RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12803
(902 letters)
>gnl|CDD|216924 pfam02191, OLF, Olfactomedin-like domain.
Length = 250
Score = 239 bits (613), Expect = 7e-73
Identities = 90/262 (34%), Positives = 135/262 (51%), Gaps = 18/262 (6%)
Query: 553 VYAVGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWMTTDSDPTHLNEYK 612
+ +V KPV K K +GAWMKDP P S + + + S T L E++
Sbjct: 2 LASVSKPVTVKKAGYK-----------YGAWMKDPLPPSDDDKVYVTDGYSGDT-LFEFR 49
Query: 613 DKDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGSSKIIN---IVN 669
+ + FK TY L P+QG HVV+N S YY++ S +I+++DL + ++ + N
Sbjct: 50 NLEDFKQGRPFKTYRLPYPWQGTGHVVYNGSLYYNRYNSRTIIKYDLTTRTVVATRVLPN 109
Query: 670 LSTVDPNIKLYKTGYNVMDFSLDENGLWVIYGL--SNNNTAVTKLDTATLQIQYTWNITL 727
+ G +D ++DENGLWVIY +N N ++KLD TL ++ TW+
Sbjct: 110 AGYNNTFP-YSWGGKTDIDLAVDENGLWVIYATEENNGNIVLSKLDPETLDVEQTWDTGY 168
Query: 728 LHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITYNS 787
+ G+ F+VCGVLYV S + R+T I +A D S+ F N + +M+ YN
Sbjct: 169 PKRSAGNAFMVCGVLYVTRSYSLRDTRIFYAYDTSTGTEEAPSIPFPNRYGYISMLDYNP 228
Query: 788 RYKDLYTWDRGNSLTYPIRYHE 809
R + LY WD G LTY +R+
Sbjct: 229 RDRKLYAWDNGYQLTYDLRFKP 250
>gnl|CDD|128580 smart00284, OLF, Olfactomedin-like domains.
Length = 255
Score = 148 bits (376), Expect = 3e-40
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 24/260 (9%)
Query: 556 VGKPVFHKSTSMKKESSGKPVDVIFGAWMKDPHPTSGNSEKFWM--TTDSDPTHLNEYKD 613
+ KPV +++ GK GAWMKDP + +W + EY
Sbjct: 6 ISKPV-----TLQTSWKGK-----SGAWMKDPLWNTTKKSLYWYMPLNTRVLRSVREYSS 55
Query: 614 KDMFKSDAKSWTYNLKEPFQGNAHVVFNNSFYYHKKFSNSIVQFDLGS-----SKIINIV 668
F+ + L QG VV+N S Y++K S+ I +FDL + ++N
Sbjct: 56 MSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGA 115
Query: 669 NLSTVDPNIKLYK-TGYNVMDFSLDENGLWVIYGLSNNNTA--VTKLDTATLQIQYTWNI 725
+ P Y G++ +D ++DENGLWVIY N ++KL+ ATL I+ TW
Sbjct: 116 GYNNRFP----YAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT 171
Query: 726 TLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTNTTMITY 785
T + + F++CG+LYV S+ + + +A D + + F N + +M+ Y
Sbjct: 172 TYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDY 231
Query: 786 NSRYKDLYTWDRGNSLTYPI 805
N + LY W+ G+ + Y I
Sbjct: 232 NPNDRKLYAWNNGHLVHYDI 251
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies).
Members of this family belong to the collagen
superfamily. Collagens are generally extracellular
structural proteins involved in formation of connective
tissue structure. The alignment contains 20 copies of
the G-X-Y repeat that forms a triple helix. The first
position of the repeat is glycine, the second and third
positions can be any residue but are frequently proline
and hydroxyproline. Collagens are post translationally
modified by proline hydroxylase to form the
hydroxyproline residues. Defective hydroxylation is the
cause of scurvy. Some members of the collagen
superfamily are not involved in connective tissue
structure but share the same triple helical structure.
Length = 60
Score = 65.6 bits (161), Expect = 2e-13
Identities = 33/66 (50%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 140 GAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRD 199
G PG GPPGP G P G GP G G PGP G PG G GP G G P G G
Sbjct: 1 GPPGPPGPPGPPGPP---GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP---GPPGAP 54
Query: 200 GLPGEP 205
G PG P
Sbjct: 55 GAPGPP 60
Score = 64.4 bits (158), Expect = 4e-13
Identities = 29/60 (48%), Positives = 29/60 (48%)
Query: 122 GEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKR 181
G G G G G G G PG GPPGP G PG G GP G G PGP G PG G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 64.0 bits (157), Expect = 6e-13
Identities = 31/58 (53%), Positives = 31/58 (53%)
Query: 134 GERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPG 191
G G G PG GPPGP G PG G GP G G PGP G PG G GP G G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58
Score = 63.7 bits (156), Expect = 7e-13
Identities = 29/61 (47%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPK 184
G G G G G G PG PPGP G PG G GP G G PGP G PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPG---PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57
Query: 185 G 185
G
Sbjct: 58 G 58
Score = 63.3 bits (155), Expect = 9e-13
Identities = 28/59 (47%), Positives = 28/59 (47%)
Query: 111 PPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYP 169
PPG GP G G G G G G G G PG GPPGP G PG G G G G P
Sbjct: 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 62.1 bits (152), Expect = 3e-12
Identities = 30/60 (50%), Positives = 30/60 (50%)
Query: 131 GVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYP 190
G G G G PG GPPGP G PG G GP G G PGP G PG G G G G P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 61.7 bits (151), Expect = 3e-12
Identities = 29/59 (49%), Positives = 29/59 (49%)
Query: 170 GPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 228
GP G PG G GP G G PG G G G PG PG G PG G G PG G PG
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 52.9 bits (128), Expect = 4e-09
Identities = 26/60 (43%), Positives = 26/60 (43%)
Query: 191 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNR 250
G G G G PG PG G PG G G PG G PG G PG G G G G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGPP 60
Score = 52.1 bits (126), Expect = 7e-09
Identities = 28/59 (47%), Positives = 28/59 (47%)
Query: 182 GPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGE 240
GP G G PG G G G PG PG G PG G G PG G PG G PG G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 51.7 bits (125), Expect = 1e-08
Identities = 28/63 (44%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 197 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGIN 256
G G PG PG G PG G PG G PG G PG G G G GP G G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGP---PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57
Query: 257 GVP 259
G P
Sbjct: 58 GPP 60
Score = 50.6 bits (122), Expect = 3e-08
Identities = 22/48 (45%), Positives = 22/48 (45%)
Query: 215 GMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
G G PG G PG G PG G G G GP G G G G PG P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP 48
Score = 49.8 bits (120), Expect = 5e-08
Identities = 26/59 (44%), Positives = 26/59 (44%)
Query: 194 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGK 252
G G G PG PG G PG G G PG G PG G PG G G G G G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPGP 59
Score = 49.8 bits (120), Expect = 6e-08
Identities = 26/57 (45%), Positives = 26/57 (45%)
Query: 206 GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPGTP 262
G G PG G G PG G PG G PG G G G GP G G G G PG P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAP 57
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 50.6 bits (121), Expect = 5e-08
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
V G + TL CE P W G L+ G ++S+S S L ISNV
Sbjct: 6 VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSTST-----LTISNVT 59
Query: 441 ISDFDTYRCISKNEVDIAKGSLIL 464
D TY C + N A L
Sbjct: 60 PEDSGTYTCAATNSSGSASSGTTL 83
Score = 47.5 bits (113), Expect = 7e-07
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAVASSTLNFTRIN 354
+ V+EG++V L C A+G P P + W K + S S ++STL + +
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59
Query: 355 RINMGAYMCLADN 367
+ G Y C A N
Sbjct: 60 PEDSGTYTCAATN 72
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 50.6 bits (121), Expect = 5e-08
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 381 VPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVN 440
V G + TL CE P W G L+ G ++S+S S L ISNV
Sbjct: 6 VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESG-RFSVSRSGSTST-----LTISNVT 59
Query: 441 ISDFDTYRCISKNEVDIAKGSLIL 464
D TY C + N A L
Sbjct: 60 PEDSGTYTCAATNSSGSASSGTTL 83
Score = 47.5 bits (113), Expect = 7e-07
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 298 SSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLG---SWKDSAVASSTLNFTRIN 354
+ V+EG++V L C A+G P P + W K + S S ++STL + +
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59
Query: 355 RINMGAYMCLADN 367
+ G Y C A N
Sbjct: 60 PEDSGTYTCAATN 72
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 49.2 bits (118), Expect = 2e-07
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 299 SPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGS-----WKDSAVASSTLNFTRI 353
+ V+EG++ R C TG P P++ W + +P+ ++ + TL + +
Sbjct: 8 KDVEVQEGESARFTCTVTGDPDPTVSW-FKDGQPLRSSDRFKVTYEGG---TYTLTISNV 63
Query: 354 NRINMGAYMCLADN 367
+ G Y C+A N
Sbjct: 64 QPDDEGKYTCVATN 77
Score = 48.8 bits (117), Expect = 3e-07
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 370 PQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQ 429
P+ + + V V G +A C V P W F DG + ++ ++
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSW-FKDGQPL-RSSDRFKVTYEGGTY-- 56
Query: 430 YIMQLNISNVNISDFDTYRCISKNEV 455
L ISNV D Y C++ N
Sbjct: 57 ---TLTISNVQPDDEGKYTCVATNSA 79
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal
peptide, three extracellular Ig-like modules, a
transmembrane segment, and a short intracellular domain.
FGFRL1 is expressed preferentially in skeletal tissues.
Similar to FGF receptors, the expressed protein
interacts specifically with heparin and with FGF2.
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 82
Score = 47.1 bits (112), Expect = 1e-06
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G +VRL+CVA+G+P+P I W +NKP+T +S TL+ + + G Y C
Sbjct: 9 GSSVRLKCVASGNPRPDITW-LKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHV 67
Query: 366 DNVPPQI 372
N +I
Sbjct: 68 SNRAGEI 74
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 44.7 bits (106), Expect = 4e-06
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
EG +V L C A G+P P+I W + KP L + STL ++ + G Y C+
Sbjct: 1 EGQSVTLTCPAEGNPVPNITW-LKDGKP--LPESNRFVASGSTLTIKSVSLEDSGLYTCV 57
Query: 365 ADN 367
A+N
Sbjct: 58 AEN 60
Score = 34.7 bits (80), Expect = 0.013
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 383 IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNIS 442
G++ TL C E P+ W DG + S V GS L I +V++
Sbjct: 1 EGQSVTLTCPAEGNPVPNITWLK-DGKPLPE-----SNRFVASGST-----LTIKSVSLE 49
Query: 443 DFDTYRCISKNEV 455
D Y C+++N
Sbjct: 50 DSGLYTCVAENSA 62
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 44.7 bits (106), Expect = 6e-06
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 295 IFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLN---FT 351
+ + SP VV EG++V L C A G+P P+ W KD SS+ N
Sbjct: 3 VLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWY------------KDGVPLSSSQNGFFTP 50
Query: 352 RINRINMGAYMCLADN 367
++ + G Y C+A N
Sbjct: 51 NVSAEDSGTYTCVASN 66
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 42.1 bits (98), Expect = 4e-05
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 309 VRLRCVATGHPKPSIIWK-----TSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMC 363
V L C+A+G P P+I W + + S + ++ SSTL + + + G Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 364 LADN 367
+A N
Sbjct: 61 VASN 64
Score = 42.1 bits (98), Expect = 5e-05
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
TL C P W L + S G+ L ISNV + D T
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSR---GTSSGSSTLTISNVTLEDSGT 57
Query: 447 YRCISKNEVDIAKGSL 462
Y C++ N S+
Sbjct: 58 YTCVASNSAGTVSASV 73
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 42.2 bits (99), Expect = 6e-05
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 306 GDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
G ++R C A+G+P+P+ W K + L S V + L T+++ + G Y C+
Sbjct: 14 GSSLRWECKASGNPRPAYRWLKNGQ----PLASENRIEVEAGDLRITKLSLSDSGMYQCV 69
Query: 365 ADN 367
A+N
Sbjct: 70 AEN 72
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 40.8 bits (95), Expect = 1e-04
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 369 PPQILIRNRRVGVPIGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSY 428
P I + + V G TL C E P + +G SIS G
Sbjct: 1 KPVITV-SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNG----------SISGGSGGLG 49
Query: 429 QYIMQLNISNVNISDFDTYRCISKN 453
L +S+V D TY C++ N
Sbjct: 50 SSGSTLTLSSVTSEDSGTYTCVASN 74
Score = 33.9 bits (77), Expect = 0.042
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 294 HIFSSSPIVVREGDNVRLRCVATGHP-KPSIIWKTSENKPITLGSWKDSAVASSTLNFTR 352
I S V G V L C A G P P+I W + + G S STL +
Sbjct: 3 VITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSS---GSTLTLSS 59
Query: 353 INRINMGAYMCLADN 367
+ + G Y C+A N
Sbjct: 60 VTSEDSGTYTCVASN 74
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 45.0 bits (106), Expect = 1e-04
Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 8/156 (5%)
Query: 116 GPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIP 175
P G E+ + + PP P PG P+ P Q
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSS 165
Query: 176 GDEGKRGPKGDMGYPGRIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 232
+ + P D E P ++ D PG+ P P
Sbjct: 166 FLQPSHEDSPEEPEPPT-SEPEPDSPGPPQSETPTSSPPPQSPPDE-PGEPQSPTPQQAP 223
Query: 233 GTNGTNGEKGMTGPRGNRGKSGINGVPGTPAICAYK 268
N + P +Y
Sbjct: 224 SPNTQQAVEHEDEPTEP---EREGPPFPGHRSHSYT 256
Score = 40.3 bits (94), Expect = 0.004
Identities = 19/136 (13%), Positives = 30/136 (22%), Gaps = 1/136 (0%)
Query: 125 GAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPK 184
+ E + GEK G GP G P G P + P+
Sbjct: 70 ESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129
Query: 185 GDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTNGEKGMT 244
+ P EP + +D E
Sbjct: 130 SPASHSPP-PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Query: 245 GPRGNRGKSGINGVPG 260
P + ++ + P
Sbjct: 189 SPGPPQSETPTSSPPP 204
Score = 35.7 bits (82), Expect = 0.096
Identities = 14/130 (10%), Positives = 21/130 (16%), Gaps = 4/130 (3%)
Query: 120 QKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEG 179
+ GE +G+ G G E P G P
Sbjct: 80 RHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPS 139
Query: 180 KRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 236
G P + + P
Sbjct: 140 PPSHPGP-HEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETP 198
Query: 237 TNGEKGMTGP 246
T+ + P
Sbjct: 199 TSSPPPQSPP 208
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the
immunoglobulin superfamily are found in hundreds of
proteins of different functions. Examples include
antibodies, the giant muscle kinase titin and receptor
tyrosine kinases. Immunoglobulin-like domains may be
involved in protein-protein and protein-ligand
interactions. The Pfam alignments do not include the
first and last strand of the immunoglobulin-like domain.
Length = 62
Score = 38.7 bits (90), Expect = 5e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSW---KDSAVASSTLNFTRINRINMGAYM 362
G +V L C +G P+ + W E K + + ++ V+S TL + + + G Y
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFK-EGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59
Query: 363 C 363
C
Sbjct: 60 C 60
Score = 31.4 bits (71), Expect = 0.23
Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 384 GRTATLECEVEAFPLSVRYWEFIDGTLIE-HDGVKYSISDVDKGSYQYIMQLNISNVNIS 442
G + TL C V P W L E L ISNV
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSI-------TLTISNVTPE 53
Query: 443 DFDTYRC 449
D TY C
Sbjct: 54 DSGTYTC 60
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 39.5 bits (92), Expect = 6e-04
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 369 PPQILIRNRRVGVP--IGRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKG 426
PP I R V +G++ TL C+ + FP W DG IE KYS ++ G
Sbjct: 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWT-KDGEPIESGEEKYSFNE--DG 57
Query: 427 SYQYIMQLNISNVNISDFDTYRCISKNEVDIAKGSLIL 464
S ++ I +V+ D Y CI++N+ + + L
Sbjct: 58 S-----EMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90
Score = 36.4 bits (84), Expect = 0.008
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVA 344
PPTI + +++ G +V L C A G P+P++ W T + +PI G K S
Sbjct: 1 PPTIRARQSEVNAT---ANLGQSVTLACDADGFPEPTMTW-TKDGEPIESGEEKYSFNED 56
Query: 345 SSTLNFTRINRINMGAYMCLADN 367
S + +++++ Y C+A+N
Sbjct: 57 GSEMTILDVDKLDEAEYTCIAEN 79
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 38.4 bits (89), Expect = 0.001
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 307 DNVRLRCVATGHPKPSIIWKT------SENKPITLGSWKDSAVASSTLNFTRINRINMGA 360
+ + L C A+G P PSI W+T SE K + S S+L I + G
Sbjct: 18 EQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGE 77
Query: 361 YMCLADN 367
Y+C A N
Sbjct: 78 YLCTASN 84
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 37.6 bits (87), Expect = 0.002
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
EG V C A G+P+P I W T +++ + ++S TL +R+ + G Y C
Sbjct: 1 EGQTVDFLCEAQGYPQPVIAW-TKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQ 58
Query: 365 ADNV 368
A N+
Sbjct: 59 AVNI 62
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 37.4 bits (87), Expect = 0.003
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPIT----LGSWKDSAVASSTLNFTRINRINMGAY 361
G VRL+C A+G+P+P+I W + KP +G +K TL + + G Y
Sbjct: 9 GSTVRLKCPASGNPRPTITW-LKDGKPFKKEHRIGGYK-VRKKKWTLILESVVPSDSGKY 66
Query: 362 MCLADN 367
C+ +N
Sbjct: 67 TCIVEN 72
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 37.1 bits (86), Expect = 0.004
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G NV L C A G+P P I W+ + S + +++ + L I + G Y C A
Sbjct: 16 GQNVTLECFALGNPVPQIKWRKVDGSMP---SSAEISMSGAVLKIPNIQFEDEGTYECEA 72
Query: 366 DNV 368
+N+
Sbjct: 73 ENI 75
>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig4_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 90
Score = 36.9 bits (85), Expect = 0.005
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKD-------SAVASSTLNFTRINRINM 358
G V +C ATG+P+P+I W+ E L S++ S + L T + R ++
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQ-KEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDV 59
Query: 359 GAYMCLADNVPPQILIR 375
G Y+C NV IL +
Sbjct: 60 GYYICQTLNVAGSILTK 76
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 36.8 bits (85), Expect = 0.005
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 286 PPTIVGSEHIFSSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS---A 342
PP IV EH S ++V +GD L C A G P P+I W + T S
Sbjct: 1 PPRIV--EH---PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIV 55
Query: 343 VASSTLNFTRI-----NRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATLE 390
+ S +L F R+ R + G Y+C+A N +G + R A+LE
Sbjct: 56 LPSGSLFFLRVVHGRKGRSDEGVYVCVAHN----------SLGEAVSRNASLE 98
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 35.8 bits (83), Expect = 0.009
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTS----ENKPITLGSWKDSAVASSTLNFTRINRINMGAY 361
G+ RL C A G P+P+I W+ + E P V TL + + + Y
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRR----VDGGTLILSNVQPNDTAVY 56
Query: 362 MCLADNVPPQILI 374
C A NV +L
Sbjct: 57 QCNASNVHGYLLA 69
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 34.3 bits (79), Expect = 0.023
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 309 VRLRCVATGHPKPSIIWKTSENK-PITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
V +C G P P+++W+ + + P + + +L + + G+Y C A+N
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKG----RAEILDDKSLKIRNVTAGDEGSYTCEAEN 56
Query: 368 V 368
+
Sbjct: 57 M 57
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 34.8 bits (80), Expect = 0.028
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 305 EGDNVRLRCVATGHPKPSIIWKTS------ENKPITLGSWKDSAVASSTLNFTRINRINM 358
E + + L C A G P P I W+ + +K + S+L + +
Sbjct: 15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDA 74
Query: 359 GAYMCLADN 367
G Y C A N
Sbjct: 75 GRYDCEASN 83
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 34.1 bits (78), Expect = 0.030
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ-LNISNVNISDFDT 446
LEC E P +W+ IDG L ++ + L + NV SD
Sbjct: 2 VLECIAEGLPTPEVHWDRIDGPLSP-----------NRTKKLNNNKTLQLDNVLESDDGE 50
Query: 447 YRCISKNEVDIAKGS 461
Y C ++N A+
Sbjct: 51 YVCTAENSEGSARHH 65
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to the
second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 34.3 bits (79), Expect = 0.034
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 299 SPIVVREGDNVRLRCVA-TGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRIN 357
S V G+ L C GHP+P++ W+ + +P+ L + + V L + +
Sbjct: 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWR-KDGQPLNLDNERVRIVDDGNLLIAEARKSD 62
Query: 358 MGAYMCLADNVPPQILIRNRRVGVPIGRTATL 389
G Y C+A N+ VG A L
Sbjct: 63 EGTYKCVATNM----------VGERESAAARL 84
Score = 31.2 bits (71), Expect = 0.36
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 374 IRNRRVGVPIGRTATLECEV-EAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIM 432
+ V +G A LEC P W DG + D + I VD G+
Sbjct: 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWR-KDGQPLNLDNERVRI--VDDGN----- 52
Query: 433 QLNISNVNISDFDTYRCISKNEV 455
L I+ SD TY+C++ N V
Sbjct: 53 -LLIAEARKSDEGTYKCVATNMV 74
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 34.2 bits (78), Expect = 0.038
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 306 GDNVRLRCVATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCL 364
G NV L C A G+P P I W K E P T + +++ + L I + G Y C
Sbjct: 16 GQNVTLECFALGNPVPVIRWRKILEPMPAT----AEISMSGAVLKIFNIQPEDEGTYECE 71
Query: 365 ADNV 368
A+N+
Sbjct: 72 AENI 75
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 33.2 bits (76), Expect = 0.067
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G LRC A G P+P+I W + + K I+ S + + TL+ + G++ C+A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSS-RTLVYDNGTLDILITTVKDTGSFTCIA 59
Query: 366 DN 367
N
Sbjct: 60 SN 61
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 33.0 bits (75), Expect = 0.074
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 387 ATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDT 446
A+L C E PL W +G I K ++ + GS +L+ISNV D
Sbjct: 1 ASLRCHAEGIPLPRLTW-LKNGMDITPKLSK-QLTLIANGS-----ELHISNVRYEDTGA 53
Query: 447 YRCISKNEVDIAK--GSLILFES 467
Y CI+KNE + + SL + +S
Sbjct: 54 YTCIAKNEAGVDEDISSLFVEDS 76
Score = 32.2 bits (73), Expect = 0.15
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 311 LRCVATGHPKPSIIW-KTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
LRC A G P P + W K + L S L+ + + + GAY C+A N
Sbjct: 3 LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKN 60
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 32.3 bits (74), Expect = 0.12
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 388 TLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ-LNISNVNISDFDT 446
LEC E P W I G L D+ ++ + L I NV+ D
Sbjct: 2 LLECIAEGLPTPEISWIKIGGELPA-----------DRTKFENFNKTLKIDNVSEEDDGE 50
Query: 447 YRCISKNEVDIAKG 460
YRC + N + A+
Sbjct: 51 YRCTASNSLGSARH 64
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
IG-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 32.3 bits (73), Expect = 0.15
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDS-AVASSTLNFTRINRINMGAYMCL 364
G++ L C A G+PKPSI W T+ PI + S V T+ F+++ + Y C
Sbjct: 1 GEDGTLICRANGNPKPSISWLTN-GVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCN 59
Query: 365 ADN 367
A N
Sbjct: 60 ASN 62
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 75
Score = 32.2 bits (73), Expect = 0.15
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 310 RLRCVATGHPKPSIIWK 326
RL C ATGHP P I W+
Sbjct: 2 RLECAATGHPTPQIAWQ 18
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 32.0 bits (73), Expect = 0.18
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD 443
G +EC+ +A P W L I GS L I NV SD
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSS----RICIWPDGS------LEILNVTKSD 50
Query: 444 FDTYRCISKNEVDIAKGSLIL 464
Y C ++N A + L
Sbjct: 51 EGKYTCFAENFFGKANSTGSL 71
Score = 30.1 bits (68), Expect = 0.74
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G +V + C PKP+I W S+ + S + +L + + + G Y C A
Sbjct: 1 GGDVIIECKPKAAPKPTISW--SKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFA 58
Query: 366 DNV 368
+N
Sbjct: 59 ENF 61
>gnl|CDD|222306 pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This
region is likely to have a protease inhibitory function
(personal obs:C Yeats). The name is derived from
Peptidase & Bacillus subtilis YPEB.
Length = 83
Score = 32.2 bits (74), Expect = 0.19
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 678 KLYKTGYNVMDFSLDENGLWVIYGLS-NNNTAVTKLDTATLQI 719
KL GY V +D+ G + +YG + LD AT ++
Sbjct: 37 KLEAQGYKVKKIEVDDGGCYEVYGRDKDGKKVEIYLDPATGEV 79
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain
II (D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2. Perlecan
consists of five domains. Domain I has three putative
heparan sulfate attachment sites; domain II has four LDL
receptor-like repeats, and one Ig-like repeat; domain
III resembles the short arm of laminin chains; domain IV
has multiple Ig-like repeats (21 repeats in human
perlecan); and domain V resembles the globular G domain
of the laminin A chain and internal repeats of EGF.
Perlecan may participate in a variety of biological
functions including cell binding, LDL-metabolism,
basement membrane assembly and selective permeability,
calcium binding, and growth- and neurite-promoting
activities.
Length = 78
Score = 31.7 bits (72), Expect = 0.23
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASS-------TLNFTRINRINM 358
G+ V CVATG P P I W+ + G DSA S TL + +
Sbjct: 1 GETVEFTCVATGVPTPIINWR------LNWGHVPDSARVSITSEGGYGTLTIRDVKESDQ 54
Query: 359 GAYMCLADNV 368
GAY C A N
Sbjct: 55 GAYTCEAINT 64
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 32.1 bits (73), Expect = 0.24
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 26/106 (24%)
Query: 296 FSSSP--IVVREGDNVRLRCVATGHPKPSIIWKTS----------ENKPITLGSWKDSAV 343
F S P IV G V L C A G P P I WK + + GS ++V
Sbjct: 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61
Query: 344 ASSTLNFTRINRINMGAYMCLADNVPPQILIRNRRVGVPIGRTATL 389
S + N+ + G Y C+A +N +G + RTA L
Sbjct: 62 VHS-----KHNKPDEGFYQCVA---------QNDSLGSIVSRTARL 93
>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain
of human titin C terminus and similar proteins.
Ig5_Titin_like: domain similar to the M5, fifth
immunoglobulin (Ig)-like domain from the human titin C
terminus. Titin (also called connectin) is a fibrous
sarcomeric protein specifically found in vertebrate
striated muscle. Titin is gigantic; depending on isoform
composition it ranges from 2970 to 3700 kDa, and is of a
length that spans half a sarcomere. Titin largely
consists of multiple repeats of Ig-like and fibronectin
type 3 (FN-III)-like domains. Titin connects the ends of
myosin thick filaments to Z disks and extends along the
thick filament to the H zone, and appears to function
similar to an elastic band, keeping the myosin filaments
centered in the sarcomere during muscle contraction or
stretching.
Length = 92
Score = 31.6 bits (71), Expect = 0.34
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIW-------KTSENKPITLGSWKDSAVASSTLNFTRI 353
+ V EG++ R C G P P++ W +S+ IT +K ST +++
Sbjct: 13 LTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYK------STFEISKV 66
Query: 354 NRINMGAYMCLADN 367
+ G Y + +N
Sbjct: 67 QMSDEGNYTVVVEN 80
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 31.3 bits (71), Expect = 0.42
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 301 IVVREGDNVRLRCVATGHPKPSIIWKTSENKPI-TLGSWKDSAVASSTLNFTRINRINMG 359
VV EG +RC A G P P + W + I T ++ V L + I
Sbjct: 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQT 69
Query: 360 AYMCLADNV 368
C A+N
Sbjct: 70 TVTCTAENP 78
Score = 30.6 bits (69), Expect = 0.77
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 384 GRTATLECEVEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISD 443
G TAT+ C E PL W I G LI ++ I L +SN+
Sbjct: 15 GGTATIRCTAEGSPLPKVEW-IIAG-LIVIQTRTDTLETTVD-----IYNLQLSNITSET 67
Query: 444 FDTYRCISKNEVDIAKGSLIL 464
T C ++N V A S+ +
Sbjct: 68 QTTVTCTAENPVGQANVSVQV 88
>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain
of palladin. Ig_Palladin_C: C-terminal immunoglobulin
(Ig)-like domain of palladin. Palladin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to this family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Palladin binds to alpha-actinin ezrin,
vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP,
mDia interacting protein), and Src. Palladin also binds
F-actin directly, via its Ig3 domain. Palladin is
expressed as several alternatively spliced isoforms,
having various combinations of Ig-like domains, in a
cell-type-specific manner. It has been suggested that
palladin's different Ig-like domains may be specialized
for distinct functions.
Length = 75
Score = 30.8 bits (69), Expect = 0.46
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 309 VRLRCVATGHPKPSIIWKTSENKPIT 334
VRL C +G P P I WK EN+ +T
Sbjct: 1 VRLECRVSGVPHPQIFWK-KENESLT 25
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 33.4 bits (76), Expect = 0.59
Identities = 35/164 (21%), Positives = 45/164 (27%), Gaps = 15/164 (9%)
Query: 103 CNSTKEYCPPGLQGPIGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGP 162
S K LQG G I A + +G RG + P GP P G + G
Sbjct: 52 DMSKKAAQQQVLQGGQGMPDPINALQNLTGQGTRGPQMGPMGPGPGRPMG-----QQMGG 106
Query: 163 KGDMGYPG------PQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGIPGRNGM 216
G Q G G GP G + G+ G G P +
Sbjct: 107 PGTASNLLQSLNVRGQMPMGAAGM-GPHQMSRV-GTMQPGGQAG-GMMQQSSGQPQ-SQQ 162
Query: 217 DGIPGKDGLPGKDGIPGTNGTNGEKGMTGPRGNRGKSGINGVPG 260
G + G N G+ G+ G G
Sbjct: 163 PNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGG 206
>gnl|CDD|143950 pfam00187, Chitin_bind_1, Chitin recognition protein.
Length = 38
Score = 29.3 bits (66), Expect = 0.74
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 101 GFCNSTKEYCPPGLQGP 117
G+C ST++YC PG Q
Sbjct: 21 GWCGSTEDYCGPGCQSQ 37
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 30.2 bits (68), Expect = 0.98
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 26/79 (32%)
Query: 303 VREGDNVRLRCVATGHPKPSIIWKTSENKPIT----LGSWK----------DSAVASSTL 348
V + V+ RC A G+P P++ W K +G +K +S V S
Sbjct: 6 VPAANTVKFRCPAAGNPTPTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--- 61
Query: 349 NFTRINRINMGAYMCLADN 367
+ G Y C+ +N
Sbjct: 62 --------DKGNYTCVVEN 72
>gnl|CDD|131020 TIGR01965, VCBS_repeat, VCBS repeat. This domain of about 100
residues is found multiple (up to 35) copies in long
proteins from several species of Vibrio, Colwellia,
Bradyrhizobium, and Shewanella (hence the name VCBS) and
in smaller copy numbers in proteins from several other
bacteria. The large protein size and repeat copy
numbers, species distribution, and suggested activities
of several member proteins suggests a role for this
domain in adhesion.
Length = 99
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 688 DFSLDENGLWVIYGLSNNNTAV-------TKLDTATLQ 718
FS+D +G W Y N+ TAV T DT T+
Sbjct: 28 TFSIDADGQWT-YQADNSQTAVQALKAGETLTDTFTVT 64
>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV). IgV:
Immunoglobulin variable domain (IgV). Members of the IgV
family are components of immunoglobulin (Ig) and T cell
receptors. The basic structure of Ig molecules is a
tetramer of two light chains and two heavy chains linked
by disulfide bonds. In Ig, each chain is composed of one
variable domain (IgV) and one or more constant domains
(IgC); these names reflect the fact that the variability
in sequences is higher in the variable domain than in
the constant domain. Within the variable domain, there
are regions of even more variability called the
hypervariable or complementarity-determining regions
(CDRs) which are responsible for antigen binding. A
predominant feature of most Ig domains is the disulfide
bridge connecting 2 beta-sheets with a tryptophan
residue packed against the disulfide bond.
Length = 105
Score = 30.4 bits (69), Expect = 1.1
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 19/85 (22%)
Query: 381 VPIGRTATLECEVEAFPLSVR-YW---------EFI----DGTLIEHDGVK--YSISDVD 424
V G + TL C S +W E + GVK +S + D
Sbjct: 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGT-RD 61
Query: 425 KGSYQYIMQLNISNVNISDFDTYRC 449
+ L IS++ D Y C
Sbjct: 62 SSKSSFT--LTISSLQPEDSAVYYC 84
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 32.7 bits (74), Expect = 1.1
Identities = 21/93 (22%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 143 GVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRIGLDGR---- 198
G P G G + PG QG G G P
Sbjct: 376 GGASAPSGSAAEG--PASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPR 433
Query: 199 ---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 228
D P P GIP R +P +PG
Sbjct: 434 VPWDDAPPAPPRSGIPPR-PAPRMPEASPVPGA 465
>gnl|CDD|237886 PRK15042, pduD, propanediol dehydratase medium subunit;
Provisional.
Length = 219
Score = 31.9 bits (73), Expect = 1.2
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 443 DFDTYRCISKNEVDIAKGSLILFESNAKTPVPTEKEQ 479
+TYR I KN AKG ES PVPT +Q
Sbjct: 156 TLETYRAIGKNAARYAKG-----ES--PQPVPTLNDQ 185
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 32.0 bits (73), Expect = 1.2
Identities = 17/58 (29%), Positives = 18/58 (31%)
Query: 136 RGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGRI 193
G G G G G G G G G +G G G RG G G I
Sbjct: 1 GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKVI 58
Score = 31.2 bits (71), Expect = 2.4
Identities = 19/60 (31%), Positives = 22/60 (36%)
Query: 133 KGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQGIPGDEGKRGPKGDMGYPGR 192
G G +G G G +G G G RG G G G G G GP + P R
Sbjct: 4 GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKVIVVPHR 63
>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_3: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 81
Score = 29.4 bits (66), Expect = 1.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 306 GDNVRLRCVATGHPKPSIIWK 326
G+ C TG P P I W+
Sbjct: 1 GETASFHCDVTGRPPPEITWE 21
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 29.1 bits (65), Expect = 1.8
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 309 VRLRCVATGHPKPSIIWKTSENK------PITLGSWKDSAVASSTLNFTRINRINMGAYM 362
V L C A G+P P+I+WK S+ + + + +++ +L + + G Y+
Sbjct: 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60
Query: 363 CLADN 367
C N
Sbjct: 61 CKVSN 65
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit.
Members of this family include high molecular weight
subunits of glutenin. This group of gluten proteins is
thought to be largely responsible for the elastic
properties of gluten, and hence, doughs. Indeed,
glutenin high molecular weight subunits are classified
as elastomeric proteins, because the glutenin network
can withstand significant deformations without breaking,
and return to the original conformation when the stress
is removed. Elastomeric proteins differ considerably in
amino acid sequence, but they are all polymers whose
subunits consist of elastomeric domains, composed of
repeated motifs, and non-elastic domains that mediate
cross-linking between the subunits. The elastomeric
domain motifs are all rich in glycine residues in
addition to other hydrophobic residues. High molecular
weight glutenin subunits have an extensive central
elastomeric domain, flanked by two terminal non-elastic
domains that form disulphide cross-links. The central
elastomeric domain is characterized by the following
three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It
possesses overlapping beta-turns within and between the
repeated motifs, and assumes a regular helical secondary
structure with a diameter of approx. 1.9 nm and a pitch
of approx. 1.5 nm.
Length = 779
Score = 32.0 bits (71), Expect = 1.8
Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 109 YCPPGLQGP-IGQKGEIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEGKRGPKGDMG 167
+ P LQ P GQ+ + G G++ +G G QG +G++G + G
Sbjct: 478 HDPASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQQGQQPAQGQQGQQLGQG 537
Query: 168 YPGPQGIPGDEGKRGPKGDMGYPGRIGLDGRDGLPGEPGLDGI----PGRNGMDGIPGKD 223
G Q G +G +G G+ G G G P +G PG+
Sbjct: 538 QQGQQPGQGQHPAQGEQGQQPGQGQQGQQPGQGQQPGQGQPWYYPTSPQESGQGQQPGQW 597
Query: 224 GLPGKDGIPGTNGTNGEKGMTGPRGNRGKSG 254
PG+ PG G G + + +G+ G
Sbjct: 598 QQPGQWQQPG-QGQPGYYLTSPLQLGQGQQG 627
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like:
fourth immunoglobulin (Ig)-like domain of the L1 cell
adhesion molecule (CAM). L1 is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 29.1 bits (65), Expect = 2.0
Identities = 18/69 (26%), Positives = 25/69 (36%)
Query: 306 GDNVRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLA 365
G+ RL C G P P+I W + V+S L T + + Y C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 366 DNVPPQILI 374
N +L
Sbjct: 61 RNRHGNLLA 69
>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac
myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the
C5 immunoglobulin (Ig) domain of cardiac myosin binding
protein C (MyBP-C). MyBP_C consists of repeated domains,
Ig and fibronectin type 3, and various linkers. Three
isoforms of MYBP_C exist and are included in this group:
cardiac(c), and fast and slow skeletal muscle (s)
MyBP_C. cMYBP_C has insertions between and inside
domains and an additional cardiac-specific Ig domain at
the N-terminus. For cMYBP_C an interaction has been
demonstrated between this C5 domain and the Ig C8
domain.
Length = 86
Score = 29.0 bits (65), Expect = 2.2
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 297 SSSPIVVREGDNVRLRCVATGHPKPSIIWKTSENKPITLGSWK---DSAVASSTLNFTRI 353
+ + IVV G+ +RL +G P P++ W + K T + +S S+
Sbjct: 1 AENTIVVVAGNKLRLDVPISGEPAPTVTWSRGD-KAFTETEGRVRVESYKDLSSFVIEGA 59
Query: 354 NRINMGAY 361
R + G Y
Sbjct: 60 EREDEGVY 67
>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain
found in Perlecan and similar proteins.
Ig3_Perlecan_like: domain similar to the third
immunoglobulin (Ig)-like domain found in Perlecan.
Perlecan is a large multi-domain heparin sulfate
proteoglycan, important in tissue development and
organogenesis. Perlecan can be represented as 5 major
portions; its fourth major portion (domain IV) is a
tandem repeat of immunoglobulin-like domains (Ig2-Ig15),
which can vary in size due to alternative splicing.
Perlecan binds many cellular and extracellular ligands.
Its domain IV region has many binding sites. Some of
these have been mapped at the level of individual
Ig-like domains, including a site restricted to the Ig5
domain for heparin/sulfatide, a site restricted to the
Ig3 domain for nidogen-1 and nidogen-2, a site
restricted to Ig4-5 for fibronectin, and sites
restricted to Ig2 and to Ig13-15 for fibulin-2.
Length = 85
Score = 29.1 bits (65), Expect = 2.7
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 377 RRVGVPIGRTATLECEVEAFPLSVRY---WEFIDGTLIEHDGVKYSISDVDKGSYQYIMQ 433
R V G + C A S Y W + G L + +
Sbjct: 9 RSQEVRPGADVSFICR--AKSKSPAYTLVWTRVGGGL-------------PSRAMDFNGI 53
Query: 434 LNISNVNISDFDTYRCISKNEVDIAKGSLILF 465
L I NV +SD TY C N +D + + L+
Sbjct: 54 LTIRNVQLSDAGTYVCTGSNMLDTDEATATLY 85
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 28.3 bits (63), Expect = 3.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 309 VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTLNFTRINRINMGAYMCLADN 367
V++ C A G P+P+I W + +T S K L + + G Y C+A N
Sbjct: 1 VQIPCSAQGDPEPTITW-NKDGVQVT-ESGKFHISPEGYLAIRDVGVADQGRYECVARN 57
>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain. IgC: Immunoglobulin
constant domain (IgC). Members of the IgC family are
components of immunoglobulin, T-cell receptors, CD1 cell
surface glycoproteins, secretory glycoproteins A/C, and
Major Histocompatibility Complex (MHC) class I/II
molecules. In immunoglobulins, each chain is composed of
one variable domain (IgV) and one or more IgC domains.
These names reflect the fact that the variability in
sequences is higher in the variable domain than in the
constant domain. The IgV domain is responsible for
antigen binding, and the IgC domain is involved in
oligomerization and molecular interactions.
Length = 95
Score = 28.6 bits (64), Expect = 4.0
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 294 HIFSSSPIVVREGDNVRLRCVATG-HPKP-SIIWKTSENKPITLGSWKDSAV-------- 343
+ SP G +V L C+ATG +P ++ W K +T G V
Sbjct: 2 FLLPPSP-EELLGGSVTLTCLATGFYPPDITVTWL-KNGKELTSGVTTTPPVPNSDGTYS 59
Query: 344 ASSTLNFT 351
SS L +
Sbjct: 60 VSSQLTVS 67
>gnl|CDD|118874 pfam10353, DUF2430, Protein of unknown function (DUF2430). This is
a family of short, 111 residue, proteins found in S.
pombe. The function is not known.
Length = 107
Score = 28.8 bits (64), Expect = 4.4
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 393 VEAFPLSVRYWEFIDGTLIEHDGVKYSISDVDKGSYQYIMQLNISNVNISDFDTYRC 449
V+ L +Y E + + +H + + +D+ +Y Y++ NI+ +N +D D Y C
Sbjct: 24 VDYAKLPPKYAELLANAIDQHGLMLFDTADIRIEAYNYLLN-NITEIN-NDTDAYLC 78
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 30.0 bits (67), Expect = 4.8
Identities = 29/114 (25%), Positives = 36/114 (31%), Gaps = 11/114 (9%)
Query: 146 GPPGPQGIPGDEGKRGPKGDMGY-PGPQGIPGDEGKRGPKGDM-GYPGRIGLDGRDGLPG 203
GP Q I + +MG PG +P P G+ G+ R G
Sbjct: 162 GPNPQQRINPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQMRPGFNPMPGMPPRPGFNQ 221
Query: 204 EPGLD------GIPGRNGMDGIPGKDGLPGKDGIPGTN---GTNGEKGMTGPRG 248
P + G + G PG P PG N G N M GPR
Sbjct: 222 NPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPHMAGPRA 275
>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain. These
domains belong to the immunoglobulin superfamily.
Length = 89
Score = 28.2 bits (63), Expect = 4.8
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 294 HIFSSSPIVVREGDNVRLRCVAT-GHPKPSIIW 325
I ++ E V C + G P P I W
Sbjct: 2 TIEPPVSLLEGENLEVVATCSSAGGKPAPRITW 34
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 28.7 bits (64), Expect = 5.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 297 SSSPIVVREGDNVRLRC-VATGHPKPSIIW 325
P+ V EG +V L C ++ S+ W
Sbjct: 7 PPRPVTVAEGGSVTLPCSFSSSSGSTSVYW 36
>gnl|CDD|216952 pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a
trimeric structure which facilitates the diffusion of
maltodextrins across the outer membrane of Gram-negative
bacteria. The membrane channel is formed by an
antiparallel beta-barrel.
Length = 399
Score = 30.2 bits (68), Expect = 5.8
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 784 TYNSRYKDLYTWDRGN---SLTYPIRYHEIDSYNLNKQEKTDADMTTG 828
++ R + W G+ S Y E D YNLN D M
Sbjct: 163 VFDLRLAGIPLWPDGSLEVSGDYARANDEKDDYNLNYGAAKDGWMFGA 210
>gnl|CDD|131928 TIGR02882, QoxB, cytochrome aa3 quinol oxidase, subunit I. This
family (QoxB) encodes subunit I of the aa3-type quinone
oxidase, one of several bacterial terminal oxidases.
This complex couples oxidation of reduced quinones with
the reduction of molecular oxygen to water and the
pumping of protons to form a proton gradient utilized
for ATP production. aa3-type oxidases contain two heme a
cofactors as well as copper atoms in the active site
[Energy metabolism, Electron transport].
Length = 643
Score = 29.8 bits (67), Expect = 7.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 723 WNITLLHKKVGDMFVVCGVLYVVDSVTDRNTNIRFALDLYKNDLLEVSLNFTNPFTN--T 780
W T+ HKK+G M+++C VL + D +R L + N L+ + ++ FT
Sbjct: 44 WLTTVDHKKIGVMYIICAVLMLFRGGID-ALLMRAQLTVPDNKFLD-AQHYNEIFTTHGV 101
Query: 781 TMITY 785
MI +
Sbjct: 102 IMIIF 106
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 29.6 bits (66), Expect = 8.1
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 123 EIGAKGEMGVKGERGEKGAPGVVGPPGPQGIPGDEG-KRGPKGDMGYPGPQGIPGDEGKR 181
E+G G + + GE GE G+ P P+ P E P P P
Sbjct: 68 EVG--GVLAIIGEPGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGE 125
Query: 182 GPKGDM 187
+ M
Sbjct: 126 ATEVKM 131
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central
nervous system. In rats, a lack of contactin-5 (NB-2)
results in an impairment of the neuronal activity in the
auditory system. Contactin-5 is expressed specifically
in the postnatal nervous system, peaking at about 3
weeks postnatal. Contactin-5 is highly expressed in the
adult human brain in the occipital lobe and in the
amygdala; lower levels of expression have been detected
in the corpus callosum, caudate nucleus, and spinal
cord.
Length = 94
Score = 27.6 bits (61), Expect = 9.3
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 300 PIVVREGDN-----------VRLRCVATGHPKPSIIWKTSENKPITLGSWKDSAVASSTL 348
P+ V+E D+ V L C A G+P P+ W + + T ++ S + + +
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 349 NFTRINRINMGAYMCLADNVPPQILIRN 376
+ G Y CLA N IL R
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIGSILSRE 89
>gnl|CDD|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript
family. The immune response of the purple sea urchin
appears to be more complex than previously believed in
that it uses immune-related gene families homologous to
vertebrate Toll-like and NOD/NALP-like receptor families
as well as C-type lectins and a rudimentary complement
system. In addition, the species also produces this
unusual family of mRNAs, also known as 185/333, which is
strongly upregulated in response to pathogen challenge.
Length = 312
Score = 29.2 bits (65), Expect = 9.4
Identities = 31/86 (36%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 138 EKGAPGVVGPPGPQGIPGDEGKRGPKGDMGYPGPQ-GIPGDEGKR---GPKGDMGYPG-R 192
E+G G PG + G GP G + GP G P +G+R GP G + G R
Sbjct: 36 ERGQGRFGGRPGGMQMGGPRQDGGPMGGRRFDGPGSGAPQMDGRRQNGGPMGGRRFDGPR 95
Query: 193 IGLDGRDGLPGEPGLDGIPGRNGMDG 218
G DG G P G GR G DG
Sbjct: 96 FGGSRPDGAGGRP-FFGQGGRRG-DG 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.136 0.421
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 46,035,462
Number of extensions: 4544587
Number of successful extensions: 2692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2604
Number of HSP's successfully gapped: 115
Length of query: 902
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 796
Effective length of database: 6,236,078
Effective search space: 4963918088
Effective search space used: 4963918088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (28.6 bits)