Cccceec---cCCcEEEEeeeeecCceeEEe
Q psy12803 302 VVREGDNVRLRCVATGH--PKPSIIWKTSENK--PI--T-L------G-SWKDSAV---ASSTLNFTRINRINMGAYMCL 364 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~--~~--~-~------~-~~~~~~~---~~~sL~I~~Vt~~DsG~YtC~ 364 (902)
.|.+|++|+|.|.+.+. ....+.|+|.... +. . . . ..+.... ...+|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998775 5567999986532 11 0 0 0 0111111 123699999999999999998
Q ss_pred ecC
Q psy12803 365 ADN 367 (902)
Q Consensus 365 A~N 367 (902)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 865
No 283
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.40 E-value=0.001 Score=67.16 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=61.4
Q ss_pred ceeeeecCceEEEEEEee-ccCCceEEEEecCCeeeec--CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803 377 RRVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEH--DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFD 445 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~--~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG 445 (902)
..+.|.+|++|+|.|... +...+.|.|+|....+..- .+ .++...... ...++|+|.+|+.+|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s----~~~StItIknVt~sDeG 98 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS----FNESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC----CCcceEEEEeCChhhCe
Confidence 356789999999999985 5567889998875433211 11 112110000 12467999999999999
Q ss_pred EEEEEEEe-CCc-eeEEEEEEEeecCC
Q psy12803 446 TYRCISKN-EVD-IAKGSLILFESNAK 470 (902)
Q Consensus 446 ~YtC~A~N-~~G-~~~~s~~L~V~~~p 470 (902)
.|+|...- ..| ..+...-|.|....
T Consensus 99 cY~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 99 CYTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEEEecCCCCCceeEEEEEEEchh
Confidence 99998754 346 67788888887543
No 284
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.38 E-value=0.0011 Score=60.69 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=50.7
Q ss_pred CceEEEEEEeeccCCc-eEEEEecCCe----eeec---CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 384 GRTATLECEVEAFPLS-VRYWEFIDGT----LIEH---DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P-~v~W~k~~~~----l~~~---~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
|++|+|.|........ .|.|++.... +... .. .+...... ....++|.|.+|+.+|+|.|
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~nv~~~D~G~Y 76 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL----GLNSTSITIWNVTLEDEGCY 76 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC----CCCccEEEEeCCceeeeEEE
Confidence 7899999987654332 6999875431 1100 00 11111111 11245699999999999999
Q ss_pred EEEEEe-CCceeEEEEEEEe
Q psy12803 448 RCISKN-EVDIAKGSLILFE 466 (902)
Q Consensus 448 tC~A~N-~~G~~~~s~~L~V 466 (902)
+|.+.+ ..|..+..+.|.|
T Consensus 77 ~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 77 KCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEEeCCCCCeeeEEEEEE
Confidence 999864 5677777777776
No 285
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.38 E-value=0.0014 Score=58.25 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=54.8
Q ss_pred eeeeecCceEEEEEEeeccC--CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 378 RVGVPIGRTATLECEVEAFP--LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
+-.+..|++++|+|+....+ .+.|+|.-.++.... ....... +|.+.++...|+|.++|.+.-..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~k------tL~~~qv~~qdSG~WtC~V~~~~ 74 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKK------TLNLVQLGPNDSGTWDCIVSVNS 74 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCcc------EEEeceeCcccCCEEEEEEEECc
Confidence 34688999999999996644 449999765544321 1111222 39999999999999999997655
Q ss_pred ceeEEEEEEEeec
Q psy12803 456 DIAKGSLILFESN 468 (902)
Q Consensus 456 G~~~~s~~L~V~~ 468 (902)
-.....+.|.|..
T Consensus 75 k~~~~~~~V~Vl~ 87 (88)
T cd07694 75 SEKTLKLDIKVLA 87 (88)
T ss_pred eEEEEEeeEEEEe
Confidence 5556677776653
No 286
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.36 E-value=0.00035 Score=70.43 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=49.5
Q ss_pred CcEEEEcCCeEEEEEecC-CCCCCceEEecCCCccccc--------CC-cccee-----ccCCcEEEEeeeeecCceeEE
Q psy12803 299 SPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENKPITL--------GS-WKDSA-----VASSTLNFTRINRINMGAYMC 363 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~~~~~--------~~-~~~~~-----~~~~sL~I~~Vt~~DsG~YtC 363 (902)
..++|.+|++|+|.|... +...+.|+|+|.+..+..- .. ..+.. ..+.+|+|.+|+++|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 347899999999999985 6567889999975432211 00 11111 145689999999999999999
Q ss_pred eecC
Q psy12803 364 LADN 367 (902)
Q Consensus 364 ~A~N 367 (902)
....
T Consensus 103 ~F~t 106 (189)
T PHA02987 103 IFNT 106 (189)
T ss_pred EEEe
Confidence 8754
No 287
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.35 E-value=0.00061 Score=62.26 Aligned_cols=70 Identities=23% Similarity=0.229 Sum_probs=47.3
Q ss_pred eeecCceEEEEEEeecc--CCceEEEEecCCe--e---eecC-------CceEEEeecCCCceeeEeEEEEeccCCCCCe
Q psy12803 380 GVPIGRTATLECEVEAF--PLSVRYWEFIDGT--L---IEHD-------GVKYSISDVDKGSYQYIMQLNISNVNISDFD 445 (902)
Q Consensus 380 ~v~~G~~v~L~C~a~g~--P~P~v~W~k~~~~--l---~~~~-------~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG 445 (902)
.+.+|++|+|.|.+... ....+.|++.... + .... ..++...... ....|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-----NTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCChhhCE
Confidence 47899999999998765 5667999876531 1 1100 1123222111 2456999999999999
Q ss_pred EEEEEEEeC
Q psy12803 446 TYRCISKNE 454 (902)
Q Consensus 446 ~YtC~A~N~ 454 (902)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998753
No 288
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.35 E-value=0.0009 Score=54.42 Aligned_cols=66 Identities=26% Similarity=0.321 Sum_probs=46.5
Q ss_pred EEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 387 v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
+.|.|.+.+.+...+.|++.+......... ............+.|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT---RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE---EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999998788899998876544221111 111222233456679999999999999999998876
No 289
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.34 E-value=0.00092 Score=63.12 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=51.9
Q ss_pred EEcCceeeeecCceEEEEEEeecc-CCceEEEEecCC--e--eee--------cCCceEEEeecCCCceeeEeEEEEecc
Q psy12803 373 LIRNRRVGVPIGRTATLECEVEAF-PLSVRYWEFIDG--T--LIE--------HDGVKYSISDVDKGSYQYIMQLNISNV 439 (902)
Q Consensus 373 ~~~p~~~~v~~G~~v~L~C~a~g~-P~P~v~W~k~~~--~--l~~--------~~~~~~~~~~~~~~s~~~~stL~I~~V 439 (902)
...+..+.+.+|++|+|.|..... ....+.|++... . ++. ....++.+..... ....+|+|.++
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~~ 79 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKA---QKSISLTISAL 79 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEecc---CCEEEEEECCC
Confidence 345667789999999999998754 456799997532 1 111 0112333321111 11356999999
Q ss_pred CCCCCeEEEEEEEe
Q psy12803 440 NISDFDTYRCISKN 453 (902)
Q Consensus 440 ~~~DsG~YtC~A~N 453 (902)
+.+|+|.|.|.+..
T Consensus 80 ~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 80 QLEDSAKYFCALST 93 (116)
T ss_pred CHHHCEEEEEEEEC
Confidence 99999999999875
No 290
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.34 E-value=0.0016 Score=59.68 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=51.0
Q ss_pred ceEEEEEEeeccC-CceEEEEecCC---e-eeecC---C--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 385 RTATLECEVEAFP-LSVRYWEFIDG---T-LIEHD---G--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 385 ~~v~L~C~a~g~P-~P~v~W~k~~~---~-l~~~~---~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
++++|.|.....+ ...|.|.+... . +.... + .+...... ....++|.|.+++.+|+|.|+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~----~~~d~sl~i~nv~~~D~G~Y~ 76 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNY----SLLDATIMLENVGFSDIGVYI 76 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCC----CCCccEEEEeCCCccccEEEE
Confidence 3689999987543 34789987532 1 11100 1 11122110 112457999999999999999
Q ss_pred EEEEe-CCceeEEEEEEEe
Q psy12803 449 CISKN-EVDIAKGSLILFE 466 (902)
Q Consensus 449 C~A~N-~~G~~~~s~~L~V 466 (902)
|.+.+ ..|..++++.|.|
T Consensus 77 C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 77 CKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEEeCCCCCeeEEEEEEE
Confidence 99754 6899999998887
No 291
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.33 E-value=0.001 Score=59.21 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=49.3
Q ss_pred EEEEEEeec-cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 387 ATLECEVEA-FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 387 v~L~C~a~g-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
++|.|.+.+ +|...|+|++++..+.. ..........++++...++|.|..-...|...|+|.|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~--~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD--VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC--ceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999986 57789999998877532 222223334456777888899986666667799999998754
No 292
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.31 E-value=0.00022 Score=66.23 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=43.0
Q ss_pred cCCeEEEEEecCCCC------CCceEEecCC--C--c-cc-c-cC-------Cc--cce----eccCCcEEEEeeeeecC
Q psy12803 305 EGDNVRLRCVATGHP------KPSIIWKTSE--N--K-PI-T-LG-------SW--KDS----AVASSTLNFTRINRINM 358 (902)
Q Consensus 305 eGe~v~L~C~a~G~P------~p~v~W~k~~--~--~-~~-~-~~-------~~--~~~----~~~~~sL~I~~Vt~~Ds 358 (902)
.|++|+|.|.....+ ...|.|+|.. . . .+ . .. .. +.. ...+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987643 5689999962 1 1 11 0 00 00 111 12346899999999999
Q ss_pred ceeEEeecC
Q psy12803 359 GAYMCLADN 367 (902)
Q Consensus 359 G~YtC~A~N 367 (902)
|.|.|.+.+
T Consensus 81 G~Y~C~v~~ 89 (106)
T cd05714 81 GRYRCEVID 89 (106)
T ss_pred EEEEEEEEc
Confidence 999999876
No 293
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.30 E-value=0.00047 Score=62.97 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=46.3
Q ss_pred EEEEcCCeEEEEEecCC-CCCCceEEecCCCcc----cc-------cCCccceec-----cCCcEEEEeeeeecCceeEE
Q psy12803 301 IVVREGDNVRLRCVATG-HPKPSIIWKTSENKP----IT-------LGSWKDSAV-----ASSTLNFTRINRINMGAYMC 363 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~----~~-------~~~~~~~~~-----~~~sL~I~~Vt~~DsG~YtC 363 (902)
+.+.+|++|+|.|.... .....+.|+|..... +. ....+.... ...+|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 56889999999999775 456679999865321 10 001112221 12379999999999999999
Q ss_pred eecC
Q psy12803 364 LADN 367 (902)
Q Consensus 364 ~A~N 367 (902)
.+..
T Consensus 82 ~~~~ 85 (98)
T cd05716 82 GVGD 85 (98)
T ss_pred Eccc
Confidence 8865
No 294
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.28 E-value=0.0013 Score=60.53 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=54.1
Q ss_pred EEEEcCceeeeecCceEEEEEEeec-cCCce--EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-E
Q psy12803 371 QILIRNRRVGVPIGRTATLECEVEA-FPLSV--RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-T 446 (902)
Q Consensus 371 ~i~~~p~~~~v~~G~~v~L~C~a~g-~P~P~--v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~ 446 (902)
.+.+.+....+.+|+.++|+|.+.+ .|.+. |.|++.+..+... .+.. ........+++|.+. +..+|.| .
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~---~~~~--~~~~~~~~~stlt~~-~~r~D~g~~ 76 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ---PFGD--NTKSPVNAPATITIT-VDREDHGAN 76 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc---eecc--ccCCCceeEEEEEEe-cchhhCCcE
Confidence 3455556667899999999999975 57776 7999887766331 1111 111112345678876 4455555 9
Q ss_pred EEEEEEeCCcee
Q psy12803 447 YRCISKNEVDIA 458 (902)
Q Consensus 447 YtC~A~N~~G~~ 458 (902)
|+|.|.+.++..
T Consensus 77 ~sC~A~l~l~~~ 88 (100)
T cd05755 77 FSCETELDLRPE 88 (100)
T ss_pred EEEEEEeccCcc
Confidence 999999987654
No 295
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.28 E-value=0.00044 Score=65.15 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=42.7
Q ss_pred cCCeEEEEEecCCCC------------CCceEEecCCC--c--cccc--------CC--cccee------ccCCcEEEEe
Q psy12803 305 EGDNVRLRCVATGHP------------KPSIIWKTSEN--K--PITL--------GS--WKDSA------VASSTLNFTR 352 (902)
Q Consensus 305 eGe~v~L~C~a~G~P------------~p~v~W~k~~~--~--~~~~--------~~--~~~~~------~~~~sL~I~~ 352 (902)
.|++|+|.|...... .+.|.|+|... + ++.. .. .+... ..+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987532 46899998532 1 1110 01 12222 1456899999
Q ss_pred eeeecCceeEEeecC
Q psy12803 353 INRINMGAYMCLADN 367 (902)
Q Consensus 353 Vt~~DsG~YtC~A~N 367 (902)
++.+|+|.|.|.+.+
T Consensus 81 l~~sDsG~Y~C~V~~ 95 (112)
T cd05900 81 LRSNDSGTYRCEVMH 95 (112)
T ss_pred cccccCEEEEEEEec
Confidence 999999999998754
No 296
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.23 E-value=0.00033 Score=64.77 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=48.6
Q ss_pred CCcEEEEcCCeEEEEEecC-CCCCCceEEecCCCc----ccc--cC-----------Cccceecc-----CCcEEEEeee
Q psy12803 298 SSPIVVREGDNVRLRCVAT-GHPKPSIIWKTSENK----PIT--LG-----------SWKDSAVA-----SSTLNFTRIN 354 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~-G~P~p~v~W~k~~~~----~~~--~~-----------~~~~~~~~-----~~sL~I~~Vt 354 (902)
+..+.+.+|++|.|.|... ......+.|++.... .+. .. ..+..... +.+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 5568899999999999988 456668999995441 111 00 01111111 2369999999
Q ss_pred eecCceeEEeecC
Q psy12803 355 RINMGAYMCLADN 367 (902)
Q Consensus 355 ~~DsG~YtC~A~N 367 (902)
.+|+|.|.|.+..
T Consensus 88 ~~DsG~Y~C~v~~ 100 (114)
T PF07686_consen 88 PSDSGTYFCQVST 100 (114)
T ss_dssp GGGEEEEEEEEEE
T ss_pred cCcCEEEEEEEEE
Confidence 9999999998755
No 297
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.19 E-value=0.0004 Score=64.41 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=42.4
Q ss_pred cCCeEEEEEecCCCC------CCceEEecCCCc-----c-c-cc-------C--Cccceec----cCCcEEEEeeeeecC
Q psy12803 305 EGDNVRLRCVATGHP------KPSIIWKTSENK-----P-I-TL-------G--SWKDSAV----ASSTLNFTRINRINM 358 (902)
Q Consensus 305 eGe~v~L~C~a~G~P------~p~v~W~k~~~~-----~-~-~~-------~--~~~~~~~----~~~sL~I~~Vt~~Ds 358 (902)
.|++|+|.|.....| ...|.|+|.... . . .. . ..+.... .+.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999876643 456999996421 0 0 00 0 0122211 134899999999999
Q ss_pred ceeEEeecC
Q psy12803 359 GAYMCLADN 367 (902)
Q Consensus 359 G~YtC~A~N 367 (902)
|.|.|.+.+
T Consensus 81 G~Y~C~v~~ 89 (106)
T cd05877 81 GRYRCEVID 89 (106)
T ss_pred EEEEEEEEe
Confidence 999999865
No 298
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.18 E-value=0.00053 Score=62.77 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCC---CCCceEEecCCCcccc---c------------CCcccee------ccCCcEEEEeeeeecCcee
Q psy12803 306 GDNVRLRCVATGH---PKPSIIWKTSENKPIT---L------------GSWKDSA------VASSTLNFTRINRINMGAY 361 (902)
Q Consensus 306 Ge~v~L~C~a~G~---P~p~v~W~k~~~~~~~---~------------~~~~~~~------~~~~sL~I~~Vt~~DsG~Y 361 (902)
|++|+|.|..... -...|.|+|....... . -..+... ..+.+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999998632 1236889886532110 0 0012111 1234799999999999999
Q ss_pred EEeecC
Q psy12803 362 MCLADN 367 (902)
Q Consensus 362 tC~A~N 367 (902)
+|.+.|
T Consensus 81 ~C~v~~ 86 (100)
T cd05713 81 TCFFQS 86 (100)
T ss_pred EEEEec
Confidence 999987
No 299
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.17 E-value=0.0016 Score=60.61 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=45.6
Q ss_pred eeecCceEEEEEEeeccC-CceEEEEecCCe---------eeecC-----------CceEEEeecCCCceeeEeEEEEec
Q psy12803 380 GVPIGRTATLECEVEAFP-LSVRYWEFIDGT---------LIEHD-----------GVKYSISDVDKGSYQYIMQLNISN 438 (902)
Q Consensus 380 ~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~---------l~~~~-----------~~~~~~~~~~~~s~~~~stL~I~~ 438 (902)
.+.+|++|+|.|.+.... ...+.|++.... +.... ..++.+..... .....|+|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD---SSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC---CCEEEEEECC
Confidence 578999999999987643 457999976532 00000 11222111111 1134699999
Q ss_pred cCCCCCeEEEEEEEe
Q psy12803 439 VNISDFDTYRCISKN 453 (902)
Q Consensus 439 V~~~DsG~YtC~A~N 453 (902)
++.+|+|.|.|...+
T Consensus 79 ~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 79 VKPEDSGTYFCMTVG 93 (107)
T ss_pred CCHHHCEEEEEeEcC
Confidence 999999999999853
No 300
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.16 E-value=0.00046 Score=62.81 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=41.1
Q ss_pred CeEEEEEecCCCC---CCceEEecCCCc---ccc---c-------C--Cccceec----cCCcEEEEeeeeecCceeEEe
Q psy12803 307 DNVRLRCVATGHP---KPSIIWKTSENK---PIT---L-------G--SWKDSAV----ASSTLNFTRINRINMGAYMCL 364 (902)
Q Consensus 307 e~v~L~C~a~G~P---~p~v~W~k~~~~---~~~---~-------~--~~~~~~~----~~~sL~I~~Vt~~DsG~YtC~ 364 (902)
++|+|.|.....+ ...|.|+|.... .+. . . ..+.... .+.+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999987643 447999996542 000 0 0 1111111 345899999999999999998
Q ss_pred ecC
Q psy12803 365 ADN 367 (902)
Q Consensus 365 A~N 367 (902)
+.+
T Consensus 81 v~~ 83 (98)
T cd05718 81 FAT 83 (98)
T ss_pred EEe
Confidence 764
No 301
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.16 E-value=0.0021 Score=55.90 Aligned_cols=69 Identities=25% Similarity=0.279 Sum_probs=48.8
Q ss_pred eEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 386 TATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 386 ~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
.++|.|.+.++ |. ..|.|++++..+.. ...........++++...+.|.|......+...|+|+|....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~-~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTS-GVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCC-CEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999987 54 58999987765322 111112223466788889999998777777789999997753
No 302
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.15 E-value=0.0026 Score=57.72 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=52.3
Q ss_pred CCEEEEcCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803 369 PPQILIRNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446 (902)
Q Consensus 369 ~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~ 446 (902)
+|.+.+...... ++.++|.|.+.++ |.. .++|++++..+..... ........++.+...+.|.|..- +...
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~-~~~~~~~~d~ty~~~s~l~v~~~---~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVE-SGEILPNGDGTYQLWVTLEVPPE---DKAR 74 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECccccc-ccceEECCCCeEEEEEEEEECCC---CCCE
Confidence 455555443322 7789999999996 544 8999888753322111 11222345567777778887653 7789
Q ss_pred EEEEEEeCCc
Q psy12803 447 YRCISKNEVD 456 (902)
Q Consensus 447 YtC~A~N~~G 456 (902)
|+|.+.+..-
T Consensus 75 ytC~V~H~~~ 84 (93)
T cd07698 75 YSCRVEHSGL 84 (93)
T ss_pred EEEEEEeCCC
Confidence 9999988643
No 303
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.10 E-value=0.00064 Score=64.21 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=48.7
Q ss_pred cCCcEEEEcCCeEEEEEecCCC-CCCceEEecCCC--cccc----------cCCccceec-----cCCcEEEEeeeeecC
Q psy12803 297 SSSPIVVREGDNVRLRCVATGH-PKPSIIWKTSEN--KPIT----------LGSWKDSAV-----ASSTLNFTRINRINM 358 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~--~~~~----------~~~~~~~~~-----~~~sL~I~~Vt~~Ds 358 (902)
.+..+.+.+|++|+|.|..... ....+.|+|... .+.. ....+.... ...+|+|.+++.+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3556889999999999998753 456799998532 1110 001122221 123799999999999
Q ss_pred ceeEEeecC
Q psy12803 359 GAYMCLADN 367 (902)
Q Consensus 359 G~YtC~A~N 367 (902)
|.|.|.+..
T Consensus 85 g~Y~C~~~~ 93 (116)
T cd07706 85 AKYFCALST 93 (116)
T ss_pred EEEEEEEEC
Confidence 999999875
No 304
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.08 E-value=0.00083 Score=61.83 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=44.3
Q ss_pred EEEEcCCeEEEEEecCC-CCCCc--eEEecCCCcccccCCcc---ceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803 301 IVVREGDNVRLRCVATG-HPKPS--IIWKTSENKPITLGSWK---DSAVASSTLNFTRINRINMG-AYMCLADN 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G-~P~p~--v~W~k~~~~~~~~~~~~---~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N 367 (902)
..+.+|+.++|.|.+.+ .|.+. |+|||++..+....... .......+|++. +.++|.| .|+|+|.+
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l 83 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETEL 83 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEe
Confidence 44789999999999987 78887 69999776654321100 011122356665 4566666 89999988
No 305
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.08 E-value=0.00075 Score=62.90 Aligned_cols=66 Identities=24% Similarity=0.433 Sum_probs=44.0
Q ss_pred EEEcCCeEEEEEecCCC-CCCceEEecCCCcc--------c-ccC-----------Ccccee--ccC---CcEEEEeeee
Q psy12803 302 VVREGDNVRLRCVATGH-PKPSIIWKTSENKP--------I-TLG-----------SWKDSA--VAS---STLNFTRINR 355 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G~-P~p~v~W~k~~~~~--------~-~~~-----------~~~~~~--~~~---~sL~I~~Vt~ 355 (902)
.|.+|++|+|.|.+.+. ....+.|+|..... + ... ..+... ..+ ..|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998763 34579999865420 0 000 011111 111 2599999999
Q ss_pred ecCceeEEeecC
Q psy12803 356 INMGAYMCLADN 367 (902)
Q Consensus 356 ~DsG~YtC~A~N 367 (902)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998753
No 306
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.06 E-value=0.0017 Score=57.77 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=47.1
Q ss_pred cEEEEcCCeEEEEEecCCC--CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803 300 PIVVREGDNVRLRCVATGH--PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~--P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
+-.+..|++++|+|..... |.+.|+|...++.... .......+|.+..++..|+|.++|.+.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~~~~~ktL~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----ILNQDKKTLNLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----eccCCccEEEeceeCcccCCEEEEEEE
Confidence 3467899999999999664 4559999876654321 122345689999999999999999874
No 307
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.06 E-value=0.00078 Score=61.56 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=40.8
Q ss_pred CCeEEEEEecCCCCC-CceEEecCCCc---ccc-c---------CC--cccee----ccCCcEEEEeeeeecCceeEEee
Q psy12803 306 GDNVRLRCVATGHPK-PSIIWKTSENK---PIT-L---------GS--WKDSA----VASSTLNFTRINRINMGAYMCLA 365 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~-p~v~W~k~~~~---~~~-~---------~~--~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A 365 (902)
|++|+|.|....... -.|.|+|.... .+. . .. .+... ..+.+|+|.+|+.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998665332 36999986432 100 0 00 11111 13458999999999999999987
Q ss_pred cC
Q psy12803 366 DN 367 (902)
Q Consensus 366 ~N 367 (902)
.+
T Consensus 81 ~~ 82 (97)
T cd05846 81 NT 82 (97)
T ss_pred Ee
Confidence 65
No 308
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.02 E-value=0.0011 Score=63.04 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=47.3
Q ss_pred ecCCcEEEEcCCeEEEEEecCCCC------CCceEEecCCCcc-----cc-cC-------C--cccee-----ccCCcEE
Q psy12803 296 FSSSPIVVREGDNVRLRCVATGHP------KPSIIWKTSENKP-----IT-LG-------S--WKDSA-----VASSTLN 349 (902)
Q Consensus 296 ~~~~~v~v~eGe~v~L~C~a~G~P------~p~v~W~k~~~~~-----~~-~~-------~--~~~~~-----~~~~sL~ 349 (902)
..|+.+.+.+|++|+|.|...... ...+.|+|..... .. .. . .+... ..+.+|+
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 345668899999999999865321 3458999865321 10 00 0 11111 1124799
Q ss_pred EEeeeeecCceeEEeecC
Q psy12803 350 FTRINRINMGAYMCLADN 367 (902)
Q Consensus 350 I~~Vt~~DsG~YtC~A~N 367 (902)
|.+++.+|+|.|.|.+..
T Consensus 84 I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 84 ISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred EccCChhhCeEEEEEEEc
Confidence 999999999999998744
No 309
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.01 E-value=0.00083 Score=59.53 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=40.2
Q ss_pred EEEEEecCC-CCCCceEEecCCCcccccCCcc----ceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWK----DSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~----~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.| +|.+.|+|+|++.++....... ......++|.|.....+|...|+|+|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~ 65 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDH 65 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcC
Confidence 689999887 8999999999887664321110 0111224677765555566689999998
No 310
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.97 E-value=0.0043 Score=59.00 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=49.0
Q ss_pred cCceeeeecCceEEEEEEeeccC------CceEEEEecCCe-----eee-cC-C--------ceEEEeecCCCceeeEeE
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFP------LSVRYWEFIDGT-----LIE-HD-G--------VKYSISDVDKGSYQYIMQ 433 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P------~P~v~W~k~~~~-----l~~-~~-~--------~~~~~~~~~~~s~~~~st 433 (902)
.|..+.+.+|++|+|.|...... ...+.|++.... +.. .. . .++..... .....+.
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~---~~~~~~s 81 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD---LGKKNCS 81 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC---CCCCEEE
Confidence 35667899999999999875332 346899976421 111 00 0 12222101 1122456
Q ss_pred EEEeccCCCCCeEEEEEEEeC
Q psy12803 434 LNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 434 L~I~~V~~~DsG~YtC~A~N~ 454 (902)
|.|.+++.+|+|.|.|.+...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999988664
No 311
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.96 E-value=0.00091 Score=60.38 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=42.5
Q ss_pred EcCCeEEEEEecCCC-C-CCceEEecCCCcccccCC-ccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803 304 REGDNVRLRCVATGH-P-KPSIIWKTSENKPITLGS-WKDSAVASS------TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 304 ~eGe~v~L~C~a~G~-P-~p~v~W~k~~~~~~~~~~-~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..|+.++|.|.+.|. | .+.|+|++++..+..... .......++ .|.|.....+|.+.|+|+|.+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h 83 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTH 83 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEe
Confidence 468999999999996 6 468999997765533221 122222333 344444444599999999988
No 312
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.92 E-value=0.0011 Score=53.86 Aligned_cols=59 Identities=32% Similarity=0.593 Sum_probs=43.0
Q ss_pred EEEEEecCCCCCCceEEecCCCcccccC-----CccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATGHPKPSIIWKTSENKPITLG-----SWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G~P~p~v~W~k~~~~~~~~~-----~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.+.+...+.|++.+....... ...........|.|.+++.+|+|.|.|.+.+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 64 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASN 64 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEec
Confidence 4789999988888999999765432211 1112223345799999999999999999876
No 313
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.90 E-value=0.0033 Score=58.31 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=45.6
Q ss_pred eeecCceEEEEEEeeccCCceEEEEecCCe-------eeecC-------------CceEEEeecCCCceeeEeEEEEecc
Q psy12803 380 GVPIGRTATLECEVEAFPLSVRYWEFIDGT-------LIEHD-------------GVKYSISDVDKGSYQYIMQLNISNV 439 (902)
Q Consensus 380 ~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~-------l~~~~-------------~~~~~~~~~~~~s~~~~stL~I~~V 439 (902)
.+.+|++|+|.|.+...-...+.|++.... +.... ..++..... .....|.|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~-----~~~~~L~I~~~ 76 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS-----SNSFVLTLKNF 76 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec-----CCEEEEEECCC
Confidence 367899999999986655567999976532 11100 011211111 12456999999
Q ss_pred CCCCCeEEEEEEEe
Q psy12803 440 NISDFDTYRCISKN 453 (902)
Q Consensus 440 ~~~DsG~YtC~A~N 453 (902)
+.+|+|.|.|.+.+
T Consensus 77 ~~sDsgtY~Ca~~~ 90 (104)
T cd05720 77 QKENEGYYFCSVAS 90 (104)
T ss_pred CHHHCEEEEEEEcc
Confidence 99999999998764
No 314
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.85 E-value=0.0013 Score=61.86 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=42.1
Q ss_pred cCCeEEEEEecCCCC----------CCceEEecCCC--cc--cc--------cCC--cccee------ccCCcEEEEeee
Q psy12803 305 EGDNVRLRCVATGHP----------KPSIIWKTSEN--KP--IT--------LGS--WKDSA------VASSTLNFTRIN 354 (902)
Q Consensus 305 eGe~v~L~C~a~G~P----------~p~v~W~k~~~--~~--~~--------~~~--~~~~~------~~~~sL~I~~Vt 354 (902)
.|++|+|.|.....+ ...|.|+|... .. +. ... .+... ..+.+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999987643 36699999632 11 10 000 12111 133579999999
Q ss_pred eecCceeEEeecC
Q psy12803 355 RINMGAYMCLADN 367 (902)
Q Consensus 355 ~~DsG~YtC~A~N 367 (902)
.+|+|.|.|.+..
T Consensus 81 ~sD~G~Y~C~v~~ 93 (110)
T cd05878 81 SSDSGVYRCEVMH 93 (110)
T ss_pred hhhCEEEEEEEEe
Confidence 9999999998754
No 315
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.84 E-value=0.01 Score=54.27 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred ceEEEEEEeecc-CCceEEEEecCC----eeeec---CC--------ceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 385 RTATLECEVEAF-PLSVRYWEFIDG----TLIEH---DG--------VKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 385 ~~v~L~C~a~g~-P~P~v~W~k~~~----~l~~~---~~--------~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
+.++|.|..... ....|.|.|... .+..- .+ .+....... ...++|.|.+|+.+|+|.|+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~----~~d~sI~i~nvt~~D~G~Y~ 76 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST----REDMSLSFNNATEEDVGLYC 76 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC----CCccEEEEcCCCcccCEEEE
Confidence 468899987532 355788987643 11110 01 111111110 12367999999999999999
Q ss_pred EEEEeC-CceeEEEEEEE
Q psy12803 449 CISKNE-VDIAKGSLILF 465 (902)
Q Consensus 449 C~A~N~-~G~~~~s~~L~ 465 (902)
|.+.+- .|..++.+.|.
T Consensus 77 C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 77 CSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred EEEEeCCCCCeEEEEEEE
Confidence 999774 67777776653
No 316
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.81 E-value=0.0051 Score=58.23 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCEEEE-cCceeeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC-C
Q psy12803 369 PPQILI-RNRRVGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD-F 444 (902)
Q Consensus 369 ~P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D-s 444 (902)
+|.+.+ .+....+.+++.++|.|.+.++ |. ..|.|++++..+...............++|...+.|.|......| .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 344444 3444445567789999999986 55 378999987665432111111222223678888999998765544 4
Q ss_pred eEEEEEEEeCCceeE
Q psy12803 445 DTYRCISKNEVDIAK 459 (902)
Q Consensus 445 G~YtC~A~N~~G~~~ 459 (902)
-.|+|.+........
T Consensus 82 ~~ytC~V~H~g~~~~ 96 (115)
T cd05769 82 NTFTCIVQFYGGTDT 96 (115)
T ss_pred CeEEEEEEEeCCccc
Confidence 589999987655444
No 317
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.77 E-value=0.0017 Score=60.28 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=44.3
Q ss_pred EEEcCCeEEEEEecCCCCCCceEEecCCCc----c---cccC---C----------cccee---ccCCcEEEEeeeeecC
Q psy12803 302 VVREGDNVRLRCVATGHPKPSIIWKTSENK----P---ITLG---S----------WKDSA---VASSTLNFTRINRINM 358 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~----~---~~~~---~----------~~~~~---~~~~sL~I~~Vt~~Ds 358 (902)
.+.+|++|+|.|.+.......+.|+|.... + +... . .+... .....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 367899999999987654567999986532 1 1000 0 01111 1123699999999999
Q ss_pred ceeEEeecC
Q psy12803 359 GAYMCLADN 367 (902)
Q Consensus 359 G~YtC~A~N 367 (902)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998754
No 318
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.77 E-value=0.0034 Score=57.86 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=56.6
Q ss_pred CEEEE-cCceeeeecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeE
Q psy12803 370 PQILI-RNRRVGVPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446 (902)
Q Consensus 370 P~i~~-~p~~~~v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~ 446 (902)
|.+.+ .+.......++.++|.|.+.++ | ...|.|++++..+... ..........+++|...+.|.+..-...+...
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSG-VQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECccc-EeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 44444 3333345567889999999986 5 4588999887765321 11111223446788888899887766556679
Q ss_pred EEEEEEeCC
Q psy12803 447 YRCISKNEV 455 (902)
Q Consensus 447 YtC~A~N~~ 455 (902)
|+|.+....
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999998764
No 319
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.73 E-value=0.0051 Score=56.30 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=53.5
Q ss_pred cCceeeeecCceEEEEEEeecc--CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 375 RNRRVGVPIGRTATLECEVEAF--PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~--P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
.|....+..++.++|.|.+.++ |. ..|+|+++++........ ......+++|...+.|.+..-...+.-.|+|.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V 82 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PPESHNNATLSVTSTLNVSTDDWISGDTFQCKV 82 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence 3444456678999999999998 53 378999987544321111 123356678888888988765444445899999
Q ss_pred EeCC
Q psy12803 452 KNEV 455 (902)
Q Consensus 452 ~N~~ 455 (902)
....
T Consensus 83 ~H~~ 86 (96)
T cd07696 83 THPD 86 (96)
T ss_pred ECCC
Confidence 8764
No 320
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.70 E-value=0.011 Score=54.13 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=49.5
Q ss_pred ceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee--EEE
Q psy12803 385 RTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA--KGS 461 (902)
Q Consensus 385 ~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~--~~s 461 (902)
....+.|.+ .|.|.+.|.|+++.. ...........++.+...++|.+......|.-.|+|+|.|..-.. ..+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~-----~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~ 90 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLG-----GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS 90 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCC-----CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 457789998 588999999987611 111222233445566778889887655555569999999987444 344
Q ss_pred EEE
Q psy12803 462 LIL 464 (902)
Q Consensus 462 ~~L 464 (902)
+.|
T Consensus 91 ~~L 93 (95)
T cd05719 91 VTL 93 (95)
T ss_pred EEe
Confidence 444
No 321
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.69 E-value=0.0029 Score=56.27 Aligned_cols=58 Identities=16% Similarity=0.350 Sum_probs=37.1
Q ss_pred EEEEEecCC-CCCCceEEecCCCcccccCCccceeccC-C------cEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVAS-S------TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~------sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.+ +|.+.|+|++++..+.... .......+ + .|.|.....+|...|+|+|.+
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h 67 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGH 67 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEEC
Confidence 689999998 6999999999876543221 11111222 2 344434444566789999988
No 322
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.67 E-value=0.0028 Score=60.13 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=46.5
Q ss_pred cCCcEEEEcCCeEEEEEecCCCC--CCceEEecCCC--cccc---c---------C---Cccceec--c-C--CcEEEEe
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHP--KPSIIWKTSEN--KPIT---L---------G---SWKDSAV--A-S--STLNFTR 352 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P--~p~v~W~k~~~--~~~~---~---------~---~~~~~~~--~-~--~sL~I~~ 352 (902)
.+..+.+.+|++|+|.|.....- ...+.|+|... .+.. . . ..+.... . . ..|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45567899999999999876532 45699998542 1100 0 0 0111111 1 1 2699999
Q ss_pred eeeecCceeEEeecC
Q psy12803 353 INRINMGAYMCLADN 367 (902)
Q Consensus 353 Vt~~DsG~YtC~A~N 367 (902)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998753
No 323
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.66 E-value=0.0073 Score=55.09 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=50.8
Q ss_pred ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCcee
Q psy12803 382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIA 458 (902)
Q Consensus 382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~ 458 (902)
...+.++|.|.+.++ |. ..|+|++++..+.. ............++|...+.|.|..-...+...|+|.+.......
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~-~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATL-VAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcC-ceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 345679999999986 64 47899887765422 111111222344578888889888655556679999998875443
No 324
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.66 E-value=0.0028 Score=56.12 Aligned_cols=58 Identities=21% Similarity=0.430 Sum_probs=36.3
Q ss_pred EEEEEecCC-CCCCceEEecCCCcccccCCccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVASS------TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.|.|.+.+ +|.+.|+|+|++..+.... .......++ .|.+.....+|...|+|+|.|
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h 66 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDH 66 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeC
Confidence 689999987 6999999999876553211 111111222 344433334455699999988
No 325
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.63 E-value=0.014 Score=54.99 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=50.6
Q ss_pred eeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCC-CceeeEeEEEEeccCCCCCe-EEEEEEEeC
Q psy12803 379 VGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDK-GSYQYIMQLNISNVNISDFD-TYRCISKNE 454 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~-~s~~~~stL~I~~V~~~DsG-~YtC~A~N~ 454 (902)
..+..|+.++|.|.+.++ |. ..++|++++..+.. ...... ...+ ++|...+.|.+.. ...|.+ .|+|.+...
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~-~~~~~~--p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA-EQPNIT--PEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc-ccccee--eCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence 345578889999999886 54 58999998877643 222221 1233 4788888998885 444444 599999887
Q ss_pred Cc
Q psy12803 455 VD 456 (902)
Q Consensus 455 ~G 456 (902)
..
T Consensus 92 ~l 93 (111)
T cd05772 92 TL 93 (111)
T ss_pred CC
Confidence 53
No 326
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.59 E-value=0.0035 Score=55.78 Aligned_cols=59 Identities=24% Similarity=0.420 Sum_probs=37.5
Q ss_pred EEEEEecCC-CCCCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803 309 VRLRCVATG-HPKPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 309 v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
++|.|.+.+ +|...|+|+|++..+............+ ++|.|.....+|...|+|++.+
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h 67 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDH 67 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEec
Confidence 689999998 8889999999877643221111111111 2455544444556789999988
No 327
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.59 E-value=0.025 Score=51.54 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=48.2
Q ss_pred ecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 382 PIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 382 ~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
..++.++|.|.+.++ |. ..++|.+++..+.. ...........+++|...+.|.|.. ++...|+|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~-~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD-GVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccC-ceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 346668999999986 64 47899988766532 1112223446667888888888864 35559999997753
No 328
>PHA03376 BARF1; Provisional
Probab=96.57 E-value=0.018 Score=58.14 Aligned_cols=79 Identities=20% Similarity=0.155 Sum_probs=48.5
Q ss_pred eeeeecCceEEEEEEee---ccCCceEEEEec----CCeeeecCCceEEEeecCC-Ccee-----eEeEEEEeccCCCCC
Q psy12803 378 RVGVPIGRTATLECEVE---AFPLSVRYWEFI----DGTLIEHDGVKYSISDVDK-GSYQ-----YIMQLNISNVNISDF 444 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~---g~P~P~v~W~k~----~~~l~~~~~~~~~~~~~~~-~s~~-----~~stL~I~~V~~~Ds 444 (902)
.+.+..|+.+.|.|... ..+.-.|.|++. ...++...+......+... +... -+.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 45678899999999765 225568999984 3333322221111110000 0000 134699999999999
Q ss_pred eEEEEEEEeCCc
Q psy12803 445 DTYRCISKNEVD 456 (902)
Q Consensus 445 G~YtC~A~N~~G 456 (902)
|.|+|..+-...
T Consensus 100 GtY~C~fQkge~ 111 (221)
T PHA03376 100 GNYLCRMKLGET 111 (221)
T ss_pred ceEEEEEEcCCC
Confidence 999999976543
No 329
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.56 E-value=0.0028 Score=58.38 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=39.9
Q ss_pred eEEEEEecCCCC---CCceEEecCCCc----ccc---c--C-----C--cccee-----ccCCcEEEEeeeeecCceeEE
Q psy12803 308 NVRLRCVATGHP---KPSIIWKTSENK----PIT---L--G-----S--WKDSA-----VASSTLNFTRINRINMGAYMC 363 (902)
Q Consensus 308 ~v~L~C~a~G~P---~p~v~W~k~~~~----~~~---~--~-----~--~~~~~-----~~~~sL~I~~Vt~~DsG~YtC 363 (902)
+|+|.|...... ...|.|+|.... .+. . . . .+... ..+.+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999976543 447999985322 110 0 0 0 11111 124589999999999999999
Q ss_pred eecCC
Q psy12803 364 LADNV 368 (902)
Q Consensus 364 ~A~N~ 368 (902)
.+.++
T Consensus 82 ~v~~~ 86 (100)
T cd05888 82 RVITF 86 (100)
T ss_pred EEEeC
Confidence 98763
No 330
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.53 E-value=0.012 Score=55.96 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=48.2
Q ss_pred cCceeeeecCceEEEEEEeeccC--CceEEEEecCC--ee--e--ecC-----------CceEEEeecCCCceeeEeEEE
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFP--LSVRYWEFIDG--TL--I--EHD-----------GVKYSISDVDKGSYQYIMQLN 435 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P--~P~v~W~k~~~--~l--~--~~~-----------~~~~~~~~~~~~s~~~~stL~ 435 (902)
.+....+.+|++|+|.|.....- ...+.|++... .+ + ... ..++....... .....|.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~ 79 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTS---KSTVYLQ 79 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEcc---CCEEEEE
Confidence 34556789999999999876543 45699997642 11 1 000 01222211111 1234699
Q ss_pred EeccCCCCCeEEEEEEEe
Q psy12803 436 ISNVNISDFDTYRCISKN 453 (902)
Q Consensus 436 I~~V~~~DsG~YtC~A~N 453 (902)
|.+++.+|+|.|.|.+..
T Consensus 80 I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 80 LNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ECCCCHHHCEEEEEEEEc
Confidence 999999999999998865
No 331
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.53 E-value=0.0053 Score=56.89 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=51.6
Q ss_pred cCceeeeecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeec--CCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 375 RNRRVGVPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDV--DKGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~--~~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
.+....+..+..++|.|.+.++ |.. .++|++++..+............. .+++|...+.|.|..-...+...|+|+
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 3333445567899999999987 433 679998877653221111111111 257788888898855444455689999
Q ss_pred EEeCC
Q psy12803 451 SKNEV 455 (902)
Q Consensus 451 A~N~~ 455 (902)
|....
T Consensus 87 V~H~~ 91 (102)
T cd05768 87 VGHEA 91 (102)
T ss_pred eEeCC
Confidence 97754
No 332
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.49 E-value=0.0039 Score=57.10 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=41.6
Q ss_pred CeEEEEEecCC-CCCCceEEecCCCc---cccc----------CC--cccee----ccCCcEEEEeeeeecCceeEEeec
Q psy12803 307 DNVRLRCVATG-HPKPSIIWKTSENK---PITL----------GS--WKDSA----VASSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 307 e~v~L~C~a~G-~P~p~v~W~k~~~~---~~~~----------~~--~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
++++|.|.... ....+|+|.|.... .+.. .. .+... ..+.+|.|.+|+.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999764 34567889986431 1110 00 11111 135799999999999999999987
Q ss_pred CCC
Q psy12803 367 NVP 369 (902)
Q Consensus 367 N~~ 369 (902)
.+|
T Consensus 81 t~P 83 (96)
T cd05889 81 TYP 83 (96)
T ss_pred eCC
Confidence 744
No 333
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.47 E-value=0.027 Score=51.28 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=49.2
Q ss_pred eecCceEEEEEEeecc-C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 381 VPIGRTATLECEVEAF-P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 381 v~~G~~v~L~C~a~g~-P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
+..|+..+|.|.|.++ | ...|+|++++..+. ...........+++|+..+.|.|. ..+.-.|+|.+....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~--~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP--KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC--CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 3457778999999986 5 34789998877654 222223445667788888888876 456668999998753
No 334
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.44 E-value=0.014 Score=51.54 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=48.9
Q ss_pred cCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 383 IGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 383 ~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
.++.+.|.|.+.++ |.. .|.|++++..+.... .........++.|...+.|.+. ..+...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~-~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGV-ETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTE-EEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeee-eecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48899999999986 544 799988776653211 1111222567888888899988 4555589999988654
No 335
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.42 E-value=0.0047 Score=58.50 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=21.1
Q ss_pred cCCcEEEEeeeeecCceeEEeecC
Q psy12803 344 ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 344 ~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.+|.|.+++.+|+|.|.|.+.+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~ 100 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMH 100 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEE
Confidence 356899999999999999998755
No 336
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=96.41 E-value=0.0047 Score=56.53 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=40.8
Q ss_pred CeEEEEEecCC-CCCCceEEecCCCc---ccccC----------C--cccee----ccCCcEEEEeeeeecCceeEEeec
Q psy12803 307 DNVRLRCVATG-HPKPSIIWKTSENK---PITLG----------S--WKDSA----VASSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 307 e~v~L~C~a~G-~P~p~v~W~k~~~~---~~~~~----------~--~~~~~----~~~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
++|+|.|.... ....+|+|.|.... .+..- . .+... ..+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 46899999774 33457999885321 11100 0 11111 235699999999999999999987
Q ss_pred CC
Q psy12803 367 NV 368 (902)
Q Consensus 367 N~ 368 (902)
++
T Consensus 81 tf 82 (96)
T cd05887 81 TF 82 (96)
T ss_pred eC
Confidence 63
No 337
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.37 E-value=0.0032 Score=61.43 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=36.0
Q ss_pred EEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCCCC
Q psy12803 433 QLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAKTP 472 (902)
Q Consensus 433 tL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p~~ 472 (902)
+|.|.+++.+|+|.|+|.+.+..+.....++|.|..+|.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v 41 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV 41 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence 4999999999999999999999999999999999876554
No 338
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.34 E-value=0.0034 Score=58.98 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=40.2
Q ss_pred CCeEEEEEecCCCC-------CCceEEecCC-----Ccc--cc----------cCCccceec------cCCcEEEEeeee
Q psy12803 306 GDNVRLRCVATGHP-------KPSIIWKTSE-----NKP--IT----------LGSWKDSAV------ASSTLNFTRINR 355 (902)
Q Consensus 306 Ge~v~L~C~a~G~P-------~p~v~W~k~~-----~~~--~~----------~~~~~~~~~------~~~sL~I~~Vt~ 355 (902)
|++|+|.|..+-.| .+.|.|.|.. ... .. .-..+.... .+.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999955322 4689999852 111 00 001122221 245899999999
Q ss_pred ecCceeEEeecC
Q psy12803 356 INMGAYMCLADN 367 (902)
Q Consensus 356 ~DsG~YtC~A~N 367 (902)
+|+|.|.|.+..
T Consensus 82 ~D~G~Y~C~v~~ 93 (110)
T cd05902 82 SDSGTYRCEVVL 93 (110)
T ss_pred HHCEEEEEEEEE
Confidence 999999998754
No 339
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.31 E-value=0.035 Score=50.56 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=49.5
Q ss_pred eecCceEEEEEEeecc-CCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 381 VPIGRTATLECEVEAF-PLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 381 v~~G~~v~L~C~a~g~-P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
+.+++.++|.|.+.++ |.. .+.|++++..+... ..........+++|...+.|.+.. ++...|+|.+.....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l 84 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG-VVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSL 84 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC-ceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCC
Confidence 3468899999999986 544 78999888765432 111123345566788888887753 455699999987654
No 340
>KOG1480|consensus
Probab=96.28 E-value=0.0031 Score=74.76 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=97.5
Q ss_pred eeecCCcEEEEcCCeEEEEEecCCCCCC----ceEEecCCCcccccCCc--cceeccCCcEEEEeeeeecCc---eeEE-
Q psy12803 294 HIFSSSPIVVREGDNVRLRCVATGHPKP----SIIWKTSENKPITLGSW--KDSAVASSTLNFTRINRINMG---AYMC- 363 (902)
Q Consensus 294 ~i~~~~~v~v~eGe~v~L~C~a~G~P~p----~v~W~k~~~~~~~~~~~--~~~~~~~~sL~I~~Vt~~DsG---~YtC- 363 (902)
.+..+.+..+..+..+.|.|.+...+.. .-.|.+........... .-.....-++.|.....++.+ .|.|
T Consensus 27 ~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQ 106 (909)
T KOG1480|consen 27 FTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQ 106 (909)
T ss_pred eeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeee
Confidence 3456667778899999999998764432 23465543221111000 000001112333333333333 3655
Q ss_pred -eecC----------------CCCEEEEcCceeeeecCceEEEEEEe-eccCCceEEEEecCCeeeecCCceEEEeecCC
Q psy12803 364 -LADN----------------VPPQILIRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDK 425 (902)
Q Consensus 364 -~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~ 425 (902)
.|.. ..-.|...+.-+.|.++..+.|.|.. ++.|...++|++++..+.. ....+. . ..
T Consensus 107 c~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~-~--~d 182 (909)
T KOG1480|consen 107 CVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIR-A--SD 182 (909)
T ss_pred eeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccchh-h--hc
Confidence 4444 12233444555778888888998865 6889999999887765544 222211 1 12
Q ss_pred CceeeEeEEEEeccCCCCCeEEEEEEEeCCcee---EEEEEEEeec
Q psy12803 426 GSYQYIMQLNISNVNISDFDTYRCISKNEVDIA---KGSLILFESN 468 (902)
Q Consensus 426 ~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~---~~s~~L~V~~ 468 (902)
+. |+|..+...|.|+|+|+|.|.++.. ...+.++|..
T Consensus 183 ~~------li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~g 222 (909)
T KOG1480|consen 183 HN------LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNG 222 (909)
T ss_pred CC------ccccchhhhhcccceeeeehhhccccccceEEEEEEcC
Confidence 22 9999999999999999999988754 3555666544
No 341
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.25 E-value=0.015 Score=50.21 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=38.4
Q ss_pred eEEEEEEeeccCCc--eEEEEecCC----eeee-c-----------CCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 386 TATLECEVEAFPLS--VRYWEFIDG----TLIE-H-----------DGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 386 ~v~L~C~a~g~P~P--~v~W~k~~~----~l~~-~-----------~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
+|+|.|.+.....+ .+.|++... .++. . ...++...... .....+|.|.+++.+|+|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~i~~~~~~D~G~Y 77 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT---SKNDVSLTISNLRVEDTGTY 77 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC---cCCEEEEEEcCCCHHHCEEE
Confidence 47899998766543 789987652 1111 1 01122222111 01235699999999999999
Q ss_pred EEEE
Q psy12803 448 RCIS 451 (902)
Q Consensus 448 tC~A 451 (902)
.|.+
T Consensus 78 ~C~v 81 (81)
T smart00406 78 YCAV 81 (81)
T ss_pred EEcC
Confidence 9963
No 342
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.25 E-value=0.014 Score=54.93 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=26.0
Q ss_pred EEEEcCCeEEEEEecCC-CCC-CceEEecCCCccc
Q psy12803 301 IVVREGDNVRLRCVATG-HPK-PSIIWKTSENKPI 333 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~~ 333 (902)
..+..|+.++|.|.+.+ +|. .+|+|+|++..+.
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 34557889999999999 564 6899999876653
No 343
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.23 E-value=0.028 Score=51.35 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=49.0
Q ss_pred ceEEEEEEee-ccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 385 RTATLECEVE-AFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 385 ~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
..+.+.|.+. +.|.+.|.|+++... ..........++.+...++|.+......|.-.|+|+|.|..-.....+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g-----~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG-----NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC-----CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 3578999775 779999999876211 1112222333455567788988766666666999999998754444443
Q ss_pred E
Q psy12803 464 L 464 (902)
Q Consensus 464 L 464 (902)
+
T Consensus 91 ~ 91 (95)
T cd07703 91 V 91 (95)
T ss_pred E
Confidence 3
No 344
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.21 E-value=0.0085 Score=55.20 Aligned_cols=61 Identities=20% Similarity=0.459 Sum_probs=39.0
Q ss_pred eEEEEEecCC-CCC---CceEEecCCC--c-ccc-cC-----------Cccce----eccCCcEEEEeeeeecCceeEEe
Q psy12803 308 NVRLRCVATG-HPK---PSIIWKTSEN--K-PIT-LG-----------SWKDS----AVASSTLNFTRINRINMGAYMCL 364 (902)
Q Consensus 308 ~v~L~C~a~G-~P~---p~v~W~k~~~--~-~~~-~~-----------~~~~~----~~~~~sL~I~~Vt~~DsG~YtC~ 364 (902)
+|+|.|.... .|. .+|+|.+... . .+. .. ..+.. ...+.+|+|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6899999874 221 2599987521 1 110 00 01111 12347999999999999999999
Q ss_pred ecCC
Q psy12803 365 ADNV 368 (902)
Q Consensus 365 A~N~ 368 (902)
+.++
T Consensus 82 v~t~ 85 (99)
T cd05886 82 FATF 85 (99)
T ss_pred EEeC
Confidence 9884
No 345
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.03 E-value=0.039 Score=50.43 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=45.8
Q ss_pred cCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 383 IGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 383 ~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
..+.++|.|.+.++ |. ..|+|++++.. .. ...........++.|...+.|.|....-...-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~-~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TS-GVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CC-CcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999986 53 47899887765 21 111111111225778888889887643333557999998754
No 346
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.95 E-value=0.0073 Score=53.94 Aligned_cols=29 Identities=34% Similarity=0.736 Sum_probs=23.2
Q ss_pred EcCCeEEEEEecCC-CCCCceEEecCCCcc
Q psy12803 304 REGDNVRLRCVATG-HPKPSIIWKTSENKP 332 (902)
Q Consensus 304 ~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~ 332 (902)
.+|+.+.|.|.+.+ +|.+.|+|+.++...
T Consensus 12 ~~~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 12 GEGEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp SSTEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ccceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 33789999998765 999999999987765
No 347
>KOG1924|consensus
Probab=95.73 E-value=0.041 Score=65.41 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=9.6
Q ss_pred eEEEecCCCCCceEee-cChhhhc
Q psy12803 596 KFWMTTDSDPTHLNEY-KDKDMFK 618 (902)
Q Consensus 596 ~~~~~~~~~~~~~~ey-~~~~~~~ 618 (902)
.||.++... ..++|| .|+..|+
T Consensus 964 eYyaFd~kk-ysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 964 EYYAFDPKK-YSMEEFFADIRTFR 986 (1102)
T ss_pred HHeecCccc-CcHHHHHHHHHHHH
Confidence 355444322 233443 5555554
No 348
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.71 E-value=0.01 Score=51.24 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=36.9
Q ss_pred eEEEEEecCCCCC--CceEEecCCC--c--ccc-c-----------CCccceec-----cCCcEEEEeeeeecCceeEEe
Q psy12803 308 NVRLRCVATGHPK--PSIIWKTSEN--K--PIT-L-----------GSWKDSAV-----ASSTLNFTRINRINMGAYMCL 364 (902)
Q Consensus 308 ~v~L~C~a~G~P~--p~v~W~k~~~--~--~~~-~-----------~~~~~~~~-----~~~sL~I~~Vt~~DsG~YtC~ 364 (902)
+|+|.|.+..... ..+.|++... . .+. . ...+.... ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999887544 3789998542 1 111 0 01111111 123799999999999999996
Q ss_pred e
Q psy12803 365 A 365 (902)
Q Consensus 365 A 365 (902)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 349
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.71 E-value=0.033 Score=51.28 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=50.8
Q ss_pred cCceeeeecCceEEEEEEeecc--C-CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEE
Q psy12803 375 RNRRVGVPIGRTATLECEVEAF--P-LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCIS 451 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~--P-~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A 451 (902)
.|....+..+..++|.|.+.++ | ...|.|.+++.. +..........+++|...+.|.|..-.-.-...|+|.+
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~----~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V 85 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK----EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTV 85 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc----CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEE
Confidence 3444445578899999999984 4 347899888764 11111122345678888899988744333334799999
Q ss_pred EeCC
Q psy12803 452 KNEV 455 (902)
Q Consensus 452 ~N~~ 455 (902)
....
T Consensus 86 ~H~~ 89 (99)
T cd04986 86 THPE 89 (99)
T ss_pred ECCC
Confidence 8764
No 350
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.52 E-value=0.033 Score=46.88 Aligned_cols=51 Identities=25% Similarity=0.433 Sum_probs=35.6
Q ss_pred EcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 304 REGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 304 ~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..|.+|+|+|..... .+.|.+++..+.. .+..+.+.+-. +++|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence 579999999976532 3999998744321 12345555555 899999999865
No 351
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.50 E-value=0.027 Score=51.05 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=34.6
Q ss_pred CCeEEEEEecCC-CCCC-ceEEecCCCcccccC-CccceeccCCcEE---EEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATG-HPKP-SIIWKTSENKPITLG-SWKDSAVASSTLN---FTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G-~P~p-~v~W~k~~~~~~~~~-~~~~~~~~~~sL~---I~~Vt~~DsG~YtC~A~N 367 (902)
++.++|.|.+.| .|.. .|+|+|++....... ........+++.. ...+..+|...|+|++.+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEe
Confidence 788999999999 4543 899999874322111 1111112222222 223334466677776655
No 352
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.40 E-value=0.034 Score=46.75 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=34.8
Q ss_pred ecCceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 382 PIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 382 ~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
..|.+|+|+|...+. .+.|.+++..+.. +.. .+.+.+-. +++|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g-~~~----------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG-SDE----------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCC-CCc----------------eEEeeccC-CCCceEEEEeCCC
Confidence 468999999965532 3999888744422 111 14444555 8899999999654
No 353
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.36 E-value=1.3 Score=47.87 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=126.0
Q ss_pred eEEEecCCCCC-ceEeecChhhhcccCCcceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCC
Q psy12803 596 KFWMTTDSDPT-HLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVD 674 (902)
Q Consensus 596 ~~~~~~~~~~~-~~~ey~~~~~~~~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~ 674 (902)
.+|...+-.+. .|..| ++..++....+.||-..-|-|-++.|+.||---..+.....||.++-+...+..++.
T Consensus 57 ~LyESTG~yG~S~l~~~----d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~-- 130 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKV----DLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG-- 130 (264)
T ss_dssp EEEEEECSTTEEEEEEE----ETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS--
T ss_pred EEEEeCCCCCcEEEEEE----ECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCC--
Confidence 45554443333 34433 345566667899999999999999999999999999999999999876666555442
Q ss_pred CCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEEEeccccccccc---eEEEecEEEEEeecCCC
Q psy12803 675 PNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGD---MFVVCGVLYVVDSVTDR 751 (902)
Q Consensus 675 ~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~~~k~~~~n---aFmvCGvLY~~~s~~~~ 751 (902)
-++ =|+.|..-||+- +|.=.|..+||++|++.++...+...+.+.+ -=.|=|.+||=--
T Consensus 131 -------EGW---GLt~dg~~Li~S----DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW---- 192 (264)
T PF05096_consen 131 -------EGW---GLTSDGKRLIMS----DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVW---- 192 (264)
T ss_dssp -------S-----EEEECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEET----
T ss_pred -------cce---EEEcCCCEEEEE----CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC----
Confidence 112 255888888875 6666788899999999999999876655544 4446788888543
Q ss_pred cceEEEEEeCCCCcee-eeeee--ec-----CC----CCCceeeecCCCCCeEEEEeCCeEEEEEeEEee
Q psy12803 752 NTNIRFALDLYKNDLL-EVSLN--FT-----NP----FTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE 809 (902)
Q Consensus 752 ~~~I~y~~Dt~~~~~~-~~~i~--f~-----~~----~~~~~~l~YnP~d~~LY~wd~g~~~~Y~v~f~~ 809 (902)
.+..-...|..|++-. .+++. .+ .. -..+.-|.|+|..+.||+=-.----.|.|++.+
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e 262 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE 262 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence 3346677899998744 34411 11 11 256888999999999999888777888888865
No 354
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.34 E-value=0.067 Score=48.99 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=45.4
Q ss_pred eeeecCceEEEEEEeecc-CC-ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeC
Q psy12803 379 VGVPIGRTATLECEVEAF-PL-SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNE 454 (902)
Q Consensus 379 ~~v~~G~~v~L~C~a~g~-P~-P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~ 454 (902)
..+..++.++|.|.|.++ |. ..|+|.+++..+.. ...........+ +|...+.|.|..-. ..-.|+|.+...
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~-~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL-GSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC-CeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 334456789999999986 53 37899888766432 111111222333 78888888876442 233599999774
No 355
>KOG1924|consensus
Probab=95.31 E-value=0.084 Score=62.92 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=4.9
Q ss_pred eeeeEeecc
Q psy12803 34 NRFRRHVDK 42 (902)
Q Consensus 34 ~~~~~~~~~ 42 (902)
||||.+.|+
T Consensus 448 yr~~l~id~ 456 (1102)
T KOG1924|consen 448 YRFRLDIDL 456 (1102)
T ss_pred hhhcccCcH
Confidence 555555544
No 356
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.30 E-value=0.021 Score=49.58 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=33.6
Q ss_pred eEEEEEecCC-CCC-CceEEecCCCcccccCC-ccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803 308 NVRLRCVATG-HPK-PSIIWKTSENKPITLGS-WKDSAVASS------TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 308 ~v~L~C~a~G-~P~-p~v~W~k~~~~~~~~~~-~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.++|.|.+.| .|. ..|+|+|++..+..... .......++ .|.|.....++...|+|++.+
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H 69 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTH 69 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEE
Confidence 3689999999 455 68999997764322111 011111232 233333344556678887754
No 357
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.24 E-value=0.037 Score=50.43 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.3
Q ss_pred EcCCeEEEEEecCC-CCCC-ceEEecCCCcc
Q psy12803 304 REGDNVRLRCVATG-HPKP-SIIWKTSENKP 332 (902)
Q Consensus 304 ~eGe~v~L~C~a~G-~P~p-~v~W~k~~~~~ 332 (902)
.+|+.++|.|.+.| .|.. .++|+|++..+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~ 42 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEE 42 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeec
Confidence 46899999999999 5544 78999987654
No 358
>PHA02633 hypothetical protein; Provisional
Probab=95.10 E-value=0.047 Score=45.20 Aligned_cols=37 Identities=30% Similarity=0.209 Sum_probs=33.6
Q ss_pred EEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803 434 LNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK 470 (902)
Q Consensus 434 L~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p 470 (902)
|.|.++..+|+|.|.|+.+|.--....++.|.|....
T Consensus 20 Lwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 20 MLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred EEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 9999999999999999999998888999999987543
No 359
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.89 E-value=0.031 Score=51.21 Aligned_cols=65 Identities=17% Similarity=0.386 Sum_probs=38.1
Q ss_pred EEcCCeEEEEEecCCC--C-CCceEEecCCCcccccCCccceeccCCcEEEEe---eeeec---CceeEEeecC
Q psy12803 303 VREGDNVRLRCVATGH--P-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTR---INRIN---MGAYMCLADN 367 (902)
Q Consensus 303 v~eGe~v~L~C~a~G~--P-~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~---Vt~~D---sG~YtC~A~N 367 (902)
+..|+.++|.|.+.|. | ...|+|+|+++..............++++.+.. +..+| .-.|+|.+..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 5568999999999997 4 446899998754322211112223344444432 22332 3368888876
No 360
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.87 E-value=0.024 Score=52.22 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=24.3
Q ss_pred EEcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803 303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKP 332 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~ 332 (902)
..+++.++|.|.|.+ +| ...|+|+|++..+
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~ 45 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATV 45 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEEC
Confidence 446788999999999 56 6689999987664
No 361
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.74 E-value=0.22 Score=45.66 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=51.9
Q ss_pred eeeeecCceEEE-EEEe-eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 378 RVGVPIGRTATL-ECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 378 ~~~v~~G~~v~L-~C~a-~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
...+.+|+.+.+ .|.+ .+.|.+.|.|+.+..... ........+++...+++|.+......|.-.++|++....
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 456778888888 8876 577999999986532221 122233445567778889987666667779999998874
Q ss_pred c
Q psy12803 456 D 456 (902)
Q Consensus 456 G 456 (902)
-
T Consensus 85 l 85 (97)
T cd07704 85 L 85 (97)
T ss_pred c
Confidence 4
No 362
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.63 E-value=0.058 Score=49.09 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=22.5
Q ss_pred EcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803 304 REGDNVRLRCVATG-HP-KPSIIWKTSENKP 332 (902)
Q Consensus 304 ~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~ 332 (902)
..|+..+|.|.|.| +| ...|+|+|++..+
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~ 43 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKI 43 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEEC
Confidence 45777899999999 44 5578999987654
No 363
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=94.17 E-value=0.047 Score=49.75 Aligned_cols=28 Identities=18% Similarity=0.546 Sum_probs=22.1
Q ss_pred cCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803 305 EGDNVRLRCVATG-HPK-PSIIWKTSENKP 332 (902)
Q Consensus 305 eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~ 332 (902)
..+.++|.|.|.| .|. .+|+|+|++..+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 4567999999999 564 679999977653
No 364
>KOG3545|consensus
Probab=94.16 E-value=0.28 Score=52.07 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=93.7
Q ss_pred EEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEEEec--cccccccceEEE-ecEEEEEeecCCCcceEEEEEeCCC
Q psy12803 687 MDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNIT--LLHKKVGDMFVV-CGVLYVVDSVTDRNTNIRFALDLYK 763 (902)
Q Consensus 687 iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~--~~k~~~~naFmv-CGvLY~~~s~~~~~~~I~y~~Dt~~ 763 (902)
-|.......-|++ .--.+++++.-.+ .+.-+...|-+. ++....+..++| ||-||--+ .++++--.||+.+
T Consensus 24 rDpl~~~~r~~~~-~~~~~~~l~E~~~-~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk----~~t~~ivky~l~~ 97 (249)
T KOG3545|consen 24 RDPLPADDRIYVM-NYFDGLMLTEYTN-LEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNK----AGTRNIIKYDLET 97 (249)
T ss_pred cCCCcccCceEEe-ccccCceEEEecc-HHHhhccCcceEEeCCCCccccceEEEcceEEeec----cCCcceEEEEeec
Confidence 3555557788888 2224555554444 232233333333 577888888877 88888876 3455555556555
Q ss_pred Ccee-eee---ee----ecCCCCCceeeecCCCCCeEEEE-----eCCeEEEEEe-----EEeeecccCCCCCCcCCC--
Q psy12803 764 NDLL-EVS---LN----FTNPFTNTTMITYNSRYKDLYTW-----DRGNSLTYPI-----RYHEIDSYNLNKQEKTDA-- 823 (902)
Q Consensus 764 ~~~~-~~~---i~----f~~~~~~~~~l~YnP~d~~LY~w-----d~g~~~~Y~v-----~f~~~~~~~~~~~~~~~~-- 823 (902)
.... ... .- |+=....++-||..=.|+-|++- ++|.+|.=+| ++........+++.....
T Consensus 98 ~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~ 177 (249)
T KOG3545|consen 98 RTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFM 177 (249)
T ss_pred ceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEE
Confidence 3321 122 22 22334556668888888877653 5577773332 333333222222222222
Q ss_pred ----------------CccccccCCCCCC--CCc-CCcccceEE-Eee----eeeeeecCCCceeeeeeEee
Q psy12803 824 ----------------DMTTGVDITPTQP--PLI-PDSTYSFIR-LTF----QDLYTWDRGNSLTYPIRYHE 871 (902)
Q Consensus 824 ----------------~~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~ 871 (902)
.+.-..+.++... +.| -+.-|+.|. |.| +.||.||.|+||+|+|++++
T Consensus 178 iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wdng~~l~y~l~~~~ 249 (249)
T KOG3545|consen 178 ICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWDNGHQLTYNLTFFE 249 (249)
T ss_pred EeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEecCCcEEEEEeEecC
Confidence 1111222221111 111 122233332 333 57999999999999999975
No 365
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.07 E-value=0.26 Score=46.48 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=46.5
Q ss_pred cCceeeeecCceEEEEEEeeccCC---ceEEEEecCCeeee-------------cCCceEEEeecCCCceeeEeEEEEec
Q psy12803 375 RNRRVGVPIGRTATLECEVEAFPL---SVRYWEFIDGTLIE-------------HDGVKYSISDVDKGSYQYIMQLNISN 438 (902)
Q Consensus 375 ~p~~~~v~~G~~v~L~C~a~g~P~---P~v~W~k~~~~l~~-------------~~~~~~~~~~~~~~s~~~~stL~I~~ 438 (902)
.+....+..|..++|.|++++.-. -.+.|.+.....++ ....++......+. -+.+|.|.+
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~---ntv~L~l~~ 80 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGN---EQVNFTLQN 80 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCC---CEEEEEEcC
Confidence 344556788899999999977643 35778765322110 01112222222221 245699999
Q ss_pred cCCCCCeEEEEEE
Q psy12803 439 VNISDFDTYRCIS 451 (902)
Q Consensus 439 V~~~DsG~YtC~A 451 (902)
++.+|.+.|.|..
T Consensus 81 L~a~DTa~Y~Ca~ 93 (115)
T cd05721 81 LRANQTDIYFCKI 93 (115)
T ss_pred CCHHHCeEEEEEe
Confidence 9999999999965
No 366
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=93.82 E-value=0.12 Score=47.20 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=21.8
Q ss_pred cCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803 305 EGDNVRLRCVATG-HP-KPSIIWKTSENKP 332 (902)
Q Consensus 305 eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~ 332 (902)
.++.++|.|.|.| +| ...|+|+|++..+
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~ 43 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPV 43 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEc
Confidence 4667899999999 55 4678999987653
No 367
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.74 E-value=0.083 Score=48.38 Aligned_cols=30 Identities=10% Similarity=0.358 Sum_probs=22.8
Q ss_pred EEcCCeEEEEEecCC-CC-CCceEEecCCCcc
Q psy12803 303 VREGDNVRLRCVATG-HP-KPSIIWKTSENKP 332 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-~P-~p~v~W~k~~~~~ 332 (902)
+..+..++|.|.|.+ .| ..+|+|.|++..+
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~ 44 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPS 44 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEEC
Confidence 444678999999999 45 4568999977653
No 368
>KOG4597|consensus
Probab=93.67 E-value=0.076 Score=60.21 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=66.5
Q ss_pred EEEEcCceeeeecCceEEEEEEeeccCCceEEEEec---CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEE
Q psy12803 371 QILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFI---DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTY 447 (902)
Q Consensus 371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~---~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Y 447 (902)
.+...+....+..+++++++|-+.|.|.+.|+|.+. ...++..... . .++-....+..|.|-+....|+|.|
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq--~---~e~p~vtstcql~ic~ewq~~a~w~ 272 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ--T---VENPVVTSTCQLVICNEWQADAGWY 272 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc--c---cCCcceeeeeeEEEcchhhcCCCce
Confidence 333345556788999999999999999999999642 1111111111 1 1111122355699999999999999
Q ss_pred EEEEEeCCceeEEEEEEEeec
Q psy12803 448 RCISKNEVDIAKGSLILFESN 468 (902)
Q Consensus 448 tC~A~N~~G~~~~s~~L~V~~ 468 (902)
+|.|+|.+|...+.+.+.+..
T Consensus 273 tCs~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 273 TCSARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred eeccccccceeeccceeeeec
Confidence 999999999999999887754
No 369
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.33 E-value=1 Score=48.64 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=68.7
Q ss_pred EecCCccEEEEEcCCCcEEEEeeCCCCc--ceeEEEEeccccccccceEEE-ecEEEEEeecCCCcceEEEEEeCCCCce
Q psy12803 690 SLDENGLWVIYGLSNNNTAVTKLDTATL--QIQYTWNITLLHKKVGDMFVV-CGVLYVVDSVTDRNTNIRFALDLYKNDL 766 (902)
Q Consensus 690 avDE~GLWviY~~~~~~ivvskld~~~l--~v~~tw~t~~~k~~~~naFmv-CGvLY~~~s~~~~~~~I~y~~Dt~~~~~ 766 (902)
..|.+-+|++=.. .++.+..=-+-++| .-.......++....|+.++| =|.||.-+. ++.--..||+.+++.
T Consensus 27 ~~~~~~iy~~~~~-~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~----~s~~IvkydL~t~~v 101 (250)
T PF02191_consen 27 PSDSEKIYVTSGF-SGNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY----NSRNIVKYDLTTRSV 101 (250)
T ss_pred CCCCCCEEEECcc-CCCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec----CCceEEEEECcCCcE
Confidence 3677788887333 44455444455555 223333445678889999998 788998875 444556677777765
Q ss_pred e-eeee---e----ecCCCCCceeeecCCCCCeEEEE-----eCCeEEEEEeE
Q psy12803 767 L-EVSL---N----FTNPFTNTTMITYNSRYKDLYTW-----DRGNSLTYPIR 806 (902)
Q Consensus 767 ~-~~~i---~----f~~~~~~~~~l~YnP~d~~LY~w-----d~g~~~~Y~v~ 806 (902)
. ...| . |+=.....+-||..=.|+-|.+= ++|++|.=+|.
T Consensus 102 ~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld 154 (250)
T PF02191_consen 102 VARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLD 154 (250)
T ss_pred EEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeC
Confidence 5 3332 2 22233556678888888876654 34677776665
No 370
>PHA03270 envelope glycoprotein C; Provisional
Probab=93.17 E-value=9.4 Score=43.62 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=67.2
Q ss_pred cEEEEeeeeecCceeEEeecC----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEecC
Q psy12803 347 TLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFID 407 (902)
Q Consensus 347 sL~I~~Vt~~DsG~YtC~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~~ 407 (902)
.|+|..++...+|.|+-...+ .+|.+.+.+. .+.+|+...-.|.+..+ |. ..+.|+.++
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 599999999999999988544 3344433332 36789999999998655 53 368899988
Q ss_pred CeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCC-eEEEEEEE
Q psy12803 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDF-DTYRCISK 452 (902)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~Ds-G~YtC~A~ 452 (902)
..+......+.......++ ....|+|++........ =+.+|.+.
T Consensus 261 ~~V~~~~~i~~~~~~~~dG-fs~vStvtsea~~~~~~PPsLrC~v~ 305 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDG-FSATSTLTSEARAGLAPPRNLTCEFT 305 (466)
T ss_pred ccccCcceeeeeeEecCCC-eeEEEEEeccccccCCCCCCceEEEE
Confidence 8774333333333333333 34667777766543322 27899874
No 371
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=93.08 E-value=0.31 Score=45.95 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=49.0
Q ss_pred cCCcEEEEcCCeEEEEEecCCCC--C-CceEEecCCCcccc---c----------CCccceec-----cCCcEEEEeeee
Q psy12803 297 SSSPIVVREGDNVRLRCVATGHP--K-PSIIWKTSENKPIT---L----------GSWKDSAV-----ASSTLNFTRINR 355 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G~P--~-p~v~W~k~~~~~~~---~----------~~~~~~~~-----~~~sL~I~~Vt~ 355 (902)
++....+..|.+|+|.|.+++.- . -.+.|+|.....+. . ...+.... ..-+|.|.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 45557788999999999998743 3 46889885332210 0 01111111 112799999999
Q ss_pred ecCceeEEeecC-CCCEE
Q psy12803 356 INMGAYMCLADN-VPPQI 372 (902)
Q Consensus 356 ~DsG~YtC~A~N-~~P~i 372 (902)
+|++.|.|..+. +||-+
T Consensus 84 ~DTa~Y~Ca~e~myPPPy 101 (115)
T cd05721 84 NQTDIYFCKIELMYPPPY 101 (115)
T ss_pred HHCeEEEEEeeeccCCCE
Confidence 999999998776 44433
No 372
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.81 E-value=0.28 Score=41.75 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=39.5
Q ss_pred CceEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEE
Q psy12803 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLI 463 (902)
Q Consensus 384 G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~ 463 (902)
.+.|.|+|.+ .-+|.|++ +..+.... ..+|.|-++...-.|.|.|.+.+ -..+..++
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~----------------~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQ 62 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS----------------NTLLDLGSRINDPRGTYSCKESE--PNKEKTLQ 62 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc----------------ccEEeccCcccCCCcceEecCcc--CCCcEEEE
Confidence 3579999966 25599988 55543211 11388888889999999999877 22334444
Q ss_pred EE
Q psy12803 464 LF 465 (902)
Q Consensus 464 L~ 465 (902)
|+
T Consensus 63 Vy 64 (69)
T cd07691 63 VY 64 (69)
T ss_pred EE
Confidence 44
No 373
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=92.74 E-value=0.26 Score=45.12 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=40.0
Q ss_pred EEcCCeEEEEEecCC-CCC--CceEEecCCCcccccCCcc-----ceeccCCcEEEEeeeeecCc-eeEEeecC
Q psy12803 303 VREGDNVRLRCVATG-HPK--PSIIWKTSENKPITLGSWK-----DSAVASSTLNFTRINRINMG-AYMCLADN 367 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-~P~--p~v~W~k~~~~~~~~~~~~-----~~~~~~~sL~I~~Vt~~DsG-~YtC~A~N 367 (902)
+.+|..+++.|.+.+ .|. .+|.|+|.+..+....... ........++|.. +++|.| +|+|+|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 478999999999986 554 6799998554332211100 0011223556555 477777 89999864
No 374
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=92.65 E-value=0.14 Score=45.22 Aligned_cols=28 Identities=29% Similarity=0.665 Sum_probs=22.3
Q ss_pred cCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803 305 EGDNVRLRCVATG-HPK-PSIIWKTSENKP 332 (902)
Q Consensus 305 eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~ 332 (902)
.++.++|.|.+.+ .|. ..|.|++++..+
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~ 36 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV 36 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence 4889999999998 553 379999977654
No 375
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.64 E-value=0.21 Score=48.05 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=47.5
Q ss_pred ecCceEEEEEEeecc-----CCceEEEEecCCeeeecCCceEEE-eecC-----CCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 382 PIGRTATLECEVEAF-----PLSVRYWEFIDGTLIEHDGVKYSI-SDVD-----KGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 382 ~~G~~v~L~C~a~g~-----P~P~v~W~k~~~~l~~~~~~~~~~-~~~~-----~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
.-.++|.|.|.+... +.-.|.|.+++..+...++..... .... .....-.++|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 346889999988642 344689988777654432221111 0000 000011234888776555 8999999
Q ss_pred EEeCCceeEEEEEEEee
Q psy12803 451 SKNEVDIAKGSLILFES 467 (902)
Q Consensus 451 A~N~~G~~~~s~~L~V~ 467 (902)
|.....+.+..+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99998888888888764
No 376
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=92.32 E-value=0.35 Score=44.33 Aligned_cols=66 Identities=15% Similarity=0.375 Sum_probs=41.4
Q ss_pred CcEEEEcCCeEEE-EEecC-CCCCCceEEecCCCcccccCCccceeccCC------cEEEEeeeeecCceeEEeecC
Q psy12803 299 SPIVVREGDNVRL-RCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVASS------TLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 299 ~~v~v~eGe~v~L-~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~------sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+.+|+.+.+ .|.+. |+|.++|+|+.+...... .......++ .|.+.....+|.-.++|++.+
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeC
Confidence 3466889999999 99865 699999999986333211 111112222 444444444566688998876
No 377
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.30 E-value=0.11 Score=48.12 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=23.0
Q ss_pred EEcCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803 303 VREGDNVRLRCVATG-HPK-PSIIWKTSENKP 332 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~ 332 (902)
+..++.++|.|.|.| .|. ..|+|+|++..+
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~ 44 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPL 44 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEEC
Confidence 445788999999999 453 368999987654
No 378
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.06 E-value=0.26 Score=41.86 Aligned_cols=49 Identities=20% Similarity=0.441 Sum_probs=37.4
Q ss_pred CCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 306 Ge~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.+.|.|.|.+. .+|.|++ +..+... .+.+|.+-.+..+=.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence 45899999762 4699999 5543321 156788999999999999999876
No 379
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=91.36 E-value=0.32 Score=44.41 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=35.4
Q ss_pred CeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803 307 DNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 307 e~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.+.|.+. ++|.+.|+|+++....... ......+ +.|.+.....+|.-.|+|++.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~---~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h 80 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANT---TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEH 80 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE---EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence 4678999876 6999999999973221110 1111112 2455544444555689999988
No 380
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=91.04 E-value=0.16 Score=48.11 Aligned_cols=30 Identities=33% Similarity=0.665 Sum_probs=23.5
Q ss_pred EEcCCeEEEEEecCC-CCC-CceEEecCCCcc
Q psy12803 303 VREGDNVRLRCVATG-HPK-PSIIWKTSENKP 332 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-~P~-p~v~W~k~~~~~ 332 (902)
+.+++.++|.|.|.+ .|. ..|+|+|++..+
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l 46 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEV 46 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEEC
Confidence 446778999999999 565 589999977554
No 381
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.65 E-value=6.1 Score=42.06 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=82.4
Q ss_pred cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEec-CCccEEEEEcCCCcEEEEeeCCCCcce
Q psy12803 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLD-ENGLWVIYGLSNNNTAVTKLDTATLQI 719 (902)
Q Consensus 641 ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avD-E~GLWviY~~~~~~ivvskld~~~l~v 719 (902)
+|.||+.-.....|.|+|+.+..... ..++. -.=++++ +.|.+++ +. .+.+.+. |+.+=++
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-------------~~G~~~~~~~g~l~v-~~-~~~~~~~--d~~~g~~ 72 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-------------PNGMAFDRPDGRLYV-AD-SGGIAVV--DPDTGKV 72 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EESSS-------------EEEEEEECTTSEEEE-EE-TTCEEEE--ETTTTEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-------------CceEEEEccCCEEEE-EE-cCceEEE--ecCCCcE
Confidence 48999998888899999999987743 22321 2333444 4444433 22 2333333 5555444
Q ss_pred eEEEEec--cccccccc--eEEEecEEEEEeecCCCcceE----EEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCe
Q psy12803 720 QYTWNIT--LLHKKVGD--MFVVCGVLYVVDSVTDRNTNI----RFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKD 791 (902)
Q Consensus 720 ~~tw~t~--~~k~~~~n--aFmvCGvLY~~~s~~~~~~~I----~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~ 791 (902)
+...+.. -.+...-| +|--=|-||++++........ -|.+|.. ++-.. .+.+ ...-.-|.++|..+.
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~---~~~~-~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV---VADG-LGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE---EEEE-ESSEEEEEEETTSSE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE---EecC-cccccceEECCcchh
Confidence 4333331 11222223 444458899999865443333 5777777 43222 2222 233348999999999
Q ss_pred EEEEeCCeEEEEEeEEe
Q psy12803 792 LYTWDRGNSLTYPIRYH 808 (902)
Q Consensus 792 LY~wd~g~~~~Y~v~f~ 808 (902)
||+=|-.....|.+.+.
T Consensus 148 lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred eeecccccceeEEEecc
Confidence 99988666556655554
No 382
>smart00284 OLF Olfactomedin-like domains.
Probab=90.63 E-value=1.9 Score=46.57 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=50.5
Q ss_pred cccccccceEEEe-cEEEEEeecCCCcceEEEEEeCCCCcee-e--ee-eeecCCCC----CceeeecCCCCCeEEEE--
Q psy12803 727 LLHKKVGDMFVVC-GVLYVVDSVTDRNTNIRFALDLYKNDLL-E--VS-LNFTNPFT----NTTMITYNSRYKDLYTW-- 795 (902)
Q Consensus 727 ~~k~~~~naFmvC-GvLY~~~s~~~~~~~I~y~~Dt~~~~~~-~--~~-i~f~~~~~----~~~~l~YnP~d~~LY~w-- 795 (902)
++....|..+||- |.||.-+. ++..-.-||+.+++.. . +. -.|.+++. ..+.||..-.|+-|.+-
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa 145 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA 145 (255)
T ss_pred CCCccccccEEEECceEEEEec----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe
Confidence 4667888888886 78888654 3344566777776643 2 22 23344443 45779999999977766
Q ss_pred ---eCCeEEEEEeE
Q psy12803 796 ---DRGNSLTYPIR 806 (902)
Q Consensus 796 ---d~g~~~~Y~v~ 806 (902)
++|++|.=+|.
T Consensus 146 t~~~~g~ivvSkLn 159 (255)
T smart00284 146 TEQNAGKIVISKLN 159 (255)
T ss_pred ccCCCCCEEEEeeC
Confidence 66999976665
No 383
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=90.39 E-value=0.47 Score=43.32 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=35.2
Q ss_pred CeEEEEEecC-CCCCCceEEecCCCcccccCCccceeccC------CcEEEEeeeeecCceeEEeecC
Q psy12803 307 DNVRLRCVAT-GHPKPSIIWKTSENKPITLGSWKDSAVAS------STLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 307 e~v~L~C~a~-G~P~p~v~W~k~~~~~~~~~~~~~~~~~~------~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
....+.|.+. |+|.+.|+|+++...... .......+ +.|.+.....+|.-.|+|++.|
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~---~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAE---TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcce---eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence 4678899985 699999999996211110 01111122 2455544444555589999988
No 384
>PHA02982 hypothetical protein; Provisional
Probab=90.02 E-value=1.2 Score=45.81 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=66.6
Q ss_pred cEEEEcCCeEEEEEecCC-CCCCceEEecCCCcccccCC---------------cc----c-eeccCCcEEEEeeeeecC
Q psy12803 300 PIVVREGDNVRLRCVATG-HPKPSIIWKTSENKPITLGS---------------WK----D-SAVASSTLNFTRINRINM 358 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G-~P~p~v~W~k~~~~~~~~~~---------------~~----~-~~~~~~sL~I~~Vt~~Ds 358 (902)
++....+++|.|.|.... .--.+..|+++++..+.... .+ . .....++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 466778999999999543 33456889987765544111 00 1 112346899999999999
Q ss_pred ceeEEeecC---C----CCEEEEcCce--eeeecC-ceEEEEEEeeccCCceEEEEecC
Q psy12803 359 GAYMCLADN---V----PPQILIRNRR--VGVPIG-RTATLECEVEAFPLSVRYWEFID 407 (902)
Q Consensus 359 G~YtC~A~N---~----~P~i~~~p~~--~~v~~G-~~v~L~C~a~g~P~P~v~W~k~~ 407 (902)
|-|+|+|.. . .--+.+.... ..+.++ ....+.|-+-..-.+...|..++
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~G 171 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDILYVVEEHNNETIITCFVGSKHGDVPRFIVAG 171 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEEEEEEecCCeEEEEEEEEeccCCCccEEEee
Confidence 999999987 1 1112221111 123344 34668898865544444896654
No 385
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=89.16 E-value=0.43 Score=50.90 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=38.9
Q ss_pred CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 319 PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 319 P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..|.+.|...++.++... ....+...+.|++.+...+++|.|+|..+-
T Consensus 11 iDP~y~W~GP~g~~l~gn-~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGN-SYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcccCCC-CeEEEccCceEEeeccccccCCceEEEEEE
Confidence 468899999888776533 355667788999999999999999998643
No 386
>PHA03269 envelope glycoprotein C; Provisional
Probab=88.92 E-value=2.1 Score=49.18 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=67.9
Q ss_pred cEEEEeeeeecCceeEEeecC-----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEec
Q psy12803 347 TLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFI 406 (902)
Q Consensus 347 sL~I~~Vt~~DsG~YtC~A~N-----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~ 406 (902)
.|.|.+++..++|.|+-+..+ .+|.+.+.+ ..+.+|+...-.|.+..+ |. ..+.|+.+
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 599999999999999987543 333333333 246789999999998655 53 36889998
Q ss_pred CCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCC--CeEEEEEEE
Q psy12803 407 DGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD--FDTYRCISK 452 (902)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~D--sG~YtC~A~ 452 (902)
++.+.. ...........++.....|+|++......| -=+.+|.+.
T Consensus 368 g~~V~~-~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~ 414 (566)
T PHA03269 368 FGNIGK-NFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL 414 (566)
T ss_pred CcccCc-cccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence 777653 222222333455555667778875443333 246799874
No 387
>KOG1480|consensus
Probab=88.77 E-value=0.18 Score=60.38 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=54.6
Q ss_pred CCcEEEEcCCeEEEEEec-CCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 298 SSPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
+.-..|.++..+.|.|.. .+.|...+.|+|++....+ ........+..|+|..+...|+|+|+|+|.|
T Consensus 136 p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~~~arlsd~~nytc~a~n 204 (909)
T KOG1480|consen 136 PVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLIISQARLSDSGNYTCEATN 204 (909)
T ss_pred hhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccccchhhhhcccceeeeeh
Confidence 334567888899999985 5789999999997655544 3445556678899999999999999999999
No 388
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=88.75 E-value=0.3 Score=47.06 Aligned_cols=64 Identities=14% Similarity=0.324 Sum_probs=36.7
Q ss_pred EEcCCeEEEEEecCC-----CCCCceEEecCCCcccccCCc--------------cceeccCCcEEEEeeeeecCceeEE
Q psy12803 303 VREGDNVRLRCVATG-----HPKPSIIWKTSENKPITLGSW--------------KDSAVASSTLNFTRINRINMGAYMC 363 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-----~P~p~v~W~k~~~~~~~~~~~--------------~~~~~~~~sL~I~~Vt~~DsG~YtC 363 (902)
..-.++|.|.|.+.. -+...|.|.+++..+...... .....++.+|.+...+.- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 346899999999975 124458998876654322111 111234557999886665 899999
Q ss_pred eecC
Q psy12803 364 LADN 367 (902)
Q Consensus 364 ~A~N 367 (902)
++..
T Consensus 103 eVt~ 106 (130)
T PF08204_consen 103 EVTE 106 (130)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8744
No 389
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.65 E-value=17 Score=36.35 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=52.3
Q ss_pred EEEcCeEEEeecCCc-----cEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEec-CCccEEEEEcC-CCcEEEE
Q psy12803 638 VVFNNSFYYHKKFSN-----SIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLD-ENGLWVIYGLS-NNNTAVT 710 (902)
Q Consensus 638 vvyng~lYy~~~~s~-----~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avD-E~GLWviY~~~-~~~ivvs 710 (902)
|-.||++|--.+... -|+.|||.+++......+|.... .....++|++= +.-|-+++... ..++-|-
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~------~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND------DDDDSVSLSVVRGDCLCVLYQCDETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC------ccCCEEEEEEecCCEEEEEEeccCCccEEEE
Confidence 567999998754443 49999999999966777774222 34567899754 45799998643 3346555
Q ss_pred eeCCCCcceeEEEE
Q psy12803 711 KLDTATLQIQYTWN 724 (902)
Q Consensus 711 kld~~~l~v~~tw~ 724 (902)
-++...=. ..+|.
T Consensus 76 vm~~~~~~-~~SWt 88 (164)
T PF07734_consen 76 VMKKYGYG-KESWT 88 (164)
T ss_pred EEeeeccC-cceEE
Confidence 55531101 66773
No 390
>PHA03273 envelope glycoprotein C; Provisional
Probab=88.30 E-value=2.9 Score=48.05 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=67.4
Q ss_pred cEEEEeeeeecCceeEEeecC----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEecC
Q psy12803 347 TLNFTRINRINMGAYMCLADN----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFID 407 (902)
Q Consensus 347 sL~I~~Vt~~DsG~YtC~A~N----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~~ 407 (902)
.|+|..++..++|.|+-...+ .+|.+.+.+. .+.+|+...-.|.+..+ |. ..+.|+.++
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 499999999999999977433 3444443333 46789999999998655 53 368899988
Q ss_pred CeeeecCCceEEEeecCCCceeeEeEEEEeccCC-CCCeEEEEEEE
Q psy12803 408 GTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNI-SDFDTYRCISK 452 (902)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~-~DsG~YtC~A~ 452 (902)
..+.......-.......+.....|+|++..... +--=+.+|.+.
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 8765222222222223333345577788777543 33337999874
No 391
>PHA02633 hypothetical protein; Provisional
Probab=88.29 E-value=0.4 Score=39.83 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.7
Q ss_pred cCCcEEEEeeeeecCceeEEeecC
Q psy12803 344 ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 344 ~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
....|.|-++..+|+|.|.|..+|
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn 39 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKN 39 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcC
Confidence 455899999999999999999988
No 392
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=88.22 E-value=6.6 Score=44.28 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=50.2
Q ss_pred eeeeecCceEEEEEEeec--c-CCceEEEEecCCee---ee------------cCCceEEEeecCCCc-eeeEeEEEEec
Q psy12803 378 RVGVPIGRTATLECEVEA--F-PLSVRYWEFIDGTL---IE------------HDGVKYSISDVDKGS-YQYIMQLNISN 438 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g--~-P~P~v~W~k~~~~l---~~------------~~~~~~~~~~~~~~s-~~~~stL~I~~ 438 (902)
.+.+.+|..|.|.|...- + .-..+.|+.-+-++ .. .....+.+....+.+ --..|+|+|.+
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 355667999999998763 3 23467897443221 10 112223333221111 11357899999
Q ss_pred cCCCCCeEEEEEEEeCCceeEE
Q psy12803 439 VNISDFDTYRCISKNEVDIAKG 460 (902)
Q Consensus 439 V~~~DsG~YtC~A~N~~G~~~~ 460 (902)
+.-+.+|=|+|.|....-..+.
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec 374 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEEC 374 (500)
T ss_pred EEEEcCCceEEEEecCcchhhh
Confidence 9999999999999876544433
No 393
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=88.20 E-value=0.78 Score=41.89 Aligned_cols=27 Identities=37% Similarity=0.783 Sum_probs=21.2
Q ss_pred cCCeEEEEEecCC-CC-CCceEEecCCCc
Q psy12803 305 EGDNVRLRCVATG-HP-KPSIIWKTSENK 331 (902)
Q Consensus 305 eGe~v~L~C~a~G-~P-~p~v~W~k~~~~ 331 (902)
..+.++|.|.|.+ .| ..+|+|+|++..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 3567999999999 44 457899998765
No 394
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=88.19 E-value=0.93 Score=41.76 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=23.0
Q ss_pred EEcCCeEEEEEecCC-C-C-CCceEEecCCCc
Q psy12803 303 VREGDNVRLRCVATG-H-P-KPSIIWKTSENK 331 (902)
Q Consensus 303 v~eGe~v~L~C~a~G-~-P-~p~v~W~k~~~~ 331 (902)
+..+..++|.|.+.+ . | ...|+|.+++..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 446789999999999 4 5 457999998765
No 395
>PLN02153 epithiospecifier protein
Probab=87.23 E-value=18 Score=40.64 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=79.9
Q ss_pred cCCCCCcceEEEcCeEEEeecC-----------CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccE
Q psy12803 629 KEPFQGNAHVVFNNSFYYHKKF-----------SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLW 697 (902)
Q Consensus 629 ~~~~~Gtg~vvyng~lYy~~~~-----------s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLW 697 (902)
|.+-.+...+++++.||---.. .+.+..||+++.+ |..++.. ........+++ +++-++-|+
T Consensus 125 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~---W~~l~~~-~~~~~~r~~~~---~~~~~~~iy 197 (341)
T PLN02153 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK---WVQLPDP-GENFEKRGGAG---FAVVQGKIW 197 (341)
T ss_pred CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe---EeeCCCC-CCCCCCCCcce---EEEECCeEE
Confidence 4445566778999999854211 1368889999874 4445421 10001111222 455566788
Q ss_pred EEEEcC-----CC-----cEEEEeeCCCCcceeEEEEec-----cccccccc-eEEEecEEEEEeecCC----------C
Q psy12803 698 VIYGLS-----NN-----NTAVTKLDTATLQIQYTWNIT-----LLHKKVGD-MFVVCGVLYVVDSVTD----------R 751 (902)
Q Consensus 698 viY~~~-----~~-----~ivvskld~~~l~v~~tw~t~-----~~k~~~~n-aFmvCGvLY~~~s~~~----------~ 751 (902)
||++.. .+ .-.|-.+|+.+ .+|..- .+...... +-++-+-||++--... .
T Consensus 198 v~GG~~~~~~~gG~~~~~~~~v~~yd~~~----~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 273 (341)
T PLN02153 198 VVYGFATSILPGGKSDYESNAVQFFDPAS----GKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGT 273 (341)
T ss_pred EEeccccccccCCccceecCceEEEEcCC----CcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccc
Confidence 887642 11 11345566654 346532 22222232 3344568888855321 1
Q ss_pred cceEEEEEeCCCCceeeee----eeecCCC--CCceeeecCCCCCeEEEE
Q psy12803 752 NTNIRFALDLYKNDLLEVS----LNFTNPF--TNTTMITYNSRYKDLYTW 795 (902)
Q Consensus 752 ~~~I~y~~Dt~~~~~~~~~----i~f~~~~--~~~~~l~YnP~d~~LY~w 795 (902)
...--|+||+.+.+=..+. -++++.. ...+++.++ ++||+|
T Consensus 274 ~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~---~~~~~~ 320 (341)
T PLN02153 274 LSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK---NGLLMH 320 (341)
T ss_pred ccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCc---ceEEEE
Confidence 1224699999998755443 1344432 234444444 677775
No 396
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=87.06 E-value=2.2 Score=39.22 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=40.4
Q ss_pred eecCceEEEEEEee-ccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCe-EEEEEEEeCCc
Q psy12803 381 VPIGRTATLECEVE-AFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFD-TYRCISKNEVD 456 (902)
Q Consensus 381 v~~G~~v~L~C~a~-g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG-~YtC~A~N~~G 456 (902)
+.+|..+++.|.+. ..|. .+|.|++.+..+.... +.............+.++|.- +.+|.| +|+|.|.=.++
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~---f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS---FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc---cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 57899999999996 4465 5789976554443211 110000000000123355554 477777 99999865443
No 397
>PHA03270 envelope glycoprotein C; Provisional
Probab=86.95 E-value=6.5 Score=44.88 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=61.2
Q ss_pred EEEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCC--ccceeccCCcEEEEeeeeecCc------eeEEeecC--
Q psy12803 301 IVVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGS--WKDSAVASSTLNFTRINRINMG------AYMCLADN-- 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~--~~~~~~~~~sL~I~~Vt~~DsG------~YtC~A~N-- 367 (902)
..+.+|+...-.|.+.. +| ...++|++++..+..... .......++-..++-++.++.+ +.+|.+.=
T Consensus 229 ~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r 308 (466)
T PHA03270 229 HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR 308 (466)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence 34679999999999987 44 346999998877643222 1122223443455666666654 66897742
Q ss_pred -----------CCCEEEEcCce-eeeecCceEEEEEEeeccC-CceEEEEecCCee
Q psy12803 368 -----------VPPQILIRNRR-VGVPIGRTATLECEVEAFP-LSVRYWEFIDGTL 410 (902)
Q Consensus 368 -----------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l 410 (902)
..|.+...+.. +....|. ..|.+.-.| ...+.|..++...
T Consensus 309 d~vS~sR~nAa~~P~VY~~P~Isv~F~dG~---AVCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 309 DSVSFSRRNATGAPTVLPRPTIEMEFGGDE---AVCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred CCccceeecccccCccccCCeEEEEEeCCE---EEEeccccCCCCEEEEEecCCCC
Confidence 22333323322 2222222 236665555 3478998877655
No 398
>PHA03269 envelope glycoprotein C; Provisional
Probab=86.14 E-value=9.3 Score=44.22 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=73.2
Q ss_pred EEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCC-ccceeccCCcE-EEEeeee-ec-Ccee-----EEeecC--
Q psy12803 302 VVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGS-WKDSAVASSTL-NFTRINR-IN-MGAY-----MCLADN-- 367 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~-~~~~~~~~~sL-~I~~Vt~-~D-sG~Y-----tC~A~N-- 367 (902)
.+.+|+...-.|.+.. +| ...++|++++..+..... .......++.+ .++-++. ++ ++.| +|.+.=
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R 417 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR 417 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence 4679999999999987 44 346899998776643111 11122333422 2333333 22 3454 897742
Q ss_pred -----------CCCEEEEcCce-eeeecCceEEEEEEeeccCC--ceEEEEecCCeeeecCCceEEEeecCCCceeeEeE
Q psy12803 368 -----------VPPQILIRNRR-VGVPIGRTATLECEVEAFPL--SVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433 (902)
Q Consensus 368 -----------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~st 433 (902)
..|.+...+.. +....| .-.|.+.-.|. ..+.|..++......+...........+.
T Consensus 418 DsVS~tRfnAaatP~VY~~PtISm~FedG---~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGL------ 488 (566)
T PHA03269 418 DGVSHMKYSAAVTPDVYPFPNVSIEIIDG---HIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRF------ 488 (566)
T ss_pred CCchheecccccCCccccCCeEEEEEeCC---EEEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCc------
Confidence 22333223322 222223 23477776664 47899888766322221111112222222
Q ss_pred EEEec---cCCCC-CeEEEEEEEe
Q psy12803 434 LNISN---VNISD-FDTYRCISKN 453 (902)
Q Consensus 434 L~I~~---V~~~D-sG~YtC~A~N 453 (902)
..|.+ +..+| --.|+|.+.-
T Consensus 489 VNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 489 VNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred eeecccccccccCCceeEEEEEee
Confidence 44555 33333 1389998754
No 399
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=85.55 E-value=1 Score=48.17 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCC
Q psy12803 397 PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEV 455 (902)
Q Consensus 397 P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~ 455 (902)
..|.+.|...++.++. ....+.+.. .+ .|.+.+..++++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~-gn~~~nIT~--TG------~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLS-GNSYVNITE--TG------KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccC-CCCeEEEcc--Cc------eEEeeccccccCCceEEEEEEEe
Confidence 3588999988877765 333344433 33 39999999999999999987654
No 400
>PHA03042 CD47-like protein; Provisional
Probab=85.40 E-value=3.4 Score=44.38 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=46.8
Q ss_pred cCceEEEEEEeecc-----CCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCce
Q psy12803 383 IGRTATLECEVEAF-----PLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDI 457 (902)
Q Consensus 383 ~G~~v~L~C~a~g~-----P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~ 457 (902)
-.+++.+.|.+... -.-.+.|.+++..+...+..+ .++|.+.... .=.|+|||.|.+...+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-------------~aSL~~~f~~-~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-------------TSSLKFNFSK-NLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-------------ceEEEEeccc-cCCCceeEEEeecccC
Confidence 36789999988643 355799988877665433321 1336665443 3479999999987766
Q ss_pred eEEEEEEEee
Q psy12803 458 AKGSLILFES 467 (902)
Q Consensus 458 ~~~s~~L~V~ 467 (902)
.+..++|.-.
T Consensus 96 gk~~IeLk~~ 105 (286)
T PHA03042 96 IKNTIELQYV 105 (286)
T ss_pred ccEEEEEEEE
Confidence 5655555543
No 401
>PHA02982 hypothetical protein; Provisional
Probab=85.28 E-value=2.1 Score=44.08 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=50.9
Q ss_pred eeeeecCceEEEEEEee-ccCCceEEEEecCCeeeecC-----------------CceEEEeecCCCceeeEeEEEEecc
Q psy12803 378 RVGVPIGRTATLECEVE-AFPLSVRYWEFIDGTLIEHD-----------------GVKYSISDVDKGSYQYIMQLNISNV 439 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~-g~P~P~v~W~k~~~~l~~~~-----------------~~~~~~~~~~~~s~~~~stL~I~~V 439 (902)
++...++++|.|.|... +.--....|+..++..+... ...+..+... ..|+|+|.++
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-----~~STLTIkk~ 107 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-----NSSTFTMKKP 107 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-----cceeEEeccC
Confidence 45567899999999842 22344678987766554311 1112222222 2568999999
Q ss_pred CCCCCeEEEEEEEeCCcee
Q psy12803 440 NISDFDTYRCISKNEVDIA 458 (902)
Q Consensus 440 ~~~DsG~YtC~A~N~~G~~ 458 (902)
..+..|=|+|+|+...+..
T Consensus 108 ~i~N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 108 DPQNLGCFTCEAKDAEGKE 126 (251)
T ss_pred CcccCCceEEEEecCCCch
Confidence 9999999999999876544
No 402
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=85.12 E-value=6.8 Score=36.39 Aligned_cols=35 Identities=17% Similarity=0.031 Sum_probs=28.1
Q ss_pred EEEEeccCCCCCeEEEEEEEeCCcee-EEEEEEEee
Q psy12803 433 QLNISNVNISDFDTYRCISKNEVDIA-KGSLILFES 467 (902)
Q Consensus 433 tL~I~~V~~~DsG~YtC~A~N~~G~~-~~s~~L~V~ 467 (902)
+|.|+.++..|+|.|.-.+.|..|.. ...+.|.|-
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 39999999999999999999999988 466666653
No 403
>KOG0613|consensus
Probab=84.88 E-value=1.8 Score=55.18 Aligned_cols=88 Identities=8% Similarity=-0.164 Sum_probs=59.9
Q ss_pred eeeeecCceEEEEEEeeccCCce-EEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 378 RVGVPIGRTATLECEVEAFPLSV-RYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 378 ~~~v~~G~~v~L~C~a~g~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
.+.+..+..+++.|...+.+.|. ++|++.........+....... ..+.-.+.|..+...+.+.|.|.|.|..|
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~ts~~~~~~~~~~~e~~~~~~~a~n~~g 417 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVG-----TVTSHTYTIKDAGPGEGYFTRVPAVNKGG 417 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccc-----cccCcchhhhhcCcccccccccceeccCC
Confidence 34455677899999999998886 9998776554332222111111 11233588999999999999999999999
Q ss_pred eeEEEEEEEeecCC
Q psy12803 457 IAKGSLILFESNAK 470 (902)
Q Consensus 457 ~~~~s~~L~V~~~p 470 (902)
.........|....
T Consensus 418 ~~~~~~~~~vs~~~ 431 (1205)
T KOG0613|consen 418 TEQTIAESTVSEEM 431 (1205)
T ss_pred cccccchhhccccc
Confidence 87666555555433
No 404
>PHA03271 envelope glycoprotein C; Provisional
Probab=84.82 E-value=7 Score=44.35 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=63.7
Q ss_pred cEEEEeeeeecCceeEEeecC-----------------CCCEEEEcCceeeeecCceEEEEEEeecc-CC--ceEEEEec
Q psy12803 347 TLNFTRINRINMGAYMCLADN-----------------VPPQILIRNRRVGVPIGRTATLECEVEAF-PL--SVRYWEFI 406 (902)
Q Consensus 347 sL~I~~Vt~~DsG~YtC~A~N-----------------~~P~i~~~p~~~~v~~G~~v~L~C~a~g~-P~--P~v~W~k~ 406 (902)
.|.|.+|...|+|.|+-...+ .+|.+.+.+. .+.+|+...-.|.+..+ |. ..+.|+.+
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 699999999999977555544 2333333332 36789999999998755 53 36889998
Q ss_pred CCeeeecCCceEEE-eecCCCceeeEeEEEEeccCCCCCeEEEEEEEe
Q psy12803 407 DGTLIEHDGVKYSI-SDVDKGSYQYIMQLNISNVNISDFDTYRCISKN 453 (902)
Q Consensus 407 ~~~l~~~~~~~~~~-~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N 453 (902)
+............. -..........|+|.+.+...+--=+.+|.+.=
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W 333 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAW 333 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEE
Confidence 77664433222221 112222333456666655433333389998743
No 405
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=83.89 E-value=31 Score=39.16 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=83.4
Q ss_pred cEEEEcCCeEEEEEecC--CC-CCCceEEecCCCccccc-----------------CCccc-------eeccCCcEEEEe
Q psy12803 300 PIVVREGDNVRLRCVAT--GH-PKPSIIWKTSENKPITL-----------------GSWKD-------SAVASSTLNFTR 352 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~--G~-P~p~v~W~k~~~~~~~~-----------------~~~~~-------~~~~~~sL~I~~ 352 (902)
.+.+..|..|.|.|..+ |+ --..+.|+-.+-+.-+. .+..+ .-...++|+|.+
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 36677799999999866 33 34468898655332210 00001 112346899999
Q ss_pred eeeecCceeEEeecCC------CCEEEEcCc--eeeeecCc-eEEEEEEeecc--CCceEEEEecCCeeeecCCceEEEe
Q psy12803 353 INRINMGAYMCLADNV------PPQILIRNR--RVGVPIGR-TATLECEVEAF--PLSVRYWEFIDGTLIEHDGVKYSIS 421 (902)
Q Consensus 353 Vt~~DsG~YtC~A~N~------~P~i~~~p~--~~~v~~G~-~v~L~C~a~g~--P~P~v~W~k~~~~l~~~~~~~~~~~ 421 (902)
+..+.+|-|+|+|... .--+.+..+ -....+++ .....|-+-.. -++.+.|..++-......-..+...
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~ 432 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEH 432 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEEeccCceEEEEEEEEecccCCceeEEEEccEEecCeecCccccc
Confidence 9999999999999871 111111111 11233544 45678977555 3457999766533211100000000
Q ss_pred ecCCCceeeEeEEEEeccCCCC-CeEEEEEEEeCCcee
Q psy12803 422 DVDKGSYQYIMQLNISNVNISD-FDTYRCISKNEVDIA 458 (902)
Q Consensus 422 ~~~~~s~~~~stL~I~~V~~~D-sG~YtC~A~N~~G~~ 458 (902)
....-..-..+.+.|.+-...| --.-.|+..-..+.+
T Consensus 433 ~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Ya 470 (500)
T PHA02914 433 EGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGYA 470 (500)
T ss_pred ccccccccceEEEEEecccCccccccceEEEecCCCce
Confidence 0000001123457777665555 345667765555543
No 406
>PHA03098 kelch-like protein; Provisional
Probab=83.70 E-value=51 Score=39.53 Aligned_cols=151 Identities=25% Similarity=0.298 Sum_probs=86.6
Q ss_pred eCcCCCCCcceEEEcCeEEEeec-----CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEE
Q psy12803 627 NLKEPFQGNAHVVFNNSFYYHKK-----FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYG 701 (902)
Q Consensus 627 ~l~~~~~Gtg~vvyng~lYy~~~-----~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~ 701 (902)
.+|.+-.+.+.++++|.||---. ....+-+||+.+.+-.....++. .+ + .+ -.++-++-++|+=+
T Consensus 328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~--~r---~--~~---~~~~~~~~iYv~GG 397 (534)
T PHA03098 328 ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF--PR---Y--NP---CVVNVNNLIYVIGG 397 (534)
T ss_pred CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc--CC---c--cc---eEEEECCEEEEECC
Confidence 45556677888999999997422 23578899999886544333332 11 1 11 12344455555422
Q ss_pred cC-CCc--EEEEeeCCCCcceeEEEEecc--cc-ccccceEEEecEEEEEeecCCCc----ceEEEEEeCCCCceeeee-
Q psy12803 702 LS-NNN--TAVTKLDTATLQIQYTWNITL--LH-KKVGDMFVVCGVLYVVDSVTDRN----TNIRFALDLYKNDLLEVS- 770 (902)
Q Consensus 702 ~~-~~~--ivvskld~~~l~v~~tw~t~~--~k-~~~~naFmvCGvLY~~~s~~~~~----~~I~y~~Dt~~~~~~~~~- 770 (902)
.. .+. -.+-+.|+.+ .+|..-- +. +....|...=|.||++--.+... ....+.||+.+++-..+.
T Consensus 398 ~~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 398 ISKNDELLKTVECFSLNT----NKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred cCCCCcccceEEEEeCCC----CeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence 21 111 2456677764 4676532 22 22333556678899986533211 234799999999865543
Q ss_pred eeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 771 LNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 771 i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
++++. ...+++.+ +.+||++-
T Consensus 474 ~~~~r--~~~~~~~~---~~~iyv~G 494 (534)
T PHA03098 474 LNFPR--INASLCIF---NNKIYVVG 494 (534)
T ss_pred CCccc--ccceEEEE---CCEEEEEc
Confidence 44443 33455555 68899986
No 407
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.61 E-value=54 Score=36.97 Aligned_cols=164 Identities=20% Similarity=0.266 Sum_probs=92.7
Q ss_pred CCceEEEecCCCCCceEeecC--hh-hhcccCCcceEeCcCCCCCcceEEEc---CeEEEeecCCccEEEEEcC--CccE
Q psy12803 593 NSEKFWMTTDSDPTHLNEYKD--KD-MFKSDAKSWTYNLKEPFQGNAHVVFN---NSFYYHKKFSNSIVQFDLG--SSKI 664 (902)
Q Consensus 593 ~~~~~~~~~~~~~~~~~ey~~--~~-~~~~~~~~~~~~l~~~~~Gtg~vvyn---g~lYy~~~~s~~ivkydl~--~~~~ 664 (902)
+...+|+... ..+.|..|+= .. .+.. ...+.+| ...|.=|+++. ..+|-..+.++.|..|++. +...
T Consensus 154 dg~~v~v~dl-G~D~v~~~~~~~~~~~l~~---~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 154 DGRFVYVPDL-GADRVYVYDIDDDTGKLTP---VDSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp TSSEEEEEET-TTTEEEEEEE-TTS-TEEE---EEEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEec-CCCEEEEEEEeCCCceEEE---eeccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 3446666543 2344544432 11 1222 2244454 35677799995 3566678888888888888 4444
Q ss_pred EEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCC--CcceeEEEEeccccccccceEEE--e
Q psy12803 665 INIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTA--TLQIQYTWNITLLHKKVGDMFVV--C 739 (902)
Q Consensus 665 ~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~--~l~v~~tw~t~~~k~~~~naFmv--C 739 (902)
.....++.... -+.....--+++++.+|-|+.-+.. .+.|++=+||+. .|+..+.+.|.-..+ ..|.+ .
T Consensus 229 ~~~~~~~~~~~---~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P---r~~~~s~~ 302 (345)
T PF10282_consen 229 TEIQTISTLPE---GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP---RHFAFSPD 302 (345)
T ss_dssp EEEEEEESCET---TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---EEEEE-TT
T ss_pred eEEEEeeeccc---cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---cEEEEeCC
Confidence 33332221101 1222235567778888877655554 678999999876 588888877742211 23333 4
Q ss_pred cE-EEEEeecCCCcceEEEEEeCCCCceeee
Q psy12803 740 GV-LYVVDSVTDRNTNIRFALDLYKNDLLEV 769 (902)
Q Consensus 740 Gv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~ 769 (902)
|- |||.... .+.-..|..|..+++...+
T Consensus 303 g~~l~Va~~~--s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 303 GRYLYVANQD--SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SSEEEEEETT--TTEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEecC--CCeEEEEEEeCCCCcEEEe
Confidence 44 5555432 3445677889999886654
No 408
>PHA03271 envelope glycoprotein C; Provisional
Probab=82.07 E-value=18 Score=41.22 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=56.9
Q ss_pred EEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCCcccee----ccCCcEEEEeeeeecCc-----eeEEeecC--
Q psy12803 302 VVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGSWKDSA----VASSTLNFTRINRINMG-----AYMCLADN-- 367 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~~~~~~----~~~~sL~I~~Vt~~DsG-----~YtC~A~N-- 367 (902)
.+.+|+...-.|.+.. .| ...++|++++............. ..++.-.++.++.++++ +.+|.+.=
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~r 335 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQ 335 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEcc
Confidence 3678999999999987 44 34689999877654433211111 11122223344444444 67887742
Q ss_pred ----------CCCEEEEcCce-eeeecCceEEEEEEeeccC-CceEEEEecCCee
Q psy12803 368 ----------VPPQILIRNRR-VGVPIGRTATLECEVEAFP-LSVRYWEFIDGTL 410 (902)
Q Consensus 368 ----------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P-~P~v~W~k~~~~l 410 (902)
..|.+-.+|.. +....|. -.|.+.--| ...+.|..++...
T Consensus 336 d~v~s~rnAaatP~VY~~P~ISv~FedG~---AVCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 336 GDMISTTNATAIPTVYHHPRISLAFKDGY---AICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred CCceeeeecccCCccccCCeEEEEEeCCE---EEEeccccCCCcEEEEEecCCCC
Confidence 22333223322 2222232 236665544 3478998877654
No 409
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=81.08 E-value=17 Score=32.11 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=24.4
Q ss_pred EEEeccCCCCCeEEEEEE-EeCCceeEEEEEEEe
Q psy12803 434 LNISNVNISDFDTYRCIS-KNEVDIAKGSLILFE 466 (902)
Q Consensus 434 L~I~~V~~~DsG~YtC~A-~N~~G~~~~s~~L~V 466 (902)
+.....+.+|+|.++|.| .+..-.....+.|.|
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 566677889999999999 666555566666655
No 410
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=81.06 E-value=47 Score=35.19 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=94.2
Q ss_pred EeCcCCCCCcceEEE--cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCc-cEEEEEc
Q psy12803 626 YNLKEPFQGNAHVVF--NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENG-LWVIYGL 702 (902)
Q Consensus 626 ~~l~~~~~Gtg~vvy--ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~G-LWviY~~ 702 (902)
+.++- =.|.++- +|.||.-.. ..+..+|+.++++.....+..... ....-=|+++|.+| ||+.=..
T Consensus 37 ~~~~~---~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~------~~~~~ND~~vd~~G~ly~t~~~ 105 (246)
T PF08450_consen 37 IDLPG---PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGV------PFNRPNDVAVDPDGNLYVTDSG 105 (246)
T ss_dssp EESSS---EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCS------CTEEEEEEEE-TTS-EEEEEEC
T ss_pred EecCC---CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCc------ccCCCceEEEcCCCCEEEEecC
Confidence 45553 4555555 588877744 456666999998866555431100 11233589999999 5544222
Q ss_pred C-C--Cc--EEEEeeCCCCcceeEEEEeccccccccceEEEec-EEEEEeecCCCcceEEEEEeCCCCceee--eeeeec
Q psy12803 703 S-N--NN--TAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCG-VLYVVDSVTDRNTNIRFALDLYKNDLLE--VSLNFT 774 (902)
Q Consensus 703 ~-~--~~--ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~y~~Dt~~~~~~~--~~i~f~ 774 (902)
. . .. =.|-++++. .++...++- + ...-+=||---| .||++++.. ..-..|.+|..+.+... +-+.|.
T Consensus 106 ~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (246)
T PF08450_consen 106 GGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFP 180 (246)
T ss_dssp CBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred CCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcC
Confidence 1 1 11 358888888 555444432 2 222344566667 899998854 33445556555553333 335666
Q ss_pred CCCCCceeeecCCCCCeEEEE--eCCeEEEEEeE
Q psy12803 775 NPFTNTTMITYNSRYKDLYTW--DRGNSLTYPIR 806 (902)
Q Consensus 775 ~~~~~~~~l~YnP~d~~LY~w--d~g~~~~Y~v~ 806 (902)
......--|..+. |..||+= .++.++.|+-.
T Consensus 181 ~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 181 GGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT
T ss_pred CCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC
Confidence 6665567777877 5678865 67888888754
No 411
>PHA03273 envelope glycoprotein C; Provisional
Probab=80.24 E-value=19 Score=41.64 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=57.4
Q ss_pred EEEEcCCeEEEEEecCC-CC--CCceEEecCCCcccccCC--ccceeccCC-cEEEEeeeeec-Cc-----eeEEeecC-
Q psy12803 301 IVVREGDNVRLRCVATG-HP--KPSIIWKTSENKPITLGS--WKDSAVASS-TLNFTRINRIN-MG-----AYMCLADN- 367 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G-~P--~p~v~W~k~~~~~~~~~~--~~~~~~~~~-sL~I~~Vt~~D-sG-----~YtC~A~N- 367 (902)
..+.+|+...-.|.+.. .| ...++|++++..+..... .......++ ...++-++.++ .+ +.+|.+.=
T Consensus 245 ~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~ 324 (486)
T PHA03273 245 HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY 324 (486)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence 34779999999999987 44 346999998887652111 111212222 12333333333 22 56887742
Q ss_pred ------------CCCEEEEcCce-eeeecCceEEEEEEeeccCC--ceEEEEecCC
Q psy12803 368 ------------VPPQILIRNRR-VGVPIGRTATLECEVEAFPL--SVRYWEFIDG 408 (902)
Q Consensus 368 ------------~~P~i~~~p~~-~~v~~G~~v~L~C~a~g~P~--P~v~W~k~~~ 408 (902)
..|.+...|.. +....| ...|.+.-.|. ..+.|..++.
T Consensus 325 rd~vS~~RfsAt~~P~Vy~~P~Is~~F~~G---~AVCtA~CVP~egV~l~W~v~D~ 377 (486)
T PHA03273 325 RDEVSFARIAKAGTPSVFVAPTVSVTVEDG---DAVCTAKCVPSTGVFVSWSVNDH 377 (486)
T ss_pred cCCcceeeccccccCccccCCeEEEEEeCC---EEEEecccccCCCeeEEEEccCC
Confidence 22333323322 222222 23477777765 6889988773
No 412
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=79.43 E-value=90 Score=33.11 Aligned_cols=144 Identities=12% Similarity=0.080 Sum_probs=76.7
Q ss_pred cCeEEEeecCC-ccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcc
Q psy12803 641 NNSFYYHKKFS-NSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQ 718 (902)
Q Consensus 641 ng~lYy~~~~s-~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~ 718 (902)
+|.+++..... ..+..||+.+.++........ .-.. ++.+.+|-|++.+.. .+.+.+ +|..+..
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------~~~~--~~~s~dg~~l~~~~~~~~~v~i--~d~~~~~ 190 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ----------RPRF--AEFTADGKELWVSSEIGGTVSV--IDVATRK 190 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC----------CccE--EEECCCCCEEEEEcCCCCEEEE--EEcCcce
Confidence 35554443333 345667988876643322110 1122 445556666665654 555554 5666666
Q ss_pred eeEEEEeccccccccceEEEec--------EEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCC
Q psy12803 719 IQYTWNITLLHKKVGDMFVVCG--------VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYK 790 (902)
Q Consensus 719 v~~tw~t~~~k~~~~naFmvCG--------vLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~ 790 (902)
+.+++.....-. ....+..++ .+|+... .+.+| ..||..+.+.... +. ......+|.++|..+
T Consensus 191 ~~~~~~~~~~~~-~~~~~~~~~i~~s~dg~~~~~~~~---~~~~i-~v~d~~~~~~~~~-~~---~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 191 VIKKITFEIPGV-HPEAVQPVGIKLTKDGKTAFVALG---PANRV-AVVDAKTYEVLDY-LL---VGQRVWQLAFTPDEK 261 (300)
T ss_pred eeeeeeeccccc-ccccCCccceEECCCCCEEEEEcC---CCCeE-EEEECCCCcEEEE-EE---eCCCcceEEECCCCC
Confidence 666655332100 001122222 2344322 12233 5789877654321 11 123577899999999
Q ss_pred eEEEE--eCCeEEEEEeEE
Q psy12803 791 DLYTW--DRGNSLTYPIRY 807 (902)
Q Consensus 791 ~LY~w--d~g~~~~Y~v~f 807 (902)
.||+= ++|.+..|+++=
T Consensus 262 ~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EEEEEcCCCCeEEEEECCC
Confidence 99974 589999999873
No 413
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=78.85 E-value=44 Score=37.18 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=80.9
Q ss_pred eCcCCCCCcceEEEcCeEEEee-----cCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEE
Q psy12803 627 NLKEPFQGNAHVVFNNSFYYHK-----KFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYG 701 (902)
Q Consensus 627 ~l~~~~~Gtg~vvyng~lYy~~-----~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~ 701 (902)
.||.+..+...+++++.||.-= ...+.+.+||+.+.+-.....++. ..+ ..+ =.++-++-|+|+=+
T Consensus 109 ~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r-----~~~---~~~~~~~~iYv~GG 179 (323)
T TIGR03548 109 NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPR-----VQP---VCVKLQNELYVFGG 179 (323)
T ss_pred CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCC-----Ccc---eEEEECCEEEEEcC
Confidence 4666666777889999999742 234689999999886543222221 011 011 12345566776633
Q ss_pred cCCC-cEEEEeeCCCCcceeEEEEeccc-------ccc-ccceEEEe-cEEEEEeecCCCc-------------------
Q psy12803 702 LSNN-NTAVTKLDTATLQIQYTWNITLL-------HKK-VGDMFVVC-GVLYVVDSVTDRN------------------- 752 (902)
Q Consensus 702 ~~~~-~ivvskld~~~l~v~~tw~t~~~-------k~~-~~naFmvC-GvLY~~~s~~~~~------------------- 752 (902)
.... ..-+-..|+.+ .+|..--. +.. ...++++. +.||++-..+...
T Consensus 180 ~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 255 (323)
T TIGR03548 180 GSNIAYTDGYKYSPKK----NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGY 255 (323)
T ss_pred CCCccccceEEEecCC----CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhh
Confidence 2211 11223455553 46855321 111 23345555 7899986543210
Q ss_pred --------------ceEEEEEeCCCCceeeee-eeecCCCCCceeeecCCCCCeEEEEeC
Q psy12803 753 --------------TNIRFALDLYKNDLLEVS-LNFTNPFTNTTMITYNSRYKDLYTWDR 797 (902)
Q Consensus 753 --------------~~I~y~~Dt~~~~~~~~~-i~f~~~~~~~~~l~YnP~d~~LY~wd~ 797 (902)
..--++||+.+++=..+. +++..+. ..+++.. +.+||+.--
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~-~~~~~~~---~~~iyv~GG 311 (323)
T TIGR03548 256 KKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC-GAALLLT---GNNIFSING 311 (323)
T ss_pred HHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccC-chheEEE---CCEEEEEec
Confidence 123688999998865544 4433222 2233333 456777653
No 414
>KOG1984|consensus
Probab=78.18 E-value=53 Score=40.92 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=17.5
Q ss_pred cccceEEEecEEEEEeecCCCcceEEEEE
Q psy12803 731 KVGDMFVVCGVLYVVDSVTDRNTNIRFAL 759 (902)
Q Consensus 731 ~~~naFmvCGvLY~~~s~~~~~~~I~y~~ 759 (902)
....+++-|-+||.+=+...+-..+++.+
T Consensus 712 ~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl 740 (1007)
T KOG1984|consen 712 DGSDVHFQTALLYTTIDGQRRLRVLNLSL 740 (1007)
T ss_pred CCcceeEEEEEEEeccCCceeEEEEecch
Confidence 35668888999998755433333344433
No 415
>KOG4597|consensus
Probab=77.26 E-value=3.2 Score=47.65 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=49.8
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCC---CcccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSE---NKPITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~---~~~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
.-.+.+++++.++|-+.|.+.+.|+|.+.- ..++.... .+..+.....|.|-+....|+|.|+|.+.|
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 345778999999999999999999997631 11111110 122233345799999999999999999999
No 416
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=76.55 E-value=0.062 Score=43.29 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=32.6
Q ss_pred eeEeeccccccccccCCCCCCceEe-eCchhHHHHHHHhhhhhcccCCCcceee
Q psy12803 36 FRRHVDKDKGDIFDNSVPQTPHVEF-VPPDLYEEIREREKEQQNSTHNNPWVWL 88 (902)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~w~~l 88 (902)
|+++.+...+.++.+....+.+..| ...+++++++.+ +.+||..+||+|.+|
T Consensus 1 ~va~~a~~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~e-m~~fk~~s~d~W~~m 53 (53)
T PF01484_consen 1 FVAYGAIVVSTVAILSCLITVPSIYNDIQNFQSELDDE-MEEFKEISDDAWNEM 53 (53)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC
Confidence 3445555555555555444333333 445566666655 999999999999865
No 417
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=76.03 E-value=50 Score=29.99 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=49.9
Q ss_pred EEEEcCceeeeecCceEEEEEEeeccCCc-eEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEE
Q psy12803 371 QILIRNRRVGVPIGRTATLECEVEAFPLS-VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449 (902)
Q Consensus 371 ~i~~~p~~~~v~~G~~v~L~C~a~g~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC 449 (902)
.+.+.|....|..|+++.+.|... -|.| .+-|...-... ....... -..+.|.+|+. | ..-.|
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~--------~~~~g~~-----W~~f~LsnV~~-d-s~~~C 68 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKT--------ELDSGPQ-----WKAFQLSNVTE-D-SSPLC 68 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSEEE--------EEEEETT-----EEEEEEEEE-S-C-EEEEE
T ss_pred EEEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecCCc--------ccCCCCc-----EEEEEEEcccc-C-CeEEE
Confidence 345677888899999999999874 3434 44553221111 1111111 12377788886 5 57789
Q ss_pred EEEeCCceeEEEEEEEeecCC
Q psy12803 450 ISKNEVDIAKGSLILFESNAK 470 (902)
Q Consensus 450 ~A~N~~G~~~~s~~L~V~~~p 470 (902)
.+.-.......++.|+|..+|
T Consensus 69 ~~~C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 69 FFNCSGEQSSASANITVYKPP 89 (91)
T ss_dssp EEEETTEEEEEEEEEEEEB--
T ss_pred EEEcCCeEEEeEEeeEEeCCC
Confidence 998765555788888887665
No 418
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=75.77 E-value=9.6 Score=42.69 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=38.8
Q ss_pred eEEEEEEeecc-CC-ceEEEEec---------C---CeeeecCC-------ceEEEeecCC-CceeeEeEEEEeccCCCC
Q psy12803 386 TATLECEVEAF-PL-SVRYWEFI---------D---GTLIEHDG-------VKYSISDVDK-GSYQYIMQLNISNVNISD 443 (902)
Q Consensus 386 ~v~L~C~a~g~-P~-P~v~W~k~---------~---~~l~~~~~-------~~~~~~~~~~-~s~~~~stL~I~~V~~~D 443 (902)
.++|.|.|.|+ |. ..+.|.++ + ..+..... ....+....+ ++++....+. +...+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~---v~~~~ 292 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVR---VPTDM 292 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEE---eCCCC
Confidence 58999999988 43 36889888 2 11111000 0011233445 4777666664 34567
Q ss_pred CeEEEEEEEeC
Q psy12803 444 FDTYRCISKNE 454 (902)
Q Consensus 444 sG~YtC~A~N~ 454 (902)
...|+|++...
T Consensus 293 ~~~Y~C~V~Hs 303 (338)
T PHA02865 293 SNQIVCVVFHS 303 (338)
T ss_pred CCCcEEEEEeC
Confidence 77799998664
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=74.92 E-value=43 Score=39.82 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=78.4
Q ss_pred eCcCCCCCcceEEEcCeEEEeec--CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCC
Q psy12803 627 NLKEPFQGNAHVVFNNSFYYHKK--FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSN 704 (902)
Q Consensus 627 ~l~~~~~Gtg~vvyng~lYy~~~--~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~ 704 (902)
.|+.+-...+.++.+|.||---. +...+-+||..+.+-.....++. . -...=.++-++-|+||=+...
T Consensus 304 ~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~--~--------r~~~~~~~~~g~IYviGG~~~ 373 (480)
T PHA02790 304 PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK--P--------RCNPAVASINNVIYVIGGHSE 373 (480)
T ss_pred CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC--C--------CcccEEEEECCEEEEecCcCC
Confidence 45555555667889999998632 23568899987764433223321 1 122334555666666622211
Q ss_pred CcEEEEeeCCCCcceeEEEEec--ccccccc-ceEEEecEEEEEeecCCCcceEEEEEeCCCCceeee-eeeecCCCCCc
Q psy12803 705 NNTAVTKLDTATLQIQYTWNIT--LLHKKVG-DMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEV-SLNFTNPFTNT 780 (902)
Q Consensus 705 ~~ivvskld~~~l~v~~tw~t~--~~k~~~~-naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~-~i~f~~~~~~~ 780 (902)
..-.+...||. .++|..- .+.+... .|=.+-|.||++-.. ...||..+++-..+ +++.+.. ..
T Consensus 374 ~~~~ve~ydp~----~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-------~e~ydp~~~~W~~~~~m~~~r~--~~ 440 (480)
T PHA02790 374 TDTTTEYLLPN----HDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-------AEFYCESSNTWTLIDDPIYPRD--NP 440 (480)
T ss_pred CCccEEEEeCC----CCEEEeCCCCCCccccceEEEECCEEEEECCc-------eEEecCCCCcEeEcCCCCCCcc--cc
Confidence 11234556665 4678763 2222222 233567899999631 24689988886553 3544333 23
Q ss_pred eeeecCCCCCeEEEEe
Q psy12803 781 TMITYNSRYKDLYTWD 796 (902)
Q Consensus 781 ~~l~YnP~d~~LY~wd 796 (902)
.++-+ +.+||+.-
T Consensus 441 ~~~v~---~~~IYviG 453 (480)
T PHA02790 441 ELIIV---DNKLLLIG 453 (480)
T ss_pred EEEEE---CCEEEEEC
Confidence 33322 45788863
No 420
>PLN02193 nitrile-specifier protein
Probab=74.68 E-value=1.4e+02 Score=35.39 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=80.1
Q ss_pred CCcceEEEcCeEEEee-----cCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCc
Q psy12803 633 QGNAHVVFNNSFYYHK-----KFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNN 706 (902)
Q Consensus 633 ~Gtg~vvyng~lYy~~-----~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ 706 (902)
.+...+++++.||--- ...+.+.+||+.+.+-.....+.. .-... ...-.++.++-|+|+=+.. ...
T Consensus 220 ~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~--~P~~R-----~~h~~~~~~~~iYv~GG~~~~~~ 292 (470)
T PLN02193 220 LGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE--GPTPR-----SFHSMAADEENVYVFGGVSATAR 292 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC--CCCCc-----cceEEEEECCEEEEECCCCCCCC
Confidence 3555678899998642 123589999999975433222210 00011 1122455555555542222 111
Q ss_pred -EEEEeeCCCCcceeEEEEecc------ccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeee----eeecC
Q psy12803 707 -TAVTKLDTATLQIQYTWNITL------LHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVS----LNFTN 775 (902)
Q Consensus 707 -ivvskld~~~l~v~~tw~t~~------~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~----i~f~~ 775 (902)
--+-.+|+.+ .+|..-- ..+....+.++-|.||++-..+.....-.+.||+.+++-..+. .+.+.
T Consensus 293 ~~~~~~yd~~t----~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 293 LKTLDSYNIVD----KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred cceEEEEECCC----CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 1234455554 4676421 1122334556778999997644323345789999999866543 23333
Q ss_pred CCCCceeeecCCCCCeEEEEeC
Q psy12803 776 PFTNTTMITYNSRYKDLYTWDR 797 (902)
Q Consensus 776 ~~~~~~~l~YnP~d~~LY~wd~ 797 (902)
..++++.+ +.+||++--
T Consensus 369 --~~~~~~~~---~~~iyv~GG 385 (470)
T PLN02193 369 --SVFASAAV---GKHIVIFGG 385 (470)
T ss_pred --ceeEEEEE---CCEEEEECC
Confidence 34555555 478999854
No 421
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=74.20 E-value=85 Score=36.99 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=77.0
Q ss_pred cceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEc
Q psy12803 623 SWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGL 702 (902)
Q Consensus 623 ~~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~ 702 (902)
.+++.+++. .-- +|.|.|...+... .|+=||..+++++.+...+. -.+.++ +++|--|.-.+
T Consensus 102 ~k~i~~~~~---~~~-If~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~---vk~V~W----------s~~g~~val~t 163 (443)
T PF04053_consen 102 VKSIKLPFS---VEK-IFGGNLLGVKSSD-FICFYDWETGKLIRRIDVSA---VKYVIW----------SDDGELVALVT 163 (443)
T ss_dssp T-----SS----EEE-EE-SSSEEEEETT-EEEEE-TTT--EEEEESS-E----EEEEE-----------TTSSEEEEE-
T ss_pred ceEEcCCcc---cce-EEcCcEEEEECCC-CEEEEEhhHcceeeEEecCC---CcEEEE----------ECCCCEEEEEe
Confidence 446777742 222 4448888876444 69999999999987776552 122333 33333343334
Q ss_pred CCCcEEEEeeCCC------------CcceeEEEEecccc-ccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeee
Q psy12803 703 SNNNTAVTKLDTA------------TLQIQYTWNITLLH-KKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEV 769 (902)
Q Consensus 703 ~~~~ivvskld~~------------~l~v~~tw~t~~~k-~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~ 769 (902)
++++.|.+.|.+ .|.+.+........ -+++++| +|++. + +|.|-.+-.++.-.
T Consensus 164 -~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~f-----iYtT~-----~-~lkYl~~Ge~~~i~-- 229 (443)
T PF04053_consen 164 -KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCF-----IYTTS-----N-HLKYLVNGETGIIA-- 229 (443)
T ss_dssp -S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEE-----EEE-T-----T-EEEEEETTEEEEEE--
T ss_pred -CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEE-----EEEcC-----C-eEEEEEcCCcceEE--
Confidence 567777777777 67766665555433 5567766 36653 3 88883332222222
Q ss_pred eeeecCCCCCceeeecCCCCCeEEEEeC-CeEEEEEeEEee
Q psy12803 770 SLNFTNPFTNTTMITYNSRYKDLYTWDR-GNSLTYPIRYHE 809 (902)
Q Consensus 770 ~i~f~~~~~~~~~l~YnP~d~~LY~wd~-g~~~~Y~v~f~~ 809 (902)
.+. ..+.-+.|-+++++||.-|. +..++|.|....
T Consensus 230 --~ld---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 230 --HLD---KPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --E-S---S--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred --EcC---CceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 222 36788999999999999976 689999887544
No 422
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=73.97 E-value=59 Score=33.80 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=66.9
Q ss_pred eEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCC
Q psy12803 637 HVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTA 715 (902)
Q Consensus 637 ~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~ 715 (902)
..++++.+|.- .....|+.+|+++.++.-...+.........+......-++.+++. .||... ++. +..+|..
T Consensus 118 ~~~~~~~~~~~-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~g~--~~~~d~~ 191 (238)
T PF13360_consen 118 PAVDGDRLYVG-TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG---RVYVSSGDGR--VVAVDLA 191 (238)
T ss_dssp EEEETTEEEEE-ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT---EEEEECCTSS--EEEEETT
T ss_pred ceEecCEEEEE-eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC---EEEEEcCCCe--EEEEECC
Confidence 33444555544 3477999999999998665655421111111112233455555544 788776 444 3344666
Q ss_pred CcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCcee
Q psy12803 716 TLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLL 767 (902)
Q Consensus 716 ~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~ 767 (902)
+=++. |... .+....-.-+.-++||+... ..--+++|..|++..
T Consensus 192 tg~~~--w~~~-~~~~~~~~~~~~~~l~~~~~-----~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 TGEKL--WSKP-ISGIYSLPSVDGGTLYVTSS-----DGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEE--EEEC-SS-ECECEECCCTEEEEEET-----TTEEEEEETTTTEEE
T ss_pred CCCEE--EEec-CCCccCCceeeCCEEEEEeC-----CCEEEEEECCCCCEE
Confidence 65533 8655 34333335566788888862 246788999988753
No 423
>PHA03042 CD47-like protein; Provisional
Probab=72.96 E-value=5.2 Score=43.03 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=39.4
Q ss_pred EEcCCeEEEEEecCCC-----CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC
Q psy12803 303 VREGDNVRLRCVATGH-----PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 303 v~eGe~v~L~C~a~G~-----P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
-.-.+++.+.|.++.- -...+.|..++......+.. ..++|.+..... =.|+|+|+|.+
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f~~~-l~GNYTCEv~~ 91 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNFSKN-LSGNYTCEAIN 91 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEecccc-CCCceeEEEee
Confidence 3468999999998862 35569999987665433321 124566654433 37999999865
No 424
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=72.83 E-value=1.5e+02 Score=33.00 Aligned_cols=158 Identities=15% Similarity=0.056 Sum_probs=79.3
Q ss_pred eEeCcCCCCCcceEEEcCeEEEeec-----CCccEEEEEcCCccEE-EEEecCCC-CCCcccccCCcccEEEEecCCccE
Q psy12803 625 TYNLKEPFQGNAHVVFNNSFYYHKK-----FSNSIVQFDLGSSKII-NIVNLSTV-DPNIKLYKTGYNVMDFSLDENGLW 697 (902)
Q Consensus 625 ~~~l~~~~~Gtg~vvyng~lYy~~~-----~s~~ivkydl~~~~~~-~~~~~~~~-~~~~~~y~~~~~~iD~avDE~GLW 697 (902)
.-.||.+...-..|++++.||.--. ....+.+||+.+.+-. .+..++.. ..+ ...=.++-++=|+
T Consensus 56 ~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~--------~~~~~~~~~~~iY 127 (323)
T TIGR03548 56 DGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTF--------ENGSACYKDGTLY 127 (323)
T ss_pred cccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCc--------cCceEEEECCEEE
Confidence 3356666554456788999987521 2358999999887641 12222210 011 0111233344455
Q ss_pred EEEEcCCCc--EEEEeeCCCCcceeEEEEec--cc--cccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeee-
Q psy12803 698 VIYGLSNNN--TAVTKLDTATLQIQYTWNIT--LL--HKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVS- 770 (902)
Q Consensus 698 viY~~~~~~--ivvskld~~~l~v~~tw~t~--~~--k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~- 770 (902)
|+=+..++. -.|-++|+.+ ++|..- ++ .+....+.++=+-||++-..+.....=.+.||+.+++=..+.
T Consensus 128 v~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 128 VGGGNRNGKPSNKSYLFNLET----QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred EEeCcCCCccCceEEEEcCCC----CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC
Confidence 553322111 1355667664 457643 22 222222334447899996543211111379999998865543
Q ss_pred e---eecCCCCCceeeecCCCCCeEEEEe
Q psy12803 771 L---NFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 771 i---~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
. .++......+.+.+ .+.+||++=
T Consensus 204 ~~~~~~p~~~~~~~~~~~--~~~~iyv~G 230 (323)
T TIGR03548 204 PTTDSEPISLLGAASIKI--NESLLLCIG 230 (323)
T ss_pred CCCCCCceeccceeEEEE--CCCEEEEEC
Confidence 2 12222223333333 356888873
No 425
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=72.11 E-value=97 Score=32.53 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=42.2
Q ss_pred eEEEcCeEEEeecCCc-----cEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEE
Q psy12803 637 HVVFNNSFYYHKKFSN-----SIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVT 710 (902)
Q Consensus 637 ~vvyng~lYy~~~~s~-----~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvs 710 (902)
-|..||+|||-..... .|+.|||.+++......+|.... .....+.|++=|.-|=++.... .+++-|-
T Consensus 98 ~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~------~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW 171 (230)
T TIGR01640 98 GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS------DSVDYLSLINYKGKLAVLKQKKDTNNFDLW 171 (230)
T ss_pred eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc------ccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence 6788999999764322 69999999998864455563211 1123456666664444443322 2345555
Q ss_pred eeC
Q psy12803 711 KLD 713 (902)
Q Consensus 711 kld 713 (902)
.|+
T Consensus 172 vl~ 174 (230)
T TIGR01640 172 VLN 174 (230)
T ss_pred EEC
Confidence 554
No 426
>PHA02713 hypothetical protein; Provisional
Probab=71.60 E-value=48 Score=40.24 Aligned_cols=151 Identities=11% Similarity=0.174 Sum_probs=83.8
Q ss_pred eCcCCCCCcceEEEcCeEEEeec------CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEE
Q psy12803 627 NLKEPFQGNAHVVFNNSFYYHKK------FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIY 700 (902)
Q Consensus 627 ~l~~~~~Gtg~vvyng~lYy~~~------~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY 700 (902)
.||.+..+.+.++++|.||---. ....+.+||+.+.+-.....++. .+ ...-.|+=++-|.||=
T Consensus 289 ~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R--------~~~~~~~~~g~IYviG 358 (557)
T PHA02713 289 TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NR--------CRFSLAVIDDTIYAIG 358 (557)
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hh--------hceeEEEECCEEEEEC
Confidence 45555566677899999987522 13568899999885432222221 11 2233444445444442
Q ss_pred EcCCCc--EEEEeeCCCCcceeEEEEec--cccccccc-eEEEecEEEEEeecCCC-------------------cceEE
Q psy12803 701 GLSNNN--TAVTKLDTATLQIQYTWNIT--LLHKKVGD-MFVVCGVLYVVDSVTDR-------------------NTNIR 756 (902)
Q Consensus 701 ~~~~~~--ivvskld~~~l~v~~tw~t~--~~k~~~~n-aFmvCGvLY~~~s~~~~-------------------~~~I~ 756 (902)
+..... -.|-..||.+ ++|..- .+...... +-.+-|.||++-..+.. ...--
T Consensus 359 G~~~~~~~~sve~Ydp~~----~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 434 (557)
T PHA02713 359 GQNGTNVERTIECYTMGD----DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKV 434 (557)
T ss_pred CcCCCCCCceEEEEECCC----CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceE
Confidence 111111 1356667764 578873 34433333 33456899999653311 12346
Q ss_pred EEEeCCCCceeee-eeeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 757 FALDLYKNDLLEV-SLNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 757 y~~Dt~~~~~~~~-~i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
+.||+.+++-..+ +++..... ..++..| .+||+.-
T Consensus 435 e~YDP~td~W~~v~~m~~~r~~--~~~~~~~---~~IYv~G 470 (557)
T PHA02713 435 IRYDTVNNIWETLPNFWTGTIR--PGVVSHK---DDIYVVC 470 (557)
T ss_pred EEECCCCCeEeecCCCCccccc--CcEEEEC---CEEEEEe
Confidence 8899999986554 35444433 3444443 6899984
No 427
>KOG0613|consensus
Probab=71.45 E-value=4.2 Score=52.12 Aligned_cols=148 Identities=12% Similarity=0.013 Sum_probs=90.8
Q ss_pred cEEEEcCCeEEEEEecCCCCCCc-eEEecCCCcccccCC---ccceeccCCcEEEEeeeeecCceeEEeecC--------
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPS-IIWKTSENKPITLGS---WKDSAVASSTLNFTRINRINMGAYMCLADN-------- 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~-v~W~k~~~~~~~~~~---~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N-------- 367 (902)
.+.+..+..+++.|...+.+.+. +.|++.......... ..........+.|..+...+.+.|.|.|.|
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~ 422 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTI 422 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccccc
Confidence 46677788999999999988887 999986544322211 111222345799999999999999999999
Q ss_pred -----------CCCEEEEcCceeeeecC--ceEEEEEEeeccCCc--eEEEEecCCeeeecCCceEEEeecCCCceeeEe
Q psy12803 368 -----------VPPQILIRNRRVGVPIG--RTATLECEVEAFPLS--VRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM 432 (902)
Q Consensus 368 -----------~~P~i~~~p~~~~v~~G--~~v~L~C~a~g~P~P--~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~s 432 (902)
..+.............+ +.+.+.|...+.+.+ .++|++..... .......... ...
T Consensus 423 ~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~---s~~s~~l~r~------~~t 493 (1205)
T KOG0613|consen 423 AESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPL---SDRSVTLTRD------VLT 493 (1205)
T ss_pred chhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccc---cccccccccc------chh
Confidence 11111111222222333 778899998888855 44454443322 1221111111 123
Q ss_pred EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 433 QLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 433 tL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
+|.+......|.+.|.-...-..+
T Consensus 494 slLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 494 SLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred hheeeccCCCccchhhhhhhccCC
Confidence 477888888999998665544433
No 428
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=70.88 E-value=16 Score=33.29 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=50.1
Q ss_pred eEEEEEE-eeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12803 386 TATLECE-VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464 (902)
Q Consensus 386 ~v~L~C~-a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L 464 (902)
.+.-.|. +.|.|++.|+|.-+ +. ...........+++....|.+.+......|.-.-+|+++....+-..++.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~---l~--G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTR---LK--GEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEcc---CC--CceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 3556787 57999999999632 11 111233344556667778888888888888889999998865544455554
Q ss_pred E
Q psy12803 465 F 465 (902)
Q Consensus 465 ~ 465 (902)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 3
No 429
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=68.44 E-value=11 Score=34.08 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=38.1
Q ss_pred CCcEEEEcCCeEEEEEecCCC-----CCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEe
Q psy12803 298 SSPIVVREGDNVRLRCVATGH-----PKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364 (902)
Q Consensus 298 ~~~v~v~eGe~v~L~C~a~G~-----P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~ 364 (902)
++...+..|++|+..|..... ....|.|..++. .++....+......++++|.+.....+-.|.|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KIPGSQYRVINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ESTCGCEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-ECChhHcceeCCeEEEEEEccCCCCCceEEEEE
Confidence 344568899999999998742 456799988665 555444333323334566666555544456665
No 430
>PHA03098 kelch-like protein; Provisional
Probab=67.86 E-value=57 Score=39.09 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=86.8
Q ss_pred CceEEEecCCCC----CceEeecChhhhcccCCcceEeCcCCCCCcceEEEcCeEEEeec------CCccEEEEEcCCcc
Q psy12803 594 SEKFWMTTDSDP----THLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKK------FSNSIVQFDLGSSK 663 (902)
Q Consensus 594 ~~~~~~~~~~~~----~~~~ey~~~~~~~~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~------~s~~ivkydl~~~~ 663 (902)
.+++|+..+..+ +.++.| ++..+.|...-.+|.+-.+...++++|.||---. ..+.+.+||+.+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~y----d~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESW----KPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEE----cCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 456777766542 233444 2344555555567777778888999999998522 23679999999886
Q ss_pred EEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCc----EEEEeeCCCCcceeEEEEec--cc-cccccce
Q psy12803 664 IINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNN----TAVTKLDTATLQIQYTWNIT--LL-HKKVGDM 735 (902)
Q Consensus 664 ~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~----ivvskld~~~l~v~~tw~t~--~~-k~~~~na 735 (902)
-.....++. . .+ ++. .++..+-|+|+=+.. .+. -.+-..|+.+ ++|..- .+ .+....+
T Consensus 418 W~~~~~~p~--~---r~--~~~---~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 418 WSKGSPLPI--S---HY--GGC---AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT----NKWTELSSLNFPRINASL 483 (534)
T ss_pred eeecCCCCc--c---cc--Cce---EEEECCEEEEECCccCCCCCcccceEEEecCCC----CceeeCCCCCcccccceE
Confidence 543333331 1 11 111 234445555553322 111 1255566654 456542 11 2233345
Q ss_pred EEEecEEEEEeecCCCc-ceEEEEEeCCCCceee
Q psy12803 736 FVVCGVLYVVDSVTDRN-TNIRFALDLYKNDLLE 768 (902)
Q Consensus 736 FmvCGvLY~~~s~~~~~-~~I~y~~Dt~~~~~~~ 768 (902)
.++-|.||++-..+... ..-.+.||..+++-..
T Consensus 484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 56678999997543221 3456788888876543
No 431
>KOG1026|consensus
Probab=67.47 E-value=8.3 Score=47.57 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=84.6
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeecC----CCCEE---
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN----VPPQI--- 372 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N----~~P~i--- 372 (902)
...+..|..+++.|.+.+.|.|.+.|+................ . .+.....+ ++|.+.| .-+.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c-~--~~~~~~~~------~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC-R--SECEVLEN------DLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccc-c--ccceeeec------hhhHHHHhhhhcCceeeeE
Confidence 3567889999999999999999999998765533221111111 1 11111221 8899988 11111
Q ss_pred -EEcCceeeeecCceEEEEEEe---eccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEE
Q psy12803 373 -LIRNRRVGVPIGRTATLECEV---EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYR 448 (902)
Q Consensus 373 -~~~p~~~~v~~G~~v~L~C~a---~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~Yt 448 (902)
...........-..-.-.|.. .+.|.+...|.+++..+........+..... . -+....-+..+.|.|+
T Consensus 272 ~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~-~------C~~~~~~~h~~~~~~~ 344 (774)
T KOG1026|consen 272 VDLPKAEVLLCSPLSDHHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKE-Q------CLPWNDPPHSHNGNYT 344 (774)
T ss_pred EecccccccCCCCccccCceeeeeccCCCCCceeeeecCccceEecccccccccCc-C------CcccCcCcccccCcce
Confidence 111111100101111233433 3567778889887765432221111111110 1 1444444678899999
Q ss_pred EEEEeCCceeEEEEEEEeecCC
Q psy12803 449 CISKNEVDIAKGSLILFESNAK 470 (902)
Q Consensus 449 C~A~N~~G~~~~s~~L~V~~~p 470 (902)
|.+.|..|.........+...|
T Consensus 345 ~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 345 LFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeecccCccccccCcCccccCC
Confidence 9999999887766666555544
No 432
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=66.46 E-value=87 Score=35.90 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=45.1
Q ss_pred CeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCccee
Q psy12803 642 NSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQ 720 (902)
Q Consensus 642 g~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~ 720 (902)
|...|-......|.++||.+++++++...- ..-..+|+...|-|++=+.. .+.++| ||.+||++.
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G------------~~~~~i~~s~DG~~~~v~n~~~~~v~v--~D~~tle~v 113 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG------------GNPRGIAVSPDGKYVYVANYEPGTVSV--IDAETLEPV 113 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S------------SEEEEEEE--TTTEEEEEEEETTEEEE--EETTT--EE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC------------CCcceEEEcCCCCEEEEEecCCCceeE--eccccccce
Confidence 555555555569999999999987665432 23466777777888753332 555555 999999999
Q ss_pred EEEEec
Q psy12803 721 YTWNIT 726 (902)
Q Consensus 721 ~tw~t~ 726 (902)
++..|.
T Consensus 114 ~~I~~~ 119 (369)
T PF02239_consen 114 KTIPTG 119 (369)
T ss_dssp EEEE--
T ss_pred eecccc
Confidence 998876
No 433
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=66.36 E-value=1.7e+02 Score=30.33 Aligned_cols=159 Identities=20% Similarity=0.327 Sum_probs=87.1
Q ss_pred ceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC
Q psy12803 624 WTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS 703 (902)
Q Consensus 624 ~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~ 703 (902)
..+.++....+. .++.++.+|.... ...|+.+|+.+.++.-.......... .......++++ |-.++.+..
T Consensus 60 W~~~~~~~~~~~-~~~~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~ 130 (238)
T PF13360_consen 60 WRFDLPGPISGA-PVVDGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSPPA-----GVRSSSSPAVD--GDRLYVGTS 130 (238)
T ss_dssp EEEECSSCGGSG-EEEETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSCTC-----STB--SEEEEE--TTEEEEEET
T ss_pred EEeeccccccce-eeecccccccccc-eeeeEecccCCcceeeeecccccccc-----ccccccCceEe--cCEEEEEec
Confidence 344444333333 4778888887753 33999999999988543222211110 12334455555 434444444
Q ss_pred CCcEEEEeeCCCCcceeEEEEecccccc-----------ccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeee
Q psy12803 704 NNNTAVTKLDTATLQIQYTWNITLLHKK-----------VGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLN 772 (902)
Q Consensus 704 ~~~ivvskld~~~l~v~~tw~t~~~k~~-----------~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~ 772 (902)
++++ ..||+.+=++ .|+....... .+..++.=|.+|+..... + .+++|+.+++..
T Consensus 131 ~g~l--~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----~-~~~~d~~tg~~~----- 196 (238)
T PF13360_consen 131 SGKL--VALDPKTGKL--LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG----R-VVAVDLATGEKL----- 196 (238)
T ss_dssp CSEE--EEEETTTTEE--EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS----S-EEEEETTTTEEE-----
T ss_pred cCcE--EEEecCCCcE--EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC----e-EEEEECCCCCEE-----
Confidence 4444 4466666554 3444442222 244555557888876522 2 456699998832
Q ss_pred ecCCCCCceeeecCCCCCeEEEEe-CCeEEEEEeE
Q psy12803 773 FTNPFTNTTMITYNSRYKDLYTWD-RGNSLTYPIR 806 (902)
Q Consensus 773 f~~~~~~~~~l~YnP~d~~LY~wd-~g~~~~Y~v~ 806 (902)
|.+....... .-...+..||+=+ +|+++.++++
T Consensus 197 w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 197 WSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEECSS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred EEecCCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence 3222222222 1347788899887 8998888864
No 434
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=65.59 E-value=2e+02 Score=32.93 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEeccc
Q psy12803 650 FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLL 728 (902)
Q Consensus 650 ~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~ 728 (902)
+...|..+|+.++.......+.. . . ..++...+|-+++|+.. +++..|-.+|..+-...+. +...
T Consensus 212 ~~~~i~v~d~~~g~~~~~~~~~~---~-------~--~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l--~~~~ 277 (417)
T TIGR02800 212 GKPEIYVQDLATGQREKVASFPG---M-------N--GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL--TNGP 277 (417)
T ss_pred CCcEEEEEECCCCCEEEeecCCC---C-------c--cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC--CCCC
Confidence 34689999999876543322221 0 1 11344555666666654 3333333333333221111 1111
Q ss_pred cccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEeC
Q psy12803 729 HKKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDR 797 (902)
Q Consensus 729 k~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd~ 797 (902)
......+|.-.|- |+.+.. ...... -|.+|+.+++... |.+. ......+..+|..+.|++=++
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~-~~g~~~-iy~~d~~~~~~~~--l~~~--~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSD-RGGSPQ-IYMMDADGGEVRR--LTFR--GGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred CCCCCEEECCCCCEEEEEEC-CCCCce-EEEEECCCCCEEE--eecC--CCCccCeEECCCCCEEEEEEc
Confidence 1112335555563 333322 112223 4678887766433 3333 245567788898877665443
No 435
>KOG1984|consensus
Probab=64.18 E-value=1.4e+02 Score=37.47 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=7.7
Q ss_pred CCeEEEEeCCeEE
Q psy12803 789 YKDLYTWDRGNSL 801 (902)
Q Consensus 789 d~~LY~wd~g~~~ 801 (902)
+..+|+-+||--+
T Consensus 890 negiYll~nG~~~ 902 (1007)
T KOG1984|consen 890 NEGIYLLDNGQKI 902 (1007)
T ss_pred CCceEEEecCcEE
Confidence 4556777766443
No 436
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=64.09 E-value=4.8 Score=27.17 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=13.8
Q ss_pred eeecCCCCCeEEEEeC
Q psy12803 782 MITYNSRYKDLYTWDR 797 (902)
Q Consensus 782 ~l~YnP~d~~LY~wd~ 797 (902)
-++-||.||.+|-||=
T Consensus 7 i~h~~psdksi~hwdf 22 (28)
T PRK14751 7 VMHKNPSDKSIYHWDF 22 (28)
T ss_pred eeecCCCcCceeeeee
Confidence 3678999999999983
No 437
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=62.45 E-value=2.3e+02 Score=30.64 Aligned_cols=152 Identities=13% Similarity=0.214 Sum_probs=82.3
Q ss_pred eEEEc---CeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeC
Q psy12803 637 HVVFN---NSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLD 713 (902)
Q Consensus 637 ~vvyn---g~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld 713 (902)
-+.|| ++||-.-.....|+.||++ ..+..+..+.. ..-+=+++.-.+|.+||=....+.+++-+++
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g----------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG----------FGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-----------SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC----------CCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34554 7788888888899999986 55656666553 1234567777889999833337788888885
Q ss_pred CCC--ccee--EEEEecccc-ccc---cceEEE-ecEEEEEeecCCCcceEEEEEeCCCC--c-eeeeeeee---cCCCC
Q psy12803 714 TAT--LQIQ--YTWNITLLH-KKV---GDMFVV-CGVLYVVDSVTDRNTNIRFALDLYKN--D-LLEVSLNF---TNPFT 778 (902)
Q Consensus 714 ~~~--l~v~--~tw~t~~~k-~~~---~naFmv-CGvLY~~~s~~~~~~~I~y~~Dt~~~--~-~~~~~i~f---~~~~~ 778 (902)
..+ +.+. ++..+.+.+ .+. +=|+-. -+-||+++- ++..--|.++.... . .......+ .....
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeeccccccccccceec
Confidence 544 5443 455555552 211 114433 266777753 45556677775221 1 11111122 23445
Q ss_pred CceeeecCCCCCeEEEEeCCeEEE
Q psy12803 779 NTTMITYNSRYKDLYTWDRGNSLT 802 (902)
Q Consensus 779 ~~~~l~YnP~d~~LY~wd~g~~~~ 802 (902)
.++.|+|+|++.+||+=.+-..+.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l 195 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLL 195 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEE
T ss_pred cccceEEcCCCCeEEEEECCCCeE
Confidence 689999999999999998855444
No 438
>KOG1026|consensus
Probab=62.42 E-value=3.4 Score=50.81 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=92.9
Q ss_pred cEEEEcCCeEEEEEecCCCCCCceEEecCCCcccccCC--ccceeccCCcEEEEeeeeecCceeEEeecC----------
Q psy12803 300 PIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS--WKDSAVASSTLNFTRINRINMGAYMCLADN---------- 367 (902)
Q Consensus 300 ~v~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~--~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~N---------- 367 (902)
+++...+++..+.|.+..++...+.|.++.......-. .......+..|.+.+....+.|.+.|.+.+
T Consensus 61 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 140 (774)
T KOG1026|consen 61 NITEIFIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTEL 140 (774)
T ss_pred hHHHHHHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchh
Confidence 45566789999999999977778999886654332111 111112223366666666677777766655
Q ss_pred -----------------------------------CCCEEEE---------------cCceeeeecCceEEEEEEeeccC
Q psy12803 368 -----------------------------------VPPQILI---------------RNRRVGVPIGRTATLECEVEAFP 397 (902)
Q Consensus 368 -----------------------------------~~P~i~~---------------~p~~~~v~~G~~v~L~C~a~g~P 397 (902)
+...... ......+..+..+++.|.+.+.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~ 220 (774)
T KOG1026|consen 141 SLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGIP 220 (774)
T ss_pred hhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeecccCC
Confidence 0000000 01124566789999999999999
Q ss_pred CceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEEeecCC
Q psy12803 398 LSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILFESNAK 470 (902)
Q Consensus 398 ~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~V~~~p 470 (902)
.|.+.|+............+ .+.. . -...+.+ ++|.+.|..+....++.+.+.-+.
T Consensus 221 vp~~~~~~~~~~~~~~~~~~-~~c~-~-------~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p~ 276 (774)
T KOG1026|consen 221 VPCHYWFPNCLASSNTNQTS-SLCR-S-------ECEVLEN--------DLCIAENAVARSNPSILLVVDLPK 276 (774)
T ss_pred CcceeeecccccccCCCccc-cccc-c-------cceeeec--------hhhHHHHhhhhcCceeeeEEeccc
Confidence 99999987665543211111 1110 0 0012221 899999999998888777776553
No 439
>PRK04792 tolB translocation protein TolB; Provisional
Probab=62.11 E-value=2.4e+02 Score=33.08 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=61.8
Q ss_pred CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEeccc
Q psy12803 650 FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLL 728 (902)
Q Consensus 650 ~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~ 728 (902)
+..+|..+|+.+........++.. . ..++....|-+++|+.. +++.-|-.+|.++=++++. |...
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~----------~--~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l--t~~~ 305 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGI----------N--GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI--TRHR 305 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCC----------c--CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC--ccCC
Confidence 345899999988765432222210 0 12344445556666543 3443333333333222211 0011
Q ss_pred cccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEeC
Q psy12803 729 HKKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDR 797 (902)
Q Consensus 729 k~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd~ 797 (902)
.....-+|.-.|- |+.+.. ..... =-|.+|+.+++...+ .|...+ .....+.|..+.||+-.+
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~-~~g~~-~Iy~~dl~~g~~~~L--t~~g~~--~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSE-RGGKP-QIYRVNLASGKVSRL--TFEGEQ--NLGGSITPDGRSMIMVNR 369 (448)
T ss_pred CCccceEECCCCCEEEEEEC-CCCCc-eEEEEECCCCCEEEE--ecCCCC--CcCeeECCCCCEEEEEEe
Confidence 1112234444442 333322 22222 347889888775544 354433 345788999998877543
No 440
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=61.99 E-value=17 Score=40.82 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.4
Q ss_pred eEEEEEecCC-CC-CCceEEecC
Q psy12803 308 NVRLRCVATG-HP-KPSIIWKTS 328 (902)
Q Consensus 308 ~v~L~C~a~G-~P-~p~v~W~k~ 328 (902)
.++|+|.|.| .| ...++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 44 456899998
No 441
>PRK04922 tolB translocation protein TolB; Provisional
Probab=59.53 E-value=2.8e+02 Score=32.25 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=61.7
Q ss_pred CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEecccc
Q psy12803 651 SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLLH 729 (902)
Q Consensus 651 s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~k 729 (902)
..+|..+|+.+++.......+. . ...++....|-+++|... +++..|-.+|..+=++.+. |....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g---~---------~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l--t~~~~ 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG---I---------NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL--TNHFG 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC---C---------ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC--ccCCC
Confidence 4579999998876533222221 0 123445556666666643 3432233333333222111 11111
Q ss_pred ccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 730 KKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 730 ~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
....-+|---|- |+.+.. .... .--|.+|+.+++... |.|.. .....+.++|..+.|++..
T Consensus 293 ~~~~~~~spDG~~l~f~sd-~~g~-~~iy~~dl~~g~~~~--lt~~g--~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSD-RGGR-PQIYRVAASGGSAER--LTFQG--NYNARASVSPDGKKIAMVH 354 (433)
T ss_pred CccceEECCCCCEEEEEEC-CCCC-ceEEEEECCCCCeEE--eecCC--CCccCEEECCCCCEEEEEE
Confidence 112335554453 333322 1112 234678888776444 33443 3345789999999998764
No 442
>PHA02713 hypothetical protein; Provisional
Probab=59.38 E-value=54 Score=39.76 Aligned_cols=157 Identities=12% Similarity=0.220 Sum_probs=92.9
Q ss_pred CceEEEecCCCCC----ceEeecChhhhcccCCcceEeCcCCCCCcceEEEcCeEEEeecC-------------------
Q psy12803 594 SEKFWMTTDSDPT----HLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKF------------------- 650 (902)
Q Consensus 594 ~~~~~~~~~~~~~----~~~ey~~~~~~~~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~~------------------- 650 (902)
.+++|+..+.++. .++.|+ ...+.|...-.||.+..+.+.++++|.||---..
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Yd----p~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYT----MGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEE----CCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 5688888776543 344443 2234555555688888899999999999974221
Q ss_pred ----CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCC-Cc--EEEEeeCCCCcceeEEE
Q psy12803 651 ----SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSN-NN--TAVTKLDTATLQIQYTW 723 (902)
Q Consensus 651 ----s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~-~~--ivvskld~~~l~v~~tw 723 (902)
.+.+-+||..+.+-.....++. .+. . .=.||=.+-++|+=+... .. -+|-..||++ ..+|
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~--~r~---~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~---~~~W 493 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWT--GTI---R-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT---YNGW 493 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCc--ccc---c-----CcEEEECCEEEEEeCCCCCCccceeEEEecCCC---CCCe
Confidence 3568899999986543333331 111 1 113444455565532221 11 2355667764 2368
Q ss_pred E--eccc-cccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeee
Q psy12803 724 N--ITLL-HKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEV 769 (902)
Q Consensus 724 ~--t~~~-k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~ 769 (902)
. ..++ ++....+=++=|.||++-..+.. .-.-.||..|++-..+
T Consensus 494 ~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 494 ELITTTESRLSALHTILHDNTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred eEccccCcccccceeEEECCEEEEEeeecce--eehhhcCcccccccch
Confidence 6 3344 34455666778999999875542 2345888888775543
No 443
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=56.86 E-value=2e+02 Score=32.80 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=63.7
Q ss_pred CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CC----cEEEEeeCCCCcceeEEEEe
Q psy12803 651 SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NN----NTAVTKLDTATLQIQYTWNI 725 (902)
Q Consensus 651 s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~----~ivvskld~~~l~v~~tw~t 725 (902)
++.+.+||..+.+-.....++.. . ....-+++.++-|+||=+.. .+ .+-+-++|+++ .+|..
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~-~--------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~----~~W~~ 254 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFL-G--------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNN----LKWQK 254 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCC-C--------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCC----cceee
Confidence 35799999999866433223310 0 11223566677777774321 11 11122344443 45864
Q ss_pred c--cccccc-------cc--eEEEecEEEEEeecCCCc------------------ceEEEEEeCCCCceeee-eeeecC
Q psy12803 726 T--LLHKKV-------GD--MFVVCGVLYVVDSVTDRN------------------TNIRFALDLYKNDLLEV-SLNFTN 775 (902)
Q Consensus 726 ~--~~k~~~-------~n--aFmvCGvLY~~~s~~~~~------------------~~I~y~~Dt~~~~~~~~-~i~f~~ 775 (902)
- ++.+.+ .. |-++-|.||++--.+... ......||+.+++-..+ .++.+.
T Consensus 255 ~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r 334 (376)
T PRK14131 255 LPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL 334 (376)
T ss_pred cCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc
Confidence 3 222111 11 345678999985432110 11245788888875443 344433
Q ss_pred CCCCceeeecCCCCCeEEEEe
Q psy12803 776 PFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 776 ~~~~~~~l~YnP~d~~LY~wd 796 (902)
.+++++.. +.+||+.-
T Consensus 335 --~~~~av~~---~~~iyv~G 350 (376)
T PRK14131 335 --AYGVSVSW---NNGVLLIG 350 (376)
T ss_pred --cceEEEEe---CCEEEEEc
Confidence 33344433 35677764
No 444
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=56.70 E-value=3.5e+02 Score=30.89 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=81.2
Q ss_pred CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEEEecccc
Q psy12803 650 FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLH 729 (902)
Q Consensus 650 ~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~~~k 729 (902)
.+..|--||+.+.+++.+..++. ..+ +..+..-..||+...|-|+.-+..+..-.|+-+|..+-.+..+..+.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~-~p~---~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--- 147 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPE-GPR---FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--- 147 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCC-Cch---hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC---
Confidence 46799999999999988887762 111 12333445677777777766555454566788999999999888882
Q ss_pred ccccceEEEecEEEEEeecC-----CCcceEEEEEeCCCCceeeeeee---------ecCCCCCceeeecCC-CCCeEEE
Q psy12803 730 KKVGDMFVVCGVLYVVDSVT-----DRNTNIRFALDLYKNDLLEVSLN---------FTNPFTNTTMITYNS-RYKDLYT 794 (902)
Q Consensus 730 ~~~~naFmvCGvLY~~~s~~-----~~~~~I~y~~Dt~~~~~~~~~i~---------f~~~~~~~~~l~YnP-~d~~LY~ 794 (902)
-|-.+|++.... ...+...+.+|.... ....++. |.++ -|.+ .++.||+
T Consensus 148 --------~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP-------~~~~~dg~~~~v 211 (352)
T TIGR02658 148 --------DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHP-------AYSNKSGRLVWP 211 (352)
T ss_pred --------CCcEEEEecCCccEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCC-------ceEcCCCcEEEE
Confidence 255555552111 112234445554433 1122222 3333 3455 6778888
Q ss_pred EeCCeEEEEE
Q psy12803 795 WDRGNSLTYP 804 (902)
Q Consensus 795 wd~g~~~~Y~ 804 (902)
=..|.+..-+
T Consensus 212 s~eG~V~~id 221 (352)
T TIGR02658 212 TYTGKIFQID 221 (352)
T ss_pred ecCCeEEEEe
Confidence 8888887777
No 445
>PRK05137 tolB translocation protein TolB; Provisional
Probab=56.48 E-value=3.2e+02 Score=31.73 Aligned_cols=128 Identities=12% Similarity=0.093 Sum_probs=60.9
Q ss_pred CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEeccc
Q psy12803 650 FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLL 728 (902)
Q Consensus 650 ~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~ 728 (902)
+...|..+|+.+.........+. . ...++..-.|-.++|+.. +++.-|-.+|..+=.+.+- |...
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g---~---------~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L--t~~~ 289 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPG---M---------TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL--TDSP 289 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCC---c---------ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEc--cCCC
Confidence 34689999998876543222221 0 012233344555555543 3333333333332221110 1111
Q ss_pred cccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 729 HKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 729 k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
.....-+|--.|-.-++.+.......| |.+|+.++....+ .+.. .......+.|..+.|++..
T Consensus 290 ~~~~~~~~spDG~~i~f~s~~~g~~~I-y~~d~~g~~~~~l--t~~~--~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 290 AIDTSPSYSPDGSQIVFESDRSGSPQL-YVMNADGSNPRRI--SFGG--GRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred CccCceeEcCCCCEEEEEECCCCCCeE-EEEECCCCCeEEe--ecCC--CcccCeEECCCCCEEEEEE
Confidence 112233555555322222212223344 8889887665443 3332 3456688999999998764
No 446
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.10 E-value=3.3e+02 Score=30.77 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=72.8
Q ss_pred EEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCc
Q psy12803 638 VVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATL 717 (902)
Q Consensus 638 vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l 717 (902)
++.++.+|.... ...+..||+++.++.=..... ....++++++-+++. +.++.+.. ||..+=
T Consensus 238 ~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~~~-------------~~~~p~~~~~~vyv~--~~~G~l~~--~d~~tG 299 (377)
T TIGR03300 238 VVDGGQVYAVSY-QGRVAALDLRSGRVLWKRDAS-------------SYQGPAVDDNRLYVT--DADGVVVA--LDRRSG 299 (377)
T ss_pred EEECCEEEEEEc-CCEEEEEECCCCcEEEeeccC-------------CccCceEeCCEEEEE--CCCCeEEE--EECCCC
Confidence 456777777543 457999999988764222211 123455666544433 33455443 344333
Q ss_pred ceeEEEEe-ccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEE-
Q psy12803 718 QIQYTWNI-TLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTW- 795 (902)
Q Consensus 718 ~v~~tw~t-~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~w- 795 (902)
+ ..|+. .+.........++=+.||+... +. .-|++|..+++... .+.+....-..+.+- -+++||+=
T Consensus 300 ~--~~W~~~~~~~~~~ssp~i~g~~l~~~~~----~G-~l~~~d~~tG~~~~-~~~~~~~~~~~sp~~---~~~~l~v~~ 368 (377)
T TIGR03300 300 S--ELWKNDELKYRQLTAPAVVGGYLVVGDF----EG-YLHWLSREDGSFVA-RLKTDGSGIASPPVV---VGDGLLVQT 368 (377)
T ss_pred c--EEEccccccCCccccCEEECCEEEEEeC----CC-EEEEEECCCCCEEE-EEEcCCCccccCCEE---ECCEEEEEe
Confidence 2 34776 3444445555667778888753 22 46789998887653 222222111222222 23567754
Q ss_pred eCCeEEE
Q psy12803 796 DRGNSLT 802 (902)
Q Consensus 796 d~g~~~~ 802 (902)
+||+++.
T Consensus 369 ~dG~l~~ 375 (377)
T TIGR03300 369 RDGDLYA 375 (377)
T ss_pred CCceEEE
Confidence 5666654
No 447
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=55.60 E-value=4.1e+02 Score=35.12 Aligned_cols=164 Identities=14% Similarity=0.117 Sum_probs=83.2
Q ss_pred ceEE--EcCeEEEeecCCccEEEEEcCCccEEEEEecC-CCCCCccccc-CCcccEEEEecCCccEEEEEcCCCcEEEEe
Q psy12803 636 AHVV--FNNSFYYHKKFSNSIVQFDLGSSKIINIVNLS-TVDPNIKLYK-TGYNVMDFSLDENGLWVIYGLSNNNTAVTK 711 (902)
Q Consensus 636 g~vv--yng~lYy~~~~s~~ivkydl~~~~~~~~~~~~-~~~~~~~~y~-~~~~~iD~avDE~GLWviY~~~~~~ivvsk 711 (902)
|.+| -+|.||.--.+.+.|.+||+....+....... .......+-. .-..-..+|+|.+|-.+ |-+..+|-.|.+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L-YVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL-YVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE-EEEeCCCceEEE
Confidence 4444 36889999888889999999876543221100 0000000000 11233678998765433 333333345677
Q ss_pred eCCCCcceeEEEEecc----------------ccccccceEEE-ecEEEEEeecCCCcceEEEEEeCCCCceeeee----
Q psy12803 712 LDTATLQIQYTWNITL----------------LHKKVGDMFVV-CGVLYVVDSVTDRNTNIRFALDLYKNDLLEVS---- 770 (902)
Q Consensus 712 ld~~~l~v~~tw~t~~----------------~k~~~~naFmv-CGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~---- 770 (902)
+|..+-.|..---+.. +.+ .+=||=- -|.||+.++.+ .. -+.||..++.-....
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P-~gVa~dp~~g~LyVad~~~---~~-I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSP-WDVCFEPVNEKVYIAMAGQ---HQ-IWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCC-eEEEEecCCCeEEEEECCC---Ce-EEEEECCCCeEEEEecCCc
Confidence 7766533322111110 011 1112222 57899987632 23 356777665432110
Q ss_pred -------eeecCCCCCceeeecCCCCCeEEEEeCC--eEEEEEe
Q psy12803 771 -------LNFTNPFTNTTMITYNSRYKDLYTWDRG--NSLTYPI 805 (902)
Q Consensus 771 -------i~f~~~~~~~~~l~YnP~d~~LY~wd~g--~~~~Y~v 805 (902)
......+..-..|.++|..+.||+=|.+ .+..|++
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL 769 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 0011123344568899998889987754 5555554
No 448
>PRK00178 tolB translocation protein TolB; Provisional
Probab=55.39 E-value=3.4e+02 Score=31.37 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=59.4
Q ss_pred CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEecccc
Q psy12803 651 SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLLH 729 (902)
Q Consensus 651 s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~k 729 (902)
...|..+|+.+.+......... . .. .++...+|-+++|... +++.-|-.+|..+=.+.+- |....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g---~-------~~--~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~ 287 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG---L-------NG--APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV--TNHPA 287 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC---C-------cC--CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc--ccCCC
Confidence 3589999999876543222111 0 11 2333444556666543 3332222333333222111 11111
Q ss_pred ccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 730 KKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 730 ~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
....-+|.--|- ||.+.. ......| |.+|+.+++...+ .|.. .+.+...+.|..+.||+-.
T Consensus 288 ~~~~~~~spDg~~i~f~s~-~~g~~~i-y~~d~~~g~~~~l--t~~~--~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 288 IDTEPFWGKDGRTLYFTSD-RGGKPQI-YKVNVNGGRAERV--TFVG--NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred CcCCeEECCCCCEEEEEEC-CCCCceE-EEEECCCCCEEEe--ecCC--CCccceEECCCCCEEEEEE
Confidence 112223443442 333321 2223344 7789888775444 3333 3445678889999887765
No 449
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=55.01 E-value=1.7e+02 Score=32.80 Aligned_cols=203 Identities=15% Similarity=0.233 Sum_probs=82.2
Q ss_pred CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEE--cC------CCcEEEEeeCCCCcceeEE
Q psy12803 651 SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYG--LS------NNNTAVTKLDTATLQIQYT 722 (902)
Q Consensus 651 s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~--~~------~~~ivvskld~~~l~v~~t 722 (902)
++.|..|||.+.+++.+..+...-.+. .. ... -+.......|++=. .. ..--++.|++-..... ..
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~ekeGpng-i~-~~~---~~~~~~Dsi~l~~~~~~~~l~~~n~~G~~~~~~~~~~~~~-~~ 139 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKEGPNG-IG-RPF---GFFQNLDSIFLFNSYAFPKLFLFNSQGEVLKKIDLEEEDL-EF 139 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSSSTTB--T-T------EEESSSTTSEEEEGGGTEEEEE-TT--EEEEEE---TTS---
T ss_pred cceEEEEECCCCceeeeeeeeeECCCC-cc-ccc---cceEcCCceEEEecCCcceEEEEcCCCeEEEEEecccCcc-cc
Confidence 579999999999998887776311111 10 011 11133334455422 11 1223444444443332 33
Q ss_pred EEeccccccccceEEEecEEEEEee-------cCCCcceEEEEEeCCCCceeeeeeeecCCCCC---------ceeeecC
Q psy12803 723 WNITLLHKKVGDMFVVCGVLYVVDS-------VTDRNTNIRFALDLYKNDLLEVSLNFTNPFTN---------TTMITYN 786 (902)
Q Consensus 723 w~t~~~k~~~~naFmvCGvLY~~~s-------~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~---------~~~l~Yn 786 (902)
|...+......-+|+-=+.+|.... .......+.+.+|+.+++...+.|+++..+.. .....|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (333)
T PF13970_consen 140 EPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVKWLPLPYPDKYQKYNINWDGGMFPSYSYN 219 (333)
T ss_dssp -----BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EEEEEEE--S------SSEEE---EEEEEE
T ss_pred cccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEEEEeCCChHHhhhhccccCcceecceeEE
Confidence 4333333223334666666676543 12234569999999999998888877776654 3344444
Q ss_pred --CCCCeEEEEeCCe-EEEEEeEEeeecccCCCCCCcCCCCccccccCCCCCCCCcCC------ccc-ceEEEeeeeeee
Q psy12803 787 --SRYKDLYTWDRGN-SLTYPIRYHEIDSYNLNKQEKTDADMTTGVDITPTQPPLIPD------STY-SFIRLTFQDLYT 856 (902)
Q Consensus 787 --P~d~~LY~wd~g~-~~~Y~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~ 856 (902)
..++-||.+.--+ +..|+ .......+...+.. ++...+.+-.+ .+. .+-.+.|..|+
T Consensus 220 ~~~~~~~i~s~~~~~~iyv~d-~~~~~~~~~~~S~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~l~- 286 (333)
T PF13970_consen 220 YFKGGKIIISFPADSEIYVYD-SNDSLKKYSAKSRY-----------IDNKSPKLDNSEEDFEEWFKHYIEQPNYGPLL- 286 (333)
T ss_dssp T-TTTEEEEEETT-SEEEEES-SSS-EEEEE---TT-----------S-------EEGGGGHHHHHH-HHHS-EEEEEE-
T ss_pred EeeCCEEEEecCCCceEEEEC-CCCeEEEEeCCccc-----------cCCcCcccCCchhhHHHHHHHhhcccccccee-
Confidence 2333333332222 22222 21121111111111 11111111111 111 24456777775
Q ss_pred ecCCCceeeeeeEeee
Q psy12803 857 WDRGNSLTYPIRYHEI 872 (902)
Q Consensus 857 ~~~~~~~~~~~~~~~~ 872 (902)
||+=+.+-|=+-||.+
T Consensus 287 yD~~r~vYyRf~~~~~ 302 (333)
T PF13970_consen 287 YDKYRKVYYRFAYPPI 302 (333)
T ss_dssp EETTTTEEEEEEE---
T ss_pred EcchhCEEEEEeeccc
Confidence 9999999999999877
No 450
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=54.72 E-value=3.8e+02 Score=30.66 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=76.4
Q ss_pred eEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCC
Q psy12803 637 HVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTAT 716 (902)
Q Consensus 637 ~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~ 716 (902)
-++.++.+|... ....|+-||+++.++.=+..... ........+.. +++... |+.++.++.+.. ||.++
T Consensus 156 P~v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~--~~~~~~~~~sP----~v~~~~--v~~~~~~g~v~a--~d~~~ 224 (394)
T PRK11138 156 PVVSDGLVLVHT-SNGMLQALNESDGAVKWTVNLDV--PSLTLRGESAP----ATAFGG--AIVGGDNGRVSA--VLMEQ 224 (394)
T ss_pred CEEECCEEEEEC-CCCEEEEEEccCCCEeeeecCCC--CcccccCCCCC----EEECCE--EEEEcCCCEEEE--EEccC
Confidence 367788888763 23479999999998853333221 10000001111 222222 444444554432 44444
Q ss_pred cceeEEEEecccccc-----------ccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeec
Q psy12803 717 LQIQYTWNITLLHKK-----------VGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITY 785 (902)
Q Consensus 717 l~v~~tw~t~~~k~~-----------~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~Y 785 (902)
=+ ..|...+.... .....+.-|.||++.. + ...|++|..+++.. |...+.....+-
T Consensus 225 G~--~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----~-g~l~ald~~tG~~~-----W~~~~~~~~~~~- 291 (394)
T PRK11138 225 GQ--LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----N-GNLVALDLRSGQIV-----WKREYGSVNDFA- 291 (394)
T ss_pred Ch--hhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----C-CeEEEEECCCCCEE-----EeecCCCccCcE-
Confidence 22 24655432221 1334577899999763 2 35799999998643 333333222121
Q ss_pred CCCCCeEEEEe-CCeEEEEEeE
Q psy12803 786 NSRYKDLYTWD-RGNSLTYPIR 806 (902)
Q Consensus 786 nP~d~~LY~wd-~g~~~~Y~v~ 806 (902)
..+..||+-+ +|+++..+..
T Consensus 292 -~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 292 -VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred -EECCEEEEEcCCCeEEEEECC
Confidence 2367888876 6777777664
No 451
>PRK04792 tolB translocation protein TolB; Provisional
Probab=52.88 E-value=3.5e+02 Score=31.77 Aligned_cols=136 Identities=12% Similarity=0.119 Sum_probs=67.8
Q ss_pred cCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeE-EEEec
Q psy12803 649 KFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQY-TWNIT 726 (902)
Q Consensus 649 ~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~-tw~t~ 726 (902)
.+..+|..+|+.++.+....... . ..+...| .-.|-|++|.+. .++..|-.+|..+-++++ +++..
T Consensus 283 ~g~~~Iy~~dl~tg~~~~lt~~~---~-------~~~~p~w--SpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 283 DGQPEIYVVDIATKALTRITRHR---A-------IDTEPSW--HPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred CCCeEEEEEECCCCCeEECccCC---C-------CccceEE--CCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 34458999999988764321110 0 0122333 345778888765 445555555554433332 22211
Q ss_pred cccccccceEEEec-EEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEE--EeCCeEEEE
Q psy12803 727 LLHKKVGDMFVVCG-VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYT--WDRGNSLTY 803 (902)
Q Consensus 727 ~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~--wd~g~~~~Y 803 (902)
+ ...-+|---| .||.+.. ......| |.+|+.+++...+.- . ......++.|..+.|+. .++|....|
T Consensus 351 ~---~~~~~~SpDG~~l~~~~~-~~g~~~I-~~~dl~~g~~~~lt~---~--~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 351 Q---NLGGSITPDGRSMIMVNR-TNGKFNI-ARQDLETGAMQVLTS---T--RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred C---CcCeeECCCCCEEEEEEe-cCCceEE-EEEECCCCCeEEccC---C--CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 1 1233555555 3333332 2222233 778988876544321 1 11224578898887754 344555555
Q ss_pred EeE
Q psy12803 804 PIR 806 (902)
Q Consensus 804 ~v~ 806 (902)
-+.
T Consensus 421 ~~~ 423 (448)
T PRK04792 421 AVS 423 (448)
T ss_pred EEE
Confidence 443
No 452
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.68 E-value=4e+02 Score=30.47 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=76.0
Q ss_pred eEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCC
Q psy12803 637 HVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTAT 716 (902)
Q Consensus 637 ~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~ 716 (902)
-+++++.+|.... ...+..+|+++.++.=...+. +..+++++.+-|++. +.++.+. -||..+
T Consensus 252 P~v~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~-------------~~~~~~~~~~~vy~~--~~~g~l~--ald~~t 313 (394)
T PRK11138 252 PVVVGGVVYALAY-NGNLVALDLRSGQIVWKREYG-------------SVNDFAVDGGRIYLV--DQNDRVY--ALDTRG 313 (394)
T ss_pred cEEECCEEEEEEc-CCeEEEEECCCCCEEEeecCC-------------CccCcEEECCEEEEE--cCCCeEE--EEECCC
Confidence 3577888887543 358999999998774222221 012356665533332 3345443 345544
Q ss_pred cceeEEEEecc-ccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCcee-eeeeeecCCCCCceeeecCCCCCeEEE
Q psy12803 717 LQIQYTWNITL-LHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLL-EVSLNFTNPFTNTTMITYNSRYKDLYT 794 (902)
Q Consensus 717 l~v~~tw~t~~-~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~-~~~i~f~~~~~~~~~l~YnP~d~~LY~ 794 (902)
= +..|+... .........++=|.||+... +. .-|++|..+++.. ..++. .. ...++.-+ -+++||+
T Consensus 314 G--~~~W~~~~~~~~~~~sp~v~~g~l~v~~~----~G-~l~~ld~~tG~~~~~~~~~--~~-~~~s~P~~--~~~~l~v 381 (394)
T PRK11138 314 G--VELWSQSDLLHRLLTAPVLYNGYLVVGDS----EG-YLHWINREDGRFVAQQKVD--SS-GFLSEPVV--ADDKLLI 381 (394)
T ss_pred C--cEEEcccccCCCcccCCEEECCEEEEEeC----CC-EEEEEECCCCCEEEEEEcC--CC-cceeCCEE--ECCEEEE
Confidence 3 35787653 33445556678899998754 33 4567999998754 23331 11 11221111 3678998
Q ss_pred E-eCCeEEEE
Q psy12803 795 W-DRGNSLTY 803 (902)
Q Consensus 795 w-d~g~~~~Y 803 (902)
- ++|++...
T Consensus 382 ~t~~G~l~~~ 391 (394)
T PRK11138 382 QARDGTVYAI 391 (394)
T ss_pred EeCCceEEEE
Confidence 7 44565543
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.36 E-value=42 Score=36.58 Aligned_cols=91 Identities=15% Similarity=0.341 Sum_probs=63.7
Q ss_pred cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCC-ccEEEEEcCCCcEEEEeeCCCCcce
Q psy12803 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDEN-GLWVIYGLSNNNTAVTKLDTATLQI 719 (902)
Q Consensus 641 ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~-GLWviY~~~~~~ivvskld~~~l~v 719 (902)
+|+++|+-..+..|=+.|-+|.++. +..|.. + ..-.=+-+++. ++|+. +.-..|-+||+++|++
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~-~ypLg~--G--------a~Phgiv~gpdg~~Wit----d~~~aI~R~dpkt~ev 136 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVE-TYPLGS--G--------ASPHGIVVGPDGSAWIT----DTGLAIGRLDPKTLEV 136 (353)
T ss_pred CCceEEecCccccceecCCCCCceE-EEecCC--C--------CCCceEEECCCCCeeEe----cCcceeEEecCcccce
Confidence 6899999999999999999999885 344432 1 12233456665 68987 3334999999999997
Q ss_pred eEEEEecccccc---ccceEEEecEEEEEee
Q psy12803 720 QYTWNITLLHKK---VGDMFVVCGVLYVVDS 747 (902)
Q Consensus 720 ~~tw~t~~~k~~---~~naFmvCGvLY~~~s 747 (902)
+ +|.....+.. -...|==-|.|..|-.
T Consensus 137 t-~f~lp~~~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 137 T-RFPLPLEHADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred E-EeecccccCCCcccceeeCCCccEEEeec
Confidence 5 5666654432 2235667788888865
No 454
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=51.57 E-value=3.1e+02 Score=30.65 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=62.9
Q ss_pred ccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcE-----EEEeeCCCCcceeEEEEec
Q psy12803 652 NSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNT-----AVTKLDTATLQIQYTWNIT 726 (902)
Q Consensus 652 ~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~i-----vvskld~~~l~v~~tw~t~ 726 (902)
+.+-+||..+.+-.....++.. .+ ...=+++-++-|+|+=+.....+ -+-.+|++ ..+|..-
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~-~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~----~~~W~~~ 234 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFL-GT--------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG----KLEWNKL 234 (346)
T ss_pred ceEEEEECCCCceeECccCCCC-cC--------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCC----Cceeeec
Confidence 5789999998865443333310 00 11224555667777755421111 11122333 2467643
Q ss_pred --cccc------c-cc-ceEEEecEEEEEeecCCC------------------cceEEEEEeCCCCceee-eeeeecCCC
Q psy12803 727 --LLHK------K-VG-DMFVVCGVLYVVDSVTDR------------------NTNIRFALDLYKNDLLE-VSLNFTNPF 777 (902)
Q Consensus 727 --~~k~------~-~~-naFmvCGvLY~~~s~~~~------------------~~~I~y~~Dt~~~~~~~-~~i~f~~~~ 777 (902)
++.+ . ++ .|.++-|.||++--.+.. ...-...||..+++-.. ..++.+.
T Consensus 235 ~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~-- 312 (346)
T TIGR03547 235 PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL-- 312 (346)
T ss_pred CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--
Confidence 2211 1 11 256788999998553210 00124567777776443 3344433
Q ss_pred CCceeeecCCCCCeEEEEe
Q psy12803 778 TNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 778 ~~~~~l~YnP~d~~LY~wd 796 (902)
...+++ ..+.+||++-
T Consensus 313 ~~~~~~---~~~~~iyv~G 328 (346)
T TIGR03547 313 AYGVSV---SWNNGVLLIG 328 (346)
T ss_pred eeeEEE---EcCCEEEEEe
Confidence 333433 3457888875
No 455
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=50.70 E-value=3.6e+02 Score=29.20 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=47.1
Q ss_pred ccEEEEecCCc-cEEEEEcC-CCcEEEEeeCCCCcceeEEEEeccc--cccccceEEEecEEEEEeecCC--CcceEEEE
Q psy12803 685 NVMDFSLDENG-LWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLL--HKKVGDMFVVCGVLYVVDSVTD--RNTNIRFA 758 (902)
Q Consensus 685 ~~iD~avDE~G-LWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~--k~~~~naFmvCGvLY~~~s~~~--~~~~I~y~ 758 (902)
-|..+.+|+.| .|++|++. ..+|.|.||+..-+.+...-.+... ...+-..|-.=|.-|.+.|... ....+.|+
T Consensus 121 ~Dp~vf~DdDG~~Yl~~~~~~~~~i~i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~ 200 (265)
T cd08985 121 RDFGLFVDDDGTAYLLYSDRDNSDLYIYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYA 200 (265)
T ss_pred cCCceEEcCCCCEEEEEecCCCCceEEEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCCCccCCceEEE
Confidence 45566778875 78999876 5789999998766665433222222 2445556666799999988542 12345555
No 456
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=50.02 E-value=60 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=25.6
Q ss_pred CCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEEeec
Q psy12803 320 KPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLAD 366 (902)
Q Consensus 320 ~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC~A~ 366 (902)
.+.+.|...+... ......+.....+.+|+|.++|.|+
T Consensus 26 ~~~~~l~~~~~k~---------~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKS---------LETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEE---------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccc---------cccceEEEEecCCCCCCEEEEEEEc
Confidence 5567776544332 2233456777888899999999994
No 457
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=49.85 E-value=2e+02 Score=37.90 Aligned_cols=128 Identities=23% Similarity=0.227 Sum_probs=71.1
Q ss_pred eEEEeecCCccEEEEEcCCccEEEEEecCCCC-CCccccc---------CCcccEEEEecCCccEEEEEcCCCcEEEEee
Q psy12803 643 SFYYHKKFSNSIVQFDLGSSKIINIVNLSTVD-PNIKLYK---------TGYNVMDFSLDENGLWVIYGLSNNNTAVTKL 712 (902)
Q Consensus 643 ~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~-~~~~~y~---------~~~~~iD~avDE~GLWviY~~~~~~ivvskl 712 (902)
.||..-..++.|.+||+.+..+.....-.... .+...+. .-..-..+|+|.+|. ||-+..+|=.|.++
T Consensus 753 ~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~--LYVADs~N~rIrvi 830 (1057)
T PLN02919 753 ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ--IYVADSYNHKIKKL 830 (1057)
T ss_pred EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc--EEEEECCCCEEEEE
Confidence 49988888899999999987653211100000 0000000 001224788898885 66665556667888
Q ss_pred CCCCcceeEEEEecc--c----------cccccceEEEecEEEEEeecCCCcceEEEEEeCCCCce-eeeeeeecCC
Q psy12803 713 DTATLQIQYTWNITL--L----------HKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDL-LEVSLNFTNP 776 (902)
Q Consensus 713 d~~~l~v~~tw~t~~--~----------k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~-~~~~i~f~~~ 776 (902)
|+.+-.+...--+.. . ..-.+=||--.|-||++++. +..|. .+|+.+++. +...+.+...
T Consensus 831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~---Nn~Ir-vid~~~~~~~~~~~l~~~~~ 903 (1057)
T PLN02919 831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN---NSLIR-YLDLNKGEAAEILTLELKGV 903 (1057)
T ss_pred ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC---CCEEE-EEECCCCccceeEeeccccc
Confidence 888766554332221 0 01112244456889999873 44555 678888765 3334554443
No 458
>PHA03240 envelope glycoprotein M; Provisional
Probab=49.58 E-value=25 Score=36.45 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=39.9
Q ss_pred EEEEcCCeEEEEEecCCCCCCceEEec-------CCCc-c--c----c--c-----------CCccceeccCCcEEEEee
Q psy12803 301 IVVREGDNVRLRCVATGHPKPSIIWKT-------SENK-P--I----T--L-----------GSWKDSAVASSTLNFTRI 353 (902)
Q Consensus 301 v~v~eGe~v~L~C~a~G~P~p~v~W~k-------~~~~-~--~----~--~-----------~~~~~~~~~~~sL~I~~V 353 (902)
+++.+|++|+|.-.---.|.-.+.|++ .++. . + + . +......-.+++|.|.+|
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 678899999997543334667899998 2221 0 0 0 0 001112224679999999
Q ss_pred eeecCceeE
Q psy12803 354 NRINMGAYM 362 (902)
Q Consensus 354 t~~DsG~Yt 362 (902)
+.+|+|+|.
T Consensus 113 n~sd~~nYc 121 (258)
T PHA03240 113 NLSDAGEYC 121 (258)
T ss_pred eecCcchhh
Confidence 999999994
No 459
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=49.14 E-value=3.6e+02 Score=29.40 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=41.2
Q ss_pred cEEEEecCCcc-EEEEEcC--------CCcEEEEeeCCCCccee----EEEEecc-ccccccceEEEecEEEEEeec
Q psy12803 686 VMDFSLDENGL-WVIYGLS--------NNNTAVTKLDTATLQIQ----YTWNITL-LHKKVGDMFVVCGVLYVVDSV 748 (902)
Q Consensus 686 ~iD~avDE~GL-WviY~~~--------~~~ivvskld~~~l~v~----~tw~t~~-~k~~~~naFmvCGvLY~~~s~ 748 (902)
|-.+..|+.|- |++|+.. .++|.+.+||+.++.+. ..|+... .-..+..+|=..|..|.+.|.
T Consensus 119 Dp~vf~d~dG~~Y~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~ 195 (288)
T cd09000 119 DPSLFFDDDGKVYLVGNGWDERRGYNGHGGIWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAE 195 (288)
T ss_pred CCceeEcCCCCEEEEecccCCccccCCCCcEEEEEEccccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEec
Confidence 33477887765 7888763 25799999998766543 2233221 224555677778999998874
No 460
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=48.30 E-value=72 Score=28.76 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=40.7
Q ss_pred CceeeeecCceEEEEEEeec-----cCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEE
Q psy12803 376 NRRVGVPIGRTATLECEVEA-----FPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCI 450 (902)
Q Consensus 376 p~~~~v~~G~~v~L~C~a~g-----~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~ 450 (902)
+....+..|+.++..|...- .....|.|..++..+ .+.+++..... .|.++|.+.....+-.|-|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i---P~~qy~~in~~------~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI---PGSQYRVINDT------VSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES---TCGCEEEESTT------EEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC---ChhHcceeCCe------EEEEEEccCCCCCceEEEEE
Confidence 34456889999999998852 245689997776643 23333333222 25688888877777778886
Q ss_pred E
Q psy12803 451 S 451 (902)
Q Consensus 451 A 451 (902)
.
T Consensus 81 l 81 (89)
T PF06328_consen 81 L 81 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 461
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=47.73 E-value=4.5e+02 Score=29.51 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=89.0
Q ss_pred CeEEEeecCCccEEEEEcCCcc--EEEEE--ecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeC--CC
Q psy12803 642 NSFYYHKKFSNSIVQFDLGSSK--IINIV--NLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLD--TA 715 (902)
Q Consensus 642 g~lYy~~~~s~~ivkydl~~~~--~~~~~--~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld--~~ 715 (902)
..||--..+...|..|++.... +.... .++. + .+--.|-|.-|.+=|+|+. ..++.+.+-.++ ..
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G------~GPRh~~f~pdg~~~Yv~~-e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--G------SGPRHLAFSPDGKYAYVVN-ELSNTVSVFDYDPSDG 226 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--T------SSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTT
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--C------CCCcEEEEcCCcCEEEEec-CCCCcEEEEeecccCC
Confidence 3455567888899999998866 53322 3332 1 1223355555544444542 126778888888 44
Q ss_pred CcceeEEEEecc---ccccccceEEEe--c-EEEEEeecCCCcceEEEEEeCCCCceeeee-eeecCCCCCceeeecCCC
Q psy12803 716 TLQIQYTWNITL---LHKKVGDMFVVC--G-VLYVVDSVTDRNTNIRFALDLYKNDLLEVS-LNFTNPFTNTTMITYNSR 788 (902)
Q Consensus 716 ~l~v~~tw~t~~---~k~~~~naFmvC--G-vLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~-i~f~~~~~~~~~l~YnP~ 788 (902)
.|+..+++.|-- .......+..+. | .|||.... .++-..|..|..+++...+. +.... ..-..+.-+|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~ 302 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPD 302 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TT
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeCCC--CCccEEEEeCC
Confidence 577777777642 222233444454 4 68987653 45556677777777766655 33323 22456677999
Q ss_pred CCeEEEEeC--CeEEEEEeE
Q psy12803 789 YKDLYTWDR--GNSLTYPIR 806 (902)
Q Consensus 789 d~~LY~wd~--g~~~~Y~v~ 806 (902)
.+.||+=|. +.+..|++.
T Consensus 303 g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 303 GRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEEEe
Confidence 999999874 467777664
No 462
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=47.01 E-value=4.1e+02 Score=30.48 Aligned_cols=149 Identities=18% Similarity=0.231 Sum_probs=98.0
Q ss_pred CCCcceEEE--cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-C-CcE
Q psy12803 632 FQGNAHVVF--NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-N-NNT 707 (902)
Q Consensus 632 ~~Gtg~vvy--ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~-~~i 707 (902)
+..+|-.|- ++.+|=...++..|..+|+.+.++....... ..-..+|+|..| +-+|.+. . ++-
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG------------~~P~~~~~~~~~-~~vYV~n~~~~~~ 140 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG------------LGPVGLAVDPDG-KYVYVANAGNGNN 140 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec------------cCCceEEECCCC-CEEEEEecccCCc
Confidence 344554443 2447777777889999998887775443332 122566777666 2333333 2 577
Q ss_pred EEEeeCCCCcceeEEEEeccccccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceee-eeeeecCCCCCceeeec
Q psy12803 708 AVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLE-VSLNFTNPFTNTTMITY 785 (902)
Q Consensus 708 vvskld~~~l~v~~tw~t~~~k~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~-~~i~f~~~~~~~~~l~Y 785 (902)
.++.||..+..+.++-.+.. .--+-||.-=|. +|++++ .+..-+.+|+.+..... -...--.....-..+.-
T Consensus 141 ~vsvid~~t~~~~~~~~vG~--~P~~~a~~p~g~~vyv~~~----~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGN--TPTGVAVDPDGNKVYVTNS----DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred eEEEEeCCCCeEEEEEecCC--CcceEEECCCCCeEEEEec----CCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 88999999999888844432 226778888888 999984 44566778877765442 11112445566678889
Q ss_pred CCCCCeEEEEeCCe
Q psy12803 786 NSRYKDLYTWDRGN 799 (902)
Q Consensus 786 nP~d~~LY~wd~g~ 799 (902)
+|..+++|+-+++.
T Consensus 215 ~~~g~~~yV~~~~~ 228 (381)
T COG3391 215 DPDGNRVYVANDGS 228 (381)
T ss_pred CCCCCEEEEEeccC
Confidence 99999999999886
No 463
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=46.97 E-value=94 Score=36.54 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred cCCcEEEEeeeeecCceeEEeecC
Q psy12803 344 ASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 344 ~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+.|.|.+++.+|+|.|+-...+
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~ 110 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRN 110 (439)
T ss_dssp ------------------------
T ss_pred cCCceEEeccccccCeeEEEEecC
Confidence 446899999999999999998876
No 464
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=46.66 E-value=54 Score=31.26 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=25.0
Q ss_pred EEEcCeEEEeecC----CccEEEEEcCCccEEEEEecC
Q psy12803 638 VVFNNSFYYHKKF----SNSIVQFDLGSSKIINIVNLS 671 (902)
Q Consensus 638 vvyng~lYy~~~~----s~~ivkydl~~~~~~~~~~~~ 671 (902)
|.-||.|||--.. .+.|+.||+++++.. ...+|
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~-~i~~P 38 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFR-FIKLP 38 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEE-EEEee
Confidence 4569999997443 569999999999984 34444
No 465
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=46.54 E-value=60 Score=30.93 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=45.7
Q ss_pred ecEEEEEeecCCCcceEEEEEeCCCCceeeeeee--ecCCCCCceeeecCCCCCeEEEEeCCeEE---EEEeEEe
Q psy12803 739 CGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLN--FTNPFTNTTMITYNSRYKDLYTWDRGNSL---TYPIRYH 808 (902)
Q Consensus 739 CGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~--f~~~~~~~~~l~YnP~d~~LY~wd~g~~~---~Y~v~f~ 808 (902)
=||||-+-........+-.+||+.+++-..+.++ ..........+.|+ .+|-+.+.-+.- ..+|-.-
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~---G~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYK---GKLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeC---CeEEEEEecCCCCcceEEEEEe
Confidence 3899988776555677889999999998888886 55555666666774 556665444433 2555543
No 466
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=46.29 E-value=11 Score=25.73 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.6
Q ss_pred eecCCCCCeEEEEe
Q psy12803 783 ITYNSRYKDLYTWD 796 (902)
Q Consensus 783 l~YnP~d~~LY~wd 796 (902)
++-||.|+.+|-||
T Consensus 8 m~~fP~D~S~y~WD 21 (28)
T PF08076_consen 8 MHHFPSDKSIYHWD 21 (28)
T ss_pred eccCCCccceeehh
Confidence 56799999999998
No 467
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=46.04 E-value=1.2e+02 Score=35.31 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=87.3
Q ss_pred cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCc------ccc--cCCcccEEEEecCCcc---EEEEEcC----CC
Q psy12803 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNI------KLY--KTGYNVMDFSLDENGL---WVIYGLS----NN 705 (902)
Q Consensus 641 ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~------~~y--~~~~~~iD~avDE~GL---WviY~~~----~~ 705 (902)
+|-.-|.+.+ .+++-|+|.++....+..+.+..++. .+| .++.+ =|++||.|+ |---... -+
T Consensus 231 dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S--LLv~~~dG~vsQWFdvr~~~~p~l~ 307 (733)
T COG4590 231 DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS--LLVVHEDGLVSQWFDVRRDGQPHLN 307 (733)
T ss_pred CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee--EEEEcCCCceeeeeeeecCCCCcce
Confidence 4555666555 67888889888875443333222211 122 23333 378999997 4432221 13
Q ss_pred cEEEEeeCCCCcceeEEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceee-----eeeeecCCCCCc
Q psy12803 706 NTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLE-----VSLNFTNPFTNT 780 (902)
Q Consensus 706 ~ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~-----~~i~f~~~~~~~ 780 (902)
++..-||++.... |+. -+.+.+.+|++|-+.+-... .-+.|..-|+..
T Consensus 308 h~R~f~l~pa~~~-----------------~l~----------pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 308 HIRNFKLAPAEVQ-----------------FLL----------PETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eeeccccCcccce-----------------eec----------cccccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 4455555554332 221 23466778888877765432 238899999999
Q ss_pred eeeecCCCCCeEEEEeCCeEEEEEeEE
Q psy12803 781 TMITYNSRYKDLYTWDRGNSLTYPIRY 807 (902)
Q Consensus 781 ~~l~YnP~d~~LY~wd~g~~~~Y~v~f 807 (902)
+-++..|+...|-..|.|.+-.|.|.=
T Consensus 361 ~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 361 QLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ceeeeCcccchheeecCCceEEEEecC
Confidence 999999999999999999999998863
No 468
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=45.79 E-value=3.4e+02 Score=27.51 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=73.4
Q ss_pred EEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEE
Q psy12803 644 FYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTW 723 (902)
Q Consensus 644 lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw 723 (902)
+++-......|.-||+.+.........+ ...-..++.+.++.+++.+..++.+.+-.++ +.+..+.+
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~ 173 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKCLTTLRGH-----------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKCVATL 173 (289)
T ss_pred EEEEecCCCeEEEEECCCcEEEEEeccC-----------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc--ccccceeE
Confidence 3333333557888888865543322211 1112344445556666655546677665554 23333333
Q ss_pred Eecccccccc-ceEEEec-EEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEe-CCeE
Q psy12803 724 NITLLHKKVG-DMFVVCG-VLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWD-RGNS 800 (902)
Q Consensus 724 ~t~~~k~~~~-naFmvCG-vLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd-~g~~ 800 (902)
.. ....+. -+|.--| .|++... + ..-+.||+.+++... .|......+..+.++|..+.|++.+ +|.+
T Consensus 174 ~~--~~~~i~~~~~~~~~~~l~~~~~----~-~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 174 TG--HTGEVNSVAFSPDGEKLLSSSS----D-GTIKLWDLSTGKCLG---TLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred ec--CccccceEEECCCcCEEEEecC----C-CcEEEEECCCCceec---chhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 31 111111 1222222 2333222 2 234578887754332 1222334788899999978888888 9999
Q ss_pred EEEEeE
Q psy12803 801 LTYPIR 806 (902)
Q Consensus 801 ~~Y~v~ 806 (902)
..|++.
T Consensus 244 ~i~~~~ 249 (289)
T cd00200 244 RVWDLR 249 (289)
T ss_pred EEEEcC
Confidence 999986
No 469
>PLN02153 epithiospecifier protein
Probab=44.60 E-value=4.9e+02 Score=29.06 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred CcceEEEcCeEEEee-----cCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcE
Q psy12803 634 GNAHVVFNNSFYYHK-----KFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNT 707 (902)
Q Consensus 634 Gtg~vvyng~lYy~~-----~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~i 707 (902)
|...|++++.||--- .....+.+||+++.+-.....+.. ... +.. -...-.++.++-|+|+=+.. .+..
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~--~~~-p~~--R~~~~~~~~~~~iyv~GG~~~~~~~ 152 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE--EGG-PEA--RTFHSMASDENHVYVFGGVSKGGLM 152 (341)
T ss_pred ceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC--CCC-CCC--ceeeEEEEECCEEEEECCccCCCcc
Confidence 455678888888531 123589999999875533222210 000 101 11122456666666664432 1110
Q ss_pred -------EEEeeCCCCcceeEEEEecc------ccccccceEEEecEEEEEeecCC---------CcceEEEEEeCCCCc
Q psy12803 708 -------AVTKLDTATLQIQYTWNITL------LHKKVGDMFVVCGVLYVVDSVTD---------RNTNIRFALDLYKND 765 (902)
Q Consensus 708 -------vvskld~~~l~v~~tw~t~~------~k~~~~naFmvCGvLY~~~s~~~---------~~~~I~y~~Dt~~~~ 765 (902)
.|-.+|++ ..+|..-- ..+....+-++-|.||++-.... ....--++||+.+++
T Consensus 153 ~~~~~~~~v~~yd~~----~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 153 KTPERFRTIEAYNIA----DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCCcccceEEEEECC----CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 23334444 35787521 12222234556788999843210 112235789999998
Q ss_pred eeeeee--eecCCCCCceeeecCCCCCeEEEEeC
Q psy12803 766 LLEVSL--NFTNPFTNTTMITYNSRYKDLYTWDR 797 (902)
Q Consensus 766 ~~~~~i--~f~~~~~~~~~l~YnP~d~~LY~wd~ 797 (902)
=..+.. .++..-..++++-++ .+||++-.
T Consensus 229 W~~~~~~g~~P~~r~~~~~~~~~---~~iyv~GG 259 (341)
T PLN02153 229 WTEVETTGAKPSARSVFAHAVVG---KYIIIFGG 259 (341)
T ss_pred EEeccccCCCCCCcceeeeEEEC---CEEEEECc
Confidence 665542 133333455566554 78999854
No 470
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=44.60 E-value=4e+02 Score=28.03 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=70.3
Q ss_pred EEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEE
Q psy12803 644 FYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYT 722 (902)
Q Consensus 644 lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~t 722 (902)
||.-......|..||+.+.++... ++.... -..++++..|-.+..+.. .+. |..+|..+.+...+
T Consensus 45 l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~----------~~~~~~~~~g~~l~~~~~~~~~--l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATGEVIGT--LPSGPD----------PELFALHPNGKILYIANEDDNL--VTVIDIETRKVLAE 110 (300)
T ss_pred EEEEECCCCeEEEEECCCCcEEEe--ccCCCC----------ccEEEECCCCCEEEEEcCCCCe--EEEEECCCCeEEeE
Confidence 444444556888999998766432 221100 123455555543322222 343 33455555444433
Q ss_pred EEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEE--eCCeE
Q psy12803 723 WNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTW--DRGNS 800 (902)
Q Consensus 723 w~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~w--d~g~~ 800 (902)
..... ...+-+|---|-++++.+. +..+.+.||+.+.+... .+... .....+.++|..+.||+- .+|.+
T Consensus 111 ~~~~~--~~~~~~~~~dg~~l~~~~~---~~~~~~~~d~~~~~~~~-~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 111 IPVGV--EPEGMAVSPDGKIVVNTSE---TTNMAHFIDTKTYEIVD-NVLVD---QRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred eeCCC--CcceEEECCCCCEEEEEec---CCCeEEEEeCCCCeEEE-EEEcC---CCccEEEECCCCCEEEEEcCCCCEE
Confidence 33211 1111122222444444332 23455668887765432 12111 234568889998888764 36888
Q ss_pred EEEEeEE
Q psy12803 801 LTYPIRY 807 (902)
Q Consensus 801 ~~Y~v~f 807 (902)
..|++.-
T Consensus 182 ~i~d~~~ 188 (300)
T TIGR03866 182 SVIDVAT 188 (300)
T ss_pred EEEEcCc
Confidence 8888763
No 471
>PRK03629 tolB translocation protein TolB; Provisional
Probab=43.84 E-value=3.8e+02 Score=31.26 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=65.7
Q ss_pred eEEEe--ecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcce
Q psy12803 643 SFYYH--KKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQI 719 (902)
Q Consensus 643 ~lYy~--~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v 719 (902)
.|+|. +.+..+|..+|+.+.......... .....++....|-+++|.+. .+...|-.+|..+-.+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCC------------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 35654 334457999999987664321111 11233444555777777765 3444555555544333
Q ss_pred eE-EEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 720 QY-TWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 720 ~~-tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
++ +|.. ......+|--.|-.-++-+... ...--|.+|+.++....+. ..+ ...+..+.|.-+.|+.-.
T Consensus 324 ~~lt~~~---~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~Lt----~~~-~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 324 QRITWEG---SQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLT----DTF-LDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EEeecCC---CCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEEeC----CCC-CCCCceECCCCCEEEEEE
Confidence 22 2321 1112234444553322222222 2234577899888655433 111 223567778777665533
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.72 E-value=4.4e+02 Score=27.97 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=113.6
Q ss_pred hhcccCCcceEeCc-CCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCccccc-CCcccEEEEecC
Q psy12803 616 MFKSDAKSWTYNLK-EPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYK-TGYNVMDFSLDE 693 (902)
Q Consensus 616 ~~~~~~~~~~~~l~-~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~-~~~~~iD~avDE 693 (902)
++..+....+-+|+ ..+-|-|-+....++|---.....-.|||-.+=....+.. |. .++ -|+-|.
T Consensus 74 ~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~----------y~GeGW---gLt~d~ 140 (262)
T COG3823 74 DLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS----------YEGEGW---GLTSDD 140 (262)
T ss_pred eccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc----------cCCcce---eeecCC
Confidence 34445545555666 5688999999999998877777778888877643322211 22 122 356666
Q ss_pred CccEEEEEcCCCcEEEEeeCCCCcceeEEEEeccccccccc---eEEEecEEEEEeecCC-------CcceEEEEEeCCC
Q psy12803 694 NGLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGD---MFVVCGVLYVVDSVTD-------RNTNIRFALDLYK 763 (902)
Q Consensus 694 ~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~~~k~~~~n---aFmvCGvLY~~~s~~~-------~~~~I~y~~Dt~~ 763 (902)
.-||+- +++--|...||++|....+...+.+-.-+++ -=-|=|-|||=-=.++ .+.+|.--+|+..
T Consensus 141 ~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 141 KNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 667764 7788899999999999999999987766655 3456677777433222 2333444444332
Q ss_pred CceeeeeeeecCCCCCceeeecCCCCCeEEEEeCCeEEEEEeEEee
Q psy12803 764 NDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE 809 (902)
Q Consensus 764 ~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd~g~~~~Y~v~f~~ 809 (902)
-. ..++..= +.-..+.-|.|.|.-.+||+=-.-+-..|.|+|.+
T Consensus 217 L~-~~~~~~~-~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~ 260 (262)
T COG3823 217 LL-KELNLDK-SNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDE 260 (262)
T ss_pred Cc-hhcCccc-cccccccceeecCcCCeEEEecCcCceeEEEEecC
Confidence 11 0111111 11345667899999999999999888999999854
No 473
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.84 E-value=5.3e+02 Score=37.19 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=78.4
Q ss_pred EEEcCCeEEEEEecCCCCCCceEEecCCCcccccCCccceeccCCcEEEEeeeeecCceeEE--eecC------------
Q psy12803 302 VVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMC--LADN------------ 367 (902)
Q Consensus 302 ~v~eGe~v~L~C~a~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~sL~I~~Vt~~DsG~YtC--~A~N------------ 367 (902)
-+..|.++.|.=.+...-...+.|..+++.... . ... ..+..++|.|+- .|.|
T Consensus 1796 ~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-g---------k~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~ 1862 (2740)
T TIGR00864 1796 FFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-G---------KHA---CMTFPDAGTFAIRLNASNAVSGKSASREFF 1862 (2740)
T ss_pred ceecCcEEEEEEEccCCCeeEEEEEeCCCCccc-c---------cee---EEecCCCeEEEEEEEEEcccCcceeeeeEE
Confidence 355678888877754334457888776543110 0 001 145567777764 3445
Q ss_pred ---CCCEEEEcCceeeeecCceEEEEEEeeccCCceEEEEecCCeeeec-CCceEEEeecCCCceeeEeEEEEeccCCCC
Q psy12803 368 ---VPPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEH-DGVKYSISDVDKGSYQYIMQLNISNVNISD 443 (902)
Q Consensus 368 ---~~P~i~~~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~s~~~~stL~I~~V~~~D 443 (902)
..-.+........+..|+.++|++.+...+..++.|...++..... ....+. . ...-
T Consensus 1863 VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-----------------H--sY~~ 1923 (2740)
T TIGR00864 1863 AEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-----------------H--SFPR 1923 (2740)
T ss_pred EEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE-----------------e--ecCC
Confidence 1112222233345668999999999988888889998776543221 111111 0 0112
Q ss_pred CeEE--EEEEEeCCceeEEEEEEEeecC
Q psy12803 444 FDTY--RCISKNEVDIAKGSLILFESNA 469 (902)
Q Consensus 444 sG~Y--tC~A~N~~G~~~~s~~L~V~~~ 469 (902)
-|.| +-.|.|.++...+.+.+.|.++
T Consensus 1924 ~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864 1924 VDDHMVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred CCcEEEEEEEEeccceeeeeEEEEEEEe
Confidence 3444 4567899998888888887665
No 474
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=40.65 E-value=3.2e+02 Score=30.51 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=42.0
Q ss_pred cEEEEEeec-----CCCcce--EEEEEeCCCCceee-ee-eeecCCCCCceeeecCCCCCeEEEEeCCeEEEEEeEEee
Q psy12803 740 GVLYVVDSV-----TDRNTN--IRFALDLYKNDLLE-VS-LNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPIRYHE 809 (902)
Q Consensus 740 GvLY~~~s~-----~~~~~~--I~y~~Dt~~~~~~~-~~-i~f~~~~~~~~~l~YnP~d~~LY~wd~g~~~~Y~v~f~~ 809 (902)
|.+|+.+.. ...... =-|-||....+.+. .. |.++| .|..+|.+|.||+=|-..-..|.+.|..
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N------Gla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN------GLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC------ceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 777777665 211112 35777764444332 33 77777 7999999999999999666666666643
No 475
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=40.31 E-value=2.4e+02 Score=31.06 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=47.6
Q ss_pred ccEE--EEecCCc-cEEEEEc-----CCCcEEEEeeCCCCccee----E-------EEEecc-------ccccccceEEE
Q psy12803 685 NVMD--FSLDENG-LWVIYGL-----SNNNTAVTKLDTATLQIQ----Y-------TWNITL-------LHKKVGDMFVV 738 (902)
Q Consensus 685 ~~iD--~avDE~G-LWviY~~-----~~~~ivvskld~~~l~v~----~-------tw~t~~-------~k~~~~naFmv 738 (902)
..|| +.+|+.| +|++|+. .+++|.+.+|+++.+.+. + .|.... .....+..||+
T Consensus 122 ~~iDp~~f~DdDG~~Yl~~~~~~~~~~~~~i~~~eL~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~ 201 (291)
T cd08981 122 MCLDGTLYVDEDGKPWMVFCHEWVQVYDGTIEAVRLSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLY 201 (291)
T ss_pred ceEcCceEEcCCCCEEEEEEecccccCCCCEEEEEeCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEE
Confidence 4466 6779887 7777763 246799999999876431 1 343222 11234666999
Q ss_pred e---cEEEEEeecC-CCcceEEEEEeC
Q psy12803 739 C---GVLYVVDSVT-DRNTNIRFALDL 761 (902)
Q Consensus 739 C---GvLY~~~s~~-~~~~~I~y~~Dt 761 (902)
+ |..|.+.|.. ...-.+.+++-.
T Consensus 202 k~~~G~YYl~yS~~~~~~Y~~~~~rs~ 228 (291)
T cd08981 202 RTKSGRLLMLWSSFSDGGYAQGVARSE 228 (291)
T ss_pred EeCCCcEEEEEEecCCCCEEEEEEEcC
Confidence 8 8888887742 223356666644
No 476
>PHA03189 UL14 tegument protein; Provisional
Probab=40.12 E-value=1.6e+02 Score=32.59 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=17.0
Q ss_pred EEEEeccCCCCCeEEEEEEEeCCc
Q psy12803 433 QLNISNVNISDFDTYRCISKNEVD 456 (902)
Q Consensus 433 tL~I~~V~~~DsG~YtC~A~N~~G 456 (902)
+|++. +..+-+|.|.|+..|...
T Consensus 135 tLtF~-v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 135 TLTFR-VSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEEE-EEecccceEEEEeccccc
Confidence 45543 456779999999999753
No 477
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=39.31 E-value=23 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=19.8
Q ss_pred ccCCcEEEEeeeeecCceeEEeecC
Q psy12803 343 VASSTLNFTRINRINMGAYMCLADN 367 (902)
Q Consensus 343 ~~~~sL~I~~Vt~~DsG~YtC~A~N 367 (902)
..+-+|.|..++.+|+|.|.-++.+
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~ 92 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTN 92 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEc
Confidence 4567999999999999999988766
No 478
>PHA03189 UL14 tegument protein; Provisional
Probab=37.54 E-value=74 Score=35.01 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCeEEEEEecCC--CCCCce
Q psy12803 297 SSSPIVVREGDNVRLRCVATG--HPKPSI 323 (902)
Q Consensus 297 ~~~~v~v~eGe~v~L~C~a~G--~P~p~v 323 (902)
.+.++.+..|+.|++.|.+.. .|...|
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WPevsI 86 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSI 86 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCceeeE
Confidence 456677889999999999765 454443
No 479
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=37.18 E-value=3.9e+02 Score=28.24 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=16.0
Q ss_pred EEEEEEeeccCC--ceEEEEecCCee
Q psy12803 387 ATLECEVEAFPL--SVRYWEFIDGTL 410 (902)
Q Consensus 387 v~L~C~a~g~P~--P~v~W~k~~~~l 410 (902)
-...|.+.--|. ..+.|..++...
T Consensus 92 g~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 92 GYAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred CEEEEEcceeeCCCeEEEEEECCccC
Confidence 345677766663 588998777653
No 480
>KOG0278|consensus
Probab=36.42 E-value=5.3e+02 Score=28.00 Aligned_cols=85 Identities=12% Similarity=0.248 Sum_probs=58.6
Q ss_pred EEeeCCCCcceeEEEEecccccccc----ceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeee-cCCCCCceee
Q psy12803 709 VTKLDTATLQIQYTWNITLLHKKVG----DMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNF-TNPFTNTTMI 783 (902)
Q Consensus 709 vskld~~~l~v~~tw~t~~~k~~~~----naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f-~~~~~~~~~l 783 (902)
|.=+|+.+|.+.++.+..|+=.+|+ .-|.||| ...--.|.||.+|+.++.. | ..-++-+-.|
T Consensus 207 V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaG----------ged~~~~kfDy~TgeEi~~---~nkgh~gpVhcV 273 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAG----------GEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCV 273 (334)
T ss_pred eEEeccccccceeeccCccccccccccCCCceEEec----------CcceEEEEEeccCCceeee---cccCCCCceEEE
Confidence 4557888999888888877554443 1455665 1223457788888776654 3 4556778899
Q ss_pred ecCCCCCeEEEE--eCCeEEEEEeEE
Q psy12803 784 TYNSRYKDLYTW--DRGNSLTYPIRY 807 (902)
Q Consensus 784 ~YnP~d~~LY~w--d~g~~~~Y~v~f 807 (902)
.|.|. ..||+- .||.+......-
T Consensus 274 rFSPd-GE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 274 RFSPD-GELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EECCC-CceeeccCCCceEEEEEecC
Confidence 99996 889985 578877766553
No 481
>PLN02193 nitrile-specifier protein
Probab=36.27 E-value=7.9e+02 Score=29.04 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=69.8
Q ss_pred cCCCCCcceEEEcCeEEEeec-----CCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC
Q psy12803 629 KEPFQGNAHVVFNNSFYYHKK-----FSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS 703 (902)
Q Consensus 629 ~~~~~Gtg~vvyng~lYy~~~-----~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~ 703 (902)
|.+-.+...+++++.||.--. ..+.+.+||+.+.+-. .++.. .....-... .-+++-++=++|+++..
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~---~~~~~-~~~~~~R~~---~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF---HCSTP-GDSFSIRGG---AGLEVVQGKVWVVYGFN 338 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE---eCCCC-CCCCCCCCC---cEEEEECCcEEEEECCC
Confidence 444556677889999987421 2347889999987543 33311 000000111 22334455688888753
Q ss_pred CC-cEEEEeeCCCCcceeEEEEecc-----cccccc-ceEEEecEEEEEeecCCC-------cce---EEEEEeCCCCce
Q psy12803 704 NN-NTAVTKLDTATLQIQYTWNITL-----LHKKVG-DMFVVCGVLYVVDSVTDR-------NTN---IRFALDLYKNDL 766 (902)
Q Consensus 704 ~~-~ivvskld~~~l~v~~tw~t~~-----~k~~~~-naFmvCGvLY~~~s~~~~-------~~~---I~y~~Dt~~~~~ 766 (902)
.. .-.|-.+|+.+. +|..-- +..... .|.++=+-||++--.... ... --|+||+.|++-
T Consensus 339 g~~~~dv~~yD~~t~----~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 339 GCEVDDVHYYDPVQD----KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred CCccCceEEEECCCC----EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 21 123445566543 475431 222233 344445688988654320 111 259999999886
Q ss_pred eeee
Q psy12803 767 LEVS 770 (902)
Q Consensus 767 ~~~~ 770 (902)
..+.
T Consensus 415 ~~~~ 418 (470)
T PLN02193 415 ERLD 418 (470)
T ss_pred EEcc
Confidence 6543
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=36.09 E-value=6.5e+02 Score=28.02 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=28.0
Q ss_pred CcceEeCc-CCCCCcceEEEcCeEEEee----cC-------CccEEEEEcCCccEE
Q psy12803 622 KSWTYNLK-EPFQGNAHVVFNNSFYYHK----KF-------SNSIVQFDLGSSKII 665 (902)
Q Consensus 622 ~~~~~~l~-~~~~Gtg~vvyng~lYy~~----~~-------s~~ivkydl~~~~~~ 665 (902)
+...-.|| .+-.+.+.++++|.||--= .+ ...+-+||+.+.+-.
T Consensus 43 W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 43 WQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred ceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 33333444 2345677899999999531 11 247899999987643
No 483
>PHA03052 Hypothetical protein; Provisional
Probab=35.84 E-value=48 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=24.8
Q ss_pred CcEEEEcCCeEEEEEecC-C--CCCCceEEecCCCc
Q psy12803 299 SPIVVREGDNVRLRCVAT-G--HPKPSIIWKTSENK 331 (902)
Q Consensus 299 ~~v~v~eGe~v~L~C~a~-G--~P~p~v~W~k~~~~ 331 (902)
..+.+..|..++|.|++. | ...+.|.|.-++..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 457788999999999986 2 33567889876544
No 484
>PHA03052 Hypothetical protein; Provisional
Probab=35.27 E-value=1.1e+02 Score=26.16 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred ceeeeecCceEEEEEEee-ccC--CceEEEEecCCeee
Q psy12803 377 RRVGVPIGRTATLECEVE-AFP--LSVRYWEFIDGTLI 411 (902)
Q Consensus 377 ~~~~v~~G~~v~L~C~a~-g~P--~P~v~W~k~~~~l~ 411 (902)
..+.+..|..++|.|.|. +.| .+.|.|.-|+....
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 556788999999999996 333 55788988776663
No 485
>PRK02889 tolB translocation protein TolB; Provisional
Probab=35.10 E-value=7.7e+02 Score=28.58 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=59.8
Q ss_pred CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEecccc
Q psy12803 651 SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLLH 729 (902)
Q Consensus 651 s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~k 729 (902)
...|..+|+.+++.......+. . . ...+..-.|-+++|+.. +++.-|-.+|..+=.+.+. |....
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g---~-------~--~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~ 284 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKG---S-------N--SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL--TQSSG 284 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCC---C-------c--cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC--CCCCC
Confidence 3579999999886643332221 0 1 12333444556666543 4444444444332221111 11111
Q ss_pred ccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEe
Q psy12803 730 KKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWD 796 (902)
Q Consensus 730 ~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd 796 (902)
....-+|.-=|- |+.+.. .... .--|.+|+.+++...+ .|.. .+.....+.|..+.|+.-.
T Consensus 285 ~~~~~~wSpDG~~l~f~s~-~~g~-~~Iy~~~~~~g~~~~l--t~~g--~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSD-RGGA-PQIYRMPASGGAAQRV--TFTG--SYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred CCcCeEEcCCCCEEEEEec-CCCC-cEEEEEECCCCceEEE--ecCC--CCcCceEECCCCCEEEEEE
Confidence 112234544453 333322 1122 2347778776654433 3444 3345678899888886543
No 486
>PHA02790 Kelch-like protein; Provisional
Probab=34.67 E-value=7.4e+02 Score=29.35 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=72.5
Q ss_pred CceEEEecCCC-CCceEeecChhhhcccCCcceEeCcCCCCCcceEEEcCeEEEeec---CCccEEEEEcCCccEEEEEe
Q psy12803 594 SEKFWMTTDSD-PTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKK---FSNSIVQFDLGSSKIINIVN 669 (902)
Q Consensus 594 ~~~~~~~~~~~-~~~~~ey~~~~~~~~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~---~s~~ivkydl~~~~~~~~~~ 669 (902)
.+++|+..+.+ ...++.|.. ..+.|...-.||.+-.+.+.++++|.||---. ....+-+||..+.+-.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp----~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFH----GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEEC----CCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 45777776653 245666642 33445545567777788889999999997522 22467889998875543222
Q ss_pred cCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCcceeEEEEec--cc-cccccceEEEecEEEEEe
Q psy12803 670 LSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQYTWNIT--LL-HKKVGDMFVVCGVLYVVD 746 (902)
Q Consensus 670 ~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~~tw~t~--~~-k~~~~naFmvCGvLY~~~ 746 (902)
++. .+ +. .-.++=.+-|+|+ .+. +...||+ ..+|..- .. ++....+-++.|-||++-
T Consensus 394 m~~--~r---~~-----~~~~~~~~~IYv~----GG~--~e~ydp~----~~~W~~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 394 TYY--PH---YK-----SCALVFGRRLFLV----GRN--AEFYCES----SNTWTLIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred CCC--cc---cc-----ceEEEECCEEEEE----CCc--eEEecCC----CCcEeEcCCCCCCccccEEEEECCEEEEEC
Confidence 221 11 11 1122323333433 122 2335553 3688743 22 233344567889999996
Q ss_pred e
Q psy12803 747 S 747 (902)
Q Consensus 747 s 747 (902)
-
T Consensus 454 G 454 (480)
T PHA02790 454 G 454 (480)
T ss_pred C
Confidence 5
No 487
>KOG0200|consensus
Probab=34.35 E-value=1.5e+02 Score=36.32 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=64.5
Q ss_pred cCCcEEEEeeeeecCceeEEeecCCCCEEEE-------------cCceeeeecCceEEEEEEeeccCCceEEEEecCCee
Q psy12803 344 ASSTLNFTRINRINMGAYMCLADNVPPQILI-------------RNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTL 410 (902)
Q Consensus 344 ~~~sL~I~~Vt~~DsG~YtC~A~N~~P~i~~-------------~p~~~~v~~G~~v~L~C~a~g~P~P~v~W~k~~~~l 410 (902)
....+.+..+...|.|.|+|.+.|..-.+.. .+.......+..+.+ +...+.+.+.|.......
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 87 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSNINLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNLEIE 87 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEecCceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeeeccc
Confidence 3457899999999999999999981111110 122233344555555 444446677786543211
Q ss_pred e----ecCCc---e-E-EEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12803 411 I----EHDGV---K-Y-SISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLILF 465 (902)
Q Consensus 411 ~----~~~~~---~-~-~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~s~~L~ 465 (902)
. ..... . . ........ ......+.+.++...+.+.|.|...+..+.......+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (609)
T KOG0200|consen 88 CEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLE 150 (609)
T ss_pred ccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCCcccccccceEEe
Confidence 0 00000 0 0 00000100 12345699999999999999999987444433333333
No 488
>KOG0319|consensus
Probab=34.24 E-value=3.6e+02 Score=33.30 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=97.4
Q ss_pred cCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCCCCccee
Q psy12803 641 NNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDTATLQIQ 720 (902)
Q Consensus 641 ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~~~l~v~ 720 (902)
||.+-|--. .+.|+-.|+++.++. ++-....- .-.-=+||+++++-=++++..+.-+.|-.|+. ..+.
T Consensus 30 nG~~L~t~~-~d~Vi~idv~t~~~~----l~s~~~ed-----~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t--gk~i 97 (775)
T KOG0319|consen 30 NGQHLYTAC-GDRVIIIDVATGSIA----LPSGSNED-----EDEITALALTPDEEVLVTASRSQLLRVWSLPT--GKLI 97 (775)
T ss_pred CCCEEEEec-CceEEEEEccCCcee----cccCCccc-----hhhhheeeecCCccEEEEeeccceEEEEEccc--chHh
Confidence 455555433 346777899998774 33211111 11113456666666666666555666666654 4888
Q ss_pred EEEEeccccccccceEEEecEEEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCe---EEEEeC
Q psy12803 721 YTWNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKD---LYTWDR 797 (902)
Q Consensus 721 ~tw~t~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~---LY~wd~ 797 (902)
++|.+...++.+.-||--||.|-++-..+. +--+.|... .+.--.|...-+.+++|.++|..++ .|-.+|
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~----~v~VWdi~~---~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADG----RVKVWDIKN---GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccc----eEEEEEeeC---CEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 999999999999999999999998866432 222333322 2344567777788888888888877 677788
Q ss_pred CeEEEEEeEE
Q psy12803 798 GNSLTYPIRY 807 (902)
Q Consensus 798 g~~~~Y~v~f 807 (902)
+-...|+++=
T Consensus 171 ~~v~vwnl~~ 180 (775)
T KOG0319|consen 171 GTVRVWNLND 180 (775)
T ss_pred ceEEEEEccc
Confidence 8888888773
No 489
>KOG0292|consensus
Probab=33.22 E-value=92 Score=39.05 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=26.6
Q ss_pred CcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEec
Q psy12803 634 GNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNL 670 (902)
Q Consensus 634 Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~ 670 (902)
=.-+.|..|.|||.+ -+.|.+|||++.+-+..+.|
T Consensus 324 rpa~~v~~n~LfYvk--d~~i~~~d~~t~~d~~v~~l 358 (1202)
T KOG0292|consen 324 RPAYAVNGNGLFYVK--DRFIRSYDLRTQKDTAVASL 358 (1202)
T ss_pred CceEEEcCCEEEEEc--cceEEeeeccccccceeEec
Confidence 445678889999997 68999999999555444444
No 490
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=32.95 E-value=3.5e+02 Score=23.91 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=34.8
Q ss_pred eEEEEEEeeccCCceEEEEecCCeeeecCCceEEEeecCCCceeeEeEEEEeccCCCCCeEEEEEEEeCCceeEE
Q psy12803 386 TATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRCISKNEVDIAKG 460 (902)
Q Consensus 386 ~v~L~C~a~g~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~s~~~~stL~I~~V~~~DsG~YtC~A~N~~G~~~~ 460 (902)
...|.+++.+. ...+.|+.++..+-.....+ .+.+ .....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~---------------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH---------------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC---------------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 56666667666 45999988776662211110 0222 234679999999888886644
No 491
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=31.64 E-value=2.6e+02 Score=31.39 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=29.8
Q ss_pred EEcCeEEEeecCCccEEEEEcCCccEEEEEecCC
Q psy12803 639 VFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLST 672 (902)
Q Consensus 639 vyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~ 672 (902)
.|+|.||+....+..++++|+.+.+....+.++.
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC
Confidence 7999999999999999999999888866677773
No 492
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=30.79 E-value=6.9e+02 Score=26.97 Aligned_cols=62 Identities=13% Similarity=0.283 Sum_probs=39.4
Q ss_pred cEEEEecCCcc-EEEEEcCCCcEEEEeeCCCCccee---EE-EEecc---ccccccceEEEecEEEEEeecC
Q psy12803 686 VMDFSLDENGL-WVIYGLSNNNTAVTKLDTATLQIQ---YT-WNITL---LHKKVGDMFVVCGVLYVVDSVT 749 (902)
Q Consensus 686 ~iD~avDE~GL-WviY~~~~~~ivvskld~~~l~v~---~t-w~t~~---~k~~~~naFmvCGvLY~~~s~~ 749 (902)
|-++.+|+.|- |++|+.. .|.+.+|++..+.+. .+ +...- ....+-..|=..|..|.+.|..
T Consensus 122 Dp~~f~D~dG~~Yl~~~~~--~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~ 191 (269)
T cd09001 122 DPSLLFDDDGTAYLVYGGG--TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAW 191 (269)
T ss_pred cCceEEcCCCCEEEEeCCC--cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecC
Confidence 33456788764 7787753 899999999887762 22 22221 1233444455599999998854
No 493
>KOG0276|consensus
Probab=30.70 E-value=2.4e+02 Score=34.21 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=86.0
Q ss_pred hhcccCCcceEeCcCCCCCcceEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCc-ccEEEEecCC
Q psy12803 616 MFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGY-NVMDFSLDEN 694 (902)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~Gtg~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~-~~iD~avDE~ 694 (902)
-|++....++++.++. ---+|.|+|. -...+..|+=||..+...+.+.+... ..+|++.. .-+=+|.|.+
T Consensus 413 i~knfke~ksi~~~~~----~e~i~gg~Ll-g~~ss~~~~fydW~~~~lVrrI~v~~----k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 413 IFKNFKEHKSIRPDMS----AEGIFGGPLL-GVRSSDFLCFYDWESGELVRRIEVTS----KHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred EEecceeccccccccc----eeeecCCceE-EEEeCCeEEEEEcccceEEEEEeecc----ceeEEecCCCEEEEEecCc
Confidence 3455555556666643 2236777665 55667799999999988877766531 12555433 5567777777
Q ss_pred ccEEEEEcCCCcEEEEeeCCCCcceeEEEEeccccccccceEEEec--EEEEEeecCCCcceEEEEEeCCCCceee-ee-
Q psy12803 695 GLWVIYGLSNNNTAVTKLDTATLQIQYTWNITLLHKKVGDMFVVCG--VLYVVDSVTDRNTNIRFALDLYKNDLLE-VS- 770 (902)
Q Consensus 695 GLWviY~~~~~~ivvskld~~~l~v~~tw~t~~~k~~~~naFmvCG--vLY~~~s~~~~~~~I~y~~Dt~~~~~~~-~~- 770 (902)
.-=.-|-.. ++.+- +|+- +...-..++.||-+-| .=|+.... --. =.|.|-|.+++..+ +.
T Consensus 484 fyil~~n~d---~v~~a-------~e~g--~~v~eeGiedAfevLgE~sE~v~tg~--Wvg-D~fiytts~nrlnY~vgG 548 (794)
T KOG0276|consen 484 FYILKFNAD---AVANA-------VEQG--IEVTEEGIEDAFEVLGEVSESVKTGK--WVG-DCFIYTTSNNRLNYLVGG 548 (794)
T ss_pred eeEEEecHH---HHHHH-------HhcC--CCCcchhHHHHHHHHhhhhhheeece--eee-eEEEEeecccceeEEcCC
Confidence 322222211 00000 0000 0112223334444333 11111000 000 11222222222221 11
Q ss_pred --eeecCCCCCceeeecCCCCCeEEEEeC-CeEEEEEeEEeeec
Q psy12803 771 --LNFTNPFTNTTMITYNSRYKDLYTWDR-GNSLTYPIRYHEID 811 (902)
Q Consensus 771 --i~f~~~~~~~~~l~YnP~d~~LY~wd~-g~~~~Y~v~f~~~~ 811 (902)
...-..-+.+.+|.|=|+|.++|.=|. -+.+.|.+.+.-+.
T Consensus 549 e~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vle 592 (794)
T KOG0276|consen 549 ETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKILLEVLE 592 (794)
T ss_pred ceEEEEEeccchhheeeeecCCEEEEeecccceEeEeeehHHHH
Confidence 222233356789999999999999997 58888988865433
No 494
>KOG4441|consensus
Probab=30.33 E-value=1.1e+03 Score=28.83 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=96.2
Q ss_pred cCCcceEeCcCCCCCcceEEEcCeEEEe------ecCCccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecC
Q psy12803 620 DAKSWTYNLKEPFQGNAHVVFNNSFYYH------KKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDE 693 (902)
Q Consensus 620 ~~~~~~~~l~~~~~Gtg~vvyng~lYy~------~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE 693 (902)
+.|...-.||.+-...|.++-+|.||=- ....+.+-+||..+.+ |..++-.. ..-..+-+++=+
T Consensus 311 ~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~---W~~~a~M~-------~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 311 NEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ---WTPVAPMN-------TKRSDFGVAVLD 380 (571)
T ss_pred CcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc---eeccCCcc-------CccccceeEEEC
Confidence 3444455667777799999999999963 2344689999999987 54444111 112345555555
Q ss_pred CccEEEEEcC-CCc-EEEEeeCCCCcceeEEEEecccc---ccccceEEEecEEEEEeecCCC--cceEEEEEeCCCCce
Q psy12803 694 NGLWVIYGLS-NNN-TAVTKLDTATLQIQYTWNITLLH---KKVGDMFVVCGVLYVVDSVTDR--NTNIRFALDLYKNDL 766 (902)
Q Consensus 694 ~GLWviY~~~-~~~-ivvskld~~~l~v~~tw~t~~~k---~~~~naFmvCGvLY~~~s~~~~--~~~I~y~~Dt~~~~~ 766 (902)
+=|.||=+.. .+. -.|.+.||. ...|.+--+- +....+=..=|.||++-..+.. ..+-...||..|++-
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~----~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPV----TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CEEEEEeccccccccccEEEecCC----CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 5444442221 122 257788886 4568776422 3333344455899999764422 336678899999996
Q ss_pred eeeeeeecCCCCCceeeecCCCCCeEEEEeC
Q psy12803 767 LEVSLNFTNPFTNTTMITYNSRYKDLYTWDR 797 (902)
Q Consensus 767 ~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd~ 797 (902)
..+. ++.++-..+.+..+| .+||+--.
T Consensus 457 ~~~~-~M~~~R~~~g~a~~~---~~iYvvGG 483 (571)
T KOG4441|consen 457 TLIA-PMNTRRSGFGVAVLN---GKIYVVGG 483 (571)
T ss_pred eecC-CcccccccceEEEEC---CEEEEECC
Confidence 6542 333444455555554 77998643
No 495
>PRK01742 tolB translocation protein TolB; Provisional
Probab=28.92 E-value=9.6e+02 Score=27.78 Aligned_cols=132 Identities=8% Similarity=0.023 Sum_probs=66.6
Q ss_pred CccEEEEEcCCccEEEEEecCCCCCCcccccCCcccEEEEecCCccEEEEEcC-CCcEEEEeeCCCCcceeEEEEecccc
Q psy12803 651 SNSIVQFDLGSSKIINIVNLSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQIQYTWNITLLH 729 (902)
Q Consensus 651 s~~ivkydl~~~~~~~~~~~~~~~~~~~~y~~~~~~iD~avDE~GLWviY~~~-~~~ivvskld~~~l~v~~tw~t~~~k 729 (902)
..+|..+|+.+........+.. . .. .++..-.|-+++|+.. ++++-|-.+|..+=.+.+. |....
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g---~-------~~--~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~ 292 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRG---H-------NG--APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL--TSGAG 292 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCC---c-------cC--ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee--ccCCC
Confidence 3478999998875433222221 0 11 2445556777777754 5555554455443222211 11111
Q ss_pred ccccceEEEecE-EEEEeecCCCcceEEEEEeCCCCceeeeeeeecCCCCCceeeecCCCCCeEEEEeCCeEEEEEe
Q psy12803 730 KKVGDMFVVCGV-LYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNSRYKDLYTWDRGNSLTYPI 805 (902)
Q Consensus 730 ~~~~naFmvCGv-LY~~~s~~~~~~~I~y~~Dt~~~~~~~~~i~f~~~~~~~~~l~YnP~d~~LY~wd~g~~~~Y~v 805 (902)
....-+|--.|- |+++.. .... .--|.+|+.++....+ .+. . ..+.+.|..+.|++-....++.+++
T Consensus 293 ~~~~~~wSpDG~~i~f~s~-~~g~-~~I~~~~~~~~~~~~l--~~~---~--~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 293 NNTEPSWSPDGQSILFTSD-RSGS-PQVYRMSASGGGASLV--GGR---G--YSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred CcCCEEECCCCCEEEEEEC-CCCC-ceEEEEECCCCCeEEe--cCC---C--CCccCCCCCCEEEEEcCCCEEEEEC
Confidence 223445555564 343322 1122 2346677766543322 111 1 3578999999998776655555544
No 496
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=28.91 E-value=1.6e+02 Score=24.99 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred EEcCCeEEEEEecCCCCCCceEEecCC--Cc---ccccCCcc----ceeccCCcEEEEeeeeecCc
Q psy12803 303 VREGDNVRLRCVATGHPKPSIIWKTSE--NK---PITLGSWK----DSAVASSTLNFTRINRINMG 359 (902)
Q Consensus 303 v~eGe~v~L~C~a~G~P~p~v~W~k~~--~~---~~~~~~~~----~~~~~~~sL~I~~Vt~~DsG 359 (902)
|..|++++|. |.+...|+|++-+ +. +-...... ...-....|+|.+|+..++|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 5567887776 4344568998322 11 11111111 11223457888888887765
No 497
>PF13964 Kelch_6: Kelch motif
Probab=28.71 E-value=95 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCcceEEEcCeEEEe------ecCCccEEEEEcCCccEEE
Q psy12803 633 QGNAHVVFNNSFYYH------KKFSNSIVQFDLGSSKIIN 666 (902)
Q Consensus 633 ~Gtg~vvyng~lYy~------~~~s~~ivkydl~~~~~~~ 666 (902)
.+...|++++.||.- ...++.+.+||+.+++-..
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 42 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQ 42 (50)
T ss_pred ccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEE
Confidence 355678889988874 2335799999999986543
No 498
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=28.68 E-value=6.2e+02 Score=30.05 Aligned_cols=120 Identities=13% Similarity=0.208 Sum_probs=61.4
Q ss_pred eEEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCC--cccccCCcccEEEEecCCccEEEEEcCCCcEEEEeeCC
Q psy12803 637 HVVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPN--IKLYKTGYNVMDFSLDENGLWVIYGLSNNNTAVTKLDT 714 (902)
Q Consensus 637 ~vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~--~~~y~~~~~~iD~avDE~GLWviY~~~~~~ivvskld~ 714 (902)
=||.+|.+|+.... ..++.+|+++.++.=+..+...... ......+ .++.+.+ -|+.++.++ .|.-||.
T Consensus 57 Pvv~~g~vy~~~~~-g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g-----~~~~~~~-~V~v~~~~g--~v~AlD~ 127 (488)
T cd00216 57 PLVVDGDMYFTTSH-SALFALDAATGKVLWRYDPKLPADRGCCDVVNRG-----VAYWDPR-KVFFGTFDG--RLVALDA 127 (488)
T ss_pred CEEECCEEEEeCCC-CcEEEEECCCChhhceeCCCCCccccccccccCC-----cEEccCC-eEEEecCCC--eEEEEEC
Confidence 47889999997543 6899999999877433333211000 0011111 2233322 344444344 3344677
Q ss_pred CCcceeEEEEecccccc-----ccceEEEe-cEEEEEeecCC----CcceEEEEEeCCCCcee
Q psy12803 715 ATLQIQYTWNITLLHKK-----VGDMFVVC-GVLYVVDSVTD----RNTNIRFALDLYKNDLL 767 (902)
Q Consensus 715 ~~l~v~~tw~t~~~k~~-----~~naFmvC-GvLY~~~s~~~----~~~~I~y~~Dt~~~~~~ 767 (902)
+|-+ ..|+....... +..+-++. |++|+..+..+ ......|+||..|++..
T Consensus 128 ~TG~--~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 128 ETGK--QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCCC--EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 6654 45666554331 23333444 45554332111 11235689999988755
No 499
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=28.65 E-value=1.3e+03 Score=29.29 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred EEEcCeEEEeecCCccEEEEEcCCccEEEEEecCCCCCCcccc--cCCcccEEE-----------EecCCccEEEEEcCC
Q psy12803 638 VVFNNSFYYHKKFSNSIVQFDLGSSKIINIVNLSTVDPNIKLY--KTGYNVMDF-----------SLDENGLWVIYGLSN 704 (902)
Q Consensus 638 vvyng~lYy~~~~s~~ivkydl~~~~~~~~~~~~~~~~~~~~y--~~~~~~iD~-----------avDE~GLWviY~~~~ 704 (902)
+|.+|.||+ +.....|+.+|.+|.+..=+............. .++.+|.|- +....+=-|+.++.+
T Consensus 191 lvvgg~lYv-~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D 269 (764)
T TIGR03074 191 LKVGDTLYL-CTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD 269 (764)
T ss_pred EEECCEEEE-ECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC
Q ss_pred CcEEEEeeCCCCcceeEE--------EEecccccc------ccceEEEecEEEEEeecCC-----CcceEEEEEeCCCCc
Q psy12803 705 NNTAVTKLDTATLQIQYT--------WNITLLHKK------VGDMFVVCGVLYVVDSVTD-----RNTNIRFALDLYKND 765 (902)
Q Consensus 705 ~~ivvskld~~~l~v~~t--------w~t~~~k~~------~~naFmvCGvLY~~~s~~~-----~~~~I~y~~Dt~~~~ 765 (902)
++ |--||.+|=++.-. |++.+.... .+..-|+=|++|+=.+..+ ...-.-+|||..|++
T Consensus 270 g~--LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 270 AR--LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred Ce--EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Q ss_pred ee-eeeee-------------ecCCCCCc-eeeecCCCCCeEEE
Q psy12803 766 LL-EVSLN-------------FTNPFTNT-TMITYNSRYKDLYT 794 (902)
Q Consensus 766 ~~-~~~i~-------------f~~~~~~~-~~l~YnP~d~~LY~ 794 (902)
.. ..+.- |..-..+. ..+.|+|....+|+
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ 391 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL 391 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE
No 500
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=27.81 E-value=1.3e+02 Score=32.81 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred CCceEEEecCCCCCceEeecChhhhcccCCcceEeCcCCCCCcceEEE-cCeEEEeecCCccEEEEEcCCccEEEEEecC
Q psy12803 593 NSEKFWMTTDSDPTHLNEYKDKDMFKSDAKSWTYNLKEPFQGNAHVVF-NNSFYYHKKFSNSIVQFDLGSSKIINIVNLS 671 (902)
Q Consensus 593 ~~~~~~~~~~~~~~~~~ey~~~~~~~~~~~~~~~~l~~~~~Gtg~vvy-ng~lYy~~~~s~~ivkydl~~~~~~~~~~~~ 671 (902)
+...+|+.++++. ..|.|-.+|..-+.-....-..+..--+-.-| ||.+|=|...++.|+|.|..|..|+.+..+.
T Consensus 138 dg~~Li~SDGS~~---L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 138 DGKRLIMSDGSSR---LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp CSSCEEEE-SSSE---EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred CCCEEEEECCccc---eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh
Done!